Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87793.t1 | XP_013457255.1 | 90.9 | 143 | 9 | 1 | 78 | 220 | 226 | 364 | 1.90E-64 | 256.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87793.t1 | Q9SR73 | 79.7 | 59 | 12 | 0 | 15 | 73 | 1 | 59 | 3.5e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87793.t1 | A0A072UPJ0 | 90.9 | 143 | 9 | 1 | 78 | 220 | 226 | 364 | 1.3e-64 | 256.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051328 | MS.gene87793 | 0.820469 | 6.75E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87793.t1 | MTR_4g094378 | 90.909 | 143 | 9 | 1 | 78 | 220 | 226 | 364 | 2.31e-83 | 266 |
| MS.gene87793.t1 | MTR_6g013410 | 88.235 | 68 | 8 | 0 | 6 | 73 | 29 | 96 | 4.82e-35 | 122 |
| MS.gene87793.t1 | MTR_6g013210 | 81.667 | 60 | 10 | 1 | 15 | 73 | 1 | 60 | 4.92e-26 | 97.8 |
| MS.gene87793.t1 | MTR_4g081180 | 75.410 | 61 | 14 | 1 | 14 | 73 | 149 | 209 | 7.36e-22 | 91.3 |
| MS.gene87793.t1 | MTR_8g089765 | 59.091 | 66 | 26 | 1 | 15 | 79 | 1 | 66 | 3.53e-16 | 73.2 |
| MS.gene87793.t1 | MTR_3g110690 | 31.452 | 124 | 82 | 2 | 97 | 220 | 209 | 329 | 1.97e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87793.t1 | AT5G03850 | 79.661 | 59 | 12 | 0 | 15 | 73 | 1 | 59 | 2.00e-26 | 99.0 |
| MS.gene87793.t1 | AT3G10090 | 79.661 | 59 | 12 | 0 | 15 | 73 | 1 | 59 | 2.00e-26 | 99.0 |
| MS.gene87793.t1 | AT5G64140 | 79.661 | 59 | 12 | 0 | 15 | 73 | 1 | 59 | 1.50e-25 | 96.7 |
| MS.gene87793.t1 | AT1G09980 | 29.710 | 138 | 84 | 3 | 97 | 234 | 254 | 378 | 2.14e-12 | 67.8 |
| MS.gene87793.t1 | AT1G09980 | 29.710 | 138 | 85 | 3 | 97 | 234 | 254 | 379 | 1.23e-11 | 65.5 |
| MS.gene87793.t1 | AT1G09980 | 29.710 | 138 | 85 | 3 | 97 | 234 | 254 | 379 | 1.23e-11 | 65.5 |
Find 61 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACAGAAACCTCATTA+AGG | 0.282926 | 7.1:+30887073 | MS.gene87793:CDS |
| CGAGGTGTTGGAGACTTTAA+AGG | 0.284584 | 7.1:+30886380 | MS.gene87793:CDS |
| TTGAATCAGATGATACAAAA+TGG | 0.314689 | 7.1:+30885793 | MS.gene87793:CDS |
| AATCACCTCAGCTGCCTGAT+AGG | 0.328592 | 7.1:+30885862 | MS.gene87793:CDS |
| AATGGCTTTCAAAGAAATTC+TGG | 0.330800 | 7.1:+30887013 | MS.gene87793:CDS |
| AGATGATCATCCCAAGAAAA+AGG | 0.335417 | 7.1:-30886043 | None:intergenic |
| TTCAAAGAAATTCTGGTGTA+TGG | 0.345817 | 7.1:+30887020 | MS.gene87793:CDS |
| ATGACATCTCCTTCTCTAAT+GGG | 0.349028 | 7.1:-30885234 | None:intergenic |
| GAATGTTATCAAATCTAGTA+TGG | 0.367829 | 7.1:+30886356 | MS.gene87793:CDS |
| AATGACATCTCCTTCTCTAA+TGG | 0.375631 | 7.1:-30885235 | None:intergenic |
| ATTGTTCACCATCAATACTT+TGG | 0.404100 | 7.1:-30885842 | None:intergenic |
