Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88320.t1 | KEH18097.1 | 53.9 | 284 | 6 | 3 | 9 | 167 | 97 | 380 | 1.20E-65 | 259.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88320.t1 | Q8L7B2 | 38.1 | 278 | 45 | 4 | 9 | 161 | 101 | 376 | 7.5e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88320.t1 | A0A072TKY7 | 53.9 | 284 | 6 | 3 | 9 | 167 | 97 | 380 | 8.8e-66 | 259.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058515 | MS.gene88320 | 0.805733 | 1.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88320.t1 | MTR_8g011350 | 65.217 | 184 | 9 | 3 | 46 | 174 | 211 | 394 | 2.93e-69 | 219 |
| MS.gene88320.t1 | MTR_8g011350 | 100.000 | 38 | 0 | 0 | 9 | 46 | 97 | 134 | 3.09e-18 | 82.4 |
| MS.gene88320.t1 | MTR_8g011350 | 65.217 | 184 | 9 | 3 | 46 | 174 | 211 | 394 | 4.06e-69 | 219 |
| MS.gene88320.t1 | MTR_8g011350 | 88.372 | 43 | 5 | 0 | 4 | 46 | 92 | 134 | 3.34e-18 | 82.4 |
| MS.gene88320.t1 | MTR_7g051430 | 44.444 | 171 | 44 | 3 | 46 | 166 | 210 | 379 | 2.70e-39 | 139 |
| MS.gene88320.t1 | MTR_7g051430 | 78.947 | 38 | 8 | 0 | 9 | 46 | 96 | 133 | 3.48e-13 | 67.8 |
| MS.gene88320.t1 | MTR_7g051430 | 44.444 | 171 | 44 | 3 | 46 | 166 | 210 | 379 | 1.35e-38 | 139 |
| MS.gene88320.t1 | MTR_7g051430 | 69.767 | 43 | 13 | 0 | 4 | 46 | 91 | 133 | 4.48e-13 | 67.4 |
| MS.gene88320.t1 | MTR_7g080180 | 40.206 | 194 | 58 | 5 | 46 | 183 | 210 | 401 | 6.50e-36 | 131 |
| MS.gene88320.t1 | MTR_7g080180 | 81.579 | 38 | 7 | 0 | 9 | 46 | 96 | 133 | 1.35e-14 | 72.0 |
| MS.gene88320.t1 | MTR_7g080180 | 40.206 | 194 | 58 | 5 | 46 | 183 | 210 | 401 | 1.13e-35 | 131 |
| MS.gene88320.t1 | MTR_7g080180 | 81.579 | 38 | 7 | 0 | 9 | 46 | 96 | 133 | 1.42e-14 | 72.0 |
| MS.gene88320.t1 | MTR_4g021535 | 29.268 | 205 | 96 | 6 | 9 | 166 | 103 | 305 | 2.95e-14 | 70.9 |
| MS.gene88320.t1 | MTR_0024s0320 | 80.000 | 35 | 7 | 0 | 46 | 80 | 39 | 73 | 1.13e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88320.t1 | AT4G12910 | 47.561 | 164 | 36 | 3 | 46 | 161 | 215 | 376 | 2.07e-39 | 140 |
| MS.gene88320.t1 | AT4G12910 | 62.745 | 51 | 17 | 1 | 9 | 59 | 101 | 149 | 2.39e-12 | 65.5 |
| MS.gene88320.t1 | AT4G12910 | 47.561 | 164 | 36 | 3 | 46 | 161 | 215 | 376 | 3.64e-39 | 140 |
| MS.gene88320.t1 | AT4G12910 | 62.745 | 51 | 17 | 1 | 9 | 59 | 101 | 149 | 2.47e-12 | 65.5 |
| MS.gene88320.t1 | AT3G25420 | 44.643 | 168 | 39 | 3 | 46 | 161 | 208 | 373 | 1.59e-35 | 130 |
| MS.gene88320.t1 | AT1G73270 | 33.043 | 115 | 67 | 4 | 46 | 158 | 213 | 319 | 3.38e-11 | 62.0 |
| MS.gene88320.t1 | AT1G73270 | 33.043 | 115 | 67 | 4 | 46 | 158 | 213 | 319 | 3.93e-11 | 62.0 |
Find 49 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTGATTTAGCAGAAT+TGG | 0.262392 | 5.3:-14865713 | None:intergenic |
