AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88116


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88116.t1 MTR_3g101130 94.885 391 20 0 1 391 1 391 0.0 758
MS.gene88116.t1 MTR_3g101180 65.414 399 127 4 1 388 1 399 8.43e-179 503
MS.gene88116.t1 MTR_7g050750 64.359 390 134 2 5 389 7 396 2.83e-174 491
MS.gene88116.t1 MTR_8g461160 63.776 392 137 2 1 387 1 392 1.33e-173 489
MS.gene88116.t1 MTR_3g101010 64.010 389 133 3 5 389 4 389 9.77e-168 474
MS.gene88116.t1 MTR_7g050810 63.077 390 137 3 6 389 16 404 1.48e-167 475
MS.gene88116.t1 MTR_3g101200 64.103 390 114 4 1 388 26 391 2.72e-167 474
MS.gene88116.t1 MTR_3g018740 62.595 393 134 5 1 387 1 386 4.44e-165 468
MS.gene88116.t1 MTR_7g451890 61.183 389 146 2 6 389 14 402 2.61e-163 464
MS.gene88116.t1 MTR_7g047780 60.668 389 148 2 6 389 14 402 7.46e-162 460
MS.gene88116.t1 MTR_4g045707 60.406 394 145 4 1 389 1 388 6.50e-161 457
MS.gene88116.t1 MTR_8g027395 60.560 393 144 3 1 389 12 397 1.06e-159 454
MS.gene88116.t1 MTR_4g088525 63.085 363 125 3 30 388 11 368 4.91e-155 441
MS.gene88116.t1 MTR_3g101030 58.524 393 144 3 15 389 38 429 5.20e-155 444
MS.gene88116.t1 MTR_8g027420 58.779 393 140 4 1 389 1 375 1.48e-152 436
MS.gene88116.t1 MTR_2g046030 57.653 392 148 7 5 387 4 386 2.40e-147 423
MS.gene88116.t1 MTR_2g045980 57.143 392 150 6 5 387 4 386 1.59e-146 421
MS.gene88116.t1 MTR_3g048000 57.584 389 133 6 7 388 28 391 5.42e-146 419
MS.gene88116.t1 MTR_4g088535 55.980 393 145 6 1 388 1 370 1.72e-138 400
MS.gene88116.t1 MTR_3g101050 56.072 387 145 7 7 387 29 396 7.21e-136 394
MS.gene88116.t1 MTR_3g015620 55.784 389 139 6 6 387 16 378 1.52e-131 382
MS.gene88116.t1 MTR_3g102920 54.430 395 135 6 1 388 53 409 1.10e-129 379
MS.gene88116.t1 MTR_3g101190 52.342 363 105 4 31 389 14 312 1.71e-116 342
MS.gene88116.t1 MTR_3g100995 65.354 254 82 3 139 389 14 264 4.35e-114 333
MS.gene88116.t1 MTR_7g050830 54.459 314 112 2 6 299 16 318 4.75e-108 320
MS.gene88116.t1 MTR_3g015760 62.692 260 90 4 132 387 23 279 1.23e-98 295
MS.gene88116.t1 MTR_3g100010 49.051 316 113 3 31 313 40 340 4.67e-98 296
MS.gene88116.t1 MTR_3g018747 57.854 261 89 3 132 387 9 253 4.30e-96 287
MS.gene88116.t1 MTR_3g114310 41.995 381 196 10 28 389 36 410 1.18e-82 259
MS.gene88116.t1 MTR_3g111160 62.326 215 73 2 180 389 9 220 3.17e-82 251
