Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87827.t1 | XP_024629174.1 | 95.4 | 1189 | 54 | 1 | 1 | 1188 | 1 | 1189 | 0.00E+00 | 2073.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87827.t1 | F4K1G2 | 55.3 | 1057 | 434 | 9 | 143 | 1181 | 2 | 1037 | 2.0e-270 | 933.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87827.t1 | G7LCR6 | 95.2 | 1189 | 56 | 1 | 1 | 1188 | 1 | 1189 | 0.0e+00 | 2072.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87827 | MS.gene065345 | PPI |
| MS.gene08876 | MS.gene87827 | PPI |
| MS.gene87827 | MS.gene025293 | PPI |
| MS.gene057442 | MS.gene87827 | PPI |
| MS.gene87827 | MS.gene08628 | PPI |
| MS.gene037122 | MS.gene87827 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87827.t1 | MTR_8g035620 | 95.122 | 1189 | 57 | 1 | 1 | 1188 | 1 | 1189 | 0.0 | 2305 |
| MS.gene87827.t1 | MTR_4g011790 | 22.954 | 501 | 328 | 15 | 146 | 618 | 118 | 588 | 6.06e-19 | 92.8 |
| MS.gene87827.t1 | MTR_4g011790 | 23.016 | 504 | 330 | 15 | 146 | 621 | 118 | 591 | 1.66e-18 | 91.3 |
| MS.gene87827.t1 | MTR_4g011790 | 22.612 | 513 | 330 | 16 | 146 | 621 | 118 | 600 | 2.63e-18 | 90.9 |
| MS.gene87827.t1 | MTR_2g105570 | 25.149 | 505 | 299 | 19 | 144 | 616 | 79 | 536 | 4.07e-18 | 90.1 |
| MS.gene87827.t1 | MTR_4g013210 | 21.713 | 502 | 302 | 16 | 146 | 621 | 113 | 549 | 1.28e-16 | 85.1 |
| MS.gene87827.t1 | MTR_4g128337 | 22.561 | 492 | 320 | 17 | 145 | 616 | 85 | 535 | 4.27e-15 | 80.5 |
| MS.gene87827.t1 | MTR_4g013210 | 22.083 | 480 | 312 | 15 | 146 | 593 | 113 | 562 | 1.01e-14 | 79.3 |
| MS.gene87827.t1 | MTR_4g013210 | 23.544 | 395 | 243 | 13 | 256 | 621 | 74 | 438 | 3.23e-14 | 77.0 |
| MS.gene87827.t1 | MTR_1g090737 | 22.692 | 520 | 346 | 11 | 117 | 622 | 82 | 559 | 7.77e-13 | 73.2 |
| MS.gene87827.t1 | MTR_4g013210 | 22.251 | 391 | 216 | 14 | 254 | 621 | 72 | 397 | 1.66e-11 | 68.2 |
| MS.gene87827.t1 | MTR_5g007640 | 24.048 | 499 | 311 | 22 | 142 | 616 | 120 | 574 | 3.85e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87827.t1 | AT5G35930 | 50.503 | 1192 | 498 | 13 | 8 | 1181 | 12 | 1129 | 0.0 | 1144 |
| MS.gene87827.t1 | AT5G35930 | 53.075 | 1057 | 457 | 9 | 143 | 1181 | 2 | 1037 | 0.0 | 1098 |
| MS.gene87827.t1 | AT5G35930 | 51.908 | 917 | 410 | 8 | 283 | 1181 | 1 | 904 | 0.0 | 937 |
| MS.gene87827.t1 | AT5G35930 | 51.908 | 917 | 410 | 8 | 283 | 1181 | 1 | 904 | 0.0 | 937 |
| MS.gene87827.t1 | AT3G16170 | 23.866 | 507 | 322 | 17 | 146 | 624 | 133 | 603 | 8.45e-20 | 95.5 |
| MS.gene87827.t1 | AT1G51680 | 23.507 | 519 | 320 | 18 | 145 | 637 | 92 | 559 | 6.66e-13 | 73.6 |
| MS.gene87827.t1 | AT3G48990 | 20.875 | 503 | 349 | 14 | 131 | 622 | 43 | 507 | 1.01e-11 | 69.3 |
| MS.gene87827.t1 | AT1G20510 | 22.798 | 386 | 243 | 10 | 256 | 625 | 194 | 540 | 2.24e-11 | 68.6 |
| MS.gene87827.t1 | AT1G30520 | 20.500 | 400 | 272 | 10 | 242 | 619 | 168 | 543 | 3.93e-11 | 67.8 |
| MS.gene87827.t1 | AT1G30520 | 20.500 | 400 | 272 | 10 | 242 | 619 | 168 | 543 | 3.93e-11 | 67.8 |
| MS.gene87827.t1 | AT3G21240 | 22.200 | 491 | 324 | 17 | 145 | 616 | 90 | 541 | 8.92e-11 | 66.6 |
Find 253 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACGATGATTTCTTTATTA+TGG | 0.141918 | 8.4:+61886030 | MS.gene87827:CDS |
