Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88116.t1 | XP_003602984.1 | 94.9 | 391 | 20 | 0 | 1 | 391 | 1 | 391 | 1.70E-209 | 738.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88116.t1 | Q9S7T8 | 50.4 | 389 | 185 | 4 | 5 | 387 | 4 | 390 | 9.7e-105 | 381.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88116.t1 | G7J5R9 | 94.9 | 391 | 20 | 0 | 1 | 391 | 1 | 391 | 1.2e-209 | 738.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene065944 | MS.gene88116 | PPI |
MS.gene006610 | MS.gene88116 | PPI |
MS.gene045585 | MS.gene88116 | PPI |
MS.gene031697 | MS.gene88116 | PPI |
MS.gene065945 | MS.gene88116 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88116.t1 | MTR_3g101130 | 94.885 | 391 | 20 | 0 | 1 | 391 | 1 | 391 | 0.0 | 758 |
MS.gene88116.t1 | MTR_3g101180 | 65.414 | 399 | 127 | 4 | 1 | 388 | 1 | 399 | 8.43e-179 | 503 |
MS.gene88116.t1 | MTR_7g050750 | 64.359 | 390 | 134 | 2 | 5 | 389 | 7 | 396 | 2.83e-174 | 491 |
MS.gene88116.t1 | MTR_8g461160 | 63.776 | 392 | 137 | 2 | 1 | 387 | 1 | 392 | 1.33e-173 | 489 |
MS.gene88116.t1 | MTR_3g101010 | 64.010 | 389 | 133 | 3 | 5 | 389 | 4 | 389 | 9.77e-168 | 474 |
MS.gene88116.t1 | MTR_7g050810 | 63.077 | 390 | 137 | 3 | 6 | 389 | 16 | 404 | 1.48e-167 | 475 |
MS.gene88116.t1 | MTR_3g101200 | 64.103 | 390 | 114 | 4 | 1 | 388 | 26 | 391 | 2.72e-167 | 474 |
MS.gene88116.t1 | MTR_3g018740 | 62.595 | 393 | 134 | 5 | 1 | 387 | 1 | 386 | 4.44e-165 | 468 |
MS.gene88116.t1 | MTR_7g451890 | 61.183 | 389 | 146 | 2 | 6 | 389 | 14 | 402 | 2.61e-163 | 464 |
MS.gene88116.t1 | MTR_7g047780 | 60.668 | 389 | 148 | 2 | 6 | 389 | 14 | 402 | 7.46e-162 | 460 |
MS.gene88116.t1 | MTR_4g045707 | 60.406 | 394 | 145 | 4 | 1 | 389 | 1 | 388 | 6.50e-161 | 457 |
MS.gene88116.t1 | MTR_8g027395 | 60.560 | 393 | 144 | 3 | 1 | 389 | 12 | 397 | 1.06e-159 | 454 |
MS.gene88116.t1 | MTR_4g088525 | 63.085 | 363 | 125 | 3 | 30 | 388 | 11 | 368 | 4.91e-155 | 441 |
MS.gene88116.t1 | MTR_3g101030 | 58.524 | 393 | 144 | 3 | 15 | 389 | 38 | 429 | 5.20e-155 | 444 |
MS.gene88116.t1 | MTR_8g027420 | 58.779 | 393 | 140 | 4 | 1 | 389 | 1 | 375 | 1.48e-152 | 436 |
MS.gene88116.t1 | MTR_2g046030 | 57.653 | 392 | 148 | 7 | 5 | 387 | 4 | 386 | 2.40e-147 | 423 |
MS.gene88116.t1 | MTR_2g045980 | 57.143 | 392 | 150 | 6 | 5 | 387 | 4 | 386 | 1.59e-146 | 421 |
MS.gene88116.t1 | MTR_3g048000 | 57.584 | 389 | 133 | 6 | 7 | 388 | 28 | 391 | 5.42e-146 | 419 |
MS.gene88116.t1 | MTR_4g088535 | 55.980 | 393 | 145 | 6 | 1 | 388 | 1 | 370 | 1.72e-138 | 400 |
MS.gene88116.t1 | MTR_3g101050 | 56.072 | 387 | 145 | 7 | 7 | 387 | 29 | 396 | 7.21e-136 | 394 |