| GCACTGACTTCTTCCCTATC+AGG | 0.404605 | 7.1:-30885876 | None:intergenic |
| CGAATCAGCTCTTATATCTC+TGG | 0.407257 | 7.1:+30886089 | MS.gene87793:CDS |
| CCATCACCGTTTCTAATACC+TGG | 0.407808 | 7.1:+30884605 | MS.gene87793:CDS |
| AAAGAGGTCTCAAGCTGATC+TGG | 0.413538 | 7.1:+30887469 | MS.gene87793:CDS |
| CGCTCAAGTTGAGAAAGTTA+TGG | 0.416411 | 7.1:+30885125 | MS.gene87793:CDS |
| TGAATTGTACCAGTGATTGT+AGG | 0.436134 | 7.1:+30885432 | MS.gene87793:CDS |
| GCACGTGTCCAAAGTATTGA+TGG | 0.455150 | 7.1:+30885834 | MS.gene87793:CDS |
| AACCTGAGTGACCTGTCCTC+TGG | 0.457012 | 7.1:-30885160 | None:intergenic |
| ATCTAGTATGGACGAGGTGT+TGG | 0.458035 | 7.1:+30886368 | MS.gene87793:CDS |
| AATTACCTTGACACGTTCCC+AGG | 0.464678 | 7.1:-30884623 | None:intergenic |
| GCTCAAGTTGAGAAAGTTAT+GGG | 0.472061 | 7.1:+30885126 | MS.gene87793:CDS |
| GAATTGTACCAGTGATTGTA+GGG | 0.482664 | 7.1:+30885433 | MS.gene87793:CDS |
| GAGAAAGTTATGGGTCGTAC+TGG | 0.491245 | 7.1:+30885135 | MS.gene87793:CDS |
| TTTCAGTCAAATCAATAGCT+TGG | 0.497020 | 7.1:-30885764 | None:intergenic |
| CTTCTCTCTCAGACTCAAGT+AGG | 0.499699 | 7.1:-30885260 | None:intergenic |
| ATCACCTCAGCTGCCTGATA+GGG | 0.508140 | 7.1:+30885863 | MS.gene87793:CDS |
| ATGTATTTCTGAAATTCCAC+AGG | 0.508977 | 7.1:+30886113 | MS.gene87793:CDS |
| AATTACGCTGAAGATTATGT+TGG | 0.515085 | 7.1:+30885467 | MS.gene87793:CDS |
| TTCTGAATCCCTACAATCAC+TGG | 0.517218 | 7.1:-30885441 | None:intergenic |
| TCAATACTTTGGACACGTGC+TGG | 0.518051 | 7.1:-30885831 | None:intergenic |
| ATTACGCTGAAGATTATGTT+GGG | 0.519193 | 7.1:+30885468 | MS.gene87793:CDS |
| GATGCTCATCAAAGCATTGA+TGG | 0.522659 | 7.1:+30885689 | MS.gene87793:CDS |
| CATCACCGTTTCTAATACCT+GGG | 0.551690 | 7.1:+30884606 | MS.gene87793:CDS |
| TGAGGTTTCTGTTGAAGCAG+AGG | 0.561573 | 7.1:-30887067 | None:intergenic |
| TCTAGGAGTAAACCTTAATG+AGG | 0.562962 | 7.1:-30887085 | None:intergenic |
| AAAAGGTTGAACTGATTCCT+CGG | 0.567378 | 7.1:-30886026 | None:intergenic |
| TAATACCTGGGAACGTGTCA+AGG | 0.569738 | 7.1:+30884618 | MS.gene87793:CDS |
| GTATTAGTTGATCAAAGCAA+TGG | 0.574383 | 7.1:+30886995 | MS.gene87793:intron |
| ACGTTCCCAGGTATTAGAAA+CGG | 0.576633 | 7.1:-30884611 | None:intergenic |
| TTCTCTCTCAGACTCAAGTA+GGG | 0.583168 | 7.1:-30885259 | None:intergenic |
| TTAAAGGATATTCAAAGCGA+CGG | 0.599165 | 7.1:+30886396 | MS.gene87793:CDS |
| CCAGGTATTAGAAACGGTGA+TGG | 0.600398 | 7.1:-30884605 | None:intergenic |
| TCGTACTGGATCCAGAGGAC+AGG | 0.601747 | 7.1:+30885149 | MS.gene87793:CDS |
| ATCCAGAGGACAGGTCACTC+AGG | 0.602839 | 7.1:+30885158 | MS.gene87793:CDS |
| ATGAGAATCGCTACATCATG+AGG | 0.604858 | 7.1:+30885199 | MS.gene87793:CDS |
