Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88714.t1 | XP_003615537.2 | 96.4 | 870 | 29 | 1 | 1 | 870 | 1 | 868 | 0.00E+00 | 1522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88714.t1 | A4FVR1 | 30.7 | 257 | 140 | 8 | 616 | 870 | 355 | 575 | 5.5e-15 | 84.7 |
| MS.gene88714.t1 | A4FVR1 | 40.4 | 146 | 70 | 5 | 3 | 133 | 6 | 149 | 1.1e-12 | 77.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88714.t1 | G7KE04 | 96.4 | 870 | 29 | 1 | 1 | 870 | 1 | 868 | 0.0e+00 | 1522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene88714 | -0.801369 | 9.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88714.t1 | MTR_5g069290 | 97.241 | 870 | 22 | 1 | 1 | 870 | 1 | 868 | 0.0 | 1708 |
| MS.gene88714.t1 | MTR_5g096290 | 37.866 | 478 | 222 | 11 | 393 | 870 | 371 | 773 | 4.73e-65 | 233 |
| MS.gene88714.t1 | MTR_5g096290 | 30.541 | 573 | 315 | 16 | 10 | 557 | 16 | 530 | 1.33e-38 | 154 |
| MS.gene88714.t1 | MTR_8g019650 | 27.699 | 704 | 361 | 37 | 223 | 870 | 395 | 1006 | 4.95e-34 | 141 |
| MS.gene88714.t1 | MTR_8g019650 | 66.216 | 74 | 18 | 1 | 14 | 80 | 22 | 95 | 5.05e-21 | 99.8 |
| MS.gene88714.t1 | MTR_8g088190 | 50.685 | 73 | 33 | 1 | 10 | 82 | 18 | 87 | 2.38e-16 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88714.t1 | AT3G07660 | 46.214 | 898 | 398 | 25 | 1 | 870 | 1 | 841 | 0.0 | 621 |
| MS.gene88714.t1 | AT3G13990 | 27.932 | 938 | 495 | 42 | 10 | 870 | 15 | 848 | 2.32e-44 | 173 |
| MS.gene88714.t1 | AT3G13990 | 29.703 | 505 | 280 | 22 | 10 | 470 | 15 | 488 | 1.86e-27 | 120 |
| MS.gene88714.t1 | AT3G13222 | 51.304 | 115 | 42 | 4 | 5 | 116 | 9 | 112 | 4.36e-23 | 105 |
| MS.gene88714.t1 | AT1G55820 | 41.353 | 133 | 62 | 4 | 3 | 121 | 6 | 136 | 7.23e-18 | 88.6 |
| MS.gene88714.t1 | AT4G18150 | 41.818 | 110 | 55 | 5 | 10 | 116 | 15 | 118 | 1.74e-14 | 78.2 |
| MS.gene88714.t1 | AT1G29370 | 40.411 | 146 | 66 | 6 | 10 | 150 | 17 | 146 | 1.95e-13 | 75.1 |
| MS.gene88714.t1 | AT1G29350 | 40.411 | 146 | 66 | 6 | 10 | 150 | 17 | 146 | 1.97e-13 | 75.1 |
Find 270 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGATCTCTTTGATATTC+TGG | 0.088348 | 5.4:-54155767 | None:intergenic |
| CAGCACCCGGCCGGTAAAAT+TGG | 0.136218 | 5.4:-54161404 | None:intergenic |
| TCCAGCAATGCACCAATATT+TGG | 0.143402 | 5.4:+54163669 | MS.gene88714:CDS |
| ATTCCCGGGGCTGCCACAGC+TGG | 0.195537 | 5.4:-54163745 | None:intergenic |
| AGATGAGTGGTAGTGGGTTT+AGG | 0.212472 | 5.4:+54155712 | None:intergenic |
| CCCAAATATTGGTGCATTGC+TGG | 0.223600 | 5.4:-54163670 | None:intergenic |
| GGAAGTTTGGGAGTCAATTT+TGG | 0.226603 | 5.4:+54160337 | MS.gene88714:CDS |
| TCCTGAGATGTTTCAGAAAA+TGG | 0.232011 | 5.4:-54160412 | None:intergenic |
| TTCAACAGTTGGTTCTAATA+AGG | 0.237303 | 5.4:+54160069 | MS.gene88714:intron |
| GATGAGTGGTAGTGGGTTTA+GGG | 0.242601 | 5.4:+54155713 | None:intergenic |