| AGATTATCACATCCTATATT+AGG | 0.278941 | 5.3:+14865029 | MS.gene88320:CDS |
| CATACCTTGGTCCAGCTATA+TGG | 0.285880 | 5.3:-14864153 | None:intergenic |
| CATCTCTCACAGGTGCTCTA+AGG | 0.317256 | 5.3:-14865132 | None:intergenic |
| CCATCTAGTTTCCGTGAGTT+AGG | 0.323444 | 5.3:+14865055 | MS.gene88320:CDS |
| TCTGTTGTTTCTAAATTTGT+TGG | 0.355882 | 5.3:-14866061 | None:intergenic |
| CATCACTTCATCACCAACTT+TGG | 0.356336 | 5.3:-14865758 | None:intergenic |
| TGGCAATTGATGATTTCTTC+AGG | 0.362023 | 5.3:+14864072 | MS.gene88320:CDS |
| TATCTCAGATGAATTGTTTG+AGG | 0.408758 | 5.3:+14864671 | MS.gene88320:CDS |
| AGAGTCTAAATATATAATAC+TGG | 0.418253 | 5.3:-14864562 | None:intergenic |
| ACTAGATGGTAACCTAATAT+AGG | 0.418547 | 5.3:-14865041 | None:intergenic |
| ATCTCTCACAGGTGCTCTAA+GGG | 0.423846 | 5.3:-14865131 | None:intergenic |
| CCTAACTCACGGAAACTAGA+TGG | 0.432685 | 5.3:-14865055 | None:intergenic |
| AGACCCATCCCATGTACAAT+TGG | 0.442124 | 5.3:-14864648 | None:intergenic |
| TGTTCCAATTGTACATGGGA+TGG | 0.451953 | 5.3:+14864644 | MS.gene88320:CDS |
| TTCTGCTAAATCAATTGAAA+AGG | 0.460788 | 5.3:+14865717 | MS.gene88320:CDS |
| TCTCCTGCTGGTTACATAGT+TGG | 0.465774 | 5.3:+14864582 | MS.gene88320:CDS |
| GCTCTTGTTCCAATTGTACA+TGG | 0.474242 | 5.3:+14864639 | MS.gene88320:CDS |
| GATTGAGGTGCAGAGTTGGC+AGG | 0.485652 | 5.3:-14864131 | None:intergenic |
| GGTTGAACAATGAAGAAGTC+AGG | 0.487179 | 5.3:+14865397 | MS.gene88320:CDS |
| GCCTCTGTGCCGTGGTAGCA+TGG | 0.493000 | 5.3:-14865001 | None:intergenic |
| GTTCCAATTGTACATGGGAT+GGG | 0.498491 | 5.3:+14864645 | MS.gene88320:CDS |
| TTTGCTGCTTCAAAATTGAA+AGG | 0.501124 | 5.3:-14864096 | None:intergenic |
| AAAGAATGTTCGGTCGTGCT+TGG | 0.503362 | 5.3:+14865107 | MS.gene88320:CDS |
| TTTGAAGCAGCAAAGACAAA+GGG | 0.512920 | 5.3:+14864105 | MS.gene88320:CDS |
| TGCACCTCAATCCATATAGC+TGG | 0.517012 | 5.3:+14864142 | MS.gene88320:CDS |
| GCTGGTTACATAGTTGGAAA+TGG | 0.524879 | 5.3:+14864588 | MS.gene88320:CDS |
| GTTACAGATGAACAAATTGA+TGG | 0.533753 | 5.3:+14864612 | MS.gene88320:CDS |
| CCTGTGAGGAAAAGAATGTT+CGG | 0.536839 | 5.3:+14865097 | MS.gene88320:CDS |
| AAAGCATTAAAATCCAAAGT+TGG | 0.538383 | 5.3:+14865745 | MS.gene88320:CDS |
| ATATATTTAGACTCTCCTGC+TGG | 0.546816 | 5.3:+14864570 | MS.gene88320:CDS |
| TATGGATTGAGGTGCAGAGT+TGG | 0.550426 | 5.3:-14864135 | None:intergenic |
| AACAGATGGTAGACATTCAT+CGG | 0.553448 | 5.3:+14866078 | MS.gene88320:CDS |
| TTTCAGTCTCACCTAACTCA+CGG | 0.568224 | 5.3:-14865066 | None:intergenic |
| TGGTCCAGCTATATGGATTG+AGG | 0.571480 | 5.3:-14864146 | None:intergenic |
| TCTTATCTGCCTCTGTGCCG+TGG | 0.592423 | 5.3:-14865009 | None:intergenic |
