AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87676

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87676.t1 MTR_7g073980 98.347 605 10 0 1 605 1 605 0.0 1235
MS.gene87676.t1 MTR_4g022330 50.950 579 243 11 25 581 26 585 0.0 550
MS.gene87676.t1 MTR_1g088885 45.274 603 294 9 31 612 34 621 1.86e-169 496
MS.gene87676.t1 MTR_7g108290 45.122 574 277 10 31 579 34 594 6.46e-163 481
MS.gene87676.t1 MTR_5g016060 40.879 614 315 16 29 612 35 630 2.21e-141 425
MS.gene87676.t1 MTR_4g095430 40.734 572 305 13 32 581 12 571 1.18e-134 406
MS.gene87676.t1 MTR_3g062540 35.919 593 321 11 32 612 23 568 3.24e-115 355
MS.gene87676.t1 MTR_2g018750 38.235 544 290 12 33 549 26 550 9.41e-113 350
MS.gene87676.t1 MTR_8g078900 33.821 683 345 17 7 609 1 656 1.11e-112 352
MS.gene87676.t1 MTR_5g016060 39.474 532 276 14 110 612 2 516 2.59e-111 343
MS.gene87676.t1 MTR_4g093850 35.355 577 309 12 29 549 40 608 8.58e-111 347
MS.gene87676.t1 MTR_3g062540 36.189 572 306 12 53 612 2 526 3.31e-110 341
MS.gene87676.t1 MTR_2g084595 33.710 620 356 14 30 600 18 631 8.15e-110 343
MS.gene87676.t1 MTR_8g078900 34.419 645 323 16 45 609 2 626 2.48e-109 342
MS.gene87676.t1 MTR_5g075640 33.833 600 341 13 29 612 20 579 5.22e-106 332
MS.gene87676.t1 MTR_2g009340 34.488 606 324 16 7 549 19 614 2.03e-105 333
MS.gene87676.t1 MTR_1g064360 38.622 479 259 10 33 495 26 485 3.73e-105 329
MS.gene87676.t1 MTR_8g078900 35.871 591 298 15 80 609 46 616 3.60e-104 328
MS.gene87676.t1 MTR_1g094850 35.839 572 318 15 33 576 26 576 1.41e-101 321
MS.gene87676.t1 MTR_5g075640 34.087 575 324 12 53 612 2 536 4.69e-101 317
MS.gene87676.t1 MTR_5g032780 38.523 501 265 9 29 489 22 519 3.41e-99 316
MS.gene87676.t1 MTR_8g090220 35.521 518 278 10 2 490 22 512 2.01e-96 305
MS.gene87676.t1 MTR_8g090220 35.225 511 267 9 23 494 42 527 1.53e-95 306
MS.gene87676.t1 MTR_1g014070 33.898 590 335 15 25 587 19 580 1.98e-90 292
MS.gene87676.t1 MTR_5g015790 36.929 482 262 14 29 489 23 483 1.46e-88 288
MS.gene87676.t1 MTR_8g069330 35.271 516 281 12 36 525 29 517 6.95e-86 280
MS.gene87676.t1 MTR_1g106430 33.028 545 322 12 23 540 18 546 1.63e-84 277
MS.gene87676.t1 MTR_2g048390 37.471 427 240 7 36 438 29 452 7.26e-84 270
MS.gene87676.t1 MTR_4g093850 34.641 459 243 11 29 438 40 490 1.85e-79 261
MS.gene87676.t1 MTR_1g082690 33.405 464 268 10 31 490 56 482 2.40e-79 261
MS.gene87676.t1 MTR_8g078900 33.264 484 250 10 7 438 1 463 9.56e-79 257
MS.gene87676.t1 MTR_2g084595 33.641 434 257 10 30 438 18 445 3.06e-75 247
MS.gene87676.t1 MTR_4g134210 32.421 475 298 10 21 487 14 473 6.17e-74 248
MS.gene87676.t1 MTR_8g078900 36.224 392 203 8 80 438 46 423 1.01e-70 234
MS.gene87676.t1 MTR_2g027410 32.025 484 289 12 16 487 8 463 2.48e-66 227
MS.gene87676.t1 MTR_4g011530 34.230 409 229 9 203 601 44 422 2.58e-61 210
MS.gene87676.t1 MTR_2g102730 37.368 380 212 9 208 580 24 384 7.41e-60 206
MS.gene87676.t1 MTR_2g027410 32.297 418 245 10 81 487 1 391 2.73e-55 196
MS.gene87676.t1 MTR_4g045767 29.371 572 334 21 36 573 7 542 1.43e-53 192
MS.gene87676.t1 MTR_1g105870 37.674 215 104 6 45 252 43 234 1.80e-38 143
MS.gene87676.t1 MTR_1g035720 27.933 358 201 10 206 554 208 517 5.30e-31 127
MS.gene87676.t1 MTR_1g035720 34.783 115 69 2 42 155 13 122 8.82e-12 68.2
MS.gene87676.t1 MTR_4g074190 28.205 351 211 8 206 551 162 476 1.43e-30 125
MS.gene87676.t1 MTR_4g074190 28.205 351 211 8 206 551 208 522 2.34e-30 125
MS.gene87676.t1 MTR_4g074190 31.746 126 82 3 36 157 6 131 9.07e-12 68.2
MS.gene87676.t1 MTR_2g010890 28.463 397 222 10 101 475 2 358 5.20e-28 117
MS.gene87676.t1 MTR_4g074190 29.707 239 135 6 206 440 208 417 2.79e-20 94.4
MS.gene87676.t1 MTR_4g074190 31.746 126 82 3 36 157 6 131 5.94e-12 68.6
MS.gene87676.t1 MTR_2g048375 46.226 106 47 3 455 555 1 101 4.81e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87676.t1 AT3G08570 62.645 605 202 11 21 611 22 616 0.0 720
MS.gene87676.t1 AT3G08660 60.269 594 191 13 24 608 25 582 0.0 671
MS.gene87676.t1 AT3G08660 58.961 558 184 13 60 608 1 522 0.0 609
MS.gene87676.t1 AT5G48800 48.562 591 263 10 29 602 37 603 0.0 531
MS.gene87676.t1 AT1G03010 44.935 612 296 12 31 612 7 607 1.61e-164 483
MS.gene87676.t1 AT1G03010 44.878 615 298 12 28 612 30 633 1.80e-164 484
MS.gene87676.t1 AT1G03010 44.935 612 296 12 31 612 34 634 3.68e-164 483
MS.gene87676.t1 AT3G08660 56.744 430 148 9 24 446 25 423 2.57e-158 461
MS.gene87676.t1 AT2G47860 42.605 622 311 10 13 609 24 624 4.54e-154 457
MS.gene87676.t1 AT2G47860 41.467 627 305 10 31 609 35 647 1.77e-148 444
MS.gene87676.t1 AT5G67385 40.464 603 315 13 32 612 24 604 2.19e-136 411
MS.gene87676.t1 AT5G67385 40.208 577 301 13 58 612 5 559 5.18e-127 385
MS.gene87676.t1 AT5G67385 40.208 577 301 13 58 612 5 559 5.18e-127 385
MS.gene87676.t1 AT5G67385 40.208 577 301 13 58 612 5 559 5.18e-127 385
