Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88053.t1 | XP_003622165.1 | 99.1 | 220 | 2 | 0 | 1 | 220 | 7 | 226 | 8.10E-119 | 436.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88053.t1 | Q8LEF6 | 65.2 | 221 | 74 | 1 | 3 | 220 | 4 | 224 | 6.8e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88053.t1 | G7L383 | 99.1 | 220 | 2 | 0 | 1 | 220 | 7 | 226 | 5.9e-119 | 436.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053009 | MS.gene88053 | 0.817023 | 4.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88053.t1 | MTR_7g028600 | 99.091 | 220 | 2 | 0 | 1 | 220 | 7 | 226 | 3.31e-159 | 442 |
| MS.gene88053.t1 | MTR_7g079540 | 34.225 | 187 | 96 | 8 | 47 | 220 | 86 | 258 | 2.33e-17 | 79.3 |
| MS.gene88053.t1 | MTR_7g079540 | 34.225 | 187 | 96 | 8 | 47 | 220 | 86 | 258 | 4.36e-17 | 79.3 |
| MS.gene88053.t1 | MTR_1567s0010 | 36.196 | 163 | 87 | 6 | 67 | 225 | 244 | 393 | 6.93e-16 | 76.3 |
| MS.gene88053.t1 | MTR_3g096300 | 27.670 | 206 | 116 | 7 | 12 | 215 | 12 | 186 | 3.08e-15 | 73.2 |
| MS.gene88053.t1 | MTR_8g442660 | 27.670 | 206 | 116 | 7 | 12 | 215 | 12 | 186 | 3.08e-15 | 73.2 |
| MS.gene88053.t1 | MTR_7g033710 | 29.947 | 187 | 114 | 8 | 51 | 229 | 429 | 606 | 2.94e-13 | 68.9 |
| MS.gene88053.t1 | MTR_5g033080 | 31.148 | 183 | 109 | 8 | 47 | 223 | 456 | 627 | 1.84e-11 | 63.5 |
| MS.gene88053.t1 | MTR_6g078080 | 26.064 | 188 | 123 | 6 | 47 | 228 | 365 | 542 | 2.16e-11 | 63.5 |
| MS.gene88053.t1 | MTR_5g033080 | 31.148 | 183 | 109 | 8 | 47 | 223 | 281 | 452 | 3.03e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88053.t1 | AT5G14100 | 65.315 | 222 | 74 | 1 | 2 | 220 | 3 | 224 | 7.98e-96 | 281 |
| MS.gene88053.t1 | AT4G33460 | 30.058 | 173 | 98 | 5 | 46 | 215 | 39 | 191 | 2.54e-15 | 73.6 |
| MS.gene88053.t1 | AT1G65410 | 31.905 | 210 | 124 | 9 | 19 | 220 | 59 | 257 | 5.24e-15 | 73.2 |
| MS.gene88053.t1 | AT4G18050 | 24.413 | 213 | 147 | 6 | 21 | 228 | 339 | 542 | 1.70e-11 | 63.9 |
| MS.gene88053.t1 | AT4G18050 | 24.413 | 213 | 147 | 6 | 21 | 228 | 329 | 532 | 1.78e-11 | 63.9 |
| MS.gene88053.t1 | AT1G70610 | 30.055 | 183 | 111 | 7 | 47 | 223 | 455 | 626 | 7.92e-11 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCCCGATTTATTAATAT+TGG | 0.208491 | 7.1:+69113600 | MS.gene88053:CDS |
| AAAAGGGTAATGATCAATTA+AGG | 0.239803 | 7.1:+69112813 | MS.gene88053:CDS |
| AAGACAATACCGACCCTTTC+CGG | 0.262908 | 7.1:-69112112 | None:intergenic |
| GTACTTGATGAAGTCACTTT+TGG | 0.293522 | 7.1:+69112779 | MS.gene88053:CDS |
| GGCTCCAGAGGGCTATTAAC+TGG | 0.307088 | 7.1:+69112852 | MS.gene88053:CDS |
| TTCATCCAATATTAATAAAT+CGG | 0.315685 | 7.1:-69113605 | None:intergenic |
| CTTTCCGGCACCAAGGGTTC+AGG | 0.366096 | 7.1:-69112097 | None:intergenic |
| ATTCATACCTCTCTGGAAAC+TGG | 0.375900 | 7.1:-69112135 | None:intergenic |
| TCATCCAATATTAATAAATC+GGG | 0.397287 | 7.1:-69113604 | None:intergenic |
| ATATTGGATGAACCTCTTGC+CGG | 0.404514 | 7.1:+69113616 | MS.gene88053:CDS |
| TTGCAGTTGTTTACCAAGTC+CGG | 0.405056 | 7.1:-69113635 | None:intergenic |
| TGGATTAAGTGGGATATCAT+TGG | 0.410784 | 7.1:+69113353 | MS.gene88053:CDS |
| GTAACTGCAGCGAGTGGTTG+AGG | 0.413989 | 7.1:-69109749 | None:intergenic |
| TGAACCCTTGGTGCCGGAAA+GGG | 0.415629 | 7.1:+69112099 | MS.gene88053:CDS |
| TAACTATAGGTTGGATTAAG+TGG | 0.420478 | 7.1:+69113342 | MS.gene88053:intron |
| GGAATAAACAAACCAACATC+TGG | 0.434832 | 7.1:+69112025 | MS.gene88053:CDS |
| AGTTTATATTCATACCTCTC+TGG | 0.442467 | 7.1:-69112142 | None:intergenic |
| GATGAACCTCTTGCCGGACT+TGG | 0.447628 | 7.1:+69113622 | MS.gene88053:CDS |
| CTGAACCCTTGGTGCCGGAA+AGG | 0.467485 | 7.1:+69112098 | MS.gene88053:CDS |
| ATCTCCTGAACCCTTGGTGC+CGG | 0.470612 | 7.1:+69112093 | MS.gene88053:CDS |