| TTTCCAACTATGTAACCAGC+AGG | 0.601514 | 5.3:-14864585 | None:intergenic |
| ATGGCTCTGTTGCAAATGCA+TGG | 0.623040 | 5.3:+14865376 | MS.gene88320:CDS |
| CAAAGTTGGTGATGAAGTGA+TGG | 0.627478 | 5.3:+14865759 | MS.gene88320:CDS |
| ATTCTAGAACCATGCTACCA+CGG | 0.649207 | 5.3:+14864992 | MS.gene88320:CDS |
| CTCTTGTTCCAATTGTACAT+GGG | 0.649440 | 5.3:+14864640 | MS.gene88320:CDS |
| ACAAATTTAGAAACAACAGA+TGG | 0.651062 | 5.3:+14866064 | MS.gene88320:CDS |
| GGAGTCTAGCTACCGCCTCG+AGG | 0.654902 | 5.3:+14866099 | MS.gene88320:CDS |
| GAAAGCAATTCACACTGCAG+AGG | 0.668971 | 5.3:+14865419 | MS.gene88320:CDS |
| TCTCTCACAGGTGCTCTAAG+GGG | 0.683162 | 5.3:-14865130 | None:intergenic |
| TGCTTCAATGATCCTCGAGG+CGG | 0.695198 | 5.3:-14866111 | None:intergenic |
| CAATCCATATAGCTGGACCA+AGG | 0.709270 | 5.3:+14864149 | MS.gene88320:CDS |
| TGTTGCTTCAATGATCCTCG+AGG | 0.725983 | 5.3:-14866114 | None:intergenic |
| ACCATGCTACCACGGCACAG+AGG | 0.736692 | 5.3:+14865000 | MS.gene88320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTAGCATTTCTA+AGG | - | chr5.3:14865317-14865336 | None:intergenic | 15.0% |
| !! | ATATAAATCGTAAAATAACA+TGG | - | chr5.3:14865899-14865918 | None:intergenic | 15.0% |
| !! | TTATAAGAAATAAGTGAATT+TGG | + | chr5.3:14864914-14864933 | MS.gene88320:intron | 15.0% |
| !! | TTATACTAAATATACATTGA+AGG | - | chr5.3:14865560-14865579 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTGTTATCAAA+TGG | + | chr5.3:14864509-14864528 | MS.gene88320:intron | 15.0% |
| !!! | TTGATGATTCTTATTATTTT+AGG | + | chr5.3:14864943-14864962 | MS.gene88320:intron | 15.0% |
| !!! | TTTTTAAAAAATTCATACCT+TGG | - | chr5.3:14864169-14864188 | None:intergenic | 15.0% |
| !! | AGAGTCTAAATATATAATAC+TGG | - | chr5.3:14864565-14864584 | None:intergenic | 20.0% |
| !! | TATAAAATACCAATCATGAT+GGG | + | chr5.3:14865575-14865594 | MS.gene88320:intron | 20.0% |
| !!! | AAAATCAGTTGAATTTTGAA+AGG | + | chr5.3:14864185-14864204 | MS.gene88320:intron | 20.0% |
| !!! | AAATCAGTTGAATTTTGAAA+GGG | + | chr5.3:14864186-14864205 | MS.gene88320:intron | 20.0% |
| !!! | AATAGATTTTCTTTTAGACA+AGG | - | chr5.3:14865853-14865872 | None:intergenic | 20.0% |
| !!! | TATTATTTTAGGACATTGAT+GGG | + | chr5.3:14864954-14864973 | MS.gene88320:intron | 20.0% |
| !!! | TATTTCTATAACATCAGATA+AGG | - | chr5.3:14864391-14864410 | None:intergenic | 20.0% |
| !!! | TTATTATTTTAGGACATTGA+TGG | + | chr5.3:14864953-14864972 | MS.gene88320:intron | 20.0% |
| ! | AAATCAACTAGTAGCTAATA+AGG | - | chr5.3:14865261-14865280 | None:intergenic | 25.0% |
| ! | ACAAATTTAGAAACAACAGA+TGG | + | chr5.3:14866064-14866083 | MS.gene88320:CDS | 25.0% |