MS.gene88116.t1 | MTR_3g015620 | 55.784 | 389 | 139 | 6 | 6 | 387 | 16 | 378 | 1.52e-131 | 382 |
MS.gene88116.t1 | MTR_3g102920 | 54.430 | 395 | 135 | 6 | 1 | 388 | 53 | 409 | 1.10e-129 | 379 |
MS.gene88116.t1 | MTR_3g101190 | 52.342 | 363 | 105 | 4 | 31 | 389 | 14 | 312 | 1.71e-116 | 342 |
MS.gene88116.t1 | MTR_3g100995 | 65.354 | 254 | 82 | 3 | 139 | 389 | 14 | 264 | 4.35e-114 | 333 |
MS.gene88116.t1 | MTR_7g050830 | 54.459 | 314 | 112 | 2 | 6 | 299 | 16 | 318 | 4.75e-108 | 320 |
MS.gene88116.t1 | MTR_3g015760 | 62.692 | 260 | 90 | 4 | 132 | 387 | 23 | 279 | 1.23e-98 | 295 |
MS.gene88116.t1 | MTR_3g100010 | 49.051 | 316 | 113 | 3 | 31 | 313 | 40 | 340 | 4.67e-98 | 296 |
MS.gene88116.t1 | MTR_3g018747 | 57.854 | 261 | 89 | 3 | 132 | 387 | 9 | 253 | 4.30e-96 | 287 |
MS.gene88116.t1 | MTR_3g114310 | 41.995 | 381 | 196 | 10 | 28 | 389 | 36 | 410 | 1.18e-82 | 259 |
MS.gene88116.t1 | MTR_3g111160 | 62.326 | 215 | 73 | 2 | 180 | 389 | 9 | 220 | 3.17e-82 | 251 |
MS.gene88116.t1 | MTR_3g100520 | 57.399 | 223 | 75 | 3 | 173 | 389 | 1 | 209 | 1.11e-81 | 249 |
MS.gene88116.t1 | MTR_3g101110 | 53.942 | 241 | 76 | 4 | 135 | 367 | 71 | 284 | 7.71e-76 | 237 |
MS.gene88116.t1 | MTR_3g099970 | 59.487 | 195 | 60 | 2 | 132 | 323 | 20 | 198 | 1.67e-74 | 230 |
MS.gene88116.t1 | MTR_2g046410 | 59.615 | 208 | 71 | 4 | 189 | 387 | 144 | 347 | 2.86e-74 | 235 |
MS.gene88116.t1 | MTR_3g101150 | 65.000 | 160 | 45 | 3 | 238 | 388 | 1 | 158 | 3.88e-62 | 197 |
MS.gene88116.t1 | MTR_3g101020 | 57.838 | 185 | 52 | 3 | 206 | 389 | 1 | 160 | 4.23e-62 | 197 |
MS.gene88116.t1 | MTR_3g102870 | 57.792 | 154 | 61 | 1 | 198 | 347 | 4 | 157 | 9.55e-53 | 173 |
MS.gene88116.t1 | MTR_3g111150 | 48.045 | 179 | 67 | 3 | 8 | 186 | 1 | 153 | 7.70e-48 | 160 |
MS.gene88116.t1 | MTR_3g100990 | 62.791 | 129 | 46 | 1 | 4 | 132 | 3 | 129 | 2.79e-42 | 155 |
MS.gene88116.t1 | MTR_3g101140 | 51.261 | 119 | 47 | 2 | 271 | 389 | 9 | 116 | 5.18e-28 | 107 |
MS.gene88116.t1 | MTR_4g093550 | 51.648 | 91 | 42 | 1 | 1 | 91 | 1 | 89 | 5.32e-20 | 84.3 |
MS.gene88116.t1 | MTR_6g046890 | 62.121 | 66 | 25 | 0 | 23 | 88 | 14 | 79 | 1.52e-17 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88116.t1 | AT1G47710 | 50.386 | 389 | 185 | 4 | 5 | 387 | 4 | 390 | 8.38e-133 | 386 |
MS.gene88116.t1 | AT1G47710 | 50.386 | 389 | 185 | 4 | 5 | 387 | 31 | 417 | 4.00e-132 | 385 |
MS.gene88116.t1 | AT3G45220 | 43.909 | 394 | 200 | 5 | 6 | 386 | 5 | 390 | 1.73e-111 | 332 |
MS.gene88116.t1 | AT2G25240 | 45.244 | 389 | 194 | 8 | 6 | 386 | 5 | 382 | 1.16e-108 | 324 |