MS.gene88116.t1 MTR_3g100520 57.399 223 75 3 173 389 1 209 1.11e-81 249
MS.gene88116.t1 MTR_3g101110 53.942 241 76 4 135 367 71 284 7.71e-76 237
MS.gene88116.t1 MTR_3g099970 59.487 195 60 2 132 323 20 198 1.67e-74 230
MS.gene88116.t1 MTR_2g046410 59.615 208 71 4 189 387 144 347 2.86e-74 235
MS.gene88116.t1 MTR_3g101150 65.000 160 45 3 238 388 1 158 3.88e-62 197
MS.gene88116.t1 MTR_3g101020 57.838 185 52 3 206 389 1 160 4.23e-62 197
MS.gene88116.t1 MTR_3g102870 57.792 154 61 1 198 347 4 157 9.55e-53 173
MS.gene88116.t1 MTR_3g111150 48.045 179 67 3 8 186 1 153 7.70e-48 160
MS.gene88116.t1 MTR_3g100990 62.791 129 46 1 4 132 3 129 2.79e-42 155
MS.gene88116.t1 MTR_3g101140 51.261 119 47 2 271 389 9 116 5.18e-28 107
MS.gene88116.t1 MTR_4g093550 51.648 91 42 1 1 91 1 89 5.32e-20 84.3
MS.gene88116.t1 MTR_6g046890 62.121 66 25 0 23 88 14 79 1.52e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88116.t1 AT1G47710 50.386 389 185 4 5 387 4 390 8.38e-133 386
MS.gene88116.t1 AT1G47710 50.386 389 185 4 5 387 31 417 4.00e-132 385
MS.gene88116.t1 AT3G45220 43.909 394 200 5 6 386 5 390 1.73e-111 332
MS.gene88116.t1 AT2G25240 45.244 389 194 8 6 386 5 382 1.16e-108 324
MS.gene88116.t1 AT2G26390 42.092 392 206 6 6 386 5 386 7.51e-101 305
MS.gene88116.t1 AT1G62170 44.262 366 174 6 29 386 88 431 7.08e-97 296
MS.gene88116.t1 AT1G64030 43.005 386 198 6 5 386 4 371 4.31e-96 292
MS.gene88116.t1 AT2G14540 44.598 361 179 4 29 386 55 397 2.17e-93 286
MS.gene88116.t1 AT1G62170 40.602 399 174 7 29 386 88 464 5.51e-90 279
MS.gene88116.t1 AT2G35580 39.589 389 207 9 5 386 4 371 1.29e-85 265
MS.gene88116.t1 AT1G64010 47.685 216 90 5 173 386 1 195 2.75e-62 199
MS.gene88116.t1 AT1G64010 47.264 201 83 5 188 386 2 181 3.93e-55 180
MS.gene88116.t1 AT1G62160 41.709 199 87 5 195 386 42 218 3.67e-34 126
MS.gene88116.t1 AT1G63280 51.695 118 53 2 129 244 5 120 2.88e-33 120
MS.gene88116.t1 AT1G51330 43.750 112 60 2 130 238 29 140 2.90e-25 102

Find 73 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCACTATACTTTAA+AGG 0.155210 3.4:+45327298 MS.gene88116:CDS
CCACGTTTCAAAATTTATTC+TGG 0.250552 3.4:+45327628 MS.gene88116:CDS
ATATCGTTGCCTTTCTTATA+AGG 0.269460 3.4:-45327466 None:intergenic
TTCATTGAAGTAAATGAAAA+AGG 0.281273 3.4:+45327766 MS.gene88116:CDS
AAATGGCGAACTCTCCGATT+TGG 0.294557 3.4:+45327719 MS.gene88116:CDS