| GTTTCTCCGTTTGCTTCTGC+TGG | 0.262397 | 5.4:+54161441 | MS.gene88714:CDS |
| ACCATCAGTTAATTTGTTCT+TGG | 0.264902 | 5.4:-54159257 | None:intergenic |
| GTTTCTCCAAACTATGGTTT+TGG | 0.272007 | 5.4:+54161161 | MS.gene88714:CDS |
| GGGTGATAGATGCTTGTAAA+AGG | 0.276381 | 5.4:-54164472 | None:intergenic |
| GACATAATGGTTCAATCTTC+TGG | 0.276794 | 5.4:+54158998 | MS.gene88714:CDS |
| TGTGGGACCATTAGCAATAA+TGG | 0.282139 | 5.4:-54158915 | None:intergenic |
| CACTCAGAAGCTTCTCCTTC+AGG | 0.282613 | 5.4:+54155854 | MS.gene88714:CDS |
| GGGTTTGCTGCATTTGTTCC+AGG | 0.291046 | 5.4:-54163793 | None:intergenic |
| CATGATTCTTTGCCACTCCC+TGG | 0.301522 | 5.4:-54159427 | None:intergenic |
| CTTGTTATGCCAAACACTTT+TGG | 0.302208 | 5.4:+54163823 | MS.gene88714:CDS |
| TCTTAACTCAACAGTCAAAA+TGG | 0.305802 | 5.4:+54160963 | MS.gene88714:intron |
| TGCAACTTGATTTGATTTAT+CGG | 0.314460 | 5.4:-54159065 | None:intergenic |
| GCAACAGATGCTTCTGGAAC+TGG | 0.318131 | 5.4:+54159085 | MS.gene88714:CDS |
| ATGCATGTTTCTCCAAACTA+TGG | 0.321865 | 5.4:+54161155 | MS.gene88714:CDS |
| GGCCGTGGCCAGCCTGAGTT+GGG | 0.323976 | 5.4:-54164450 | None:intergenic |
| CTCAGACACGTGATGTTTCT+CGG | 0.330126 | 5.4:+54161237 | MS.gene88714:CDS |
| CTCGTTAGAGGCTGAATTCC+CGG | 0.336265 | 5.4:-54163896 | None:intergenic |
| CCTCCAAACTACATTCCTTA+TGG | 0.336677 | 5.4:+54163616 | MS.gene88714:CDS |
| CTCTTCTTCTGATCCAGTAT+TGG | 0.339539 | 5.4:+54159135 | MS.gene88714:CDS |
| GTATCTAAAGGGAAAAGTTC+TGG | 0.347606 | 5.4:+54158570 | MS.gene88714:CDS |
| CTCAACATGCACAGATGAAT+TGG | 0.351016 | 5.4:+54164602 | MS.gene88714:CDS |
| TTATCAGATGGAACCAATAC+TGG | 0.351171 | 5.4:-54159148 | None:intergenic |
| TCAGGTACTATGATATGATT+TGG | 0.352194 | 5.4:-54160289 | None:intergenic |
| GAAGGGCTTCCATGAGTTAC+TGG | 0.355228 | 5.4:-54159476 | None:intergenic |
| TGGGAAGTCAACACTCTCTT+GGG | 0.358013 | 5.4:+54159212 | MS.gene88714:CDS |
| TGGTTCCATCTGATAATTCA+TGG | 0.361339 | 5.4:+54159155 | MS.gene88714:CDS |
| GGGAGGGGCTGCTGCGTAAC+AGG | 0.361946 | 5.4:-54163559 | None:intergenic |
| AACTTGTTCTTCTCAGAATC+AGG | 0.365205 | 5.4:-54160307 | None:intergenic |
| CTGGGTGATTGTGGGTGGTC+AGG | 0.368299 | 5.4:-54161014 | None:intergenic |
| TTCCCGGGGCTGCCACAGCT+GGG | 0.368434 | 5.4:-54163744 | None:intergenic |
| TCTTGAGGAGTTTGAGAATT+CGG | 0.368538 | 5.4:-54161507 | None:intergenic |
| GGTCCCACAAATGTGGCTTC+TGG | 0.370778 | 5.4:+54158929 | MS.gene88714:CDS |
| CCATATATTCCAAAAGTGTT+TGG | 0.372219 | 5.4:-54163832 | None:intergenic |
| CGCAACATTGCTGTTGTACT+TGG | 0.378836 | 5.4:-54161472 | None:intergenic |
| CAAGTTGCAACAGATGCTTC+TGG | 0.380322 | 5.4:+54159079 | MS.gene88714:CDS |
| GCTGGAGGTTGGACATAAAA+TGG | 0.381904 | 5.4:-54163652 | None:intergenic |
| GCAGCTGTCACTCCTTGTGC+AGG | 0.384617 | 5.4:-54164493 | None:intergenic |