MS.gene88116.t1 | AT2G26390 | 42.092 | 392 | 206 | 6 | 6 | 386 | 5 | 386 | 7.51e-101 | 305 |
MS.gene88116.t1 | AT1G62170 | 44.262 | 366 | 174 | 6 | 29 | 386 | 88 | 431 | 7.08e-97 | 296 |
MS.gene88116.t1 | AT1G64030 | 43.005 | 386 | 198 | 6 | 5 | 386 | 4 | 371 | 4.31e-96 | 292 |
MS.gene88116.t1 | AT2G14540 | 44.598 | 361 | 179 | 4 | 29 | 386 | 55 | 397 | 2.17e-93 | 286 |
MS.gene88116.t1 | AT1G62170 | 40.602 | 399 | 174 | 7 | 29 | 386 | 88 | 464 | 5.51e-90 | 279 |
MS.gene88116.t1 | AT2G35580 | 39.589 | 389 | 207 | 9 | 5 | 386 | 4 | 371 | 1.29e-85 | 265 |
MS.gene88116.t1 | AT1G64010 | 47.685 | 216 | 90 | 5 | 173 | 386 | 1 | 195 | 2.75e-62 | 199 |
MS.gene88116.t1 | AT1G64010 | 47.264 | 201 | 83 | 5 | 188 | 386 | 2 | 181 | 3.93e-55 | 180 |
MS.gene88116.t1 | AT1G62160 | 41.709 | 199 | 87 | 5 | 195 | 386 | 42 | 218 | 3.67e-34 | 126 |
MS.gene88116.t1 | AT1G63280 | 51.695 | 118 | 53 | 2 | 129 | 244 | 5 | 120 | 2.88e-33 | 120 |
MS.gene88116.t1 | AT1G51330 | 43.750 | 112 | 60 | 2 | 130 | 238 | 29 | 140 | 2.90e-25 | 102 |
Find 73 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTAATGCACTATACTTTAA+AGG | 0.155210 | 3.4:+45327298 | MS.gene88116:CDS |
CCACGTTTCAAAATTTATTC+TGG | 0.250552 | 3.4:+45327628 | MS.gene88116:CDS |
ATATCGTTGCCTTTCTTATA+AGG | 0.269460 | 3.4:-45327466 | None:intergenic |
TTCATTGAAGTAAATGAAAA+AGG | 0.281273 | 3.4:+45327766 | MS.gene88116:CDS |
AAATGGCGAACTCTCCGATT+TGG | 0.294557 | 3.4:+45327719 | MS.gene88116:CDS |
GGAAAAGAGGTGAGAGGATA+AGG | 0.329026 | 3.4:-45326921 | None:intergenic |
GGTCAGCTACAAAGTCTATT+GGG | 0.353199 | 3.4:-45327855 | None:intergenic |
AAGTGATAGTGGGTGACTTC+AGG | 0.357075 | 3.4:+45327602 | MS.gene88116:CDS |
AATGGCGAACTCTCCGATTT+GGG | 0.362900 | 3.4:+45327720 | MS.gene88116:CDS |
CTACTATGCTTAGCACAGTT+TGG | 0.367964 | 3.4:-45326823 | None:intergenic |
AGTATCAACAATTTCTTTGA+AGG | 0.389170 | 3.4:-45327035 | None:intergenic |
TCTAATGTGTCAAAGGAGTT+AGG | 0.389227 | 3.4:+45327661 | MS.gene88116:CDS |
CGTCAGCTTCTCTCCTTCCT+TGG | 0.391854 | 3.4:+45326872 | MS.gene88116:CDS |
ATTAGTGATGTTCTTTCACC+TGG | 0.400115 | 3.4:+45327244 | MS.gene88116:CDS |
TGGTCAGCTACAAAGTCTAT+TGG | 0.402096 | 3.4:-45327856 | None:intergenic |
TCTGGTACAATACTCTTTGT+TGG | 0.408824 | 3.4:+45327910 | MS.gene88116:CDS |
CTTCGTCTTCCTTATAAGAA+AGG | 0.420477 | 3.4:+45327457 | MS.gene88116:CDS |
GTTAGCTTTGATTGAGAAAG+TGG | 0.425057 | 3.4:+45327537 | MS.gene88116:CDS |
TCCACGTAAGGAAGTGATAG+TGG | 0.448188 | 3.4:+45327591 | MS.gene88116:CDS |
CAACAAGAGGATTGAGCACT+TGG | 0.450565 | 3.4:-45327933 | None:intergenic |
AGTTTGTGTTTCAAAATCTC+AGG | 0.451018 | 3.4:-45327568 | None:intergenic |