GGAAAAGAGGTGAGAGGATA+AGG 0.329026 3.4:-45326921 None:intergenic
GGTCAGCTACAAAGTCTATT+GGG 0.353199 3.4:-45327855 None:intergenic
AAGTGATAGTGGGTGACTTC+AGG 0.357075 3.4:+45327602 MS.gene88116:CDS
AATGGCGAACTCTCCGATTT+GGG 0.362900 3.4:+45327720 MS.gene88116:CDS
CTACTATGCTTAGCACAGTT+TGG 0.367964 3.4:-45326823 None:intergenic
AGTATCAACAATTTCTTTGA+AGG 0.389170 3.4:-45327035 None:intergenic
TCTAATGTGTCAAAGGAGTT+AGG 0.389227 3.4:+45327661 MS.gene88116:CDS
CGTCAGCTTCTCTCCTTCCT+TGG 0.391854 3.4:+45326872 MS.gene88116:CDS
ATTAGTGATGTTCTTTCACC+TGG 0.400115 3.4:+45327244 MS.gene88116:CDS
TGGTCAGCTACAAAGTCTAT+TGG 0.402096 3.4:-45327856 None:intergenic
TCTGGTACAATACTCTTTGT+TGG 0.408824 3.4:+45327910 MS.gene88116:CDS
CTTCGTCTTCCTTATAAGAA+AGG 0.420477 3.4:+45327457 MS.gene88116:CDS
GTTAGCTTTGATTGAGAAAG+TGG 0.425057 3.4:+45327537 MS.gene88116:CDS
TCCACGTAAGGAAGTGATAG+TGG 0.448188 3.4:+45327591 MS.gene88116:CDS
CAACAAGAGGATTGAGCACT+TGG 0.450565 3.4:-45327933 None:intergenic
AGTTTGTGTTTCAAAATCTC+AGG 0.451018 3.4:-45327568 None:intergenic
CAAGTGCTCAATCCTCTTGT+TGG 0.453144 3.4:+45327934 MS.gene88116:CDS
TTGTGTCGGACCCTCGGAAC+CGG 0.453396 3.4:-45326849 None:intergenic
GTCACTAGAACCGGACTATC+GGG 0.467305 3.4:+45327805 MS.gene88116:CDS
TTGATAAGAGACGATTTGTC+TGG 0.469705 3.4:+45327892 MS.gene88116:CDS
GCTGCTGCAGTCACTAGAAC+CGG 0.471427 3.4:+45327796 MS.gene88116:CDS
CAACAATTTCTTTGAAGGAA+GGG 0.472215 3.4:-45327030 None:intergenic
TTAAATTAGCGATTGATTCG+CGG 0.473914 3.4:-45326715 None:intergenic
AACAATCCATCTCTTGCATC+GGG 0.475826 3.4:-45327517 None:intergenic
GTCAAACCTCCATCAGAGAA+AGG 0.475976 3.4:-45327694 None:intergenic
GTGTTTCAAAATCTCAGGTT+TGG 0.477894 3.4:-45327563 None:intergenic
TCAACAATTTCTTTGAAGGA+AGG 0.480156 3.4:-45327031 None:intergenic
TCTCGGTGGCAGCTCAATCA+AGG 0.492253 3.4:+45327375 MS.gene88116:CDS
TGAAGGAAGGGTAAACAGAA+AGG 0.497719 3.4:-45327018 None:intergenic
GAAGGAAGGGTAAACAGAAA+GGG 0.500206 3.4:-45327017 None:intergenic
GAGAGGATAAGGAGTTGAGA+TGG 0.502008 3.4:-45326910 None:intergenic
AGACAACTGTGGACCACCAT+AGG 0.503886 3.4:-45326966 None:intergenic
TAAGGAGTTGAGATGGTCAA+TGG 0.510048 3.4:-45326903 None:intergenic
TGAACTTTCTAATGTGTCAA+AGG 0.513651 3.4:+45327654 MS.gene88116:CDS
ACGAGCACATCCCGATAGTC+CGG 0.528493 3.4:-45327815 None:intergenic
AGTCACTAGAACCGGACTAT+CGG 0.529335 3.4:+45327804 MS.gene88116:CDS