| ! | AGATTATCACATCCTATATT+AGG | + | chr5.3:14865029-14865048 | MS.gene88320:CDS | 25.0% |
| ! | GCTAATAAGGAGATATTAAA+TGG | - | chr5.3:14865248-14865267 | None:intergenic | 25.0% |
| ! | GTATAAAATACCAATCATGA+TGG | + | chr5.3:14865574-14865593 | MS.gene88320:intron | 25.0% |
| ! | TTACAAGACAATATATAGCA+AGG | - | chr5.3:14864749-14864768 | None:intergenic | 25.0% |
| ! | TTCTGCTAAATCAATTGAAA+AGG | + | chr5.3:14865717-14865736 | MS.gene88320:CDS | 25.0% |
| !! | AAAGCATTAAAATCCAAAGT+TGG | + | chr5.3:14865745-14865764 | MS.gene88320:CDS | 25.0% |
| !! | TTCAATTGATTTAGCAGAAT+TGG | - | chr5.3:14865716-14865735 | None:intergenic | 25.0% |
| !! | TTTTGACATTCAAAGTATAG+AGG | - | chr5.3:14865464-14865483 | None:intergenic | 25.0% |
| !!! | TCTGTTGTTTCTAAATTTGT+TGG | - | chr5.3:14866064-14866083 | None:intergenic | 25.0% |
| ACACAATATTGAAACTGAAG+AGG | - | chr5.3:14865994-14866013 | None:intergenic | 30.0% | |
| ACTAGATGGTAACCTAATAT+AGG | - | chr5.3:14865044-14865063 | None:intergenic | 30.0% | |
| ATTTATTTAGCCCTTCCTAT+AGG | + | chr5.3:14865690-14865709 | MS.gene88320:intron | 30.0% | |
| CACAATATTGAAACTGAAGA+GGG | - | chr5.3:14865993-14866012 | None:intergenic | 30.0% | |
| CATAAACGTCTATCATGTAA+GGG | - | chr5.3:14864427-14864446 | None:intergenic | 30.0% | |
| CATGACCTAACAATATCTTT+AGG | + | chr5.3:14865353-14865372 | MS.gene88320:intron | 30.0% | |
| GATGATTTCTTCTCATAGTT+TGG | + | chr5.3:14864212-14864231 | MS.gene88320:intron | 30.0% | |
| GGCTAAATAAATCAAACAAG+AGG | - | chr5.3:14865682-14865701 | None:intergenic | 30.0% | |
| GTAAAGAAACATATTGTGCA+TGG | - | chr5.3:14865202-14865221 | None:intergenic | 30.0% | |
| GTTACAGATGAACAAATTGA+TGG | + | chr5.3:14864612-14864631 | MS.gene88320:CDS | 30.0% | |
| TATCTCAGATGAATTGTTTG+AGG | + | chr5.3:14864671-14864690 | MS.gene88320:CDS | 30.0% | |
| TGAATTACACAACTCTTGTT+TGG | - | chr5.3:14864477-14864496 | None:intergenic | 30.0% | |
| TGCACAATAACTATCTTTGA+AGG | - | chr5.3:14865656-14865675 | None:intergenic | 30.0% | |
| TGCTATATAGCATTGTTCTT+TGG | + | chr5.3:14865932-14865951 | MS.gene88320:intron | 30.0% | |
| ! | ACCTAACAATATCTTTAGGA+TGG | + | chr5.3:14865357-14865376 | MS.gene88320:intron | 30.0% |
| ! | TGATTCTGATTTTGCATTAC+AGG | + | chr5.3:14864536-14864555 | MS.gene88320:intron | 30.0% |
| ! | TTCCAAACTTGCTCTTAAAA+GGG | - | chr5.3:14864707-14864726 | None:intergenic | 30.0% |
| ! | TTGTTGCTATTGATAAGTTG+TGG | - | chr5.3:14865175-14865194 | None:intergenic | 30.0% |
| ! | TTTGCTGCTTCAAAATTGAA+AGG | - | chr5.3:14864099-14864118 | None:intergenic | 30.0% |
| !! | TAGGTCATGTTACTTGTTTT+TGG | - | chr5.3:14865342-14865361 | None:intergenic | 30.0% |
| !! | TTCTTCTCATAGTTTGGTTT+TGG | + | chr5.3:14864218-14864237 | MS.gene88320:intron | 30.0% |