CAAGTGCTCAATCCTCTTGT+TGG | 0.453144 | 3.4:+45327934 | MS.gene88116:CDS |
TTGTGTCGGACCCTCGGAAC+CGG | 0.453396 | 3.4:-45326849 | None:intergenic |
GTCACTAGAACCGGACTATC+GGG | 0.467305 | 3.4:+45327805 | MS.gene88116:CDS |
TTGATAAGAGACGATTTGTC+TGG | 0.469705 | 3.4:+45327892 | MS.gene88116:CDS |
GCTGCTGCAGTCACTAGAAC+CGG | 0.471427 | 3.4:+45327796 | MS.gene88116:CDS |
CAACAATTTCTTTGAAGGAA+GGG | 0.472215 | 3.4:-45327030 | None:intergenic |
TTAAATTAGCGATTGATTCG+CGG | 0.473914 | 3.4:-45326715 | None:intergenic |
AACAATCCATCTCTTGCATC+GGG | 0.475826 | 3.4:-45327517 | None:intergenic |
GTCAAACCTCCATCAGAGAA+AGG | 0.475976 | 3.4:-45327694 | None:intergenic |
GTGTTTCAAAATCTCAGGTT+TGG | 0.477894 | 3.4:-45327563 | None:intergenic |
TCAACAATTTCTTTGAAGGA+AGG | 0.480156 | 3.4:-45327031 | None:intergenic |
TCTCGGTGGCAGCTCAATCA+AGG | 0.492253 | 3.4:+45327375 | MS.gene88116:CDS |
TGAAGGAAGGGTAAACAGAA+AGG | 0.497719 | 3.4:-45327018 | None:intergenic |
GAAGGAAGGGTAAACAGAAA+GGG | 0.500206 | 3.4:-45327017 | None:intergenic |
GAGAGGATAAGGAGTTGAGA+TGG | 0.502008 | 3.4:-45326910 | None:intergenic |
AGACAACTGTGGACCACCAT+AGG | 0.503886 | 3.4:-45326966 | None:intergenic |
TAAGGAGTTGAGATGGTCAA+TGG | 0.510048 | 3.4:-45326903 | None:intergenic |
TGAACTTTCTAATGTGTCAA+AGG | 0.513651 | 3.4:+45327654 | MS.gene88116:CDS |
ACGAGCACATCCCGATAGTC+CGG | 0.528493 | 3.4:-45327815 | None:intergenic |
AGTCACTAGAACCGGACTAT+CGG | 0.529335 | 3.4:+45327804 | MS.gene88116:CDS |
TAACAATCCATCTCTTGCAT+CGG | 0.531098 | 3.4:-45327518 | None:intergenic |
TTTCTTCCCGATGCAAGAGA+TGG | 0.534096 | 3.4:+45327511 | MS.gene88116:CDS |
GAAACACAAACTTCCACGTA+AGG | 0.535930 | 3.4:+45327579 | MS.gene88116:CDS |
CTAGACGACGCTGCTCCCTA+TGG | 0.544397 | 3.4:+45326950 | MS.gene88116:CDS |
CATAGTAGCTGCCGGTTCCG+AGG | 0.550280 | 3.4:+45326838 | MS.gene88116:CDS |
AATATGTTAGAAACCCAAAT+CGG | 0.552609 | 3.4:-45327733 | None:intergenic |
CTGACGTTGTGTCGGACCCT+CGG | 0.555565 | 3.4:-45326855 | None:intergenic |
CGTCTAGCACAGAGGAAAAG+AGG | 0.559719 | 3.4:-45326934 | None:intergenic |
ATAGTAGCTGCCGGTTCCGA+GGG | 0.565910 | 3.4:+45326839 | MS.gene88116:CDS |
CCCACTATCACTTCCTTACG+TGG | 0.567927 | 3.4:-45327592 | None:intergenic |
CACTATACTTTAAAGGAGCA+TGG | 0.570932 | 3.4:+45327305 | MS.gene88116:CDS |
ATTGGGGTCGGAATTGAAGT+AGG | 0.576372 | 3.4:-45327838 | None:intergenic |
GTGCTAAGCATAGTAGCTGC+CGG | 0.576729 | 3.4:+45326830 | MS.gene88116:CDS |
TGATTGAGCTGCCACCGAGA+AGG | 0.604903 | 3.4:-45327372 | None:intergenic |
GACAACTGTGGACCACCATA+GGG | 0.607442 | 3.4:-45326965 | None:intergenic |