MS.gene87676.t1 AT5G67385 40.208 577 301 13 58 612 5 559 5.18e-127 385
MS.gene87676.t1 AT2G47860 41.667 516 266 8 119 609 1 506 7.63e-120 365
MS.gene87676.t1 AT2G47860 41.667 516 266 8 119 609 1 506 7.63e-120 365
MS.gene87676.t1 AT1G30440 38.581 578 314 13 36 576 29 602 1.68e-115 359
MS.gene87676.t1 AT5G03250 37.838 555 287 14 33 555 26 554 4.05e-109 340
MS.gene87676.t1 AT5G13600 37.189 562 301 13 36 571 29 564 1.92e-108 338
MS.gene87676.t1 AT2G30520 34.680 594 346 12 32 612 29 593 2.25e-108 338
MS.gene87676.t1 AT5G66560 36.026 619 291 13 33 560 19 623 1.72e-106 336
MS.gene87676.t1 AT3G50840 37.167 600 318 16 25 609 12 567 1.10e-105 330
MS.gene87676.t1 AT5G66560 35.914 607 284 13 45 560 2 594 4.96e-104 328
MS.gene87676.t1 AT3G49970 34.974 569 289 15 45 595 6 511 5.05e-104 325
MS.gene87676.t1 AT3G49970 34.974 569 289 15 45 595 6 511 5.05e-104 325
MS.gene87676.t1 AT2G30520 34.555 573 333 12 53 612 2 545 1.35e-102 322
MS.gene87676.t1 AT2G30520 34.555 573 333 12 53 612 2 545 1.35e-102 322
MS.gene87676.t1 AT5G66560 38.390 534 267 12 75 560 65 584 2.05e-102 324
MS.gene87676.t1 AT2G47860 43.499 423 210 7 31 438 35 443 2.08e-102 318
MS.gene87676.t1 AT3G44820 33.096 562 336 9 33 557 23 581 2.97e-102 324
MS.gene87676.t1 AT3G50840 36.620 568 305 15 57 609 4 531 2.46e-97 308
MS.gene87676.t1 AT3G50840 36.620 568 305 15 57 609 4 531 2.46e-97 308
MS.gene87676.t1 AT2G47860 41.256 446 210 8 31 438 35 466 4.69e-97 305
MS.gene87676.t1 AT2G14820 34.807 543 304 14 32 542 26 550 1.70e-91 295
MS.gene87676.t1 AT2G14820 34.807 543 304 14 32 542 26 550 1.70e-91 295
MS.gene87676.t1 AT1G67900 33.333 582 319 14 29 553 22 591 1.96e-84 277
MS.gene87676.t1 AT1G67900 33.333 582 319 14 29 553 22 591 1.96e-84 277
MS.gene87676.t1 AT1G67900 33.333 582 319 14 29 553 22 591 1.96e-84 277
MS.gene87676.t1 AT1G67900 33.333 582 319 14 29 553 22 591 1.96e-84 277
MS.gene87676.t1 AT1G67900 33.333 582 319 14 29 553 22 591 1.96e-84 277
MS.gene87676.t1 AT1G67900 33.333 582 319 14 29 553 22 591 1.96e-84 277
MS.gene87676.t1 AT4G31820 33.776 527 283 15 31 538 25 504 2.98e-83 272
MS.gene87676.t1 AT5G10250 31.579 551 312 12 31 549 48 565 2.83e-80 266
MS.gene87676.t1 AT5G67440 33.884 484 291 13 29 499 23 490 2.30e-79 262
MS.gene87676.t1 AT5G67440 33.884 484 291 13 29 499 23 490 2.30e-79 262
MS.gene87676.t1 AT2G23050 32.755 461 261 10 46 498 40 459 1.28e-78 257
MS.gene87676.t1 AT5G03250 35.546 467 246 12 119 555 1 442 1.38e-78 257
MS.gene87676.t1 AT5G10250 31.667 540 311 12 31 549 48 550 3.42e-76 254
MS.gene87676.t1 AT4G37590 32.245 490 278 12 29 500 23 476 7.97e-76 253
MS.gene87676.t1 AT5G67440 33.978 465 278 13 48 499 5 453 1.11e-74 248
MS.gene87676.t1 AT5G66560 34.337 498 239 10 9 438 2 479 1.18e-74 247
MS.gene87676.t1 AT3G26490 32.207 503 282 10 29 489 22 507 5.46e-74 248
MS.gene87676.t1 AT3G26490 32.207 503 282 10 29 489 22 507 5.46e-74 248
MS.gene87676.t1 AT3G26490 32.207 503 282 10 29 489 22 507 5.46e-74 248
MS.gene87676.t1 AT4G31820 34.573 457 246 14 60 497 1 423 5.83e-74 246
MS.gene87676.t1 AT5G47800 29.769 477 311 9 29 499 22 480 1.60e-64 222
MS.gene87676.t1 AT5G47800 29.769 477 311 9 29 499 22 480 1.60e-64 222
MS.gene87676.t1 AT5G47800 29.769 477 311 9 29 499 22 480 1.60e-64 222
MS.gene87676.t1 AT5G47800 29.769 477 311 9 29 499 135 593 1.10e-63 222
MS.gene87676.t1 AT1G52770 36.908 401 218 9 201 586 23 403 1.36e-63 217
MS.gene87676.t1 AT3G26490 30.243 453 257 10 29 439 22 457 5.49e-55 195
MS.gene87676.t1 AT5G64330 35.143 350 186 8 272 584 371 716 4.96e-54 197
MS.gene87676.t1 AT5G64330 34.420 276 150 5 7 254 26 298 1.91e-39 154
MS.gene87676.t1 AT2G23050 30.990 384 220 9 119 498 1 343 1.33e-53 187
MS.gene87676.t1 AT3G15570 36.424 302 160 7 208 494 29 313 3.95e-52 186
MS.gene87676.t1 AT5G64330 42.105 247 120 4 272 498 312 555 8.07e-52 188
MS.gene87676.t1 AT5G64330 35.246 244 123 6 41 254 1 239 3.51e-35 140
MS.gene87676.t1 AT5G64330 42.105 247 120 4 272 498 371 614 2.24e-51 188
MS.gene87676.t1 AT5G64330 34.420 276 150 5 7 254 26 298 9.52e-40 155
MS.gene87676.t1 AT5G48130 28.425 489 278 13 33 498 39 478 4.23e-50 184
MS.gene87676.t1 AT3G19850 28.310 491 282 13 36 488 6 464 3.16e-49 180
MS.gene87676.t1 AT3G22104 29.004 462 261 13 34 474 5 420 4.07e-45 167
MS.gene87676.t1 AT3G03510 28.193 415 236 10 88 495 8 367 6.07e-44 163
MS.gene87676.t1 AT1G50280 27.254 477 298 11 35 483 5 460 2.71e-41 157
MS.gene87676.t1 AT1G50280 27.021 433 274 8 73 483 15 427 2.89e-38 148
MS.gene87676.t1 AT3G22104 29.639 388 208 11 106 474 4 345 4.16e-34 135
MS.gene87676.t1 AT3G22104 29.639 388 208 11 106 474 4 345 4.16e-34 135
MS.gene87676.t1 AT3G22104 29.639 388 208 11 106 474 4 345 4.16e-34 135
MS.gene87676.t1 AT5G17580 26.569 478 306 12 31 495 18 463 5.20e-34 137
MS.gene87676.t1 AT5G17580 26.569 478 306 12 31 495 3 448 1.05e-33 135