| AAGAAGAAAGTGGTGGTTTG+AGG | 0.474000 | 7.1:-69109678 | None:intergenic |
| AAAGGGTAATGATCAATTAA+GGG | 0.477968 | 7.1:+69112814 | MS.gene88053:CDS |
| TTACAAACGTCGCCTTGCCT+TGG | 0.493843 | 7.1:+69113404 | MS.gene88053:CDS |
| TTAAGGGAGAATCTTGCTCT+AGG | 0.508166 | 7.1:+69112830 | MS.gene88053:CDS |
| TTGAGGAAGTGAAAGGTGAT+TGG | 0.513947 | 7.1:-69109661 | None:intergenic |
| ACTTACTAATTGTATTGCCA+AGG | 0.520140 | 7.1:-69113421 | None:intergenic |
| GGTGATTGGTGAATTAATAG+AGG | 0.520147 | 7.1:-69109647 | None:intergenic |
| AAGTCAATCTCCTGAACCCT+TGG | 0.527840 | 7.1:+69112087 | MS.gene88053:CDS |
| TTGAGGAGAGCGAGAAAGTG+AGG | 0.528542 | 7.1:-69109704 | None:intergenic |
| AGTGAGGGAAAAGAAGAAAG+TGG | 0.547184 | 7.1:-69109688 | None:intergenic |
| CTACCCAGTTAATAGCCCTC+TGG | 0.547700 | 7.1:-69112856 | None:intergenic |
| TAACCGCCACTGAGAGAATG+AGG | 0.551057 | 7.1:-69113384 | None:intergenic |
| TTTGGGTGGCCAAGACAAAA+GGG | 0.552958 | 7.1:+69112797 | MS.gene88053:CDS |
| CCGACCCTTTCCGGCACCAA+GGG | 0.562973 | 7.1:-69112103 | None:intergenic |
| AACTATAGGTTGGATTAAGT+GGG | 0.566656 | 7.1:+69113343 | MS.gene88053:intron |
| ATCTTGCTCTAGGGCTCCAG+AGG | 0.568170 | 7.1:+69112840 | MS.gene88053:CDS |
| AAGGGTTCAGGAGATTGACT+TGG | 0.577804 | 7.1:-69112085 | None:intergenic |
| GAATTAATAGAGGTAGCCAT+TGG | 0.590876 | 7.1:-69109637 | None:intergenic |
| AAGAAGCTACAATACGATTG+AGG | 0.591247 | 7.1:-69109721 | None:intergenic |
| CTAATTGTATTGCCAAGGCA+AGG | 0.596068 | 7.1:-69113416 | None:intergenic |
| GCTCCAGAGGGCTATTAACT+GGG | 0.601563 | 7.1:+69112853 | MS.gene88053:CDS |
| AGAAGCTTAAGCTCAGTCCC+TGG | 0.601867 | 7.1:-69110367 | None:intergenic |
| TAAGGGAGAATCTTGCTCTA+GGG | 0.602429 | 7.1:+69112831 | MS.gene88053:CDS |
| TGAGGAGAGCGAGAAAGTGA+GGG | 0.615692 | 7.1:-69109703 | None:intergenic |
| TGTTTACCAAGTCCGGCAAG+AGG | 0.630904 | 7.1:-69113628 | None:intergenic |
| CATCCAATATTAATAAATCG+GGG | 0.639918 | 7.1:-69113603 | None:intergenic |
| ACCGACCCTTTCCGGCACCA+AGG | 0.641973 | 7.1:-69112104 | None:intergenic |
| CCCTTGGTGCCGGAAAGGGT+CGG | 0.645717 | 7.1:+69112103 | MS.gene88053:CDS |
| GATGTTAGCTATCAACCACC+AGG | 0.652280 | 7.1:+69110349 | MS.gene88053:CDS |
| AGCTTAAGCTCAGTCCCTGG+TGG | 0.655370 | 7.1:-69110364 | None:intergenic |
| ATGTGAATAGATCCAGATGT+TGG | 0.656736 | 7.1:-69112037 | None:intergenic |
| AGAAGAGTAACTGCAGCGAG+TGG | 0.657091 | 7.1:-69109755 | None:intergenic |
| TTGTCTTCCAGTTTCCAGAG+AGG | 0.657449 | 7.1:+69112128 | MS.gene88053:CDS |
| TGGTGGTTTGAGGAAGTGAA+AGG | 0.664873 | 7.1:-69109668 | None:intergenic |
| AATCCTCATTCTCTCAGTGG+CGG | 0.673252 | 7.1:+69113381 | MS.gene88053:CDS |
| GAGGGAAAAGAAGAAAGTGG+TGG | 0.674357 | 7.1:-69109685 | None:intergenic |
| AAGAATCCTCATTCTCTCAG+TGG | 0.689753 | 7.1:+69113378 | MS.gene88053:CDS |
| TCTTGCTCTAGGGCTCCAGA+GGG | 0.699634 | 7.1:+69112841 | MS.gene88053:CDS |
| ATGTTAGCTATCAACCACCA+GGG | 0.741890 | 7.1:+69110350 | MS.gene88053:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr7.1:69112925-69112906 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr7.1:69112926-69112907 | None:intergenic | 0.0% |
| !! | ACATAATTGAATTTAATTAA+GGG | - | chr7.1:69110990-69111009 | None:intergenic | 10.0% |
| !! | TACATAATTGAATTTAATTA+AGG | - | chr7.1:69110991-69111010 | None:intergenic | 10.0% |
| !!! | AAATATTTTAAAAACCAAAT+CGG | - | chr7.1:69111541-69111560 | None:intergenic | 10.0% |
| !!! | ATAAGTAAATTTTTTTTTGT+AGG | - | chr7.1:69110533-69110552 | None:intergenic | 10.0% |
| !!! | ATTATGTATCATTAATTTTT+AGG | + | chr7.1:69111003-69111022 | MS.gene88053:intron | 10.0% |
| !!! | TAAGTAAATTTTTTTTTGTA+GGG | - | chr7.1:69110532-69110551 | None:intergenic | 10.0% |