GCTACAAAGTCTATTGGGGT+CGG | 0.608267 | 3.4:-45327850 | None:intergenic |
CTTTCTTATAAGGAAGACGA+AGG | 0.614295 | 3.4:-45327456 | None:intergenic |
GAGAGAAGCTGACGTTGTGT+CGG | 0.614776 | 3.4:-45326863 | None:intergenic |
AGCACAGTTTGGAGTGACAA+CGG | 0.616387 | 3.4:-45326812 | None:intergenic |
ATCACTTGATTTCATAAACA+AGG | 0.616736 | 3.4:+45327078 | MS.gene88116:CDS |
GTTAAGCTATTAATTGACCC+AGG | 0.618787 | 3.4:-45327262 | None:intergenic |
AGCAGCGTCGTCTAGCACAG+AGG | 0.630122 | 3.4:-45326942 | None:intergenic |
CACAGAGGAAAAGAGGTGAG+AGG | 0.632829 | 3.4:-45326927 | None:intergenic |
CCACGTAAGGAAGTGATAGT+GGG | 0.633032 | 3.4:+45327592 | MS.gene88116:CDS |
TTAGTGATGTTCTTTCACCT+GGG | 0.638192 | 3.4:+45327245 | MS.gene88116:CDS |
GAAATCAAGTGATCTGAGAG+TGG | 0.639757 | 3.4:-45327068 | None:intergenic |
GACGACGCTGCTCCCTATGG+TGG | 0.640142 | 3.4:+45326953 | MS.gene88116:CDS |
CACCGAGAAGGTGAAAATCA+CGG | 0.643065 | 3.4:-45327360 | None:intergenic |
GTCAGCTACAAAGTCTATTG+GGG | 0.647256 | 3.4:-45327854 | None:intergenic |
AATTATGATCTACCAACAAG+AGG | 0.656976 | 3.4:-45327946 | None:intergenic |
AATTAGCGATTGATTCGCGG+TGG | 0.680650 | 3.4:-45326712 | None:intergenic |
GAGTTGACAAAAGACAACTG+TGG | 0.761019 | 3.4:-45326977 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAAGGAAAATATATAT+AGG | - | chr3.4:45327106-45327125 | None:intergenic | 15.0% |
!! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.4:45327766-45327785 | MS.gene88116:CDS | 20.0% |
!!! | TTTACTGTTCTAAAAAAAGA+AGG | - | chr3.4:45327120-45327139 | None:intergenic | 20.0% |
! | AATATGTTAGAAACCCAAAT+CGG | - | chr3.4:45327736-45327755 | None:intergenic | 25.0% |
! | AGTATCAACAATTTCTTTGA+AGG | - | chr3.4:45327038-45327057 | None:intergenic | 25.0% |
! | ATCACTTGATTTCATAAACA+AGG | + | chr3.4:45327078-45327097 | MS.gene88116:CDS | 25.0% |
!! | CAGTTTATAAATGCTTTTGA+TGG | + | chr3.4:45327424-45327443 | MS.gene88116:CDS | 25.0% |
!!! | TGTTTTTGATAGCAAATGTT+TGG | - | chr3.4:45326762-45326781 | None:intergenic | 25.0% |
!!! | TTTGTTTTTGAAGCATCAAA+TGG | - | chr3.4:45327337-45327356 | None:intergenic | 25.0% |
AGTTTGTGTTTCAAAATCTC+AGG | - | chr3.4:45327571-45327590 | None:intergenic | 30.0% | |
ATATCGTTGCCTTTCTTATA+AGG | - | chr3.4:45327469-45327488 | None:intergenic | 30.0% | |
CCACGTTTCAAAATTTATTC+TGG | + | chr3.4:45327628-45327647 | MS.gene88116:CDS | 30.0% | |
CGTCAAAAAAGTGAATGTAT+GGG | + | chr3.4:45327198-45327217 | MS.gene88116:CDS | 30.0% | |
CTCTTATCAAAAACGTGAAA+GGG | - | chr3.4:45327882-45327901 | None:intergenic | 30.0% | |
GCTAATGCACTATACTTTAA+AGG | + | chr3.4:45327298-45327317 | MS.gene88116:CDS | 30.0% | |