| TGCACATGTTGCTCACAATT+TGG | 0.144000 | 8.4:+61886072 | MS.gene87827:CDS |
| TCAAATGTTGATCTCATTAT+AGG | 0.163314 | 8.4:+61881205 | MS.gene87827:CDS |
| CAAAACATCAACTTTATCTT+TGG | 0.189693 | 8.4:-61886287 | None:intergenic |
| GTAAAATTGCCTCAAAATTA+TGG | 0.197904 | 8.4:+61884519 | MS.gene87827:CDS |
| TCTTCTGCAACTTATTAAAA+AGG | 0.202078 | 8.4:+61885004 | MS.gene87827:CDS |
| TGGTGGTTCTTGCATATTTA+GGG | 0.217227 | 8.4:+61884458 | MS.gene87827:CDS |
| TCCCTTCTAAGCGCTTAAAA+AGG | 0.228455 | 8.4:+61886311 | MS.gene87827:CDS |
| TTGGTGGTTCTTGCATATTT+AGG | 0.240857 | 8.4:+61884457 | MS.gene87827:CDS |
| AACTGCAATGTAGTGCTTAT+TGG | 0.245488 | 8.4:+61884399 | MS.gene87827:CDS |
| ATATAAATTCCCACTATCTT+TGG | 0.249934 | 8.4:-61881067 | None:intergenic |
| TGTTATCTGATGTATACTTC+TGG | 0.251820 | 8.4:+61881400 | MS.gene87827:CDS |
| ACTACATTGCAGTTAGTAAT+TGG | 0.256218 | 8.4:-61884390 | None:intergenic |
| ATCCTTTCGTTTGGCCAAAA+AGG | 0.259106 | 8.4:-61881163 | None:intergenic |
| ACAACAACTGGGTGAGTTAT+TGG | 0.265149 | 8.4:+61884800 | MS.gene87827:CDS |
| TTCTCTTCGCCTTTGATGAT+TGG | 0.269906 | 8.4:+61892141 | MS.gene87827:CDS |
| GACGATGATTTCTTTATTAT+GGG | 0.271108 | 8.4:+61886031 | MS.gene87827:CDS |
| CAACGTTGTATTCCCATATT+AGG | 0.271890 | 8.4:-61891838 | None:intergenic |
| TGGGGAAGCCTTCTTGCCTT+TGG | 0.281399 | 8.4:+61881138 | MS.gene87827:CDS |
| AGGAAAAGGGAGACCTAATA+TGG | 0.289445 | 8.4:+61891825 | MS.gene87827:intron |
| GTGAAGTCTTGGTTGGAGTT+AGG | 0.289600 | 8.4:-61879726 | None:intergenic |
| AGAGCCATACAAAGCTTAAA+AGG | 0.296937 | 8.4:-61886130 | None:intergenic |
| GCACATGTTGCTCACAATTT+GGG | 0.301184 | 8.4:+61886073 | MS.gene87827:CDS |
| CATGTTGCTTTGGAATTTCA+AGG | 0.306316 | 8.4:-61892212 | None:intergenic |
| GATCGTGCTCTTTGCATAAT+AGG | 0.309303 | 8.4:+61886167 | MS.gene87827:CDS |
| TCATGTGGAGGCAGTATATA+CGG | 0.309480 | 8.4:+61889527 | MS.gene87827:CDS |
| ACATAAGCAGATGCAGTAAT+TGG | 0.315627 | 8.4:-61891866 | None:intergenic |
| ATTTGCGTTTGTTCTAGTTC+TGG | 0.322067 | 8.4:+61892015 | MS.gene87827:CDS |
| TGCAACAAGGTGTTGTATAA+AGG | 0.322942 | 8.4:+61886418 | MS.gene87827:CDS |
| ACAAATTCTCAACTTCTTCC+AGG | 0.326568 | 8.4:-61884680 | None:intergenic |
| TCAGATTTGTATTTATTCAT+TGG | 0.326978 | 8.4:+61886580 | MS.gene87827:CDS |
| TTATAACGAACCTTGAGATT+TGG | 0.328278 | 8.4:-61879904 | None:intergenic |
| GATATTTCACGATGCTTTGC+TGG | 0.330880 | 8.4:+61885991 | MS.gene87827:intron |
| TTAGTAATTGGTAAACCTAT+TGG | 0.335883 | 8.4:-61884378 | None:intergenic |
| AGTTCCCGTGTTTGGTTCTC+TGG | 0.337364 | 8.4:+61890653 | MS.gene87827:CDS |
| GAGGTCACATGAAGAGCTTT+TGG | 0.337985 | 8.4:+61886503 | MS.gene87827:CDS |
| AATGAAGATGATGACAATAT+TGG | 0.341854 | 8.4:-61886388 | None:intergenic |
| ATCATCCAACTTCTGATTGC+AGG | 0.344242 | 8.4:-61884825 | None:intergenic |
| ATGTAGTTCTTCAACAGATT+TGG | 0.344307 | 8.4:+61881342 | MS.gene87827:CDS |
| TGCAGGCTTATTCTGTTAAT+AGG | 0.351603 | 8.4:+61883146 | MS.gene87827:intron |
| AAAACATCAACTTTATCTTT+GGG | 0.352795 | 8.4:-61886286 | None:intergenic |
| ATCCCAACGGATCCATAGTT+TGG | 0.353140 | 8.4:+61890818 | MS.gene87827:CDS |
| ATTGAAGGACAAACAACAAC+TGG | 0.358221 | 8.4:+61884788 | MS.gene87827:CDS |
| ACTTCATACCTTCCAAACTA+TGG | 0.360142 | 8.4:-61890830 | None:intergenic |