| !!! | TCATTTTTTCAAATTATTAT+CGG | + | chr7.1:69111099-69111118 | MS.gene88053:intron | 10.0% |
| !!! | TTATGTATCATTAATTTTTA+GGG | + | chr7.1:69111004-69111023 | MS.gene88053:intron | 10.0% |
| !!! | TTTTAAAATATTTCTTAGAA+CGG | + | chr7.1:69111548-69111567 | MS.gene88053:intron | 10.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr7.1:69110844-69110863 | MS.gene88053:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr7.1:69110916-69110935 | MS.gene88053:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr7.1:69110935-69110916 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | + | chr7.1:69110725-69110744 | MS.gene88053:intron | 15.0% |
| !! | ATTTATTCGTGTTTAATTAA+AGG | + | chr7.1:69110428-69110447 | MS.gene88053:intron | 15.0% |
| !! | GATTTATATTTGCATAATTA+GGG | + | chr7.1:69110137-69110156 | MS.gene88053:intron | 15.0% |
| !! | TAATTCAATTTGATGAAATT+TGG | - | chr7.1:69111390-69111409 | None:intergenic | 15.0% |
| !! | TGATTTATATTTGCATAATT+AGG | + | chr7.1:69110136-69110155 | MS.gene88053:intron | 15.0% |
| !! | TTAAAAAATTTAAGAGTTTC+AGG | - | chr7.1:69110594-69110613 | None:intergenic | 15.0% |
| !! | TTCATCCAATATTAATAAAT+CGG | - | chr7.1:69113608-69113627 | None:intergenic | 15.0% |
| !! | TTTATTCGTGTTTAATTAAA+GGG | + | chr7.1:69110429-69110448 | MS.gene88053:intron | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | - | chr7.1:69110565-69110584 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | + | chr7.1:69110760-69110779 | MS.gene88053:intron | 15.0% |
| !!! | ATTAATTTTTAGGGATTTTT+AGG | + | chr7.1:69111013-69111032 | MS.gene88053:intron | 15.0% |
| !!! | CAATTTTTACTCATTTTTTA+TGG | + | chr7.1:69109936-69109955 | MS.gene88053:intron | 15.0% |
| !!! | CATATTTTACACATTTTTTA+TGG | + | chr7.1:69109846-69109865 | MS.gene88053:intron | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | - | chr7.1:69110566-69110585 | None:intergenic | 15.0% |
| !!! | TTTTAACATTCAAATATTCT+TGG | + | chr7.1:69112559-69112578 | MS.gene88053:intron | 15.0% |
| !! | AAATAATTGCAAAAAGCTAA+TGG | - | chr7.1:69112685-69112704 | None:intergenic | 20.0% |
| !! | AATTGAATTATGAATCAGTT+TGG | + | chr7.1:69111400-69111419 | MS.gene88053:intron | 20.0% |
| !! | ATAGAGTTGAAAATTGAAAT+TGG | + | chr7.1:69110275-69110294 | MS.gene88053:intron | 20.0% |
| !! | ATTGAATTATGAATCAGTTT+GGG | + | chr7.1:69111401-69111420 | MS.gene88053:intron | 20.0% |
| !! | CATTTCTTTAAATATTTCGA+GGG | + | chr7.1:69111619-69111638 | MS.gene88053:intron | 20.0% |
| !! | CTTGAAATGATTTAAGAAAA+TGG | + | chr7.1:69111245-69111264 | MS.gene88053:intron | 20.0% |
| !! | TCACTAAAAAGTAAAAAAGA+TGG | - | chr7.1:69111911-69111930 | None:intergenic | 20.0% |
| !! | TCATCCAATATTAATAAATC+GGG | - | chr7.1:69113607-69113626 | None:intergenic | 20.0% |
| !! | TCATTTCTTTAAATATTTCG+AGG | + | chr7.1:69111618-69111637 | MS.gene88053:intron | 20.0% |
| !! | TCGAAATATTTAAAGAAATG+AGG | - | chr7.1:69111619-69111638 | None:intergenic | 20.0% |
| !! | TGAGTAACAATAAATTTGTA+GGG | - | chr7.1:69112291-69112310 | None:intergenic | 20.0% |
| !! | TTAAAGAAATGAGGATAAAT+TGG | - | chr7.1:69111610-69111629 | None:intergenic | 20.0% |
| !! | TTGAGTAACAATAAATTTGT+AGG | - | chr7.1:69112292-69112311 | None:intergenic | 20.0% |
| !!! | AATAAATAATACCTTTTCTC+TGG | - | chr7.1:69110415-69110434 | None:intergenic | 20.0% |
| !!! | ATTAGAGATAAGTTTTTCAT+CGG | + | chr7.1:69112489-69112508 | MS.gene88053:intron | 20.0% |
| !!! | ATTGTCATGTTTTTTGATTT+AGG | + | chr7.1:69110321-69110340 | MS.gene88053:intron | 20.0% |
| !!! | GTTTTATTTGATTATTTGAC+CGG | + | chr7.1:69111452-69111471 | MS.gene88053:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr7.1:69110814-69110833 | None:intergenic | 20.0% |