TCTCTTATCAAAAACGTGAA+AGG | - | chr3.4:45327883-45327902 | None:intergenic | 30.0% | |
TGAACTTTCTAATGTGTCAA+AGG | + | chr3.4:45327654-45327673 | MS.gene88116:CDS | 30.0% | |
! | CAACAATTTCTTTGAAGGAA+GGG | - | chr3.4:45327033-45327052 | None:intergenic | 30.0% |
! | TATATTTGTTGCTGTCGTAA+AGG | + | chr3.4:45327165-45327184 | MS.gene88116:intron | 30.0% |
! | TCAACAATTTCTTTGAAGGA+AGG | - | chr3.4:45327034-45327053 | None:intergenic | 30.0% |
! | TTCTTTTTGCTAGTCATGAA+GGG | - | chr3.4:45327403-45327422 | None:intergenic | 30.0% |
!! | TTAAATTAGCGATTGATTCG+CGG | - | chr3.4:45326718-45326737 | None:intergenic | 30.0% |
!!! | CCAGAATAAATTTTGAAACG+TGG | - | chr3.4:45327631-45327650 | None:intergenic | 30.0% |
!!! | CCATACATTCACTTTTTTGA+CGG | - | chr3.4:45327200-45327219 | None:intergenic | 30.0% |
ATTAGTGATGTTCTTTCACC+TGG | + | chr3.4:45327244-45327263 | MS.gene88116:CDS | 35.0% | |
CCGTCAAAAAAGTGAATGTA+TGG | + | chr3.4:45327197-45327216 | MS.gene88116:CDS | 35.0% | |
CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.4:45327457-45327476 | MS.gene88116:CDS | 35.0% | |
CTTTCTTATAAGGAAGACGA+AGG | - | chr3.4:45327459-45327478 | None:intergenic | 35.0% | |
GTGTTTCAAAATCTCAGGTT+TGG | - | chr3.4:45327566-45327585 | None:intergenic | 35.0% | |
GTTAAGCTATTAATTGACCC+AGG | - | chr3.4:45327265-45327284 | None:intergenic | 35.0% | |
TAACAATCCATCTCTTGCAT+CGG | - | chr3.4:45327521-45327540 | None:intergenic | 35.0% | |
TCTAATGTGTCAAAGGAGTT+AGG | + | chr3.4:45327661-45327680 | MS.gene88116:CDS | 35.0% | |
TCTGGTACAATACTCTTTGT+TGG | + | chr3.4:45327910-45327929 | MS.gene88116:CDS | 35.0% | |
TGATGGAGGTTTGACAAAAA+TGG | + | chr3.4:45327702-45327721 | MS.gene88116:CDS | 35.0% | |
TGGGCTAAAAAAGAGACAAA+CGG | + | chr3.4:45327217-45327236 | MS.gene88116:CDS | 35.0% | |
TTAGTGATGTTCTTTCACCT+GGG | + | chr3.4:45327245-45327264 | MS.gene88116:CDS | 35.0% | |
TTATCAAAAACGTGAAAGGG+TGG | - | chr3.4:45327879-45327898 | None:intergenic | 35.0% | |
TTGATAAGAGACGATTTGTC+TGG | + | chr3.4:45327892-45327911 | MS.gene88116:CDS | 35.0% | |
! | CACTATACTTTAAAGGAGCA+TGG | + | chr3.4:45327305-45327324 | MS.gene88116:CDS | 35.0% |
! | CTTCTTTTTGCTAGTCATGA+AGG | - | chr3.4:45327404-45327423 | None:intergenic | 35.0% |
! | TGTCTTTTGTCAACTCTGTT+TGG | + | chr3.4:45326984-45327003 | MS.gene88116:CDS | 35.0% |
!! | AATGGATTTTGATCCAAGGA+AGG | - | chr3.4:45326888-45326907 | None:intergenic | 35.0% |
!! | GTTAGCTTTGATTGAGAAAG+TGG | + | chr3.4:45327537-45327556 | MS.gene88116:CDS | 35.0% |
!! | GTTGTTTTACCTTTCTCTGA+TGG | + | chr3.4:45327685-45327704 | MS.gene88116:CDS | 35.0% |