TAACAATCCATCTCTTGCAT+CGG 0.531098 3.4:-45327518 None:intergenic
TTTCTTCCCGATGCAAGAGA+TGG 0.534096 3.4:+45327511 MS.gene88116:CDS
GAAACACAAACTTCCACGTA+AGG 0.535930 3.4:+45327579 MS.gene88116:CDS
CTAGACGACGCTGCTCCCTA+TGG 0.544397 3.4:+45326950 MS.gene88116:CDS
CATAGTAGCTGCCGGTTCCG+AGG 0.550280 3.4:+45326838 MS.gene88116:CDS
AATATGTTAGAAACCCAAAT+CGG 0.552609 3.4:-45327733 None:intergenic
CTGACGTTGTGTCGGACCCT+CGG 0.555565 3.4:-45326855 None:intergenic
CGTCTAGCACAGAGGAAAAG+AGG 0.559719 3.4:-45326934 None:intergenic
ATAGTAGCTGCCGGTTCCGA+GGG 0.565910 3.4:+45326839 MS.gene88116:CDS
CCCACTATCACTTCCTTACG+TGG 0.567927 3.4:-45327592 None:intergenic
CACTATACTTTAAAGGAGCA+TGG 0.570932 3.4:+45327305 MS.gene88116:CDS
ATTGGGGTCGGAATTGAAGT+AGG 0.576372 3.4:-45327838 None:intergenic
GTGCTAAGCATAGTAGCTGC+CGG 0.576729 3.4:+45326830 MS.gene88116:CDS
TGATTGAGCTGCCACCGAGA+AGG 0.604903 3.4:-45327372 None:intergenic
GACAACTGTGGACCACCATA+GGG 0.607442 3.4:-45326965 None:intergenic
GCTACAAAGTCTATTGGGGT+CGG 0.608267 3.4:-45327850 None:intergenic
CTTTCTTATAAGGAAGACGA+AGG 0.614295 3.4:-45327456 None:intergenic
GAGAGAAGCTGACGTTGTGT+CGG 0.614776 3.4:-45326863 None:intergenic
AGCACAGTTTGGAGTGACAA+CGG 0.616387 3.4:-45326812 None:intergenic
ATCACTTGATTTCATAAACA+AGG 0.616736 3.4:+45327078 MS.gene88116:CDS
GTTAAGCTATTAATTGACCC+AGG 0.618787 3.4:-45327262 None:intergenic
AGCAGCGTCGTCTAGCACAG+AGG 0.630122 3.4:-45326942 None:intergenic
CACAGAGGAAAAGAGGTGAG+AGG 0.632829 3.4:-45326927 None:intergenic
CCACGTAAGGAAGTGATAGT+GGG 0.633032 3.4:+45327592 MS.gene88116:CDS
TTAGTGATGTTCTTTCACCT+GGG 0.638192 3.4:+45327245 MS.gene88116:CDS
GAAATCAAGTGATCTGAGAG+TGG 0.639757 3.4:-45327068 None:intergenic
GACGACGCTGCTCCCTATGG+TGG 0.640142 3.4:+45326953 MS.gene88116:CDS
CACCGAGAAGGTGAAAATCA+CGG 0.643065 3.4:-45327360 None:intergenic
GTCAGCTACAAAGTCTATTG+GGG 0.647256 3.4:-45327854 None:intergenic
AATTATGATCTACCAACAAG+AGG 0.656976 3.4:-45327946 None:intergenic
AATTAGCGATTGATTCGCGG+TGG 0.680650 3.4:-45326712 None:intergenic
GAGTTGACAAAAGACAACTG+TGG 0.761019 3.4:-45326977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAGGAAAATATATAT+AGG - chr3.4:45327106-45327125 None:intergenic 15.0%
!! TTCATTGAAGTAAATGAAAA+AGG + chr3.4:45327766-45327785 MS.gene88116:CDS 20.0%
!!! TTTACTGTTCTAAAAAAAGA+AGG - chr3.4:45327120-45327139 None:intergenic 20.0%