| GTGAAGGGCCCCATTAGAGA+AGG | 0.605680 | 7.1:+30885225 | MS.gene87793:CDS |
| CAGGTATTAGAAACGGTGAT+GGG | 0.615604 | 7.1:-30884604 | None:intergenic |
| TCTTCCCTATCAGGCAGCTG+AGG | 0.617695 | 7.1:-30885867 | None:intergenic |
| GATCTGAGAAGAATAAGCAC+AGG | 0.617744 | 7.1:+30885735 | MS.gene87793:CDS |
| ATACTTTGGACACGTGCTGG+TGG | 0.624157 | 7.1:-30885828 | None:intergenic |
| CTACATCATGAGGAATGTGA+AGG | 0.633338 | 7.1:+30885209 | MS.gene87793:CDS |
| TGACATCTCCTTCTCTAATG+GGG | 0.633980 | 7.1:-30885233 | None:intergenic |
| AGATTATGTTGGGTCAAACA+AGG | 0.639267 | 7.1:+30885478 | MS.gene87793:CDS |
| TACATCATGAGGAATGTGAA+GGG | 0.640443 | 7.1:+30885210 | MS.gene87793:CDS |
| TATCAAATCTAGTATGGACG+AGG | 0.649249 | 7.1:+30886362 | MS.gene87793:CDS |
| TAATATCAATTATCTAACCG+AGG | 0.655534 | 7.1:+30886009 | MS.gene87793:CDS |
| AGTGATTGTAGGGATTCAGA+AGG | 0.662074 | 7.1:+30885443 | MS.gene87793:CDS |
| ATGGGTCGTACTGGATCCAG+AGG | 0.663896 | 7.1:+30885144 | MS.gene87793:CDS |
| TAAGCATAAAAGTCAACCTG+AGG | 0.686020 | 7.1:+30886419 | MS.gene87793:CDS |
| TAGGGAAGAAGTCAGTGCCG+TGG | 0.704921 | 7.1:+30885881 | MS.gene87793:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACATAAATAAGTTA+TGG | - | chr7.1:30885363-30885382 | None:intergenic | 10.0% |
| !! | AAAATAAGAAAAACAAATTA+TGG | - | chr7.1:30887437-30887456 | None:intergenic | 10.0% |
| !! | TTAAATAATTATTTAGACAT+AGG | - | chr7.1:30886147-30886166 | None:intergenic | 10.0% |
| !!! | ATATTATAATTTTTAATGCA+AGG | + | chr7.1:30886304-30886323 | MS.gene87793:intron | 10.0% |
| !!! | TTTTAGTGTTTTAATTTTTT+GGG | + | chr7.1:30886956-30886975 | MS.gene87793:intron | 10.0% |
| !! | TTAAAAACAAACATCATATA+TGG | - | chr7.1:30884678-30884697 | None:intergenic | 15.0% |
| !!! | ATAATTTTTGTACTACTTAA+AGG | + | chr7.1:30886751-30886770 | MS.gene87793:intron | 15.0% |
| !!! | ATGTTTTATTTTATCTGATA+TGG | + | chr7.1:30887043-30887062 | MS.gene87793:CDS | 15.0% |
| !!! | CTATATTGATAATTTTTTCT+TGG | + | chr7.1:30886262-30886281 | MS.gene87793:intron | 15.0% |
| !!! | GTTTTAGTGTTTTAATTTTT+TGG | + | chr7.1:30886955-30886974 | MS.gene87793:intron | 15.0% |
| !!! | TGTTGATTTTATATGAATTT+GGG | + | chr7.1:30887209-30887228 | MS.gene87793:intron | 15.0% |
| !!! | TTGTTGATTTTATATGAATT+TGG | + | chr7.1:30887208-30887227 | MS.gene87793:intron | 15.0% |
| !!! | TTTTTAATATAAAAGGAAAG+AGG | + | chr7.1:30887453-30887472 | MS.gene87793:intron | 15.0% |
| !! | AATTAAAACACTAAAACAGA+AGG | - | chr7.1:30886952-30886971 | None:intergenic | 20.0% |
| !! | AATTTGGGAATAAAAATGTT+TGG | + | chr7.1:30887224-30887243 | MS.gene87793:intron | 20.0% |
| !! | ATTAAAACACTAAAACAGAA+GGG | - | chr7.1:30886951-30886970 | None:intergenic | 20.0% |