MS.gene87676.t1 AT3G49900 28.099 242 137 10 389 599 198 433 2.54e-12 70.1

Find 143 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTACCTCACTTTCTA+AGG 0.191424 7.1:+28743748 MS.gene87676:CDS
GGTATTCTTCTGTCATTTCT+AGG 0.221446 7.1:-28742222 None:intergenic
TGCAAAGAGCAATTAGTTTC+TGG 0.240250 7.1:+28742412 MS.gene87676:CDS
GTGTAAGAGTTGCAAAATTT+AGG 0.283416 7.1:-28741241 None:intergenic
CTGGTGTCCTCCTGGAAAAT+TGG 0.284753 7.1:-28742110 None:intergenic
CTTGTTCTGTTAATGCTGTA+TGG 0.294581 7.1:-28743367 None:intergenic
TTGAAAGAAGGATATCATTA+AGG 0.332998 7.1:+28742830 MS.gene87676:CDS
ACACTGTGATGGTGAATCTA+AGG 0.338620 7.1:+28742447 MS.gene87676:CDS
ATTCCCCTGACTTTCTTGTT+TGG 0.339874 7.1:+28742754 MS.gene87676:CDS
ATGATTGATAAAGCAGAAAA+TGG 0.344798 7.1:+28743719 MS.gene87676:CDS
ATCTCCTCCACTATAGTTAG+AGG 0.352751 7.1:-28742346 None:intergenic
AATGCCGTGTCGGGGAGTTC+AGG 0.363949 7.1:+28743524 MS.gene87676:CDS
TGGCTTCAGCAACCATCTTC+CGG 0.381051 7.1:-28742054 None:intergenic
TCCGATGGGATTGGTTCTAA+TGG 0.384085 7.1:+28742997 MS.gene87676:CDS
GATATCATTAAGGTTGGAAA+TGG 0.388010 7.1:+28742840 MS.gene87676:CDS
GTATTGGAAAGTGTCAATTA+TGG 0.394063 7.1:+28742626 MS.gene87676:CDS
CTTGTTTGGCATGTTAAAGA+TGG 0.398461 7.1:+28742768 MS.gene87676:CDS
AGCCGTCGACATTTATTTGA+AGG 0.403248 7.1:+28743167 MS.gene87676:CDS
TGAAACACTGGAACCCTTGT+TGG 0.405530 7.1:-28742074 None:intergenic
TTTGCAACTCTTACACTACT+AGG 0.408962 7.1:+28741248 MS.gene87676:CDS
CAAACATCACTGAAGGGTAT+TGG 0.414923 7.1:+28742610 MS.gene87676:CDS
TTAAAGATGGCTATCATGTT+AGG 0.417004 7.1:+28742781 MS.gene87676:CDS
CTTTCAAGCTCAAGCCTACA+TGG 0.421438 7.1:-28742814 None:intergenic
TATATGTGCCATGGGAAGAA+TGG 0.424923 7.1:+28742543 MS.gene87676:CDS
CTTCCGGATCTTCCCACTTA+GGG 0.425399 7.1:-28742038 None:intergenic
TCAAATGTCTGGTGTCCTCC+TGG 0.430176 7.1:-28742118 None:intergenic
TTGTTCTGTTAATGCTGTAT+GGG 0.435254 7.1:-28743366 None:intergenic
CAAGAAAGTCAGGGGAATGA+TGG 0.436530 7.1:-28742749 None:intergenic
TGGTGTCCTCCTGGAAAATT+GGG 0.437510 7.1:-28742109 None:intergenic
TTCTGTCATTTCTAGGTACT+CGG 0.438557 7.1:-28742215 None:intergenic
AAGAAGGATATCATTAAGGT+TGG 0.441280 7.1:+28742834 MS.gene87676:CDS
TCTATGACACGAGCATAATC+AGG 0.441641 7.1:-28743129 None:intergenic
GGTTCATCTGTAGTTTCCCT+TGG 0.444366 7.1:+28742012 MS.gene87676:intron
ACATGCCAAACAAGAAAGTC+AGG 0.444410 7.1:-28742759 None:intergenic
TGTAGACTTAAGCAAGGATC+AGG 0.445041 7.1:-28743078 None:intergenic
ATATGTGCCATGGGAAGAAT+GGG 0.445842 7.1:+28742544 MS.gene87676:CDS
GGGTTCCAGTGTTTCAAACT+TGG 0.447494 7.1:+28742081 MS.gene87676:CDS
GTTGCAAAATTTAGGAGTAG+TGG 0.451556 7.1:-28741233 None:intergenic
TGGTGAATCTAAGGAAATAA+AGG 0.452867 7.1:+28742456 MS.gene87676:CDS
AGCTGGAGATTTCAAGATTG+AGG 0.454447 7.1:+28743648 MS.gene87676:CDS
TCATCGCAAGTTCAAATGTC+TGG 0.454966 7.1:-28742129 None:intergenic
CGAGTGCAGCCATGTCTCCT+AGG 0.456610 7.1:+28743585 MS.gene87676:CDS
CTCGGCTGCACAACGTAGTC+GGG 0.459928 7.1:-28742197 None:intergenic
GACATTACAATTGTCGTTGA+TGG 0.462071 7.1:+28741632 MS.gene87676:CDS
GGAGTCATTTCTGTTACATA+AGG 0.462499 7.1:+28741655 MS.gene87676:CDS
GTCAATTATGGAATCAATCA+AGG 0.462880 7.1:+28742638 MS.gene87676:CDS
TGGTTTCCACAGTTGTCCTC+TGG 0.466948 7.1:-28742693 None:intergenic
CTTGCGATGAAGTTCTGTTA+TGG 0.470748 7.1:+28742142 MS.gene87676:CDS
ACATTACAATTGTCGTTGAT+GGG 0.475676 7.1:+28741633 MS.gene87676:CDS
TCTTCCGGATCTTCCCACTT+AGG 0.479881 7.1:-28742039 None:intergenic
AAAAGCAAGTAGGAAGTCTC+GGG 0.484110 7.1:+28743820 MS.gene87676:CDS
TTTCCCTTGGTTACCCTAAG+TGG 0.486130 7.1:+28742025 MS.gene87676:CDS
CCATGGCACATATAACTCTC+TGG 0.487049 7.1:-28742534 None:intergenic
AAGTCCAACTACTATAGAAA+AGG 0.489212 7.1:+28742669 MS.gene87676:CDS
TTACCCTAAGTGGGAAGATC+CGG 0.489913 7.1:+28742035 MS.gene87676:CDS
GCTGGAGATTTCAAGATTGA+GGG 0.494686 7.1:+28743649 MS.gene87676:CDS
TAGAAATGACAGAAGAATAC+CGG 0.497733 7.1:+28742224 MS.gene87676:CDS
GGATATGAATCCGATGGGAT+TGG 0.499189 7.1:+28742988 MS.gene87676:CDS
AGCGCAACTGCTCAAAATAC+AGG 0.499703 7.1:-28743496 None:intergenic
AGAGAATCGAGAACTGAAGC+TGG 0.499912 7.1:+28743631 MS.gene87676:CDS
GTGTCGGGGAGTTCAGGAGA+TGG 0.504014 7.1:+28743530 MS.gene87676:CDS
ACCATGCTGCACAGAATGAC+AGG 0.507865 7.1:+28743447 MS.gene87676:CDS
ACTCGGCTGCACAACGTAGT+CGG 0.508972 7.1:-28742198 None:intergenic
AGGAAGTCTCGGGGAACAGA+GGG 0.512020 7.1:+28743830 MS.gene87676:CDS
AGATTTCAAGATTGAGGGTG+AGG 0.515783 7.1:+28743654 MS.gene87676:CDS
TTCTTTACCTCACTTTCTAA+GGG 0.516432 7.1:+28743749 MS.gene87676:CDS
TGTCGGGGAGTTCAGGAGAT+GGG 0.520284 7.1:+28743531 MS.gene87676:CDS
GAGGAGATAGAAATCACAAA+AGG 0.526489 7.1:+28742361 MS.gene87676:CDS
GAGGAAGAAGCGGAAGACTA+CGG 0.527391 7.1:+28742967 MS.gene87676:CDS
GAGGGTGAGGCTGAGTGAGT+TGG 0.529782 7.1:+28743667 MS.gene87676:CDS
GAGTCCCCACTCTGCAGAGA+TGG 0.540669 7.1:-28742886 None:intergenic
CCAGAGAGTTATATGTGCCA+TGG 0.541278 7.1:+28742534 MS.gene87676:CDS