! AATATGTTAGAAACCCAAAT+CGG - chr3.4:45327736-45327755 None:intergenic 25.0%
! AGTATCAACAATTTCTTTGA+AGG - chr3.4:45327038-45327057 None:intergenic 25.0%
! ATCACTTGATTTCATAAACA+AGG + chr3.4:45327078-45327097 MS.gene88116:CDS 25.0%
!! CAGTTTATAAATGCTTTTGA+TGG + chr3.4:45327424-45327443 MS.gene88116:CDS 25.0%
!!! TGTTTTTGATAGCAAATGTT+TGG - chr3.4:45326762-45326781 None:intergenic 25.0%
!!! TTTGTTTTTGAAGCATCAAA+TGG - chr3.4:45327337-45327356 None:intergenic 25.0%
AGTTTGTGTTTCAAAATCTC+AGG - chr3.4:45327571-45327590 None:intergenic 30.0%
ATATCGTTGCCTTTCTTATA+AGG - chr3.4:45327469-45327488 None:intergenic 30.0%
CCACGTTTCAAAATTTATTC+TGG + chr3.4:45327628-45327647 MS.gene88116:CDS 30.0%
CGTCAAAAAAGTGAATGTAT+GGG + chr3.4:45327198-45327217 MS.gene88116:CDS 30.0%
CTCTTATCAAAAACGTGAAA+GGG - chr3.4:45327882-45327901 None:intergenic 30.0%
GCTAATGCACTATACTTTAA+AGG + chr3.4:45327298-45327317 MS.gene88116:CDS 30.0%
TCTCTTATCAAAAACGTGAA+AGG - chr3.4:45327883-45327902 None:intergenic 30.0%
TGAACTTTCTAATGTGTCAA+AGG + chr3.4:45327654-45327673 MS.gene88116:CDS 30.0%
! CAACAATTTCTTTGAAGGAA+GGG - chr3.4:45327033-45327052 None:intergenic 30.0%
! TATATTTGTTGCTGTCGTAA+AGG + chr3.4:45327165-45327184 MS.gene88116:intron 30.0%
! TCAACAATTTCTTTGAAGGA+AGG - chr3.4:45327034-45327053 None:intergenic 30.0%
! TTCTTTTTGCTAGTCATGAA+GGG - chr3.4:45327403-45327422 None:intergenic 30.0%
!! TTAAATTAGCGATTGATTCG+CGG - chr3.4:45326718-45326737 None:intergenic 30.0%
!!! CCAGAATAAATTTTGAAACG+TGG - chr3.4:45327631-45327650 None:intergenic 30.0%
!!! CCATACATTCACTTTTTTGA+CGG - chr3.4:45327200-45327219 None:intergenic 30.0%
ATTAGTGATGTTCTTTCACC+TGG + chr3.4:45327244-45327263 MS.gene88116:CDS 35.0%
CCGTCAAAAAAGTGAATGTA+TGG + chr3.4:45327197-45327216 MS.gene88116:CDS 35.0%
CTTCGTCTTCCTTATAAGAA+AGG + chr3.4:45327457-45327476 MS.gene88116:CDS 35.0%
CTTTCTTATAAGGAAGACGA+AGG - chr3.4:45327459-45327478 None:intergenic 35.0%
GTGTTTCAAAATCTCAGGTT+TGG - chr3.4:45327566-45327585 None:intergenic 35.0%
GTTAAGCTATTAATTGACCC+AGG - chr3.4:45327265-45327284 None:intergenic 35.0%
TAACAATCCATCTCTTGCAT+CGG - chr3.4:45327521-45327540 None:intergenic 35.0%
TCTAATGTGTCAAAGGAGTT+AGG + chr3.4:45327661-45327680 MS.gene88116:CDS 35.0%
TCTGGTACAATACTCTTTGT+TGG + chr3.4:45327910-45327929 MS.gene88116:CDS 35.0%