| !! | TAAACTTAATAGTATGATCT+AGG | - | chr7.1:30887105-30887124 | None:intergenic | 20.0% |
| !! | TCATATAAAATCAACAACAA+GGG | - | chr7.1:30887205-30887224 | None:intergenic | 20.0% |
| !! | TGAAATGTTGAAAACTATAA+AGG | - | chr7.1:30886584-30886603 | None:intergenic | 20.0% |
| !! | TTCATATAAAATCAACAACA+AGG | - | chr7.1:30887206-30887225 | None:intergenic | 20.0% |
| !!! | ACTTAAATCTTTTCTTAAAC+AGG | + | chr7.1:30885976-30885995 | MS.gene87793:intron | 20.0% |
| !!! | ATTCTGTTTATTTTTGTTGT+TGG | + | chr7.1:30884991-30885010 | MS.gene87793:intron | 20.0% |
| ! | AACATTGACATTGAAAGAAT+AGG | - | chr7.1:30885908-30885927 | None:intergenic | 25.0% |
| ! | ACAAAAATAAACAGAATTGC+TGG | - | chr7.1:30884988-30885007 | None:intergenic | 25.0% |
| ! | ACAGTTAAAACAATATAGTG+TGG | - | chr7.1:30885395-30885414 | None:intergenic | 25.0% |
| ! | ACGTAAATCTATAACATCTT+TGG | - | chr7.1:30887326-30887345 | None:intergenic | 25.0% |
| ! | ATCAACAAAATTCGATATGT+CGG | - | chr7.1:30886915-30886934 | None:intergenic | 25.0% |
| ! | CAAAAATAAACAGAATTGCT+GGG | - | chr7.1:30884987-30885006 | None:intergenic | 25.0% |
| ! | CGTAAATCTATAACATCTTT+GGG | - | chr7.1:30887325-30887344 | None:intergenic | 25.0% |
| ! | GAAGAAGAAACAATGATTTA+TGG | - | chr7.1:30886202-30886221 | None:intergenic | 25.0% |
| ! | GAATGTTATCAAATCTAGTA+TGG | + | chr7.1:30886356-30886375 | MS.gene87793:CDS | 25.0% |
| ! | TAATATCAATTATCTAACCG+AGG | + | chr7.1:30886009-30886028 | MS.gene87793:CDS | 25.0% |
| ! | TTGAATCAGATGATACAAAA+TGG | + | chr7.1:30885793-30885812 | MS.gene87793:CDS | 25.0% |
| ! | TTGCTCAAAATATTTGAATC+AGG | - | chr7.1:30886510-30886529 | None:intergenic | 25.0% |
| !! | CTTGGTTTGAGATTTATATT+TGG | + | chr7.1:30886280-30886299 | MS.gene87793:intron | 25.0% |
| !! | TCTCATTTTCAAAAGTTATC+TGG | - | chr7.1:30886651-30886670 | None:intergenic | 25.0% |
| !!! | AATGCTTTTTTTTTGTGTGA+AGG | + | chr7.1:30885544-30885563 | MS.gene87793:intron | 25.0% |
| !!! | ATCTAGTTCTAGCTATTATA+TGG | - | chr7.1:30887174-30887193 | None:intergenic | 25.0% |
| !!! | ATTGTTTCTGCATTATGTTT+TGG | + | chr7.1:30884712-30884731 | MS.gene87793:intron | 25.0% |
| !!! | GTTTTAACTGTTGAATGATA+TGG | + | chr7.1:30885404-30885423 | MS.gene87793:intron | 25.0% |
| AAGATGAAGTTTCATAACCA+AGG | - | chr7.1:30886701-30886720 | None:intergenic | 30.0% | |
| AATGGCTTTCAAAGAAATTC+TGG | + | chr7.1:30887013-30887032 | MS.gene87793:CDS | 30.0% | |
| AATTACGCTGAAGATTATGT+TGG | + | chr7.1:30885467-30885486 | MS.gene87793:CDS | 30.0% | |
| ATATTTGAATCAGGTGATAG+TGG | - | chr7.1:30886501-30886520 | None:intergenic | 30.0% | |