| !!! | TAAAGGGTTAATTATGTTTT+TGG | + | chr7.1:69110445-69110464 | MS.gene88053:intron | 20.0% |
| !!! | TGAATTTGGTTTTGATTATA+CGG | + | chr7.1:69110017-69110036 | MS.gene88053:intron | 20.0% |
| !!! | TTAAGGGTTAATTATGTTTT+TGG | - | chr7.1:69110974-69110993 | None:intergenic | 20.0% |
| ! | AAAAGGGTAATGATCAATTA+AGG | + | chr7.1:69112813-69112832 | MS.gene88053:CDS | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr7.1:69110855-69110874 | MS.gene88053:intron | 25.0% |
| ! | AAAGAACAATTGATTGTAGA+AGG | - | chr7.1:69112367-69112386 | None:intergenic | 25.0% |
| ! | AAAGGGTAATGATCAATTAA+GGG | + | chr7.1:69112814-69112833 | MS.gene88053:CDS | 25.0% |
| ! | AATCCCCGATTTATTAATAT+TGG | + | chr7.1:69113600-69113619 | MS.gene88053:CDS | 25.0% |
| ! | AGTAGTATATTTGCATGATT+AGG | + | chr7.1:69110248-69110267 | MS.gene88053:intron | 25.0% |
| ! | ATGATTGAAATCAAATGTGT+AGG | + | chr7.1:69111269-69111288 | MS.gene88053:intron | 25.0% |
| ! | CATCCAATATTAATAAATCG+GGG | - | chr7.1:69113606-69113625 | None:intergenic | 25.0% |
| ! | CATTTGTTTGTCATAACTAT+AGG | + | chr7.1:69113329-69113348 | MS.gene88053:intron | 25.0% |
| ! | CTATAGTTATGACAAACAAA+TGG | - | chr7.1:69113331-69113350 | None:intergenic | 25.0% |
| ! | GAGTAACAATAAATTTGTAG+GGG | - | chr7.1:69112290-69112309 | None:intergenic | 25.0% |
| ! | GATTATAGAGTTGAAATTGA+AGG | + | chr7.1:69110159-69110178 | MS.gene88053:intron | 25.0% |
| ! | GTAGTATATTTGCATGATTA+GGG | + | chr7.1:69110249-69110268 | MS.gene88053:intron | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | - | chr7.1:69110790-69110809 | None:intergenic | 25.0% |
| ! | TAACTAAACATGTAAACAAC+AGG | - | chr7.1:69111953-69111972 | None:intergenic | 25.0% |
| ! | TCTATTCACATCCAAAAATA+CGG | + | chr7.1:69112049-69112068 | MS.gene88053:CDS | 25.0% |
| !! | TTGTAACACAATACTTTTGT+AGG | + | chr7.1:69112466-69112485 | MS.gene88053:intron | 25.0% |
| !!! | AAACCTGTAAAAAGTGTTTA+GGG | - | chr7.1:69112592-69112611 | None:intergenic | 25.0% |
| !!! | ACATTTTTGGTAAAAGACAA+AGG | + | chr7.1:69111782-69111801 | MS.gene88053:intron | 25.0% |
| !!! | TGATTCAACTATTTTAAACC+AGG | - | chr7.1:69111495-69111514 | None:intergenic | 25.0% |
| AAAAGCTAATGGAAACAGTT+AGG | - | chr7.1:69112674-69112693 | None:intergenic | 30.0% | |
| AAAGTGAAAATCACACCTTA+AGG | - | chr7.1:69113055-69113074 | None:intergenic | 30.0% | |
| AAATTAATCCAATTGTCGCT+TGG | - | chr7.1:69113554-69113573 | None:intergenic | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | + | chr7.1:69110931-69110950 | MS.gene88053:intron | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr7.1:69110950-69110931 | None:intergenic | 30.0% | |
| ACGAAGAATAGACATAGAAA+AGG | + | chr7.1:69112311-69112330 | MS.gene88053:intron | 30.0% | |
| ACTTACTAATTGTATTGCCA+AGG | - | chr7.1:69113424-69113443 | None:intergenic | 30.0% | |
| AGTTTATATTCATACCTCTC+TGG | - | chr7.1:69112145-69112164 | None:intergenic | 30.0% | |
| ATAAAAGACACCTTCACAAA+AGG | + | chr7.1:69113152-69113171 | MS.gene88053:intron | 30.0% | |
| ATCTCTAAATCTCTACACAT+TGG | + | chr7.1:69112724-69112743 | MS.gene88053:intron | 30.0% | |
| ATTGGCATACAAAAATTCGT+AGG | - | chr7.1:69111592-69111611 | None:intergenic | 30.0% | |
| CAAAAACAAGCTAATAGAAC+TGG | - | chr7.1:69111366-69111385 | None:intergenic | 30.0% | |
| CGAAAACTTGAAACAGTTAT+TGG | - | chr7.1:69109805-69109824 | None:intergenic | 30.0% | |
| CTATTCACATCCAAAAATAC+GGG | + | chr7.1:69112050-69112069 | MS.gene88053:CDS | 30.0% | |
| GAATTCGTGGAATTTGAATT+TGG | + | chr7.1:69110003-69110022 | MS.gene88053:intron | 30.0% | |
| GAGTTGAAAATTGAAATTGG+AGG | + | chr7.1:69110278-69110297 | MS.gene88053:intron | 30.0% | |
| GTTTGAAAAACTGAACTGAA+CGG | + | chr7.1:69111172-69111191 | MS.gene88053:intron | 30.0% | |