| TTCTCTGCATACATGTTAGA+AGG | 0.367259 | 8.4:+61886620 | MS.gene87827:CDS |
| TTCTAAAGTATAATTCGCTT+TGG | 0.368841 | 8.4:-61884566 | None:intergenic |
| ATATCGATACCGCAGTTATA+CGG | 0.368924 | 8.4:-61889699 | None:intergenic |
| TGAAGTCTTGGTTGGAGTTA+GGG | 0.369997 | 8.4:-61879725 | None:intergenic |
| CGTCTAAACTCTATCCTTCA+TGG | 0.370150 | 8.4:+61879855 | MS.gene87827:CDS |
| CATTGGCTGACCAAGTTGTT+TGG | 0.370530 | 8.4:-61886465 | None:intergenic |
| AAGTTCAAGATTGATGTCTT+TGG | 0.375075 | 8.4:-61883316 | None:intergenic |
| ACATCAATCTTGAACTTATA+CGG | 0.377822 | 8.4:+61883322 | MS.gene87827:CDS |
| TTGCTTTATGTGGCCTCTAC+TGG | 0.378514 | 8.4:+61889673 | MS.gene87827:CDS |
| AAATGAACTTTCAGTATGAT+TGG | 0.379983 | 8.4:-61886242 | None:intergenic |
| CAAATGTTGATCTCATTATA+GGG | 0.383247 | 8.4:+61881206 | MS.gene87827:CDS |
| ATGTATACTTCTGGATCATC+TGG | 0.385691 | 8.4:+61881409 | MS.gene87827:CDS |
| ACAGCAGCATCATTTATATC+TGG | 0.385749 | 8.4:-61884714 | None:intergenic |
| ATGCACGGCCCAGCAAATAT+TGG | 0.386740 | 8.4:-61890947 | None:intergenic |
| ATGTGACCTCTGCTTCCTCT+TGG | 0.387104 | 8.4:-61886490 | None:intergenic |
| AGTAGCCACAGTATACTAAA+TGG | 0.387924 | 8.4:-61890621 | None:intergenic |
| CTTTGGCTTATACTCTTCAA+TGG | 0.391590 | 8.4:-61881050 | None:intergenic |
| AGAAGTTGAGAATTTGTTAA+GGG | 0.393739 | 8.4:+61884686 | MS.gene87827:CDS |
| AAATAGAGCTGAGAAATTCT+TGG | 0.400519 | 8.4:-61882915 | None:intergenic |
| TCTGAACAGTTCCCTCTTCA+CGG | 0.403668 | 8.4:-61880976 | None:intergenic |
| TGAAGCCTTTATAATATTGA+AGG | 0.403942 | 8.4:+61884773 | MS.gene87827:CDS |
| TAAGGTTAATTATGAGTTGT+TGG | 0.407349 | 8.4:+61884920 | MS.gene87827:CDS |
| AGTTAGGGGAAGTAGAGTTT+TGG | 0.407387 | 8.4:-61879710 | None:intergenic |
| GTATTTCTGTAGGTGGTTGT+TGG | 0.407551 | 8.4:+61887699 | MS.gene87827:intron |
| TTGCTAACAAGTGTTCCAAT+AGG | 0.408051 | 8.4:+61884363 | MS.gene87827:CDS |
| CGCCTTTGATGATTGGTGGC+CGG | 0.416074 | 8.4:+61892148 | MS.gene87827:CDS |
| GAATTAGAAGTTCCCGTGTT+TGG | 0.417682 | 8.4:+61890645 | MS.gene87827:CDS |
| CTTGAGATTTGGCCGTGATC+AGG | 0.417864 | 8.4:-61879893 | None:intergenic |
| TTTGTCCTTCAATATTATAA+AGG | 0.420000 | 8.4:-61884778 | None:intergenic |
| TCAGCGTGAGTTTGCAATAC+AGG | 0.420809 | 8.4:-61883205 | None:intergenic |
| TTCTCTCAGTATTGAGGTGT+GGG | 0.422096 | 8.4:+61881119 | MS.gene87827:CDS |
| ACTGACAGTATCCTTTCGTT+TGG | 0.422407 | 8.4:-61881172 | None:intergenic |
| TTTGTAATCGAGAGCGTATA+AGG | 0.422883 | 8.4:-61889480 | None:intergenic |
| ATCGCCGTCATCTACGCTTC+CGG | 0.428777 | 8.4:+61879669 | MS.gene87827:CDS |
| ACTGGTGGTCCAATATTTGC+TGG | 0.430984 | 8.4:+61890938 | MS.gene87827:CDS |
| GGTTCTAACAATGTTACGTT+AGG | 0.431821 | 8.4:+61886334 | MS.gene87827:CDS |
| TTCATTTAGTAAAAGTAACT+TGG | 0.433523 | 8.4:+61881237 | MS.gene87827:CDS |
| AGCGAATTATACTTTAGAAC+TGG | 0.434992 | 8.4:+61884570 | MS.gene87827:CDS |
| AAGAAGTTGAGAATTTGTTA+AGG | 0.435328 | 8.4:+61884685 | MS.gene87827:CDS |
| GCAACAAGGTGTTGTATAAA+GGG | 0.443268 | 8.4:+61886419 | MS.gene87827:CDS |
| CCCTACAACCAACGAAAATC+CGG | 0.446019 | 8.4:-61892167 | None:intergenic |
| TTATTCTGTTAATAGGCTTA+CGG | 0.446273 | 8.4:+61883153 | MS.gene87827:CDS |
| TCTGCTTCCTCTTGGAACAT+TGG | 0.446930 | 8.4:-61886482 | None:intergenic |