| ATGTTAAATAGCTGCAATAG+TGG | + | chr7.1:30884801-30884820 | MS.gene87793:intron | 30.0% | |
| ATTACGCTGAAGATTATGTT+GGG | + | chr7.1:30885468-30885487 | MS.gene87793:CDS | 30.0% | |
| ATTGTTCACCATCAATACTT+TGG | - | chr7.1:30885845-30885864 | None:intergenic | 30.0% | |
| CAGTTTGATAAAGAATGCAT+GGG | - | chr7.1:30886607-30886626 | None:intergenic | 30.0% | |
| CTAATGATCAAACTCAAATC+AGG | + | chr7.1:30885665-30885684 | MS.gene87793:intron | 30.0% | |
| GAGAAAAACTACTCTTCTAT+CGG | - | chr7.1:30885296-30885315 | None:intergenic | 30.0% | |
| GGGAATAAAAATGTTTGGTT+AGG | + | chr7.1:30887229-30887248 | MS.gene87793:intron | 30.0% | |
| GTATTAGTTGATCAAAGCAA+TGG | + | chr7.1:30886995-30887014 | MS.gene87793:intron | 30.0% | |
| TAGATGATATAAAGTTGCCT+TGG | + | chr7.1:30886681-30886700 | MS.gene87793:intron | 30.0% | |
| TCAGTTTGATAAAGAATGCA+TGG | - | chr7.1:30886608-30886627 | None:intergenic | 30.0% | |
| TTAAAGGATATTCAAAGCGA+CGG | + | chr7.1:30886396-30886415 | MS.gene87793:CDS | 30.0% | |
| TTAGAAATGTCAATTACCTC+AGG | - | chr7.1:30886438-30886457 | None:intergenic | 30.0% | |
| TTCAAAGAAATTCTGGTGTA+TGG | + | chr7.1:30887020-30887039 | MS.gene87793:CDS | 30.0% | |
| TTTCAGTCAAATCAATAGCT+TGG | - | chr7.1:30885767-30885786 | None:intergenic | 30.0% | |
| ! | AATCAGTTCAACCTTTTTCT+TGG | + | chr7.1:30886032-30886051 | MS.gene87793:CDS | 30.0% |
| ! | AGAAGAGTAGTTTTTCTCAA+TGG | + | chr7.1:30885298-30885317 | MS.gene87793:intron | 30.0% |
| ! | AGTAGTTTTTCTCAATGGTT+TGG | + | chr7.1:30885303-30885322 | MS.gene87793:intron | 30.0% |
| ! | ATCAGTTCAACCTTTTTCTT+GGG | + | chr7.1:30886033-30886052 | MS.gene87793:CDS | 30.0% |
| ! | GTTAGGTTGTAATTATGTTG+TGG | + | chr7.1:30887246-30887265 | MS.gene87793:intron | 30.0% |
| !! | ATGTATTTCTGAAATTCCAC+AGG | + | chr7.1:30886113-30886132 | MS.gene87793:CDS | 30.0% |
| !! | TTATGGAAAAAAGTGCTACA+AGG | - | chr7.1:30886185-30886204 | None:intergenic | 30.0% |
| !!! | AATTTTTTGGGTTGTGATTC+AGG | + | chr7.1:30886968-30886987 | MS.gene87793:intron | 30.0% |
| AATGACATCTCCTTCTCTAA+TGG | - | chr7.1:30885238-30885257 | None:intergenic | 35.0% | |
| ACATTGAAAGAATAGGACCA+CGG | - | chr7.1:30885901-30885920 | None:intergenic | 35.0% | |
| AGATGATCATCCCAAGAAAA+AGG | - | chr7.1:30886046-30886065 | None:intergenic | 35.0% | |
| AGATTATGTTGGGTCAAACA+AGG | + | chr7.1:30885478-30885497 | MS.gene87793:CDS | 35.0% | |
| ATGACATCTCCTTCTCTAAT+GGG | - | chr7.1:30885237-30885256 | None:intergenic | 35.0% | |
| CTTCAACAGAAACCTCATTA+AGG | + | chr7.1:30887073-30887092 | MS.gene87793:CDS | 35.0% | |
| GAATTGTACCAGTGATTGTA+GGG | + | chr7.1:30885433-30885452 | MS.gene87793:CDS | 35.0% | |