TAGGAGATATTCTCTCTCAT+AGG 0.541681 7.1:+28743868 MS.gene87676:CDS
GAGGCTGAGTGAGTTGGAGA+AGG 0.553823 7.1:+28743673 MS.gene87676:CDS
TTCCCTTGGTTACCCTAAGT+GGG 0.556169 7.1:+28742026 MS.gene87676:CDS
ACCTCACTTTCTAAGGGGAT+AGG 0.556654 7.1:+28743755 MS.gene87676:CDS
AAATATCTGTTCTTGAGATG+AGG 0.557190 7.1:-28742255 None:intergenic
TTGACGTGGACACAGTTCAC+AGG 0.557971 7.1:+28742914 MS.gene87676:CDS
CATGGTTCTCTGCTAAAAGT+AGG 0.558923 7.1:+28743021 MS.gene87676:CDS
TCCTATCCCCTTAGAAAGTG+AGG 0.559258 7.1:-28743756 None:intergenic
AAGTGGGAAGATCCGGAAGA+TGG 0.559265 7.1:+28742042 MS.gene87676:CDS
AACTGTGTCCACGTCAAACA+AGG 0.559313 7.1:-28742908 None:intergenic
TTATGCTCAAACATCACTGA+AGG 0.563509 7.1:+28742603 MS.gene87676:CDS
AAGCTCCAAGTTTGAAACAC+TGG 0.565146 7.1:-28742086 None:intergenic
AAGCTCAAGCCTACATGGAA+TGG 0.565173 7.1:-28742809 None:intergenic
CAGAGAGTTATATGTGCCAT+GGG 0.567364 7.1:+28742535 MS.gene87676:CDS
CTAGGAGACATGGCTGCACT+CGG 0.571055 7.1:-28743584 None:intergenic
TTATACCATCTCTGCAGAGT+GGG 0.572630 7.1:+28742881 MS.gene87676:CDS
TGACAGGCTTCCACTGCAGA+TGG 0.573993 7.1:+28743463 MS.gene87676:CDS
TACTAGAGAATTTCTTGCAG+CGG 0.576816 7.1:+28742938 MS.gene87676:CDS
GATGGTTGCTGAAGCCAACA+AGG 0.578445 7.1:+28742060 MS.gene87676:CDS
TAGGTGCCACCATTCCATGT+AGG 0.580216 7.1:+28742800 MS.gene87676:CDS
TAGGAAGTCTCGGGGAACAG+AGG 0.580832 7.1:+28743829 MS.gene87676:CDS
TTGTCTTTCAAAATCTTCAG+AGG 0.582903 7.1:+28742290 MS.gene87676:CDS
AGTGATGCGTAGTTGTCCCT+AGG 0.583178 7.1:-28743602 None:intergenic
GCGGATTGAAGAGGAAGAAG+CGG 0.584077 7.1:+28742957 MS.gene87676:CDS
GCCTGTCATTCTGTGCAGCA+TGG 0.587678 7.1:-28743448 None:intergenic
AGAAATCACAAAAGGATCTG+TGG 0.587984 7.1:+28742369 MS.gene87676:CDS
GACTACGGATATGAATCCGA+TGG 0.588057 7.1:+28742982 MS.gene87676:CDS
GTAGGCTTGAGCTTGAAAGA+AGG 0.589390 7.1:+28742818 MS.gene87676:CDS
CATTACAATTGTCGTTGATG+GGG 0.593770 7.1:+28741634 MS.gene87676:CDS
TACCTTCAAATAAATGTCGA+CGG 0.594449 7.1:-28743169 None:intergenic
TGTTGGCATGAGGTTGACAA+TGG 0.596801 7.1:-28742713 None:intergenic
AGTTAGAGGTAACATCTCAC+AGG 0.601764 7.1:-28742332 None:intergenic
GAGTGCAGCCATGTCTCCTA+GGG 0.603694 7.1:+28743586 MS.gene87676:CDS
GATGTTACCTCTAACTATAG+TGG 0.603886 7.1:+28742339 MS.gene87676:CDS
CTTATACCATCTCTGCAGAG+TGG 0.604785 7.1:+28742880 MS.gene87676:CDS
GGGATTGGTTCTAATGGACA+TGG 0.606623 7.1:+28743003 MS.gene87676:CDS
TTATCTAAATTACACTGTGA+TGG 0.607505 7.1:+28742436 MS.gene87676:CDS
GTAGTTGTCCCTAGGAGACA+TGG 0.609118 7.1:-28743594 None:intergenic
GGAAATAAAGGATGAGTGCG+TGG 0.609921 7.1:+28742468 MS.gene87676:CDS
TATGCTCGTGTCATAGATGA+TGG 0.614056 7.1:+28743135 MS.gene87676:CDS
TCAAAATCTTCAGAGGTCAG+TGG 0.615237 7.1:+28742297 MS.gene87676:CDS
ACTACGGATATGAATCCGAT+GGG 0.617539 7.1:+28742983 MS.gene87676:CDS
CTCAAGCCTACATGGAATGG+TGG 0.617895 7.1:-28742806 None:intergenic
TTTCTTGCAGCGGATTGAAG+AGG 0.618091 7.1:+28742948 MS.gene87676:CDS
TCTTTACCTCACTTTCTAAG+GGG 0.618634 7.1:+28743750 MS.gene87676:CDS
TCCATTAGAACCAATCCCAT+CGG 0.620313 7.1:-28742998 None:intergenic
CTTCCCACTTAGGGTAACCA+AGG 0.621549 7.1:-28742029 None:intergenic
AATTTCTGTAGACTTAAGCA+AGG 0.623225 7.1:-28743084 None:intergenic
TGGGGACTCCTTGTTTGACG+TGG 0.632295 7.1:+28742900 MS.gene87676:CDS
ATCTCCTGAACTCCCCGACA+CGG 0.634657 7.1:-28743528 None:intergenic
ACTTGTACCACCATCTGCAG+TGG 0.636178 7.1:-28743473 None:intergenic
CATGCCAAACAAGAAAGTCA+GGG 0.638093 7.1:-28742758 None:intergenic
GAGCAAATGTTCATGAAACA+AGG 0.641551 7.1:+28743695 MS.gene87676:CDS
AGAAATGACAGAAGAATACC+GGG 0.655554 7.1:+28742225 MS.gene87676:CDS
CAGGCTTCCACTGCAGATGG+TGG 0.658123 7.1:+28743466 MS.gene87676:CDS
TATACCATCTCTGCAGAGTG+GGG 0.658913 7.1:+28742882 MS.gene87676:CDS
AGGATGAGTGCGTGGCATGG+TGG 0.659308 7.1:+28742476 MS.gene87676:CDS
TAAAGGATGAGTGCGTGGCA+TGG 0.669308 7.1:+28742473 MS.gene87676:CDS
TATGCTCAAACATCACTGAA+GGG 0.669855 7.1:+28742604 MS.gene87676:CDS
TTCCCACTTAGGGTAACCAA+GGG 0.672159 7.1:-28742028 None:intergenic
CTACTATAGAAAAGGACCAG+AGG 0.676803 7.1:+28742677 MS.gene87676:CDS
GTTACCTCTAACTATAGTGG+AGG 0.680901 7.1:+28742342 MS.gene87676:CDS
ATGCCAAACAAGAAAGTCAG+GGG 0.684232 7.1:-28742757 None:intergenic
GGAAGTCTCGGGGAACAGAG+GGG 0.685774 7.1:+28743831 MS.gene87676:CDS
ATGTGCCATGGGAAGAATGG+GGG 0.687594 7.1:+28742546 MS.gene87676:CDS
ATGGTTGCTGAAGCCAACAA+GGG 0.702263 7.1:+28742061 MS.gene87676:CDS
AAAGCAAGTAGGAAGTCTCG+GGG 0.706742 7.1:+28743821 MS.gene87676:CDS
AAAGGACCAGAGGACAACTG+TGG 0.711669 7.1:+28742687 MS.gene87676:CDS
TATGTGCCATGGGAAGAATG+GGG 0.721508 7.1:+28742545 MS.gene87676:CDS
CTATCACAGAGAATAAGCAG+CGG 0.733663 7.1:+28743557 MS.gene87676:CDS
GGGACAACTACGCATCACTG+CGG 0.795492 7.1:+28743606 MS.gene87676:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCATGTTAACATATTTA+TGG - chr7.1:28741802-28741821 None:intergenic 15.0%
!! TTTCTTTAATATTTCAAAGT+AGG - chr7.1:28741843-28741862 None:intergenic 15.0%