| TAATTCGATGTAAACACATG+TGG | - | chr7.1:69111077-69111096 | None:intergenic | 30.0% | |
| TATTCACATCCAAAAATACG+GGG | + | chr7.1:69112051-69112070 | MS.gene88053:CDS | 30.0% | |
| TCGTAGGAAAATTCATATTG+AGG | - | chr7.1:69111576-69111595 | None:intergenic | 30.0% | |
| TGTTTGTCATAACTATAGGT+TGG | + | chr7.1:69113333-69113352 | MS.gene88053:intron | 30.0% | |
| TTAAAACGAAAAGAGACCAT+AGG | - | chr7.1:69111992-69112011 | None:intergenic | 30.0% | |
| TTGATTATACGGAATGCAAT+TGG | + | chr7.1:69110028-69110047 | MS.gene88053:intron | 30.0% | |
| ! | AAACGTTAAATCGCAGTTTT+GGG | + | chr7.1:69111197-69111216 | MS.gene88053:intron | 30.0% |
| ! | AACTATAGGTTGGATTAAGT+GGG | + | chr7.1:69113343-69113362 | MS.gene88053:intron | 30.0% |
| ! | AGTGTTTTACTTGAATCTGA+AGG | + | chr7.1:69112523-69112542 | MS.gene88053:intron | 30.0% |
| ! | ATTTTTCACTTCCAGAGAAA+AGG | + | chr7.1:69110401-69110420 | MS.gene88053:CDS | 30.0% |
| ! | CAAGTTTAGAACACTATGAA+AGG | + | chr7.1:69110628-69110647 | MS.gene88053:intron | 30.0% |
| ! | TAAACGTTAAATCGCAGTTT+TGG | + | chr7.1:69111196-69111215 | MS.gene88053:intron | 30.0% |
| ! | TAACTATAGGTTGGATTAAG+TGG | + | chr7.1:69113342-69113361 | MS.gene88053:intron | 30.0% |
| ! | TGCTCGATGTTTTACATTTT+TGG | + | chr7.1:69111769-69111788 | MS.gene88053:intron | 30.0% |
| ! | TTTTTATCCATTTGTCAGAG+TGG | + | chr7.1:69112633-69112652 | MS.gene88053:intron | 30.0% |
| !! | GAAACCTGTAAAAAGTGTTT+AGG | - | chr7.1:69112593-69112612 | None:intergenic | 30.0% |
| !! | TGATTTTAAGAGAGACAACA+AGG | - | chr7.1:69111708-69111727 | None:intergenic | 30.0% |
| !!! | ACAGATTTTGAGATTCTTAG+TGG | + | chr7.1:69109876-69109895 | MS.gene88053:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | + | chr7.1:69110887-69110906 | MS.gene88053:intron | 30.0% |
| !!! | TACTTGATGAAGTCACTTTT+GGG | + | chr7.1:69112780-69112799 | MS.gene88053:CDS | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | + | chr7.1:69110886-69110905 | MS.gene88053:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | chr7.1:69110763-69110782 | MS.gene88053:intron | 30.0% |
| AAACATGAAGCAAAACCAAG+CGG | - | chr7.1:69113489-69113508 | None:intergenic | 35.0% | |
| AACTACTATCCTTTCGAATC+CGG | + | chr7.1:69111732-69111751 | MS.gene88053:intron | 35.0% | |
| AAGAAGCTACAATACGATTG+AGG | - | chr7.1:69109724-69109743 | None:intergenic | 35.0% | |
| AAGTTACTGTTAAGGGGATT+GGG | + | chr7.1:69111648-69111667 | MS.gene88053:intron | 35.0% | |
| ACACCAACTTACTCTTATGA+AGG | - | chr7.1:69113103-69113122 | None:intergenic | 35.0% | |
| ACACCTTCATAAGAGTAAGT+TGG | + | chr7.1:69113097-69113116 | MS.gene88053:intron | 35.0% | |
| AGACATAGAAAAGGTCACAA+GGG | + | chr7.1:69112320-69112339 | MS.gene88053:intron | 35.0% | |
| ATAGTTGAATCATGACTCTG+AGG | + | chr7.1:69111503-69111522 | MS.gene88053:intron | 35.0% | |
| ATGTGAATAGATCCAGATGT+TGG | - | chr7.1:69112040-69112059 | None:intergenic | 35.0% | |
| ATTATACGGAATGCAATTGG+AGG | + | chr7.1:69110031-69110050 | MS.gene88053:intron | 35.0% | |
| ATTATTGTCACTCCTACCTA+TGG | + | chr7.1:69111973-69111992 | MS.gene88053:intron | 35.0% | |
| CGAATTCATGAAACTGTAAC+TGG | - | chr7.1:69109990-69110009 | None:intergenic | 35.0% | |
| CTTAAGGTGTGACTTGATAA+AGG | - | chr7.1:69113039-69113058 | None:intergenic | 35.0% | |
| CTTTATCAAGTCACACCTTA+AGG | + | chr7.1:69113037-69113056 | MS.gene88053:intron | 35.0% | |
| GAAATCAAATGTGTAGGAGT+CGG | + | chr7.1:69111275-69111294 | MS.gene88053:intron | 35.0% | |
| GAACAATTGATTGTAGAAGG+TGG | - | chr7.1:69112364-69112383 | None:intergenic | 35.0% | |
| GAGCATGTATATGTGTTAAC+CGG | - | chr7.1:69111754-69111773 | None:intergenic | 35.0% | |
| GGAATAAACAAACCAACATC+TGG | + | chr7.1:69112025-69112044 | MS.gene88053:CDS | 35.0% | |