| GGTTTCTATTAGCAACATGA+AGG | + | chr7.1:30886325-30886344 | MS.gene87793:intron | 35.0% | |
| TAAGCATAAAAGTCAACCTG+AGG | + | chr7.1:30886419-30886438 | MS.gene87793:CDS | 35.0% | |
| TACATCATGAGGAATGTGAA+GGG | + | chr7.1:30885210-30885229 | MS.gene87793:CDS | 35.0% | |
| TATCAAATCTAGTATGGACG+AGG | + | chr7.1:30886362-30886381 | MS.gene87793:CDS | 35.0% | |
| TCTAGGAGTAAACCTTAATG+AGG | - | chr7.1:30887088-30887107 | None:intergenic | 35.0% | |
| TGAATTGTACCAGTGATTGT+AGG | + | chr7.1:30885432-30885451 | MS.gene87793:CDS | 35.0% | |
| ! | AAAAGGTTGAACTGATTCCT+CGG | - | chr7.1:30886029-30886048 | None:intergenic | 35.0% |
| ! | GAATTTGTTTGTGTTTGAGC+AGG | + | chr7.1:30885082-30885101 | MS.gene87793:intron | 35.0% |
| ! | GTGAAATTGTTCCTGTTTTG+TGG | + | chr7.1:30886840-30886859 | MS.gene87793:intron | 35.0% |
| ! | TGTTGGTTGTTGTTGTTGTT+TGG | + | chr7.1:30885008-30885027 | MS.gene87793:intron | 35.0% |
| !! | GCTCAAGTTGAGAAAGTTAT+GGG | + | chr7.1:30885126-30885145 | MS.gene87793:CDS | 35.0% |
| AATAAATCGCTATTGTGCCC+TGG | + | chr7.1:30884846-30884865 | MS.gene87793:intron | 40.0% | |
| ACACCAAATGCTAGTGGTTA+AGG | + | chr7.1:30886537-30886556 | MS.gene87793:intron | 40.0% | |
| ACGTTCCCAGGTATTAGAAA+CGG | - | chr7.1:30884614-30884633 | None:intergenic | 40.0% | |
| AGTGATTGTAGGGATTCAGA+AGG | + | chr7.1:30885443-30885462 | MS.gene87793:CDS | 40.0% | |
| ATCCCTTAACCACTAGCATT+TGG | - | chr7.1:30886543-30886562 | None:intergenic | 40.0% | |
| ATGAGAATCGCTACATCATG+AGG | + | chr7.1:30885199-30885218 | MS.gene87793:CDS | 40.0% | |
| ATGTTGTGGCTATGCTTGAT+TGG | + | chr7.1:30887260-30887279 | MS.gene87793:intron | 40.0% | |
| CACCAAATGCTAGTGGTTAA+GGG | + | chr7.1:30886538-30886557 | MS.gene87793:intron | 40.0% | |
| CAGGTATTAGAAACGGTGAT+GGG | - | chr7.1:30884607-30884626 | None:intergenic | 40.0% | |
| CATCACCGTTTCTAATACCT+GGG | + | chr7.1:30884606-30884625 | MS.gene87793:CDS | 40.0% | |
| CGAATCAGCTCTTATATCTC+TGG | + | chr7.1:30886089-30886108 | MS.gene87793:CDS | 40.0% | |
| CTACATCATGAGGAATGTGA+AGG | + | chr7.1:30885209-30885228 | MS.gene87793:CDS | 40.0% | |
| GATCTGAGAAGAATAAGCAC+AGG | + | chr7.1:30885735-30885754 | MS.gene87793:CDS | 40.0% | |
| TACACAACACCAAATGCTAG+TGG | + | chr7.1:30886531-30886550 | MS.gene87793:intron | 40.0% | |
| TGACATCTCCTTCTCTAATG+GGG | - | chr7.1:30885236-30885255 | None:intergenic | 40.0% | |
| TGTTGTGGCTATGCTTGATT+GGG | + | chr7.1:30887261-30887280 | MS.gene87793:intron | 40.0% | |
| TTCTCTCTCAGACTCAAGTA+GGG | - | chr7.1:30885262-30885281 | None:intergenic | 40.0% | |
| TTCTGAATCCCTACAATCAC+TGG | - | chr7.1:30885444-30885463 | None:intergenic | 40.0% | |