| GTTTGCAAGACTTAAGTTGC+CGG | 0.449434 | 8.4:+61892110 | MS.gene87827:CDS |
| TCCCGTGTCTTCTAGTGGTA+AGG | 0.451450 | 8.4:+61884902 | MS.gene87827:CDS |
| GTAATATGTTGCTTGGTAGA+TGG | 0.451515 | 8.4:+61890778 | MS.gene87827:intron |
| TCAATGGAGTATCTCAAAAC+AGG | 0.455889 | 8.4:-61881304 | None:intergenic |
| GACTAAGAGTGTCAAGGATA+AGG | 0.456371 | 8.4:+61884959 | MS.gene87827:CDS |
| GTGCTTGTATGCTGCAGAAA+TGG | 0.463373 | 8.4:+61891251 | MS.gene87827:CDS |
| TAAAGGGCAAACTTCTGTAA+TGG | 0.469032 | 8.4:+61886435 | MS.gene87827:CDS |
| AGAGTATAAGCCAAAGATAG+TGG | 0.470385 | 8.4:+61881057 | MS.gene87827:CDS |
| TCTGTAAAGATGAAACGGTT+GGG | 0.471349 | 8.4:-61884873 | None:intergenic |
| TCTTCGCCTTTGATGATTGG+TGG | 0.471373 | 8.4:+61892144 | MS.gene87827:CDS |
| TAATGTTTCATGTAGGTTCG+TGG | 0.472657 | 8.4:+61889649 | MS.gene87827:intron |
| AATTCTTCCTTTAAAACCAA+TGG | 0.473960 | 8.4:-61884342 | None:intergenic |
| TTGGGTTTGCGGTGGCTGTT+CGG | 0.474210 | 8.4:-61879641 | None:intergenic |
| GGTTCGTGGCTTGCTTTATG+TGG | 0.481622 | 8.4:+61889663 | MS.gene87827:intron |
| TGTCTGCATGTGTCTACAAC+TGG | 0.481950 | 8.4:-61888310 | None:intergenic |
| TCAGTGCCACACACTCCTTT+AGG | 0.482344 | 8.4:-61881436 | None:intergenic |
| GGGGAGATGAACCGTTTCCT+TGG | 0.483990 | 8.4:+61886356 | MS.gene87827:CDS |
| CTGAAATTGCTTGTGCTAAG+TGG | 0.484593 | 8.4:+61883247 | MS.gene87827:CDS |
| GACCGTATTGTAAAAGTCCA+TGG | 0.487416 | 8.4:+61884645 | MS.gene87827:CDS |
| ATACAAAGCTTAAAAGGAGT+TGG | 0.488182 | 8.4:-61886124 | None:intergenic |
| CGGCTGTTCCATCACTAATA+CGG | 0.492230 | 8.4:+61883173 | MS.gene87827:CDS |
| GTGGTTGTTGGATGTTACAT+TGG | 0.492700 | 8.4:+61887711 | MS.gene87827:CDS |
| CTTCCAAACTATGGATCCGT+TGG | 0.496439 | 8.4:-61890821 | None:intergenic |
| AATGTATCCTTTGACGGGGC+AGG | 0.496532 | 8.4:+61882849 | MS.gene87827:CDS |
| TTGGATCAACACCAGGAAAA+GGG | 0.497594 | 8.4:+61891812 | MS.gene87827:intron |
| CAAGGAATGTATCCTTTGAC+GGG | 0.497665 | 8.4:+61882844 | MS.gene87827:CDS |
| CAAATTCTCAACTTCTTCCA+GGG | 0.501763 | 8.4:-61884679 | None:intergenic |
| ATGATTCTGTAAAGATGAAA+CGG | 0.503789 | 8.4:-61884878 | None:intergenic |
| AAATTCACCTCATCAATTGC+AGG | 0.504489 | 8.4:-61889554 | None:intergenic |
| GTTCTAACAATGTTACGTTA+GGG | 0.506732 | 8.4:+61886335 | MS.gene87827:CDS |
| GTGCTCTTTGCATAATAGGT+TGG | 0.507192 | 8.4:+61886171 | MS.gene87827:CDS |
| TTTGGAATGGACACATCTGT+TGG | 0.508610 | 8.4:+61887754 | MS.gene87827:CDS |
| TTCTGTAAAGATGAAACGGT+TGG | 0.512342 | 8.4:-61884874 | None:intergenic |
| GCAAGGAATGTATCCTTTGA+CGG | 0.512914 | 8.4:+61882843 | MS.gene87827:CDS |
| GTTTAGTGGTTCTATGCAGT+GGG | 0.519242 | 8.4:+61887213 | MS.gene87827:intron |
| GCTTGATGAATCACATTGGC+TGG | 0.520550 | 8.4:+61881264 | MS.gene87827:CDS |
| CACATGTTGCTCACAATTTG+GGG | 0.523615 | 8.4:+61886074 | MS.gene87827:CDS |
| GGTCACCGTGGTAGAACGGC+GGG | 0.524528 | 8.4:-61879782 | None:intergenic |
| GTACATACTTTGATTGCAAG+AGG | 0.526605 | 8.4:+61884316 | MS.gene87827:CDS |
| TCGCCGTTCTCTCAGTATTG+AGG | 0.527046 | 8.4:+61881113 | MS.gene87827:CDS |
| GCCAATGTGATTCATCAAGC+TGG | 0.528105 | 8.4:-61881261 | None:intergenic |
| TTTGCAAGACTTAAGTTGCC+GGG | 0.531650 | 8.4:+61892111 | MS.gene87827:CDS |
| AGCTGAGAAATTCTTGGAGG+TGG | 0.531962 | 8.4:-61882909 | None:intergenic |