| GGTGATTGGTGAATTAATAG+AGG | - | chr7.1:69109650-69109669 | None:intergenic | 35.0% | |
| GGTTAACACATACACAGTTT+GGG | + | chr7.1:69111834-69111853 | MS.gene88053:intron | 35.0% | |
| GTAGTCGAAGTTACTGTTAA+GGG | + | chr7.1:69111641-69111660 | MS.gene88053:intron | 35.0% | |
| GTATCAGCAACAAAATACCT+AGG | - | chr7.1:69112758-69112777 | None:intergenic | 35.0% | |
| GTTACAGTTTCATGAATTCG+TGG | + | chr7.1:69109990-69110009 | MS.gene88053:intron | 35.0% | |
| TAGACATAGAAAAGGTCACA+AGG | + | chr7.1:69112319-69112338 | MS.gene88053:intron | 35.0% | |
| TAGTCGAAGTTACTGTTAAG+GGG | + | chr7.1:69111642-69111661 | MS.gene88053:intron | 35.0% | |
| TGACAACTAAAACATCTGAC+AGG | - | chr7.1:69113526-69113545 | None:intergenic | 35.0% | |
| TGAGACTCTGTAATGTCAAA+AGG | - | chr7.1:69112887-69112906 | None:intergenic | 35.0% | |
| TGGATTAAGTGGGATATCAT+TGG | + | chr7.1:69113353-69113372 | MS.gene88053:CDS | 35.0% | |
| TGGTTAACACATACACAGTT+TGG | + | chr7.1:69111833-69111852 | MS.gene88053:intron | 35.0% | |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr7.1:69113165-69113184 | None:intergenic | 35.0% |
| ! | CACAGTTTGGGTCTAATTTT+CGG | + | chr7.1:69111846-69111865 | MS.gene88053:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | chr7.1:69110947-69110966 | MS.gene88053:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | - | chr7.1:69110966-69110947 | None:intergenic | 35.0% |
| ! | TGATCATTACCCTTTTGTCT+TGG | - | chr7.1:69112809-69112828 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | chr7.1:69110946-69110965 | MS.gene88053:intron | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | - | chr7.1:69110965-69110946 | None:intergenic | 35.0% |
| !! | CGTTTTAAATAGCTTCTTGC+AGG | + | chr7.1:69112004-69112023 | MS.gene88053:intron | 35.0% |
| !! | CTACCCTAAACACTTTTTAC+AGG | + | chr7.1:69112586-69112605 | MS.gene88053:intron | 35.0% |
| !! | GTACTTGATGAAGTCACTTT+TGG | + | chr7.1:69112779-69112798 | MS.gene88053:CDS | 35.0% |
| !! | GTAGTGTTGATGTCATACAT+AGG | - | chr7.1:69111055-69111074 | None:intergenic | 35.0% |
| !! | TAGTTACAAGCTCTGAAGTA+CGG | - | chr7.1:69111143-69111162 | None:intergenic | 35.0% |
| !! | TGAATCAGTTTGGGACATTT+TGG | + | chr7.1:69111410-69111429 | MS.gene88053:intron | 35.0% |
| AACATGAAGCAAAACCAAGC+GGG | - | chr7.1:69113488-69113507 | None:intergenic | 40.0% | |
| AACGAAAAGAGACCATAGGT+AGG | - | chr7.1:69111988-69112007 | None:intergenic | 40.0% | |
| AAGAAGAAAGTGGTGGTTTG+AGG | - | chr7.1:69109681-69109700 | None:intergenic | 40.0% | |
| AAGAATCCTCATTCTCTCAG+TGG | + | chr7.1:69113378-69113397 | MS.gene88053:CDS | 40.0% | |
| AGACAACAAGGAGATACAAC+TGG | - | chr7.1:69111696-69111715 | None:intergenic | 40.0% | |
| AGTGAGGGAAAAGAAGAAAG+TGG | - | chr7.1:69109691-69109710 | None:intergenic | 40.0% | |
| ATATTGGATGAACCTCTTGC+CGG | + | chr7.1:69113616-69113635 | MS.gene88053:CDS | 40.0% | |
| ATCCAAAAATACGGGGATGA+TGG | + | chr7.1:69112058-69112077 | MS.gene88053:CDS | 40.0% | |
| ATGTGTTAACCGGATTCGAA+AGG | - | chr7.1:69111744-69111763 | None:intergenic | 40.0% | |
| ATGTTAGCTATCAACCACCA+GGG | + | chr7.1:69110350-69110369 | MS.gene88053:CDS | 40.0% | |
| ATTATCGGCATTAACGTGTC+CGG | + | chr7.1:69111114-69111133 | MS.gene88053:intron | 40.0% | |
| CAATACACCACTCTGACAAA+TGG | - | chr7.1:69112643-69112662 | None:intergenic | 40.0% | |
| CGTTCTTTCAATTTCGCTGT+TGG | + | chr7.1:69112262-69112281 | MS.gene88053:intron | 40.0% | |
| CTAATTGTATTGCCAAGGCA+AGG | - | chr7.1:69113419-69113438 | None:intergenic | 40.0% | |
| GAAGTTACTGTTAAGGGGAT+TGG | + | chr7.1:69111647-69111666 | MS.gene88053:intron | 40.0% | |
| GGTAGTCGAAGTTACTGTTA+AGG | + | chr7.1:69111640-69111659 | MS.gene88053:intron | 40.0% | |