| !!! | TCTTCTCATAGTTTGGTTTT+GGG | + | chr5.3:14864219-14864238 | MS.gene88320:intron | 30.0% |
| AACAGATGGTAGACATTCAT+CGG | + | chr5.3:14866078-14866097 | MS.gene88320:CDS | 35.0% | |
| ACTTTGCCTTTCAACCAATT+TGG | - | chr5.3:14865800-14865819 | None:intergenic | 35.0% | |
| ATATATTTAGACTCTCCTGC+TGG | + | chr5.3:14864570-14864589 | MS.gene88320:CDS | 35.0% | |
| CTCTTGTTCCAATTGTACAT+GGG | + | chr5.3:14864640-14864659 | MS.gene88320:CDS | 35.0% | |
| GCATAAACGTCTATCATGTA+AGG | - | chr5.3:14864428-14864447 | None:intergenic | 35.0% | |
| GCCATCCTAAAGATATTGTT+AGG | - | chr5.3:14865361-14865380 | None:intergenic | 35.0% | |
| TCTGATGAAACAGAAAAGTG+TGG | + | chr5.3:14865501-14865520 | MS.gene88320:intron | 35.0% | |
| TTGAAAGGCAAAGTAAAGGT+AGG | + | chr5.3:14865806-14865825 | MS.gene88320:intron | 35.0% | |
| TTGGTTGAAAGGCAAAGTAA+AGG | + | chr5.3:14865802-14865821 | MS.gene88320:intron | 35.0% | |
| ! | ATTTAGCAGAATTGGCCTAT+AGG | - | chr5.3:14865708-14865727 | None:intergenic | 35.0% |
| ! | GTTCCAAACTTGCTCTTAAA+AGG | - | chr5.3:14864708-14864727 | None:intergenic | 35.0% |
| ! | TGGCAATTGATGATTTCTTC+AGG | + | chr5.3:14864072-14864091 | MS.gene88320:CDS | 35.0% |
| ! | TTTGAAGCAGCAAAGACAAA+GGG | + | chr5.3:14864105-14864124 | MS.gene88320:CDS | 35.0% |
| !! | CAGTTGAATTTTGAAAGGGA+AGG | + | chr5.3:14864190-14864209 | MS.gene88320:intron | 35.0% |
| !! | TACCCTTTTAAGAGCAAGTT+TGG | + | chr5.3:14864702-14864721 | MS.gene88320:intron | 35.0% |
| !! | TTTTGGGTAGAGACTCTATA+GGG | + | chr5.3:14864235-14864254 | MS.gene88320:intron | 35.0% |
| !!! | TTTTGAAGCAGCAAAGACAA+AGG | + | chr5.3:14864104-14864123 | MS.gene88320:CDS | 35.0% |
| CATCACTTCATCACCAACTT+TGG | - | chr5.3:14865761-14865780 | None:intergenic | 40.0% | |
| CCTGTGAGGAAAAGAATGTT+CGG | + | chr5.3:14865097-14865116 | MS.gene88320:CDS | 40.0% | |
| GACATCATTCCCATCATGAT+TGG | - | chr5.3:14865587-14865606 | None:intergenic | 40.0% | |
| GCTCTTGTTCCAATTGTACA+TGG | + | chr5.3:14864639-14864658 | MS.gene88320:CDS | 40.0% | |
| GCTGGTTACATAGTTGGAAA+TGG | + | chr5.3:14864588-14864607 | MS.gene88320:CDS | 40.0% | |
| GGTTGAACAATGAAGAAGTC+AGG | + | chr5.3:14865397-14865416 | MS.gene88320:CDS | 40.0% | |
| GTTCCAATTGTACATGGGAT+GGG | + | chr5.3:14864645-14864664 | MS.gene88320:CDS | 40.0% | |
| TGTTCCAATTGTACATGGGA+TGG | + | chr5.3:14864644-14864663 | MS.gene88320:CDS | 40.0% | |
| TTGAGGCCAAATTGGTTGAA+AGG | + | chr5.3:14865791-14865810 | MS.gene88320:intron | 40.0% | |
| TTGATAAGTTGTGGCCAAGT+TGG | - | chr5.3:14865166-14865185 | None:intergenic | 40.0% | |
| TTTCAGTCTCACCTAACTCA+CGG | - | chr5.3:14865069-14865088 | None:intergenic | 40.0% | |