AACAATCCATCTCTTGCATC+GGG | - | chr3.4:45327520-45327539 | None:intergenic | 40.0% | |
CTACTATGCTTAGCACAGTT+TGG | - | chr3.4:45326826-45326845 | None:intergenic | 40.0% | |
GAAACACAAACTTCCACGTA+AGG | + | chr3.4:45327579-45327598 | MS.gene88116:CDS | 40.0% | |
GAAATCAAGTGATCTGAGAG+TGG | - | chr3.4:45327071-45327090 | None:intergenic | 40.0% | |
GAAGGAAGGGTAAACAGAAA+GGG | - | chr3.4:45327020-45327039 | None:intergenic | 40.0% | |
GAGTTGACAAAAGACAACTG+TGG | - | chr3.4:45326980-45326999 | None:intergenic | 40.0% | |
GGTCAGCTACAAAGTCTATT+GGG | - | chr3.4:45327858-45327877 | None:intergenic | 40.0% | |
GTCAGCTACAAAGTCTATTG+GGG | - | chr3.4:45327857-45327876 | None:intergenic | 40.0% | |
TAAGGAGTTGAGATGGTCAA+TGG | - | chr3.4:45326906-45326925 | None:intergenic | 40.0% | |
TGAAGGAAGGGTAAACAGAA+AGG | - | chr3.4:45327021-45327040 | None:intergenic | 40.0% | |
TGGTCAGCTACAAAGTCTAT+TGG | - | chr3.4:45327859-45327878 | None:intergenic | 40.0% | |
! | GTTTTACCTTTCTCTGATGG+AGG | + | chr3.4:45327688-45327707 | MS.gene88116:CDS | 40.0% |
!! | GGTCAATGGATTTTGATCCA+AGG | - | chr3.4:45326892-45326911 | None:intergenic | 40.0% |
AAATGGCGAACTCTCCGATT+TGG | + | chr3.4:45327719-45327738 | MS.gene88116:CDS | 45.0% | |
AATGGCGAACTCTCCGATTT+GGG | + | chr3.4:45327720-45327739 | MS.gene88116:CDS | 45.0% | |
AGTCACTAGAACCGGACTAT+CGG | + | chr3.4:45327804-45327823 | MS.gene88116:CDS | 45.0% | |
ATTGGGGTCGGAATTGAAGT+AGG | - | chr3.4:45327841-45327860 | None:intergenic | 45.0% | |
CAACAAGAGGATTGAGCACT+TGG | - | chr3.4:45327936-45327955 | None:intergenic | 45.0% | |
CAAGTGCTCAATCCTCTTGT+TGG | + | chr3.4:45327934-45327953 | MS.gene88116:CDS | 45.0% | |
CACCGAGAAGGTGAAAATCA+CGG | - | chr3.4:45327363-45327382 | None:intergenic | 45.0% | |
CCACGTAAGGAAGTGATAGT+GGG | + | chr3.4:45327592-45327611 | MS.gene88116:CDS | 45.0% | |
GAGAGGATAAGGAGTTGAGA+TGG | - | chr3.4:45326913-45326932 | None:intergenic | 45.0% | |
GCTACAAAGTCTATTGGGGT+CGG | - | chr3.4:45327853-45327872 | None:intergenic | 45.0% | |
GGAAAAGAGGTGAGAGGATA+AGG | - | chr3.4:45326924-45326943 | None:intergenic | 45.0% | |
GTCAAACCTCCATCAGAGAA+AGG | - | chr3.4:45327697-45327716 | None:intergenic | 45.0% | |
TCCACGTAAGGAAGTGATAG+TGG | + | chr3.4:45327591-45327610 | MS.gene88116:CDS | 45.0% | |
TTTCTTCCCGATGCAAGAGA+TGG | + | chr3.4:45327511-45327530 | MS.gene88116:CDS | 45.0% | |
! | AGCACAGTTTGGAGTGACAA+CGG | - | chr3.4:45326815-45326834 | None:intergenic | 45.0% |
! | GACCGTGATTTTCACCTTCT+CGG | + | chr3.4:45327358-45327377 | MS.gene88116:CDS | 45.0% |