| TAAGGGAGAATCTTGCTCTA+GGG | + | chr7.1:69112831-69112850 | MS.gene88053:CDS | 40.0% | |
| TACGTGTAGTAGCTCATATC+TGG | + | chr7.1:69111813-69111832 | MS.gene88053:intron | 40.0% | |
| TCCAAAAATACGGGGATGAT+GGG | + | chr7.1:69112059-69112078 | MS.gene88053:CDS | 40.0% | |
| TGATAAAGGACACCACCAAA+GGG | - | chr7.1:69113025-69113044 | None:intergenic | 40.0% | |
| TGGAAAAACAACTCTCTTGC+AGG | + | chr7.1:69111881-69111900 | MS.gene88053:CDS | 40.0% | |
| TTAAGGGAGAATCTTGCTCT+AGG | + | chr7.1:69112830-69112849 | MS.gene88053:CDS | 40.0% | |
| TTATGTTACAAGCCACCCTT+TGG | + | chr7.1:69113007-69113026 | MS.gene88053:intron | 40.0% | |
| TTGAGGAAGTGAAAGGTGAT+TGG | - | chr7.1:69109664-69109683 | None:intergenic | 40.0% | |
| TTGATAAAGGACACCACCAA+AGG | - | chr7.1:69113026-69113045 | None:intergenic | 40.0% | |
| ! | ATTCATACCTCTCTGGAAAC+TGG | - | chr7.1:69112138-69112157 | None:intergenic | 40.0% |
| !!! | AAATCGCAGTTTTGGGTGTT+TGG | + | chr7.1:69111204-69111223 | MS.gene88053:intron | 40.0% |
| !!! | TTGATGAAGTCACTTTTGGG+TGG | + | chr7.1:69112783-69112802 | MS.gene88053:CDS | 40.0% |
| AAGACAATACCGACCCTTTC+CGG | - | chr7.1:69112115-69112134 | None:intergenic | 45.0% | |
| AAGGGTTCAGGAGATTGACT+TGG | - | chr7.1:69112088-69112107 | None:intergenic | 45.0% | |
| AAGTCAATCTCCTGAACCCT+TGG | + | chr7.1:69112087-69112106 | MS.gene88053:CDS | 45.0% | |
| AATCCTCATTCTCTCAGTGG+CGG | + | chr7.1:69113381-69113400 | MS.gene88053:CDS | 45.0% | |
| GAACTGGCACTTAAGAGTGA+AGG | - | chr7.1:69111350-69111369 | None:intergenic | 45.0% | |
| GAGGGAAAAGAAGAAAGTGG+TGG | - | chr7.1:69109688-69109707 | None:intergenic | 45.0% | |
| GATGTTAGCTATCAACCACC+AGG | + | chr7.1:69110349-69110368 | MS.gene88053:CDS | 45.0% | |
| GGACAAAACTGCGATCAAAC+CGG | - | chr7.1:69111474-69111493 | None:intergenic | 45.0% | |
| TCAGTCAACCAAGCGACAAT+TGG | + | chr7.1:69113543-69113562 | MS.gene88053:intron | 45.0% | |
| TGGTGGTTTGAGGAAGTGAA+AGG | - | chr7.1:69109671-69109690 | None:intergenic | 45.0% | |
| TTGTCTTCCAGTTTCCAGAG+AGG | + | chr7.1:69112128-69112147 | MS.gene88053:CDS | 45.0% | |
| TTTGGGTGGCCAAGACAAAA+GGG | + | chr7.1:69112797-69112816 | MS.gene88053:CDS | 45.0% | |
| ! | GCTTCATGTTTTCACCTGAC+TGG | + | chr7.1:69113498-69113517 | MS.gene88053:intron | 45.0% |
| ! | GGTCTAATTTTCGGACAGAG+CGG | + | chr7.1:69111855-69111874 | MS.gene88053:CDS | 45.0% |
| ! | TCCCATCATCCCCGTATTTT+TGG | - | chr7.1:69112063-69112082 | None:intergenic | 45.0% |
| !! | AAGCTCTGAAGTACGGATAC+CGG | - | chr7.1:69111136-69111155 | None:intergenic | 45.0% |
| !! | ACACATTGGTGTTGCAACCT+AGG | + | chr7.1:69112738-69112757 | MS.gene88053:intron | 45.0% |
| !! | GTTTGATCGCAGTTTTGTCC+TGG | + | chr7.1:69111474-69111493 | MS.gene88053:intron | 45.0% |
| !! | TTTTGGGTGGCCAAGACAAA+AGG | + | chr7.1:69112796-69112815 | MS.gene88053:CDS | 45.0% |
| !! | ATATATATATATATATACAT+GGG | + | chr7.1:69112984-69113003 | MS.gene88053:intron | 5.0% |
| !! | TATATATATATATATATACA+TGG | + | chr7.1:69112983-69113002 | MS.gene88053:intron | 5.0% |
| !!! | TTTATTTTTTTAAAATTTTC+AGG | + | chr7.1:69113573-69113592 | MS.gene88053:intron | 5.0% |
| AAAATGCAGCCATACCCGCT+TGG | + | chr7.1:69113471-69113490 | MS.gene88053:intron | 50.0% | |
| AGAAGAGTAACTGCAGCGAG+TGG | - | chr7.1:69109758-69109777 | None:intergenic | 50.0% | |
| AGAAGCTTAAGCTCAGTCCC+TGG | - | chr7.1:69110370-69110389 | None:intergenic | 50.0% | |
| AGGTGGTAAGCCTGAAACGT+TGG | - | chr7.1:69112347-69112366 | None:intergenic | 50.0% | |
| CTACCCAGTTAATAGCCCTC+TGG | - | chr7.1:69112859-69112878 | None:intergenic | 50.0% | |
| GAAGCAAAACCAAGCGGGTA+TGG | - | chr7.1:69113483-69113502 | None:intergenic | 50.0% | |