TGATGGAGGTTTGACAAAAA+TGG + chr3.4:45327702-45327721 MS.gene88116:CDS 35.0%
TGGGCTAAAAAAGAGACAAA+CGG + chr3.4:45327217-45327236 MS.gene88116:CDS 35.0%
TTAGTGATGTTCTTTCACCT+GGG + chr3.4:45327245-45327264 MS.gene88116:CDS 35.0%
TTATCAAAAACGTGAAAGGG+TGG - chr3.4:45327879-45327898 None:intergenic 35.0%
TTGATAAGAGACGATTTGTC+TGG + chr3.4:45327892-45327911 MS.gene88116:CDS 35.0%
! CACTATACTTTAAAGGAGCA+TGG + chr3.4:45327305-45327324 MS.gene88116:CDS 35.0%
! CTTCTTTTTGCTAGTCATGA+AGG - chr3.4:45327404-45327423 None:intergenic 35.0%
! TGTCTTTTGTCAACTCTGTT+TGG + chr3.4:45326984-45327003 MS.gene88116:CDS 35.0%
!! AATGGATTTTGATCCAAGGA+AGG - chr3.4:45326888-45326907 None:intergenic 35.0%
!! GTTAGCTTTGATTGAGAAAG+TGG + chr3.4:45327537-45327556 MS.gene88116:CDS 35.0%
!! GTTGTTTTACCTTTCTCTGA+TGG + chr3.4:45327685-45327704 MS.gene88116:CDS 35.0%
AACAATCCATCTCTTGCATC+GGG - chr3.4:45327520-45327539 None:intergenic 40.0%
CTACTATGCTTAGCACAGTT+TGG - chr3.4:45326826-45326845 None:intergenic 40.0%
GAAACACAAACTTCCACGTA+AGG + chr3.4:45327579-45327598 MS.gene88116:CDS 40.0%
GAAATCAAGTGATCTGAGAG+TGG - chr3.4:45327071-45327090 None:intergenic 40.0%
GAAGGAAGGGTAAACAGAAA+GGG - chr3.4:45327020-45327039 None:intergenic 40.0%
GAGTTGACAAAAGACAACTG+TGG - chr3.4:45326980-45326999 None:intergenic 40.0%
GGTCAGCTACAAAGTCTATT+GGG - chr3.4:45327858-45327877 None:intergenic 40.0%
GTCAGCTACAAAGTCTATTG+GGG - chr3.4:45327857-45327876 None:intergenic 40.0%
TAAGGAGTTGAGATGGTCAA+TGG - chr3.4:45326906-45326925 None:intergenic 40.0%
TGAAGGAAGGGTAAACAGAA+AGG - chr3.4:45327021-45327040 None:intergenic 40.0%
TGGTCAGCTACAAAGTCTAT+TGG - chr3.4:45327859-45327878 None:intergenic 40.0%
! GTTTTACCTTTCTCTGATGG+AGG + chr3.4:45327688-45327707 MS.gene88116:CDS 40.0%
!! GGTCAATGGATTTTGATCCA+AGG - chr3.4:45326892-45326911 None:intergenic 40.0%
AAATGGCGAACTCTCCGATT+TGG + chr3.4:45327719-45327738 MS.gene88116:CDS 45.0%
AATGGCGAACTCTCCGATTT+GGG + chr3.4:45327720-45327739 MS.gene88116:CDS 45.0%
AGTCACTAGAACCGGACTAT+CGG + chr3.4:45327804-45327823 MS.gene88116:CDS 45.0%
ATTGGGGTCGGAATTGAAGT+AGG - chr3.4:45327841-45327860 None:intergenic 45.0%
CAACAAGAGGATTGAGCACT+TGG - chr3.4:45327936-45327955 None:intergenic 45.0%
CAAGTGCTCAATCCTCTTGT+TGG + chr3.4:45327934-45327953 MS.gene88116:CDS 45.0%
CACCGAGAAGGTGAAAATCA+CGG - chr3.4:45327363-45327382 None:intergenic 45.0%