| TTGTTTGTGTTTGAGCAGGA+TGG | + | chr7.1:30885086-30885105 | MS.gene87793:intron | 40.0% | |
| ! | TGCTAGTGGTTAAGGGATTT+TGG | + | chr7.1:30886545-30886564 | MS.gene87793:intron | 40.0% |
| !! | CGCTCAAGTTGAGAAAGTTA+TGG | + | chr7.1:30885125-30885144 | MS.gene87793:CDS | 40.0% |
| !! | GATGCTCATCAAAGCATTGA+TGG | + | chr7.1:30885689-30885708 | MS.gene87793:CDS | 40.0% |
| !! | TTTGAATCAGGTGATAGTGG+AGG | - | chr7.1:30886498-30886517 | None:intergenic | 40.0% |
| AAAGAGGTCTCAAGCTGATC+TGG | + | chr7.1:30887469-30887488 | MS.gene87793:CDS | 45.0% | |
| AATTACCTTGACACGTTCCC+AGG | - | chr7.1:30884626-30884645 | None:intergenic | 45.0% | |
| ACTGTCCAAAATAGCGTACC+AGG | - | chr7.1:30884867-30884886 | None:intergenic | 45.0% | |
| ATCTAGTATGGACGAGGTGT+TGG | + | chr7.1:30886368-30886387 | MS.gene87793:CDS | 45.0% | |
| CCAGGTATTAGAAACGGTGA+TGG | - | chr7.1:30884608-30884627 | None:intergenic | 45.0% | |
| CCATCACCGTTTCTAATACC+TGG | + | chr7.1:30884605-30884624 | MS.gene87793:CDS | 45.0% | |
| CTGTCCAAAATAGCGTACCA+GGG | - | chr7.1:30884866-30884885 | None:intergenic | 45.0% | |
| CTTCTCTCTCAGACTCAAGT+AGG | - | chr7.1:30885263-30885282 | None:intergenic | 45.0% | |
| GACATAGGTGAACAAACCTG+TGG | - | chr7.1:30886132-30886151 | None:intergenic | 45.0% | |
| GAGAAAGTTATGGGTCGTAC+TGG | + | chr7.1:30885135-30885154 | MS.gene87793:CDS | 45.0% | |
| GTTATCTGGCTGCAACTTTG+TGG | - | chr7.1:30886637-30886656 | None:intergenic | 45.0% | |
| GTTGTGGCTATGCTTGATTG+GGG | + | chr7.1:30887262-30887281 | MS.gene87793:intron | 45.0% | |
| TAATACCTGGGAACGTGTCA+AGG | + | chr7.1:30884618-30884637 | MS.gene87793:CDS | 45.0% | |
| TCAATACTTTGGACACGTGC+TGG | - | chr7.1:30885834-30885853 | None:intergenic | 45.0% | |
| TGAGGTTTCTGTTGAAGCAG+AGG | - | chr7.1:30887070-30887089 | None:intergenic | 45.0% | |
| !! | CGAGGTGTTGGAGACTTTAA+AGG | + | chr7.1:30886380-30886399 | MS.gene87793:CDS | 45.0% |
| !! | GCACGTGTCCAAAGTATTGA+TGG | + | chr7.1:30885834-30885853 | MS.gene87793:CDS | 45.0% |
| !!! | TTTCTTATTTTTAATATAAA+AGG | + | chr7.1:30887446-30887465 | MS.gene87793:intron | 5.0% |
| AATCACCTCAGCTGCCTGAT+AGG | + | chr7.1:30885862-30885881 | MS.gene87793:CDS | 50.0% | |
| ATACTTTGGACACGTGCTGG+TGG | - | chr7.1:30885831-30885850 | None:intergenic | 50.0% | |
| ATCACCTCAGCTGCCTGATA+GGG | + | chr7.1:30885863-30885882 | MS.gene87793:CDS | 50.0% | |
| CTCACGCTACACCACAAAAC+AGG | - | chr7.1:30886854-30886873 | None:intergenic | 50.0% | |
| ! | TGTGCCCTGGTACGCTATTT+TGG | + | chr7.1:30884859-30884878 | MS.gene87793:intron | 50.0% |
| !! | GAATCAGGTGATAGTGGAGG+TGG | - | chr7.1:30886495-30886514 | None:intergenic | 50.0% |