!!! CAAGTTTTATATGATAATTT+TGG + chr7.1:28741723-28741742 MS.gene87676:intron 15.0%
!!! TATGATAATTTTGGTTATTA+TGG + chr7.1:28741732-28741751 MS.gene87676:intron 15.0%
!! AATTTAATATGACTAATGCA+AGG - chr7.1:28741702-28741721 None:intergenic 20.0%
!! TAACATATTTATGGATTCAA+AGG - chr7.1:28741793-28741812 None:intergenic 20.0%
!! TTATCTTTATGCTTCTTAAT+TGG + chr7.1:28741303-28741322 MS.gene87676:intron 20.0%
! ACAATTAAGTGCCTAAATAT+TGG - chr7.1:28743230-28743249 None:intergenic 25.0%
! ACAGAATAAGACACATAATA+TGG - chr7.1:28741352-28741371 None:intergenic 25.0%
! ATGATTGATAAAGCAGAAAA+TGG + chr7.1:28743719-28743738 MS.gene87676:CDS 25.0%
! GAAGCATAAAGATAAATAAG+AGG - chr7.1:28741298-28741317 None:intergenic 25.0%
! TAATGTGAGTATTCAAAAGA+TGG - chr7.1:28741880-28741899 None:intergenic 25.0%
! TTATCTAAATTACACTGTGA+TGG + chr7.1:28742436-28742455 MS.gene87676:CDS 25.0%
! TTGAAAGAAGGATATCATTA+AGG + chr7.1:28742830-28742849 MS.gene87676:CDS 25.0%
!! AGTTTGTAAATTTGATAGCT+TGG + chr7.1:28741482-28741501 MS.gene87676:intron 25.0%
!!! AATCAGTTTTTTCTTCTTCA+TGG + chr7.1:28741584-28741603 MS.gene87676:intron 25.0%
!!! AATTTTGGTTATTATGGCTT+TGG + chr7.1:28741738-28741757 MS.gene87676:intron 25.0%
!!! CTTATGTGCTTTTTTATAAG+AGG + chr7.1:28741423-28741442 MS.gene87676:intron 25.0%
!!! TAACAGCTAATTTGTTGTAA+TGG + chr7.1:28741991-28742010 MS.gene87676:intron 25.0%
AAATATCTGTTCTTGAGATG+AGG - chr7.1:28742258-28742277 None:intergenic 30.0%
AAGAAGGATATCATTAAGGT+TGG + chr7.1:28742834-28742853 MS.gene87676:CDS 30.0%
AAGTCCAACTACTATAGAAA+AGG + chr7.1:28742669-28742688 MS.gene87676:CDS 30.0%
AATATGACTAATGCAAGGTT+AGG - chr7.1:28741697-28741716 None:intergenic 30.0%
AATTTCTGTAGACTTAAGCA+AGG - chr7.1:28743087-28743106 None:intergenic 30.0%
ACATTACAATTGTCGTTGAT+GGG + chr7.1:28741633-28741652 MS.gene87676:CDS 30.0%
GATATCATTAAGGTTGGAAA+TGG + chr7.1:28742840-28742859 MS.gene87676:CDS 30.0%
GTCAATTATGGAATCAATCA+AGG + chr7.1:28742638-28742657 MS.gene87676:CDS 30.0%
GTGTAAGAGTTGCAAAATTT+AGG - chr7.1:28741244-28741263 None:intergenic 30.0%
TACCTTCAAATAAATGTCGA+CGG - chr7.1:28743172-28743191 None:intergenic 30.0%
TACTAGGTACTTCAGTAATA+AGG + chr7.1:28741264-28741283 MS.gene87676:intron 30.0%
TAGAAATGACAGAAGAATAC+CGG + chr7.1:28742224-28742243 MS.gene87676:CDS 30.0%
TGGTGAATCTAAGGAAATAA+AGG + chr7.1:28742456-28742475 MS.gene87676:CDS 30.0%
TTAAAGATGGCTATCATGTT+AGG + chr7.1:28742781-28742800 MS.gene87676:CDS 30.0%
TTCTTTACCTCACTTTCTAA+GGG + chr7.1:28743749-28743768 MS.gene87676:CDS 30.0%
TTGTCTTTCAAAATCTTCAG+AGG + chr7.1:28742290-28742309 MS.gene87676:CDS 30.0%
TTGTTCTGTTAATGCTGTAT+GGG - chr7.1:28743369-28743388 None:intergenic 30.0%
TTTCCCTGATTCCAATATTT+AGG + chr7.1:28743216-28743235 MS.gene87676:intron 30.0%
TTTCTTTACCTCACTTTCTA+AGG + chr7.1:28743748-28743767 MS.gene87676:CDS 30.0%
! CTTTTGCAAGATTGAGAATA+TGG - chr7.1:28743257-28743276 None:intergenic 30.0%
! GCTTTGGATTTCTATGAATT+GGG + chr7.1:28741754-28741773 MS.gene87676:intron 30.0%
!! ATTGCAAATTTTAGCAGTCA+AGG + chr7.1:28743782-28743801 MS.gene87676:CDS 30.0%
!! GTATTGGAAAGTGTCAATTA+TGG + chr7.1:28742626-28742645 MS.gene87676:CDS 30.0%
AAAAAGCAAGTAGGAAGTCT+CGG + chr7.1:28743819-28743838 MS.gene87676:CDS 35.0%
AGAAATCACAAAAGGATCTG+TGG + chr7.1:28742369-28742388 MS.gene87676:CDS 35.0%
AGAAATGACAGAAGAATACC+GGG + chr7.1:28742225-28742244 MS.gene87676:CDS 35.0%
AGTGCCTAAATATTGGAATC+AGG - chr7.1:28743223-28743242 None:intergenic 35.0%
CATTACAATTGTCGTTGATG+GGG + chr7.1:28741634-28741653 MS.gene87676:CDS 35.0%
CTGATCAACTCAAGACTATT+CGG + chr7.1:28741906-28741925 MS.gene87676:intron 35.0%
CTTGTTCTGTTAATGCTGTA+TGG - chr7.1:28743370-28743389 None:intergenic 35.0%
CTTGTTTGGCATGTTAAAGA+TGG + chr7.1:28742768-28742787 MS.gene87676:CDS 35.0%
GACATTACAATTGTCGTTGA+TGG + chr7.1:28741632-28741651 MS.gene87676:CDS 35.0%
GAGCAAATGTTCATGAAACA+AGG + chr7.1:28743695-28743714 MS.gene87676:CDS 35.0%
GAGGAGATAGAAATCACAAA+AGG + chr7.1:28742361-28742380 MS.gene87676:CDS 35.0%
GATGTTACCTCTAACTATAG+TGG + chr7.1:28742339-28742358 MS.gene87676:CDS 35.0%
GGAGTCATTTCTGTTACATA+AGG + chr7.1:28741655-28741674 MS.gene87676:CDS 35.0%
GTGCCTAAATATTGGAATCA+GGG - chr7.1:28743222-28743241 None:intergenic 35.0%
GTTGCAAAATTTAGGAGTAG+TGG - chr7.1:28741236-28741255 None:intergenic 35.0%
TACTAGAGAATTTCTTGCAG+CGG + chr7.1:28742938-28742957 MS.gene87676:CDS 35.0%
TATGCTCAAACATCACTGAA+GGG + chr7.1:28742604-28742623 MS.gene87676:CDS 35.0%
TCAAAGTAGGCATCACTTAT+GGG - chr7.1:28741830-28741849 None:intergenic 35.0%
TCTTTACCTCACTTTCTAAG+GGG + chr7.1:28743750-28743769 MS.gene87676:CDS 35.0%
TTATGCTCAAACATCACTGA+AGG + chr7.1:28742603-28742622 MS.gene87676:CDS 35.0%
TTCAAAGTAGGCATCACTTA+TGG - chr7.1:28741831-28741850 None:intergenic 35.0%
TTTGCAACTCTTACACTACT+AGG + chr7.1:28741248-28741267 MS.gene87676:CDS 35.0%