CCACGTAAGGAAGTGATAGT+GGG + chr3.4:45327592-45327611 MS.gene88116:CDS 45.0%
GAGAGGATAAGGAGTTGAGA+TGG - chr3.4:45326913-45326932 None:intergenic 45.0%
GCTACAAAGTCTATTGGGGT+CGG - chr3.4:45327853-45327872 None:intergenic 45.0%
GGAAAAGAGGTGAGAGGATA+AGG - chr3.4:45326924-45326943 None:intergenic 45.0%
GTCAAACCTCCATCAGAGAA+AGG - chr3.4:45327697-45327716 None:intergenic 45.0%
TCCACGTAAGGAAGTGATAG+TGG + chr3.4:45327591-45327610 MS.gene88116:CDS 45.0%
TTTCTTCCCGATGCAAGAGA+TGG + chr3.4:45327511-45327530 MS.gene88116:CDS 45.0%
! AGCACAGTTTGGAGTGACAA+CGG - chr3.4:45326815-45326834 None:intergenic 45.0%
! GACCGTGATTTTCACCTTCT+CGG + chr3.4:45327358-45327377 MS.gene88116:CDS 45.0%
!! AAGTGATAGTGGGTGACTTC+AGG + chr3.4:45327602-45327621 MS.gene88116:CDS 45.0%
!! AATTAGCGATTGATTCGCGG+TGG - chr3.4:45326715-45326734 None:intergenic 45.0%
AGACAACTGTGGACCACCAT+AGG - chr3.4:45326969-45326988 None:intergenic 50.0%
CACAGAGGAAAAGAGGTGAG+AGG - chr3.4:45326930-45326949 None:intergenic 50.0%
CCCACTATCACTTCCTTACG+TGG - chr3.4:45327595-45327614 None:intergenic 50.0%
CGTCTAGCACAGAGGAAAAG+AGG - chr3.4:45326937-45326956 None:intergenic 50.0%
GACAACTGTGGACCACCATA+GGG - chr3.4:45326968-45326987 None:intergenic 50.0%
GAGAGAAGCTGACGTTGTGT+CGG - chr3.4:45326866-45326885 None:intergenic 50.0%
GTCACTAGAACCGGACTATC+GGG + chr3.4:45327805-45327824 MS.gene88116:CDS 50.0%
GTGCTAAGCATAGTAGCTGC+CGG + chr3.4:45326830-45326849 MS.gene88116:CDS 50.0%
! CGTGATTTTCACCTTCTCGG+TGG + chr3.4:45327361-45327380 MS.gene88116:CDS 50.0%
ACGAGCACATCCCGATAGTC+CGG - chr3.4:45327818-45327837 None:intergenic 55.0%
CGTCAGCTTCTCTCCTTCCT+TGG + chr3.4:45326872-45326891 MS.gene88116:CDS 55.0%
GCTGCTGCAGTCACTAGAAC+CGG + chr3.4:45327796-45327815 MS.gene88116:CDS 55.0%
TCTCGGTGGCAGCTCAATCA+AGG + chr3.4:45327375-45327394 MS.gene88116:CDS 55.0%
TGATTGAGCTGCCACCGAGA+AGG - chr3.4:45327375-45327394 None:intergenic 55.0%
!! ATAGTAGCTGCCGGTTCCGA+GGG + chr3.4:45326839-45326858 MS.gene88116:CDS 55.0%
AGCAGCGTCGTCTAGCACAG+AGG - chr3.4:45326945-45326964 None:intergenic 60.0%
CTAGACGACGCTGCTCCCTA+TGG + chr3.4:45326950-45326969 MS.gene88116:CDS 60.0%
CTGACGTTGTGTCGGACCCT+CGG - chr3.4:45326858-45326877 None:intergenic 60.0%
TTGTGTCGGACCCTCGGAAC+CGG - chr3.4:45326852-45326871 None:intergenic 60.0%
!! CATAGTAGCTGCCGGTTCCG+AGG + chr3.4:45326838-45326857 MS.gene88116:CDS 60.0%