| GCTCCAGAGGGCTATTAACT+GGG | + | chr7.1:69112853-69112872 | MS.gene88053:CDS | 50.0% | |
| TAAAGGACACCACCAAAGGG+TGG | - | chr7.1:69113022-69113041 | None:intergenic | 50.0% | |
| TAACCGCCACTGAGAGAATG+AGG | - | chr7.1:69113387-69113406 | None:intergenic | 50.0% | |
| TCACAAGGGACCAACGTTTC+AGG | + | chr7.1:69112334-69112353 | MS.gene88053:intron | 50.0% | |
| TGAGGAGAGCGAGAAAGTGA+GGG | - | chr7.1:69109706-69109725 | None:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr7.1:69113010-69113029 | MS.gene88053:intron | 50.0% | |
| TTACAAACGTCGCCTTGCCT+TGG | + | chr7.1:69113404-69113423 | MS.gene88053:CDS | 50.0% | |
| TTGAGGAGAGCGAGAAAGTG+AGG | - | chr7.1:69109707-69109726 | None:intergenic | 50.0% | |
| ! | ATTTTCGGACAGAGCGGAAG+TGG | + | chr7.1:69111861-69111880 | MS.gene88053:CDS | 50.0% |
| ! | GGTCTCAACTCTTGCCGATT+TGG | + | chr7.1:69111524-69111543 | MS.gene88053:intron | 50.0% |
| ACATCTGACAGGAGCCAGTC+AGG | - | chr7.1:69113515-69113534 | None:intergenic | 55.0% | |
| AGCTTAAGCTCAGTCCCTGG+TGG | - | chr7.1:69110367-69110386 | None:intergenic | 55.0% | |
| GGCTCCAGAGGGCTATTAAC+TGG | + | chr7.1:69112852-69112871 | MS.gene88053:CDS | 55.0% | |
| GTAACTGCAGCGAGTGGTTG+AGG | - | chr7.1:69109752-69109771 | None:intergenic | 55.0% | |
| ! | ATCTCCTGAACCCTTGGTGC+CGG | + | chr7.1:69112093-69112112 | MS.gene88053:CDS | 55.0% |
| !! | ATCTTGCTCTAGGGCTCCAG+AGG | + | chr7.1:69112840-69112859 | MS.gene88053:CDS | 55.0% |
| !! | TCTTGCTCTAGGGCTCCAGA+GGG | + | chr7.1:69112841-69112860 | MS.gene88053:CDS | 55.0% |
| !! | TGAACCCTTGGTGCCGGAAA+GGG | + | chr7.1:69112099-69112118 | MS.gene88053:CDS | 55.0% |
| CTTTCCGGCACCAAGGGTTC+AGG | - | chr7.1:69112100-69112119 | None:intergenic | 60.0% | |
| !! | CTGAACCCTTGGTGCCGGAA+AGG | + | chr7.1:69112098-69112117 | MS.gene88053:CDS | 60.0% |
| ACCGACCCTTTCCGGCACCA+AGG | - | chr7.1:69112107-69112126 | None:intergenic | 65.0% | |
| CCGACCCTTTCCGGCACCAA+GGG | - | chr7.1:69112106-69112125 | None:intergenic | 65.0% | |
| !! | CCCTTGGTGCCGGAAAGGGT+CGG | + | chr7.1:69112103-69112122 | MS.gene88053:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 69109640 | 69113675 | 69109640 | ID=MS.gene88053 |
| chr7.1 | mRNA | 69109640 | 69113675 | 69109640 | ID=MS.gene88053.t1;Parent=MS.gene88053 |
| chr7.1 | exon | 69109640 | 69109783 | 69109640 | ID=MS.gene88053.t1.exon1;Parent=MS.gene88053.t1 |
| chr7.1 | CDS | 69109640 | 69109783 | 69109640 | ID=cds.MS.gene88053.t1;Parent=MS.gene88053.t1 |
| chr7.1 | exon | 69110343 | 69110422 | 69110343 | ID=MS.gene88053.t1.exon2;Parent=MS.gene88053.t1 |
| chr7.1 | CDS | 69110343 | 69110422 | 69110343 | ID=cds.MS.gene88053.t1;Parent=MS.gene88053.t1 |
| chr7.1 | exon | 69111851 | 69111902 | 69111851 | ID=MS.gene88053.t1.exon3;Parent=MS.gene88053.t1 |
| chr7.1 | CDS | 69111851 | 69111902 | 69111851 | ID=cds.MS.gene88053.t1;Parent=MS.gene88053.t1 |
| chr7.1 | exon | 69112016 | 69112149 | 69112016 | ID=MS.gene88053.t1.exon4;Parent=MS.gene88053.t1 |
| chr7.1 | CDS | 69112016 | 69112149 | 69112016 | ID=cds.MS.gene88053.t1;Parent=MS.gene88053.t1 |
| chr7.1 | exon | 69112760 | 69112874 | 69112760 | ID=MS.gene88053.t1.exon5;Parent=MS.gene88053.t1 |
| chr7.1 | CDS | 69112760 | 69112874 | 69112760 | ID=cds.MS.gene88053.t1;Parent=MS.gene88053.t1 |
| chr7.1 | exon | 69113351 | 69113437 | 69113351 | ID=MS.gene88053.t1.exon6;Parent=MS.gene88053.t1 |
| chr7.1 | CDS | 69113351 | 69113437 | 69113351 | ID=cds.MS.gene88053.t1;Parent=MS.gene88053.t1 |
| chr7.1 | exon | 69113595 | 69113675 | 69113595 | ID=MS.gene88053.t1.exon7;Parent=MS.gene88053.t1 |
| chr7.1 | CDS | 69113595 | 69113675 | 69113595 | ID=cds.MS.gene88053.t1;Parent=MS.gene88053.t1 |
| Gene Sequence |
| Protein sequence |