! GGTATTCTTCTGTCATTTCT+AGG - chr7.1:28742225-28742244 None:intergenic 35.0%
! TGCAAAGAGCAATTAGTTTC+TGG + chr7.1:28742412-28742431 MS.gene87676:CDS 35.0%
! TGGTCCTTTTCTATAGTAGT+TGG - chr7.1:28742676-28742695 None:intergenic 35.0%
! TTCTGTCATTTCTAGGTACT+CGG - chr7.1:28742218-28742237 None:intergenic 35.0%
!! GGCTTTGGATTTCTATGAAT+TGG + chr7.1:28741753-28741772 MS.gene87676:intron 35.0%
!!! AGTTTTTTCTTCTTCATGGC+AGG + chr7.1:28741588-28741607 MS.gene87676:intron 35.0%
AAAAGCAAGTAGGAAGTCTC+GGG + chr7.1:28743820-28743839 MS.gene87676:CDS 40.0%
ACATGCCAAACAAGAAAGTC+AGG - chr7.1:28742762-28742781 None:intergenic 40.0%
ACTACGGATATGAATCCGAT+GGG + chr7.1:28742983-28743002 MS.gene87676:CDS 40.0%
AGATTTCAAGATTGAGGGTG+AGG + chr7.1:28743654-28743673 MS.gene87676:CDS 40.0%
AGCCGTCGACATTTATTTGA+AGG + chr7.1:28743167-28743186 MS.gene87676:CDS 40.0%
AGCTGGAGATTTCAAGATTG+AGG + chr7.1:28743648-28743667 MS.gene87676:CDS 40.0%
AGTTAGAGGTAACATCTCAC+AGG - chr7.1:28742335-28742354 None:intergenic 40.0%
ATATGTGCCATGGGAAGAAT+GGG + chr7.1:28742544-28742563 MS.gene87676:CDS 40.0%
ATCTCCTCCACTATAGTTAG+AGG - chr7.1:28742349-28742368 None:intergenic 40.0%
ATGCCAAACAAGAAAGTCAG+GGG - chr7.1:28742760-28742779 None:intergenic 40.0%
ATTCCCCTGACTTTCTTGTT+TGG + chr7.1:28742754-28742773 MS.gene87676:CDS 40.0%
CAGAGAGTTATATGTGCCAT+GGG + chr7.1:28742535-28742554 MS.gene87676:CDS 40.0%
CATGCCAAACAAGAAAGTCA+GGG - chr7.1:28742761-28742780 None:intergenic 40.0%
CATGGTTCTCTGCTAAAAGT+AGG + chr7.1:28743021-28743040 MS.gene87676:CDS 40.0%
CTACTATAGAAAAGGACCAG+AGG + chr7.1:28742677-28742696 MS.gene87676:CDS 40.0%
CTATCACAGAGAATAAGCAG+CGG + chr7.1:28743557-28743576 MS.gene87676:CDS 40.0%
CTTGCGATGAAGTTCTGTTA+TGG + chr7.1:28742142-28742161 MS.gene87676:CDS 40.0%
GAAATCGCCAAAAAGCAAGT+AGG + chr7.1:28743810-28743829 MS.gene87676:CDS 40.0%
GCTGGAGATTTCAAGATTGA+GGG + chr7.1:28743649-28743668 MS.gene87676:CDS 40.0%
GTGCATTGTCAACATGAAGT+GGG - chr7.1:28743327-28743346 None:intergenic 40.0%
GTTACCTCTAACTATAGTGG+AGG + chr7.1:28742342-28742361 MS.gene87676:CDS 40.0%
TATATGTGCCATGGGAAGAA+TGG + chr7.1:28742543-28742562 MS.gene87676:CDS 40.0%
TATGCTCGTGTCATAGATGA+TGG + chr7.1:28743135-28743154 MS.gene87676:CDS 40.0%
TCAAAATCTTCAGAGGTCAG+TGG + chr7.1:28742297-28742316 MS.gene87676:CDS 40.0%
TCATCGCAAGTTCAAATGTC+TGG - chr7.1:28742132-28742151 None:intergenic 40.0%
TCCATTAGAACCAATCCCAT+CGG - chr7.1:28743001-28743020 None:intergenic 40.0%
TCTATGACACGAGCATAATC+AGG - chr7.1:28743132-28743151 None:intergenic 40.0%
TGTAGACTTAAGCAAGGATC+AGG - chr7.1:28743081-28743100 None:intergenic 40.0%
TTATACCATCTCTGCAGAGT+GGG + chr7.1:28742881-28742900 MS.gene87676:CDS 40.0%
! AAGCTCCAAGTTTGAAACAC+TGG - chr7.1:28742089-28742108 None:intergenic 40.0%
! ACACTGTGATGGTGAATCTA+AGG + chr7.1:28742447-28742466 MS.gene87676:CDS 40.0%
! AGGATTTTTGCTGATGTTGC+TGG + chr7.1:28741608-28741627 MS.gene87676:intron 40.0%
! ATGGAAGAGCTTTTGTCTGT+TGG - chr7.1:28742733-28742752 None:intergenic 40.0%
! CAAACATCACTGAAGGGTAT+TGG + chr7.1:28742610-28742629 MS.gene87676:CDS 40.0%
! CTTGGTTAGCTAGCTTCAAA+AGG + chr7.1:28741500-28741519 MS.gene87676:intron 40.0%
!! AATTTTAGCAGTCAAGGTGG+AGG + chr7.1:28743788-28743807 MS.gene87676:CDS 40.0%
!! GAGACTTCCTACTTGCTTTT+TGG - chr7.1:28743820-28743839 None:intergenic 40.0%
!! GCAAATTTTAGCAGTCAAGG+TGG + chr7.1:28743785-28743804 MS.gene87676:CDS 40.0%
!! TTGAGATGAGGTTTTGATCC+CGG - chr7.1:28742246-28742265 None:intergenic 40.0%
AAAGCAAGTAGGAAGTCTCG+GGG + chr7.1:28743821-28743840 MS.gene87676:CDS 45.0%
AACTGTGTCCACGTCAAACA+AGG - chr7.1:28742911-28742930 None:intergenic 45.0%
AAGCTCAAGCCTACATGGAA+TGG - chr7.1:28742812-28742831 None:intergenic 45.0%
AGAGAATCGAGAACTGAAGC+TGG + chr7.1:28743631-28743650 MS.gene87676:CDS 45.0%
AGCGCAACTGCTCAAAATAC+AGG - chr7.1:28743499-28743518 None:intergenic 45.0%
ATGGTTGCTGAAGCCAACAA+GGG + chr7.1:28742061-28742080 MS.gene87676:CDS 45.0%
CAAGAAAGTCAGGGGAATGA+TGG - chr7.1:28742752-28742771 None:intergenic 45.0%
CCAGAGAGTTATATGTGCCA+TGG + chr7.1:28742534-28742553 MS.gene87676:CDS 45.0%
CCATGGCACATATAACTCTC+TGG - chr7.1:28742537-28742556 None:intergenic 45.0%
CGCTTAAAAAATGCCGTGTC+GGG + chr7.1:28743515-28743534 MS.gene87676:CDS 45.0%
CTTATACCATCTCTGCAGAG+TGG + chr7.1:28742880-28742899 MS.gene87676:CDS 45.0%
CTTTCAAGCTCAAGCCTACA+TGG - chr7.1:28742817-28742836 None:intergenic 45.0%
GACTACGGATATGAATCCGA+TGG + chr7.1:28742982-28743001 MS.gene87676:CDS 45.0%
GCGCTTAAAAAATGCCGTGT+CGG + chr7.1:28743514-28743533 MS.gene87676:CDS 45.0%
GCTTAAAAAATGCCGTGTCG+GGG + chr7.1:28743516-28743535 MS.gene87676:CDS 45.0%
GGAAATAAAGGATGAGTGCG+TGG + chr7.1:28742468-28742487 MS.gene87676:CDS 45.0%
GGATATGAATCCGATGGGAT+TGG + chr7.1:28742988-28743007 MS.gene87676:CDS 45.0%
GGGTTCCAGTGTTTCAAACT+TGG + chr7.1:28742081-28742100 MS.gene87676:CDS 45.0%