| !! | GCACTGACTTCTTCCCTATC+AGG | - | chr7.1:30885879-30885898 | None:intergenic | 50.0% |
| AACCTGAGTGACCTGTCCTC+TGG | - | chr7.1:30885163-30885182 | None:intergenic | 55.0% | |
| ATCCAGAGGACAGGTCACTC+AGG | + | chr7.1:30885158-30885177 | MS.gene87793:CDS | 55.0% | |
| ATGGGTCGTACTGGATCCAG+AGG | + | chr7.1:30885144-30885163 | MS.gene87793:CDS | 55.0% | |
| GTGAAGGGCCCCATTAGAGA+AGG | + | chr7.1:30885225-30885244 | MS.gene87793:CDS | 55.0% | |
| TAGGGAAGAAGTCAGTGCCG+TGG | + | chr7.1:30885881-30885900 | MS.gene87793:CDS | 55.0% | |
| TCGTACTGGATCCAGAGGAC+AGG | + | chr7.1:30885149-30885168 | MS.gene87793:CDS | 55.0% | |
| TCTTCCCTATCAGGCAGCTG+AGG | - | chr7.1:30885870-30885889 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 30884599 | 30887494 | 30884599 | ID=MS.gene87793 |
| chr7.1 | mRNA | 30884599 | 30887494 | 30884599 | ID=MS.gene87793.t1;Parent=MS.gene87793 |
| chr7.1 | exon | 30884599 | 30884639 | 30884599 | ID=MS.gene87793.t1.exon1;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30884599 | 30884639 | 30884599 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| chr7.1 | exon | 30885104 | 30885281 | 30885104 | ID=MS.gene87793.t1.exon2;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30885104 | 30885281 | 30885104 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| chr7.1 | exon | 30885431 | 30885499 | 30885431 | ID=MS.gene87793.t1.exon3;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30885431 | 30885499 | 30885431 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| chr7.1 | exon | 30885687 | 30885902 | 30885687 | ID=MS.gene87793.t1.exon4;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30885687 | 30885902 | 30885687 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| chr7.1 | exon | 30885998 | 30886134 | 30885998 | ID=MS.gene87793.t1.exon5;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30885998 | 30886134 | 30885998 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| chr7.1 | exon | 30886347 | 30886440 | 30886347 | ID=MS.gene87793.t1.exon6;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30886347 | 30886440 | 30886347 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| chr7.1 | exon | 30887002 | 30887094 | 30887002 | ID=MS.gene87793.t1.exon7;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30887002 | 30887094 | 30887002 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| chr7.1 | exon | 30887468 | 30887494 | 30887468 | ID=MS.gene87793.t1.exon8;Parent=MS.gene87793.t1 |
| chr7.1 | CDS | 30887468 | 30887494 | 30887468 | ID=cds.MS.gene87793.t1;Parent=MS.gene87793.t1 |
| Gene Sequence |
| Protein sequence |