| TTCCAAACTATGGATCCGTT+GGG | 0.532594 | 8.4:-61890820 | None:intergenic |
| CAGTGGGAGATCAAACTAGA+AGG | 0.532734 | 8.4:+61887229 | MS.gene87827:CDS |
| GGATCATCTGGAAAGCCTAA+AGG | 0.534315 | 8.4:+61881421 | MS.gene87827:CDS |
| GGAAGGGAATGCCAAGGAAA+CGG | 0.535679 | 8.4:-61886367 | None:intergenic |
| CCATGGGCAACGTATTGCCC+TGG | 0.537977 | 8.4:+61884662 | MS.gene87827:CDS |
| TGGTTGTTGGATGTTACATT+GGG | 0.538352 | 8.4:+61887712 | MS.gene87827:CDS |
| ACACATGCAGACAATTGATC+TGG | 0.539094 | 8.4:+61888320 | MS.gene87827:CDS |
| ACGAGAGCTTAGAGAACAAA+CGG | 0.543887 | 8.4:-61879835 | None:intergenic |
| GGTTTAGTGGTTCTATGCAG+TGG | 0.546050 | 8.4:+61887212 | MS.gene87827:intron |
| AGATGGAGATGTTCTTGCAT+TGG | 0.547170 | 8.4:+61890795 | MS.gene87827:CDS |
| GCGGGAAAGATTGGCGACGC+CGG | 0.548445 | 8.4:-61879688 | None:intergenic |
| TGCGTTTGTTCTAGTTCTGG+AGG | 0.552984 | 8.4:+61892018 | MS.gene87827:CDS |
| TGGTACCTGCAATCAGAAGT+TGG | 0.554293 | 8.4:+61884820 | MS.gene87827:CDS |
| GATGAGAGTAAGTGAAAGAA+CGG | 0.555423 | 8.4:-61879803 | None:intergenic |
| GTTCTTCAACAGATTTGGCA+TGG | 0.556731 | 8.4:+61881347 | MS.gene87827:CDS |
| AATAGCTCCTGCCCCGTCAA+AGG | 0.557321 | 8.4:-61882856 | None:intergenic |
| AGCGTCTCCCACAAGGTGAA+AGG | 0.558893 | 8.4:-61883280 | None:intergenic |
| ATGTTGCTTTGGAATTTCAA+GGG | 0.559770 | 8.4:-61892211 | None:intergenic |
| AAGATGATGACAATATTGGA+AGG | 0.559883 | 8.4:-61886384 | None:intergenic |
| TTGTGTTGATGCTTCACCCA+TGG | 0.560130 | 8.4:+61886543 | MS.gene87827:CDS |
| TGGATACATACCAAACAACT+TGG | 0.561038 | 8.4:+61886455 | MS.gene87827:CDS |
| GAAGTCTTGGTTGGAGTTAG+GGG | 0.561063 | 8.4:-61879724 | None:intergenic |
| TTCATTTAGCCGCTGCAACA+AGG | 0.562852 | 8.4:+61886405 | MS.gene87827:CDS |
| GAGCGTGGTGAAGTCTTGGT+TGG | 0.563403 | 8.4:-61879733 | None:intergenic |
| GGAGTGTGTGGCACTGAACA+AGG | 0.565087 | 8.4:+61881442 | MS.gene87827:CDS |
| GATGGTGTCCACCGTGAAGA+GGG | 0.565520 | 8.4:+61880965 | MS.gene87827:CDS |
| TGATTGCAAGAGGATACCAT+TGG | 0.565883 | 8.4:+61884326 | MS.gene87827:CDS |
| CTGTAAAGATGAAACGGTTG+GGG | 0.566117 | 8.4:-61884872 | None:intergenic |
| AAGTGTGTACTCATTCAAAC+TGG | 0.566453 | 8.4:+61891274 | MS.gene87827:CDS |
| GATTTGGCCGTGATCAGGTG+CGG | 0.566796 | 8.4:-61879888 | None:intergenic |
| AGAATTGTCCGTATTAGTGA+TGG | 0.567722 | 8.4:-61883181 | None:intergenic |
| GTTCATTTCCTCTCGAGTCA+AGG | 0.568276 | 8.4:+61886257 | MS.gene87827:CDS |
| AAAAGGATCCAAAGGCAAGA+AGG | 0.568328 | 8.4:-61881146 | None:intergenic |
| GATGATTTCTTTATTATGGG+TGG | 0.568908 | 8.4:+61886034 | MS.gene87827:CDS |
| ATGCCTCTCACACTTCAGAC+AGG | 0.569394 | 8.4:+61891915 | MS.gene87827:CDS |
| TCGTGTGAAATGCAGCAATA+CGG | 0.569742 | 8.4:-61879612 | None:intergenic |
| TCATGACCCGCACCTGATCA+CGG | 0.569870 | 8.4:+61879881 | MS.gene87827:CDS |
| GAACGGTCACCGTGGTAGAA+CGG | 0.570410 | 8.4:-61879786 | None:intergenic |
| ATCAAAGTATGTACAATCGC+CGG | 0.570437 | 8.4:-61884307 | None:intergenic |
| GTAGTGCTTATTGGTGAAAA+CGG | 0.570737 | 8.4:+61884408 | MS.gene87827:CDS |
| CAACGGATCCATAGTTTGGA+AGG | 0.570864 | 8.4:+61890822 | MS.gene87827:CDS |
| GTTCTCTCAGTATTGAGGTG+TGG | 0.571413 | 8.4:+61881118 | MS.gene87827:CDS |