| TTTCCAACTATGTAACCAGC+AGG | - | chr5.3:14864588-14864607 | None:intergenic | 40.0% | |
| ! | AGAAAAGTGTGGTCAGTAGT+TGG | + | chr5.3:14865512-14865531 | MS.gene88320:intron | 40.0% |
| ! | ATTCTTTTCCTCACAGGATG+AGG | - | chr5.3:14865094-14865113 | None:intergenic | 40.0% |
| ! | GAAAAGTGTGGTCAGTAGTT+GGG | + | chr5.3:14865513-14865532 | MS.gene88320:intron | 40.0% |
| !! | ATTCTAGAACCATGCTACCA+CGG | + | chr5.3:14864992-14865011 | MS.gene88320:CDS | 40.0% |
| !! | CAAAGTTGGTGATGAAGTGA+TGG | + | chr5.3:14865759-14865778 | MS.gene88320:CDS | 40.0% |
| !! | GTTTTGGGTAGAGACTCTAT+AGG | + | chr5.3:14864234-14864253 | MS.gene88320:intron | 40.0% |
| AAAGAATGTTCGGTCGTGCT+TGG | + | chr5.3:14865107-14865126 | MS.gene88320:CDS | 45.0% | |
| AAGCTCTCAAACAGTCTCAC+AGG | - | chr5.3:14864301-14864320 | None:intergenic | 45.0% | |
| AGAAATTCCCATCACACTCG+CGG | - | chr5.3:14864816-14864835 | None:intergenic | 45.0% | |
| AGACCCATCCCATGTACAAT+TGG | - | chr5.3:14864651-14864670 | None:intergenic | 45.0% | |
| ATCTCTCACAGGTGCTCTAA+GGG | - | chr5.3:14865134-14865153 | None:intergenic | 45.0% | |
| CAATCCATATAGCTGGACCA+AGG | + | chr5.3:14864149-14864168 | MS.gene88320:CDS | 45.0% | |
| CATACCTTGGTCCAGCTATA+TGG | - | chr5.3:14864156-14864175 | None:intergenic | 45.0% | |
| CCTAACTCACGGAAACTAGA+TGG | - | chr5.3:14865058-14865077 | None:intergenic | 45.0% | |
| CTGAAAAACCTCATCCTGTG+AGG | + | chr5.3:14865083-14865102 | MS.gene88320:CDS | 45.0% | |
| GAAAGCAATTCACACTGCAG+AGG | + | chr5.3:14865419-14865438 | MS.gene88320:CDS | 45.0% | |
| GAAGTCACTTGAGGCCAAAT+TGG | + | chr5.3:14865783-14865802 | MS.gene88320:intron | 45.0% | |
| GAGATGGCAACATACCAACT+TGG | + | chr5.3:14865149-14865168 | MS.gene88320:intron | 45.0% | |
| TGCACCTCAATCCATATAGC+TGG | + | chr5.3:14864142-14864161 | MS.gene88320:CDS | 45.0% | |
| ! | AGCAGAATTGGCCTATAGGA+AGG | - | chr5.3:14865704-14865723 | None:intergenic | 45.0% |
| ! | AGTGATGGTGAAGTCACTTG+AGG | + | chr5.3:14865774-14865793 | MS.gene88320:intron | 45.0% |
| ! | ATGGCTCTGTTGCAAATGCA+TGG | + | chr5.3:14865376-14865395 | MS.gene88320:CDS | 45.0% |
| ! | CCATCTAGTTTCCGTGAGTT+AGG | + | chr5.3:14865055-14865074 | MS.gene88320:CDS | 45.0% |
| ! | CCGAACATTCTTTTCCTCAC+AGG | - | chr5.3:14865100-14865119 | None:intergenic | 45.0% |
| ! | GCAGAATTGGCCTATAGGAA+GGG | - | chr5.3:14865703-14865722 | None:intergenic | 45.0% |
| ! | TATGGATTGAGGTGCAGAGT+TGG | - | chr5.3:14864138-14864157 | None:intergenic | 45.0% |
| ! | TCTCCTGCTGGTTACATAGT+TGG | + | chr5.3:14864582-14864601 | MS.gene88320:CDS | 45.0% |
| ! | TGGTCCAGCTATATGGATTG+AGG | - | chr5.3:14864149-14864168 | None:intergenic | 45.0% |