!! | AAGTGATAGTGGGTGACTTC+AGG | + | chr3.4:45327602-45327621 | MS.gene88116:CDS | 45.0% |
!! | AATTAGCGATTGATTCGCGG+TGG | - | chr3.4:45326715-45326734 | None:intergenic | 45.0% |
AGACAACTGTGGACCACCAT+AGG | - | chr3.4:45326969-45326988 | None:intergenic | 50.0% | |
CACAGAGGAAAAGAGGTGAG+AGG | - | chr3.4:45326930-45326949 | None:intergenic | 50.0% | |
CCCACTATCACTTCCTTACG+TGG | - | chr3.4:45327595-45327614 | None:intergenic | 50.0% | |
CGTCTAGCACAGAGGAAAAG+AGG | - | chr3.4:45326937-45326956 | None:intergenic | 50.0% | |
GACAACTGTGGACCACCATA+GGG | - | chr3.4:45326968-45326987 | None:intergenic | 50.0% | |
GAGAGAAGCTGACGTTGTGT+CGG | - | chr3.4:45326866-45326885 | None:intergenic | 50.0% | |
GTCACTAGAACCGGACTATC+GGG | + | chr3.4:45327805-45327824 | MS.gene88116:CDS | 50.0% | |
GTGCTAAGCATAGTAGCTGC+CGG | + | chr3.4:45326830-45326849 | MS.gene88116:CDS | 50.0% | |
! | CGTGATTTTCACCTTCTCGG+TGG | + | chr3.4:45327361-45327380 | MS.gene88116:CDS | 50.0% |
ACGAGCACATCCCGATAGTC+CGG | - | chr3.4:45327818-45327837 | None:intergenic | 55.0% | |
CGTCAGCTTCTCTCCTTCCT+TGG | + | chr3.4:45326872-45326891 | MS.gene88116:CDS | 55.0% | |
GCTGCTGCAGTCACTAGAAC+CGG | + | chr3.4:45327796-45327815 | MS.gene88116:CDS | 55.0% | |
TCTCGGTGGCAGCTCAATCA+AGG | + | chr3.4:45327375-45327394 | MS.gene88116:CDS | 55.0% | |
TGATTGAGCTGCCACCGAGA+AGG | - | chr3.4:45327375-45327394 | None:intergenic | 55.0% | |
!! | ATAGTAGCTGCCGGTTCCGA+GGG | + | chr3.4:45326839-45326858 | MS.gene88116:CDS | 55.0% |
AGCAGCGTCGTCTAGCACAG+AGG | - | chr3.4:45326945-45326964 | None:intergenic | 60.0% | |
CTAGACGACGCTGCTCCCTA+TGG | + | chr3.4:45326950-45326969 | MS.gene88116:CDS | 60.0% | |
CTGACGTTGTGTCGGACCCT+CGG | - | chr3.4:45326858-45326877 | None:intergenic | 60.0% | |
TTGTGTCGGACCCTCGGAAC+CGG | - | chr3.4:45326852-45326871 | None:intergenic | 60.0% | |
!! | CATAGTAGCTGCCGGTTCCG+AGG | + | chr3.4:45326838-45326857 | MS.gene88116:CDS | 60.0% |
GACGACGCTGCTCCCTATGG+TGG | + | chr3.4:45326953-45326972 | MS.gene88116:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 45326704 | 45327966 | 45326704 | ID=MS.gene88116 |
chr3.4 | mRNA | 45326704 | 45327966 | 45326704 | ID=MS.gene88116.t1;Parent=MS.gene88116 |
chr3.4 | exon | 45326704 | 45327099 | 45326704 | ID=MS.gene88116.t1.exon1;Parent=MS.gene88116.t1 |
chr3.4 | CDS | 45326704 | 45327099 | 45326704 | ID=cds.MS.gene88116.t1;Parent=MS.gene88116.t1 |
chr3.4 | exon | 45327187 | 45327966 | 45327187 | ID=MS.gene88116.t1.exon2;Parent=MS.gene88116.t1 |
chr3.4 | CDS | 45327187 | 45327966 | 45327187 | ID=cds.MS.gene88116.t1;Parent=MS.gene88116.t1 |
Gene Sequence |
Protein sequence |