GGTGCATTGTCAACATGAAG+TGG - chr7.1:28743328-28743347 None:intergenic 45.0%
GGTTCATCTGTAGTTTCCCT+TGG + chr7.1:28742012-28742031 MS.gene87676:intron 45.0%
GTAGGCTTGAGCTTGAAAGA+AGG + chr7.1:28742818-28742837 MS.gene87676:CDS 45.0%
TATACCATCTCTGCAGAGTG+GGG + chr7.1:28742882-28742901 MS.gene87676:CDS 45.0%
TATGTGCCATGGGAAGAATG+GGG + chr7.1:28742545-28742564 MS.gene87676:CDS 45.0%
TCCTATCCCCTTAGAAAGTG+AGG - chr7.1:28743759-28743778 None:intergenic 45.0%
TGAAACACTGGAACCCTTGT+TGG - chr7.1:28742077-28742096 None:intergenic 45.0%
TGGTGTCCTCCTGGAAAATT+GGG - chr7.1:28742112-28742131 None:intergenic 45.0%
TGTTGGCATGAGGTTGACAA+TGG - chr7.1:28742716-28742735 None:intergenic 45.0%
TTACCCTAAGTGGGAAGATC+CGG + chr7.1:28742035-28742054 MS.gene87676:CDS 45.0%
TTCCCACTTAGGGTAACCAA+GGG - chr7.1:28742031-28742050 None:intergenic 45.0%
TTCCCTTGGTTACCCTAAGT+GGG + chr7.1:28742026-28742045 MS.gene87676:CDS 45.0%
TTTCCCTTGGTTACCCTAAG+TGG + chr7.1:28742025-28742044 MS.gene87676:CDS 45.0%
! ACCTCACTTTCTAAGGGGAT+AGG + chr7.1:28743755-28743774 MS.gene87676:CDS 45.0%
! AGCTTTTGTCTGTTGGCATG+AGG - chr7.1:28742726-28742745 None:intergenic 45.0%
! TTGGAGCTTCCCAATTTTCC+AGG + chr7.1:28742100-28742119 MS.gene87676:CDS 45.0%
!! GGGATTGGTTCTAATGGACA+TGG + chr7.1:28743003-28743022 MS.gene87676:CDS 45.0%
!! TCCGATGGGATTGGTTCTAA+TGG + chr7.1:28742997-28743016 MS.gene87676:CDS 45.0%
!! TTTCTTGCAGCGGATTGAAG+AGG + chr7.1:28742948-28742967 MS.gene87676:CDS 45.0%
AAAGGACCAGAGGACAACTG+TGG + chr7.1:28742687-28742706 MS.gene87676:CDS 50.0%
AAGTGGGAAGATCCGGAAGA+TGG + chr7.1:28742042-28742061 MS.gene87676:CDS 50.0%
ACCATGCTGCACAGAATGAC+AGG + chr7.1:28743447-28743466 MS.gene87676:CDS 50.0%
ACTTGTACCACCATCTGCAG+TGG - chr7.1:28743476-28743495 None:intergenic 50.0%
AGGGGAAAAATGGCAGGAGT+AGG + chr7.1:28743849-28743868 MS.gene87676:CDS 50.0%
AGTGATGCGTAGTTGTCCCT+AGG - chr7.1:28743605-28743624 None:intergenic 50.0%
ATGTGCCATGGGAAGAATGG+GGG + chr7.1:28742546-28742565 MS.gene87676:CDS 50.0%
CTCAAGCCTACATGGAATGG+TGG - chr7.1:28742809-28742828 None:intergenic 50.0%
CTGGTGTCCTCCTGGAAAAT+TGG - chr7.1:28742113-28742132 None:intergenic 50.0%
CTTCCCACTTAGGGTAACCA+AGG - chr7.1:28742032-28742051 None:intergenic 50.0%
CTTCCGGATCTTCCCACTTA+GGG - chr7.1:28742041-28742060 None:intergenic 50.0%
GAACAGAGGGGAAAAATGGC+AGG + chr7.1:28743843-28743862 MS.gene87676:CDS 50.0%
GAGGAAGAAGCGGAAGACTA+CGG + chr7.1:28742967-28742986 MS.gene87676:CDS 50.0%
GATGGTTGCTGAAGCCAACA+AGG + chr7.1:28742060-28742079 MS.gene87676:CDS 50.0%
GCACCTCTTTCCCTTTGTTC+AGG + chr7.1:28743343-28743362 MS.gene87676:intron 50.0%
GCTGTATGGGCCTGAACAAA+GGG - chr7.1:28743356-28743375 None:intergenic 50.0%
GTAGTTGTCCCTAGGAGACA+TGG - chr7.1:28743597-28743616 None:intergenic 50.0%
TAAAGGATGAGTGCGTGGCA+TGG + chr7.1:28742473-28742492 MS.gene87676:CDS 50.0%
TCAAATGTCTGGTGTCCTCC+TGG - chr7.1:28742121-28742140 None:intergenic 50.0%
TCTAACCCCCATTCTTCCCA+TGG - chr7.1:28742554-28742573 None:intergenic 50.0%
TCTTCCGGATCTTCCCACTT+AGG - chr7.1:28742042-28742061 None:intergenic 50.0%
TGCTGTATGGGCCTGAACAA+AGG - chr7.1:28743357-28743376 None:intergenic 50.0%
TGGCTTCAGCAACCATCTTC+CGG - chr7.1:28742057-28742076 None:intergenic 50.0%
TGGTTTCCACAGTTGTCCTC+TGG - chr7.1:28742696-28742715 None:intergenic 50.0%
TTGACGTGGACACAGTTCAC+AGG + chr7.1:28742914-28742933 MS.gene87676:CDS 50.0%
! GAGCTTCCCAATTTTCCAGG+AGG + chr7.1:28742103-28742122 MS.gene87676:CDS 50.0%
! GCGGATTGAAGAGGAAGAAG+CGG + chr7.1:28742957-28742976 MS.gene87676:CDS 50.0%
! TAGGTGCCACCATTCCATGT+AGG + chr7.1:28742800-28742819 MS.gene87676:CDS 50.0%
ACTCGGCTGCACAACGTAGT+CGG - chr7.1:28742201-28742220 None:intergenic 55.0%
AGGAAGTCTCGGGGAACAGA+GGG + chr7.1:28743830-28743849 MS.gene87676:CDS 55.0%
ATCTCCTGAACTCCCCGACA+CGG - chr7.1:28743531-28743550 None:intergenic 55.0%
CGGGGAACAGAGGGGAAAAA+TGG + chr7.1:28743839-28743858 MS.gene87676:CDS 55.0%
CTAGGAGACATGGCTGCACT+CGG - chr7.1:28743587-28743606 None:intergenic 55.0%
GAGTGCAGCCATGTCTCCTA+GGG + chr7.1:28743586-28743605 MS.gene87676:CDS 55.0%
GCCTGTCATTCTGTGCAGCA+TGG - chr7.1:28743451-28743470 None:intergenic 55.0%
GGGACAACTACGCATCACTG+CGG + chr7.1:28743606-28743625 MS.gene87676:CDS 55.0%
GGGCCTGAACAAAGGGAAAG+AGG - chr7.1:28743349-28743368 None:intergenic 55.0%
TAGGAAGTCTCGGGGAACAG+AGG + chr7.1:28743829-28743848 MS.gene87676:CDS 55.0%
TGACAGGCTTCCACTGCAGA+TGG + chr7.1:28743463-28743482 MS.gene87676:CDS 55.0%
TGTCGGGGAGTTCAGGAGAT+GGG + chr7.1:28743531-28743550 MS.gene87676:CDS 55.0%
! GAGGCTGAGTGAGTTGGAGA+AGG + chr7.1:28743673-28743692 MS.gene87676:CDS 55.0%
! TGGGGACTCCTTGTTTGACG+TGG + chr7.1:28742900-28742919 MS.gene87676:CDS 55.0%
AATGCCGTGTCGGGGAGTTC+AGG + chr7.1:28743524-28743543 MS.gene87676:CDS 60.0%
AGGATGAGTGCGTGGCATGG+TGG + chr7.1:28742476-28742495 MS.gene87676:CDS 60.0%