| TAGAGCTGAGAAATTCTTGG+AGG | 0.571658 | 8.4:-61882912 | None:intergenic |
| ATTTGGCCGTGATCAGGTGC+GGG | 0.573274 | 8.4:-61879887 | None:intergenic |
| CTGGTGGTCCAATATTTGCT+GGG | 0.574719 | 8.4:+61890939 | MS.gene87827:CDS |
| CTGATCACGGCCAAATCTCA+AGG | 0.576165 | 8.4:+61879894 | MS.gene87827:CDS |
| GGAAAAGGGAGACCTAATAT+GGG | 0.576972 | 8.4:+61891826 | MS.gene87827:intron |
| CGATGGTGTCCACCGTGAAG+AGG | 0.577409 | 8.4:+61880964 | MS.gene87827:CDS |
| GTAAGAGCGTGGTGAAGTCT+TGG | 0.578493 | 8.4:-61879737 | None:intergenic |
| CTTTATGTGGCCTCTACTGG+TGG | 0.579345 | 8.4:+61889676 | MS.gene87827:CDS |
| GGTGGTTCTTGCATATTTAG+GGG | 0.580256 | 8.4:+61884459 | MS.gene87827:CDS |
| AAGAGTGTCAAGGATAAGGT+TGG | 0.581057 | 8.4:+61884963 | MS.gene87827:CDS |
| GCGATAATATATTCAACAGA+AGG | 0.582297 | 8.4:-61881094 | None:intergenic |
| ATGGCTCTTCTCCATAAAAG+AGG | 0.582942 | 8.4:+61886145 | MS.gene87827:CDS |
| TCTTTGAGCTCGCTGAAAGG+AGG | 0.589038 | 8.4:-61882961 | None:intergenic |
| TCATTTCCCGTGTCTTCTAG+TGG | 0.590784 | 8.4:+61884897 | MS.gene87827:CDS |
| TTGTGCAGTAATATGTTGCT+TGG | 0.591644 | 8.4:+61890771 | MS.gene87827:intron |
| AGTTATACGGCCACCAGTAG+AGG | 0.592133 | 8.4:-61889686 | None:intergenic |
| GGAATCATCCTTGACTCGAG+AGG | 0.592302 | 8.4:-61886265 | None:intergenic |
| TGAAAACGGTGCACTAAATG+AGG | 0.593371 | 8.4:+61884422 | MS.gene87827:CDS |
| ATCCGGCCACCAATCATCAA+AGG | 0.593741 | 8.4:-61892150 | None:intergenic |
| TCTAACAATGTTACGTTAGG+GGG | 0.597799 | 8.4:+61886337 | MS.gene87827:CDS |
| ACCTCCCCGCCGTTCTACCA+CGG | 0.598693 | 8.4:+61879777 | MS.gene87827:CDS |
| ATACGGTGATTCTGAAGTCA+TGG | 0.599448 | 8.4:-61879595 | None:intergenic |
| GAGTATAAGCCAAAGATAGT+GGG | 0.601040 | 8.4:+61881058 | MS.gene87827:CDS |
| AACCTTACCACTAGAAGACA+CGG | 0.602059 | 8.4:-61884904 | None:intergenic |
| ACCGTATTGTAAAAGTCCAT+GGG | 0.602878 | 8.4:+61884646 | MS.gene87827:CDS |
| CATGTGGAGGCAGTATATAC+GGG | 0.604056 | 8.4:+61889528 | MS.gene87827:CDS |
| AATGTTCCAAGAGGAAGCAG+AGG | 0.604714 | 8.4:+61886484 | MS.gene87827:CDS |
| TTTGTTCAGAAAACAACTGG+TGG | 0.604920 | 8.4:+61890923 | MS.gene87827:intron |
| TAACCTGTCTGAAGTGTGAG+AGG | 0.608810 | 8.4:-61891918 | None:intergenic |
| CCAGGGCAATACGTTGCCCA+TGG | 0.610138 | 8.4:-61884662 | None:intergenic |
| ACACCTCAATACTGAGAGAA+CGG | 0.611740 | 8.4:-61881116 | None:intergenic |
| GGCGAAGAGAAAATATCCCC+CGG | 0.613716 | 8.4:-61892129 | None:intergenic |
| GACAGCCAGAGAACCAAACA+CGG | 0.614344 | 8.4:-61890658 | None:intergenic |
| TTCTAACAATGTTACGTTAG+GGG | 0.615582 | 8.4:+61886336 | MS.gene87827:CDS |
| ATAATATATTCAACAGAAGG+AGG | 0.617818 | 8.4:-61881091 | None:intergenic |
| AGATGATGACAATATTGGAA+GGG | 0.621321 | 8.4:-61886383 | None:intergenic |
| GGGAGATCAAACTAGAAGGT+CGG | 0.621823 | 8.4:+61887233 | MS.gene87827:CDS |
| GCGGGTCATGAGAACCATGA+AGG | 0.623184 | 8.4:-61879869 | None:intergenic |
| AGAGAATAATGTACCTCATG+AGG | 0.626171 | 8.4:-61890983 | None:intergenic |
| GAATCTGATATAATGTCCGA+AGG | 0.627899 | 8.4:+61884492 | MS.gene87827:CDS |
| TATTCTACTGTAGGTAACGA+TGG | 0.629199 | 8.4:+61880947 | MS.gene87827:intron |
| AGTTGAAAGCGTCTCCCACA+AGG | 0.630165 | 8.4:-61883287 | None:intergenic |
| ATTATTGACTAAGAGTGTCA+AGG | 0.632202 | 8.4:+61884953 | MS.gene87827:CDS |