GACGACGCTGCTCCCTATGG+TGG + chr3.4:45326953-45326972 MS.gene88116:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 45326704 45327966 45326704 ID=MS.gene88116
chr3.4 mRNA 45326704 45327966 45326704 ID=MS.gene88116.t1;Parent=MS.gene88116
chr3.4 exon 45326704 45327099 45326704 ID=MS.gene88116.t1.exon1;Parent=MS.gene88116.t1
chr3.4 CDS 45326704 45327099 45326704 ID=cds.MS.gene88116.t1;Parent=MS.gene88116.t1
chr3.4 exon 45327187 45327966 45327187 ID=MS.gene88116.t1.exon2;Parent=MS.gene88116.t1
chr3.4 CDS 45327187 45327966 45327187 ID=cds.MS.gene88116.t1;Parent=MS.gene88116.t1
Gene Sequence

>MS.gene88116

ATGAGTTACCACCGCGAATCAATCGCTAATTTAACGAAGAATGCTATGAACATCACCAAACATTTGCTATCAAAAACAGAATTCAAGAAGAAGAATGTCGTGCTTTCGCCGTTGTCACTCCAAACTGTGCTAAGCATAGTAGCTGCCGGTTCCGAGGGTCCGACACAACGTCAGCTTCTCTCCTTCCTTGGATCAAAATCCATTGACCATCTCAACTCCTTATCCTCTCACCTCTTTTCCTCTGTGCTAGACGACGCTGCTCCCTATGGTGGTCCACAGTTGTCTTTTGTCAACTCTGTTTGGTTTGAAAAATCCCTTTCTGTTTACCCTTCCTTCAAAGAAATTGTTGATACTAATTATTTTGCCACTCTCAGATCACTTGATTTCATAAACAAGGTACCTATATATATTTTCCTTCTTTTTTTAGAACAGTAAATTCTTTTTTTTTTCTAATATAATTTTATATTTGTTGCTGTCGTAAAGGCTGATGAAGCCGTCAAAAAAGTGAATGTATGGGCTAAAAAAGAGACAAACGGACGTATTAGTGATGTTCTTTCACCTGGGTCAATTAATAGCTTAACTACGCTCGTTTTTGCTAATGCACTATACTTTAAAGGAGCATGGCATCAACCATTTGATGCTTCAAAAACAAAAGACCGTGATTTTCACCTTCTCGGTGGCAGCTCAATCAAGGTTCCCTTCATGACTAGCAAAAAGAAGCAGTTTATAAATGCTTTTGATGGTTTTAAGATCCTTCGTCTTCCTTATAAGAAAGGCAACGATATTCGTCAATTCTCTATGTACTTTTTTCTTCCCGATGCAAGAGATGGATTGTTAGCTTTGATTGAGAAAGTGGCTTCCAAACCTGAGATTTTGAAACACAAACTTCCACGTAAGGAAGTGATAGTGGGTGACTTCAGGATTCCACGTTTCAAAATTTATTCTGGACTTGAACTTTCTAATGTGTCAAAGGAGTTAGGAGTTGTTTTACCTTTCTCTGATGGAGGTTTGACAAAAATGGCGAACTCTCCGATTTGGGTTTCTAACATATTTCAAAAGTCTTTCATTGAAGTAAATGAAAAAGGCACTGAAGCTGCTGCAGTCACTAGAACCGGACTATCGGGATGTGCTCGTCCTACTTCAATTCCGACCCCAATAGACTTTGTAGCTGACCACCCTTTCACGTTTTTGATAAGAGACGATTTGTCTGGTACAATACTCTTTGTTGGCCAAGTGCTCAATCCTCTTGTTGGTAGATCATAA

Protein sequence

>MS.gene88116.t1

MSYHRESIANLTKNAMNITKHLLSKTEFKKKNVVLSPLSLQTVLSIVAAGSEGPTQRQLLSFLGSKSIDHLNSLSSHLFSSVLDDAAPYGGPQLSFVNSVWFEKSLSVYPSFKEIVDTNYFATLRSLDFINKADEAVKKVNVWAKKETNGRISDVLSPGSINSLTTLVFANALYFKGAWHQPFDASKTKDRDFHLLGGSSIKVPFMTSKKKQFINAFDGFKILRLPYKKGNDIRQFSMYFFLPDARDGLLALIEKVASKPEILKHKLPRKEVIVGDFRIPRFKIYSGLELSNVSKELGVVLPFSDGGLTKMANSPIWVSNIFQKSFIEVNEKGTEAAAVTRTGLSGCARPTSIPTPIDFVADHPFTFLIRDDLSGTILFVGQVLNPLVGRS