CAGGCTTCCACTGCAGATGG+TGG + chr7.1:28743466-28743485 MS.gene87676:CDS 60.0%
CGAGTGCAGCCATGTCTCCT+AGG + chr7.1:28743585-28743604 MS.gene87676:CDS 60.0%
CTCGGCTGCACAACGTAGTC+GGG - chr7.1:28742200-28742219 None:intergenic 60.0%
GAGGGTGAGGCTGAGTGAGT+TGG + chr7.1:28743667-28743686 MS.gene87676:CDS 60.0%
GAGTCCCCACTCTGCAGAGA+TGG - chr7.1:28742889-28742908 None:intergenic 60.0%
GGAAGTCTCGGGGAACAGAG+GGG + chr7.1:28743831-28743850 MS.gene87676:CDS 60.0%
GTGTCGGGGAGTTCAGGAGA+TGG + chr7.1:28743530-28743549 MS.gene87676:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 28741187 28743889 28741187 ID=MS.gene87676
chr7.1 mRNA 28741187 28743889 28741187 ID=MS.gene87676.t1;Parent=MS.gene87676
chr7.1 exon 28741187 28741269 28741187 ID=MS.gene87676.t1.exon1;Parent=MS.gene87676.t1
chr7.1 CDS 28741187 28741269 28741187 ID=cds.MS.gene87676.t1;Parent=MS.gene87676.t1
chr7.1 exon 28741610 28741676 28741610 ID=MS.gene87676.t1.exon2;Parent=MS.gene87676.t1
chr7.1 CDS 28741610 28741676 28741610 ID=cds.MS.gene87676.t1;Parent=MS.gene87676.t1
chr7.1 exon 28742025 28743188 28742025 ID=MS.gene87676.t1.exon3;Parent=MS.gene87676.t1
chr7.1 CDS 28742025 28743188 28742025 ID=cds.MS.gene87676.t1;Parent=MS.gene87676.t1
chr7.1 exon 28743365 28743889 28743365 ID=MS.gene87676.t1.exon4;Parent=MS.gene87676.t1
chr7.1 CDS 28743365 28743889 28743365 ID=cds.MS.gene87676.t1;Parent=MS.gene87676.t1
Gene Sequence

>MS.gene87676

ATGGTTTCTGAAAACTCACTCTCTTCTTCTAAGCACTCTTCTACTACCACTACTCCTAAATTTTGCAACTCTTACACTACTAGGTACTTCAGTAATAAGGCTAAACTACCTCTTATTTATCTTTATGCTTCTTAATTGGTTCTTTTTTTTTTTTTTTTTTTACCATATTATGTGTCTTATTCTGTATTATATGAGAGTCTTTCTTTACTTCATTTTATAGTAGCTTAAACATGTAACTTATGTGCTTTTTTATAAGAGGTTAATTTTATTCAAGTTCTGTCTTACTTCTGTTTGTAGTTTGTAAATTTGATAGCTTGGTTAGCTAGCTTCAAAAGGAACTTTTTATCAAATATAAATGTATGTTGTTTTTCTTGATGAGCTTTTGTGTTCATTGTGAAATCAGTTTTTTCTTCTTCATGGCAGGATTTTTGCTGATGTTGCTGGTGACATTACAATTGTCGTTGATGGGGAGTCATTTCTGTTACATAAGGTAAAAATTTCAACATTCCTAACCTTGCATTAGTCATATTAAATTGCAAGTTTTATATGATAATTTTGGTTATTATGGCTTTGGATTTCTATGAATTGGGATGTAATTGAATGCCTTTGAATCCATAAATATGTTAACATGAATTATTTACCCATAAGTGATGCCTACTTTGAAATATTAAAGAAAAAAGTTAATGTCTTCCATCTTTTGAATACTCACATTAGCTGCACTGATCAACTCAAGACTATTCGGATACTGTCATAAATTTTTAAAGAAACAAAAGTTACTTTGAACTCAAAACAAACAAAATGTACTAACAGCTAATTTGTTGTAATGGTTCATCTGTAGTTTCCCTTGGTTACCCTAAGTGGGAAGATCCGGAAGATGGTTGCTGAAGCCAACAAGGGTTCCAGTGTTTCAAACTTGGAGCTTCCCAATTTTCCAGGAGGACACCAGACATTTGAACTTGCGATGAAGTTCTGTTATGGTATGAATTTCGAGATAACGACATTTAATGTTGCCCGACTACGTTGTGCAGCCGAGTACCTAGAAATGACAGAAGAATACCGGGATCAAAACCTCATCTCAAGAACAGATATTTATCTGAGTGAGATTGTCTTTCAAAATCTTCAGAGGTCAGTGGAAGTTCTATCTACCTGTGAGATGTTACCTCTAACTATAGTGGAGGAGATAGAAATCACAAAAGGATCTGTGGAAGCTATTGCAATGAATGCTTGCAAAGAGCAATTAGTTTCTGGTTTATCTAAATTACACTGTGATGGTGAATCTAAGGAAATAAAGGATGAGTGCGTGGCATGGTGGATTGAAGATCTCTCGATACTGCGTATCGATTTCTACCAGAGAGTTATATGTGCCATGGGAAGAATGGGGGTTAGATCAGACAACATTATTGCTTCACTAATGCATTATGCTCAAACATCACTGAAGGGTATTGGAAAGTGTCAATTATGGAATCAATCAAGGACAAATTCAAGTCCAACTACTATAGAAAAGGACCAGAGGACAACTGTGGAAACCATTGTCAACCTCATGCCAACAGACAAAAGCTCTTCCATCATTCCCCTGACTTTCTTGTTTGGCATGTTAAAGATGGCTATCATGTTAGGTGCCACCATTCCATGTAGGCTTGAGCTTGAAAGAAGGATATCATTAAGGTTGGAAATGGTTTCACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGGGACTCCTTGTTTGACGTGGACACAGTTCACAGGCTACTAGAGAATTTCTTGCAGCGGATTGAAGAGGAAGAAGCGGAAGACTACGGATATGAATCCGATGGGATTGGTTCTAATGGACATGGTTCTCTGCTAAAAGTAGGTCAGCTTATTGATGCTTTTTTAGCAGAAGTTGCTCCTGATCCTTGCTTAAGTCTACAGAAATTCATCGCTTTGATTGAGATACTTCCTGATTATGCTCGTGTCATAGATGATGGTCTTTATAGAGCCGTCGACATTTATTTGAAGGTAATTTTTTTTACTGTAGATAAGATATTTCCCTGATTCCAATATTTAGGCACTTAATTGTCAAACCATATTCTCAATCTTGCAAAAGTTACACATACAAAACTAATCAGTTGTTTCTGTTTGTTATTCACTTTTCCCACTTCATGTTGACAATGCACCTCTTTCCCTTTGTTCAGGCCCATACAGCATTAACAGAACAAGAATGCAAGAAACTTTGCAAGTTTATAGACTGTCAGAAGCTGTCACAAGAAGCATGCAACCATGCTGCACAGAATGACAGGCTTCCACTGCAGATGGTGGTACAAGTCCTGTATTTTGAGCAGTTGCGCTTAAAAAATGCCGTGTCGGGGAGTTCAGGAGATGGGCTGCTATCACAGAGAATAAGCAGCGGTGTTCCGAGTGCAGCCATGTCTCCTAGGGACAACTACGCATCACTGCGGAGAGAGAATCGAGAACTGAAGCTGGAGATTTCAAGATTGAGGGTGAGGCTGAGTGAGTTGGAGAAGGAGCAAATGTTCATGAAACAAGGCATGATTGATAAAGCAGAAAATGGAAAAACTTTCTTTACCTCACTTTCTAAGGGGATAGGAAGAATTGCAAATTTTAGCAGTCAAGGTGGAGGAAATCGCCAAAAAGCAAGTAGGAAGTCTCGGGGAACAGAGGGGAAAAATGGCAGGAGTAGGAGATATTCTCTCTCATAG
Protein sequence

>MS.gene87676.t1

MVSENSLSSSKHSSTTTTPKFCNSYTTRIFADVAGDITIVVDGESFLLHKFPLVTLSGKIRKMVAEANKGSSVSNLELPNFPGGHQTFELAMKFCYGMNFEITTFNVARLRCAAEYLEMTEEYRDQNLISRTDIYLSEIVFQNLQRSVEVLSTCEMLPLTIVEEIEITKGSVEAIAMNACKEQLVSGLSKLHCDGESKEIKDECVAWWIEDLSILRIDFYQRVICAMGRMGVRSDNIIASLMHYAQTSLKGIGKCQLWNQSRTNSSPTTIEKDQRTTVETIVNLMPTDKSSSIIPLTFLFGMLKMAIMLGATIPCRLELERRISLRLEMVSLDDLLIPSLQSGDSLFDVDTVHRLLENFLQRIEEEEAEDYGYESDGIGSNGHGSLLKVGQLIDAFLAEVAPDPCLSLQKFIALIEILPDYARVIDDGLYRAVDIYLKAHTALTEQECKKLCKFIDCQKLSQEACNHAAQNDRLPLQMVVQVLYFEQLRLKNAVSGSSGDGLLSQRISSGVPSAAMSPRDNYASLRRENRELKLEISRLRVRLSELEKEQMFMKQGMIDKAENGKTFFTSLSKGIGRIANFSSQGGGNRQKASRKSRGTEGKNGRSRRYSLS