| GTCTATAAGCTATCATGTGG+AGG | 0.632709 | 8.4:+61889515 | MS.gene87827:CDS |
| CGGGTCACCTGCAATTGATG+AGG | 0.635477 | 8.4:+61889547 | MS.gene87827:CDS |
| CTAATATGGGAATACAACGT+TGG | 0.637142 | 8.4:+61891839 | MS.gene87827:CDS |
| TTGCAAGACTTAAGTTGCCG+GGG | 0.638621 | 8.4:+61892112 | MS.gene87827:CDS |
| GACGCCGGAAGCGTAGATGA+CGG | 0.640091 | 8.4:-61879673 | None:intergenic |
| GTTCTTGCATTGGATCCCAA+CGG | 0.640693 | 8.4:+61890805 | MS.gene87827:CDS |
| ACCTTCTGTTAGTCCTCATG+AGG | 0.642499 | 8.4:+61890970 | MS.gene87827:CDS |
| GGAAAGCCTAAAGGAGTGTG+TGG | 0.643239 | 8.4:+61881430 | MS.gene87827:CDS |
| TATACAACACCTTGTTGCAG+CGG | 0.644162 | 8.4:-61886414 | None:intergenic |
| TACTGGTGGCCGTATAACTG+CGG | 0.645332 | 8.4:+61889690 | MS.gene87827:CDS |
| GAGGGTGAGCTATATGTTGG+TGG | 0.646643 | 8.4:+61884441 | MS.gene87827:CDS |
| TGCAAGACTTAAGTTGCCGG+GGG | 0.657823 | 8.4:+61892113 | MS.gene87827:CDS |
| CGGTTGGGGAGTAAAACTGA+TGG | 0.660612 | 8.4:-61884858 | None:intergenic |
| TTGAAGGACAAACAACAACT+GGG | 0.662725 | 8.4:+61884789 | MS.gene87827:CDS |
| TTAGTCAAACAGTTGCCAAG+TGG | 0.664188 | 8.4:+61884597 | MS.gene87827:CDS |
| AATGAGGGTGAGCTATATGT+TGG | 0.664431 | 8.4:+61884438 | MS.gene87827:CDS |
| ACCTCATGAGGACTAACAGA+AGG | 0.664502 | 8.4:-61890971 | None:intergenic |
| GAGTCTTTAGACACAACCAT+GGG | 0.666464 | 8.4:-61886559 | None:intergenic |
| AATATTGGAAGGGAATGCCA+AGG | 0.667029 | 8.4:-61886373 | None:intergenic |
| AACGCGCTGTAGTAAGAGCG+TGG | 0.669030 | 8.4:-61879748 | None:intergenic |
| GGACTAACAGAAGGTATGCA+CGG | 0.676125 | 8.4:-61890962 | None:intergenic |
| GTTCGCCATTTAGTATACTG+TGG | 0.677406 | 8.4:+61890616 | MS.gene87827:CDS |
| ACCAGCTTGATGAATCACAT+TGG | 0.680439 | 8.4:+61881260 | MS.gene87827:CDS |
| ACCGTGGTAGAACGGCGGGG+AGG | 0.687530 | 8.4:-61879778 | None:intergenic |
| TCTCTCAGTATTGAGGTGTG+GGG | 0.689216 | 8.4:+61881120 | MS.gene87827:CDS |
| ACCTTACCACTAGAAGACAC+GGG | 0.691861 | 8.4:-61884903 | None:intergenic |
| ACAGCCAGAGAACCAAACAC+GGG | 0.692734 | 8.4:-61890657 | None:intergenic |
| TGGTCAGCCAATGTTCCAAG+AGG | 0.693641 | 8.4:+61886475 | MS.gene87827:CDS |
| TGAGTCTTTAGACACAACCA+TGG | 0.694311 | 8.4:-61886560 | None:intergenic |
| AAGAACATAAAATCACCACT+TGG | 0.695149 | 8.4:-61884612 | None:intergenic |
| TGTGTCTATAAGCTATCATG+TGG | 0.697084 | 8.4:+61889512 | MS.gene87827:CDS |
| CGGTCACCGTGGTAGAACGG+CGG | 0.697355 | 8.4:-61879783 | None:intergenic |
| GAACAGTTCCCTCTTCACGG+TGG | 0.704716 | 8.4:-61880973 | None:intergenic |
| GTCACCGTGGTAGAACGGCG+GGG | 0.709304 | 8.4:-61879781 | None:intergenic |
| GAACTTATACGGAAGTACCG+AGG | 0.710928 | 8.4:+61883333 | MS.gene87827:CDS |
| AAGGAATGTATCCTTTGACG+GGG | 0.723446 | 8.4:+61882845 | MS.gene87827:CDS |
| AAGTGAAAGAACGGTCACCG+TGG | 0.752740 | 8.4:-61879794 | None:intergenic |
| GAAAACGGTGCACTAAATGA+GGG | 0.753797 | 8.4:+61884423 | MS.gene87827:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 61879597 | 61892242 | 61879597 | ID=MS.gene87827 |
| chr8.4 | mRNA | 61879597 | 61892242 | 61879597 | ID=MS.gene87827.t1;Parent=MS.gene87827 |