| AGGTTAACCGCGAGTGTGAT+GGG | + | chr5.3:14864806-14864825 | MS.gene88320:intron | 50.0% | |
| ATGTTGCACTCTGTTGCAGG+AGG | + | chr5.3:14864786-14864805 | MS.gene88320:intron | 50.0% | |
| CAATTCACACTGCAGAGGTG+AGG | + | chr5.3:14865424-14865443 | MS.gene88320:intron | 50.0% | |
| CATCTCTCACAGGTGCTCTA+AGG | - | chr5.3:14865135-14865154 | None:intergenic | 50.0% | |
| GGTATGTTGCCATCTCTCAC+AGG | - | chr5.3:14865145-14865164 | None:intergenic | 50.0% | |
| GTCATGTTGCACTCTGTTGC+AGG | + | chr5.3:14864783-14864802 | MS.gene88320:intron | 50.0% | |
| ! | CTTAGAGCACCTGTGAGAGA+TGG | + | chr5.3:14865133-14865152 | MS.gene88320:intron | 50.0% |
| ! | TCTCTCACAGGTGCTCTAAG+GGG | - | chr5.3:14865133-14865152 | None:intergenic | 50.0% |
| GAGGTTAACCGCGAGTGTGA+TGG | + | chr5.3:14864805-14864824 | MS.gene88320:intron | 55.0% | |
| GATTGAGGTGCAGAGTTGGC+AGG | - | chr5.3:14864134-14864153 | None:intergenic | 55.0% | |
| TCTTATCTGCCTCTGTGCCG+TGG | - | chr5.3:14865012-14865031 | None:intergenic | 55.0% | |
| ACCATGCTACCACGGCACAG+AGG | + | chr5.3:14865000-14865019 | MS.gene88320:CDS | 60.0% | |
| GCCTCTGTGCCGTGGTAGCA+TGG | - | chr5.3:14865004-14865023 | None:intergenic | 65.0% | |
| GGAGTCTAGCTACCGCCTCG+AGG | + | chr5.3:14866099-14866118 | MS.gene88320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14864069 | 14866129 | 14864069 | ID=MS.gene88320 |
| chr5.3 | mRNA | 14864069 | 14866129 | 14864069 | ID=MS.gene88320.t1;Parent=MS.gene88320 |
| chr5.3 | exon | 14864069 | 14864170 | 14864069 | ID=MS.gene88320.t1.exon1;Parent=MS.gene88320.t1 |
| chr5.3 | CDS | 14864069 | 14864170 | 14864069 | ID=cds.MS.gene88320.t1;Parent=MS.gene88320.t1 |
| chr5.3 | exon | 14864558 | 14864692 | 14864558 | ID=MS.gene88320.t1.exon2;Parent=MS.gene88320.t1 |
| chr5.3 | CDS | 14864558 | 14864692 | 14864558 | ID=cds.MS.gene88320.t1;Parent=MS.gene88320.t1 |
| chr5.3 | exon | 14864965 | 14865144 | 14864965 | ID=MS.gene88320.t1.exon3;Parent=MS.gene88320.t1 |
| chr5.3 | CDS | 14864965 | 14865144 | 14864965 | ID=cds.MS.gene88320.t1;Parent=MS.gene88320.t1 |
| chr5.3 | exon | 14865375 | 14865440 | 14865375 | ID=MS.gene88320.t1.exon4;Parent=MS.gene88320.t1 |
| chr5.3 | CDS | 14865375 | 14865440 | 14865375 | ID=cds.MS.gene88320.t1;Parent=MS.gene88320.t1 |
| chr5.3 | exon | 14865712 | 14865780 | 14865712 | ID=MS.gene88320.t1.exon5;Parent=MS.gene88320.t1 |
| chr5.3 | CDS | 14865712 | 14865780 | 14865712 | ID=cds.MS.gene88320.t1;Parent=MS.gene88320.t1 |
| chr5.3 | exon | 14866061 | 14866129 | 14866061 | ID=MS.gene88320.t1.exon6;Parent=MS.gene88320.t1 |
| chr5.3 | CDS | 14866061 | 14866129 | 14866061 | ID=cds.MS.gene88320.t1;Parent=MS.gene88320.t1 |
| Gene Sequence |
| Protein sequence |