| chr8.4 | exon | 61879597 | 61879915 | 61879597 | ID=MS.gene87827.t1.exon1;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61879597 | 61879915 | 61879597 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61880960 | 61881463 | 61880960 | ID=MS.gene87827.t1.exon2;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61880960 | 61881463 | 61880960 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61882818 | 61883014 | 61882818 | ID=MS.gene87827.t1.exon3;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61882818 | 61883014 | 61882818 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61883151 | 61883354 | 61883151 | ID=MS.gene87827.t1.exon4;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61883151 | 61883354 | 61883151 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61884303 | 61885025 | 61884303 | ID=MS.gene87827.t1.exon5;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61884303 | 61885025 | 61884303 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61885992 | 61886641 | 61885992 | ID=MS.gene87827.t1.exon6;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61885992 | 61886641 | 61885992 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61887219 | 61887294 | 61887219 | ID=MS.gene87827.t1.exon7;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61887219 | 61887294 | 61887219 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61887711 | 61887797 | 61887711 | ID=MS.gene87827.t1.exon8;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61887711 | 61887797 | 61887711 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61888298 | 61888341 | 61888298 | ID=MS.gene87827.t1.exon9;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61888298 | 61888341 | 61888298 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61889460 | 61889568 | 61889460 | ID=MS.gene87827.t1.exon10;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61889460 | 61889568 | 61889460 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61889664 | 61889723 | 61889664 | ID=MS.gene87827.t1.exon11;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61889664 | 61889723 | 61889664 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61890615 | 61890696 | 61890615 | ID=MS.gene87827.t1.exon12;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61890615 | 61890696 | 61890615 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61890779 | 61890843 | 61890779 | ID=MS.gene87827.t1.exon13;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61890779 | 61890843 | 61890779 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61890932 | 61890991 | 61890932 | ID=MS.gene87827.t1.exon14;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61890932 | 61890991 | 61890932 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61891251 | 61891295 | 61891251 | ID=MS.gene87827.t1.exon15;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61891251 | 61891295 | 61891251 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61891827 | 61891936 | 61891827 | ID=MS.gene87827.t1.exon16;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61891827 | 61891936 | 61891827 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| chr8.4 | exon | 61892011 | 61892242 | 61892011 | ID=MS.gene87827.t1.exon17;Parent=MS.gene87827.t1 |
| chr8.4 | CDS | 61892011 | 61892242 | 61892011 | ID=cds.MS.gene87827.t1;Parent=MS.gene87827.t1 |
| Gene Sequence |
| Protein sequence |