| CCATGAGTTACTGGTGTTGA+TGG | 0.384796 | 5.4:-54159467 | None:intergenic |
| GCCCCTCCCTGTCTATCGGC+CGG | 0.391313 | 5.4:+54163573 | MS.gene88714:CDS |
| AGCTTCTGAGTGGTTTCATT+GGG | 0.391609 | 5.4:-54155843 | None:intergenic |
| ATGCACCATTACCCAAATAT+TGG | 0.394764 | 5.4:-54163681 | None:intergenic |
| GTGGGACCATTAGCAATAAT+GGG | 0.395736 | 5.4:-54158914 | None:intergenic |
| TCTTGGTTCTTCTCAATTCA+AGG | 0.396904 | 5.4:+54163921 | MS.gene88714:CDS |
| AGAATTCTGATTAGATGTAT+TGG | 0.398379 | 5.4:-54160110 | None:intergenic |
| CCAGCAATGCACCAATATTT+GGG | 0.400786 | 5.4:+54163670 | MS.gene88714:CDS |
| TAAATTCACAGGTACGTTGC+TGG | 0.403103 | 5.4:-54161033 | None:intergenic |
| TGACCGGTTATTATAATTAG+AGG | 0.403723 | 5.4:-54159513 | None:intergenic |
| AATACATCTAATCAGAATTC+TGG | 0.405162 | 5.4:+54160112 | MS.gene88714:CDS |
| AAGCTTCTGAGTGGTTTCAT+TGG | 0.405234 | 5.4:-54155844 | None:intergenic |
| AATGCTTAAAGAATGTTCTA+TGG | 0.405927 | 5.4:+54155818 | MS.gene88714:CDS |
| TGACCATAAGGAATGTAGTT+TGG | 0.407257 | 5.4:-54163619 | None:intergenic |
| TGAGCTGAGTACCCGACATT+GGG | 0.409323 | 5.4:-54161193 | None:intergenic |
| GAGACCTGGCACTCATGGAC+GGG | 0.409900 | 5.4:+54158143 | MS.gene88714:CDS |
| AGAACCAAGATCCTCGTTAG+AGG | 0.412989 | 5.4:-54163908 | None:intergenic |
| AATGGCCGGAGCAGTTGATA+TGG | 0.413052 | 5.4:+54164549 | MS.gene88714:CDS |
| TTTCTCCGTTTGCTTCTGCT+GGG | 0.415819 | 5.4:+54161442 | MS.gene88714:CDS |
| GGAAGAGGATATTTCATTCC+CGG | 0.416186 | 5.4:-54163760 | None:intergenic |
| TCATGGTTTCCCGGTGCTGC+TGG | 0.416740 | 5.4:+54159172 | MS.gene88714:CDS |
| TCAGCCTCTAACGAGGATCT+TGG | 0.417338 | 5.4:+54163904 | MS.gene88714:CDS |
| CATAATTCTGCAACAACTGC+CGG | 0.417398 | 5.4:+54163877 | MS.gene88714:CDS |
| CTAGTCACTTCAGCTGAAAC+AGG | 0.418238 | 5.4:-54160160 | None:intergenic |
| ACAAAACCAAAACCATAGTT+TGG | 0.419370 | 5.4:-54161167 | None:intergenic |
| CCCCTCCCTGTCTATCGGCC+GGG | 0.419686 | 5.4:+54163574 | MS.gene88714:CDS |
| CTCAAGAGATAGTATCTAAA+GGG | 0.420171 | 5.4:+54158559 | MS.gene88714:CDS |
| TTAGATGTATTGGTTGGCTT+CGG | 0.425598 | 5.4:-54160100 | None:intergenic |
| GCATTTGTTCCAGGTTTGAA+TGG | 0.428090 | 5.4:-54163784 | None:intergenic |
| CCCTCCCTGTCTATCGGCCG+GGG | 0.431188 | 5.4:+54163575 | MS.gene88714:CDS |
| GGTCCTTCCACTCCATCTGC+TGG | 0.436128 | 5.4:+54158968 | MS.gene88714:CDS |
| CGTGGGAGACCTGGCACTCA+TGG | 0.437057 | 5.4:+54158138 | MS.gene88714:CDS |
| TGCTGGAAACGGAGACATAA+TGG | 0.437509 | 5.4:+54158985 | MS.gene88714:CDS |
| ATGATTCTTTGCCACTCCCT+GGG | 0.439186 | 5.4:-54159426 | None:intergenic |
| TCTGCGCCCATTATTGCTAA+TGG | 0.439658 | 5.4:+54158908 | MS.gene88714:CDS |
| GGGCCGTGGCCAGCCTGAGT+TGG | 0.442772 | 5.4:-54164451 | None:intergenic |
| AGCACCCGGCCGGTAAAATT+GGG | 0.443419 | 5.4:-54161403 | None:intergenic |
| TCTGATAATTCATGGTTTCC+CGG | 0.447544 | 5.4:+54159163 | MS.gene88714:CDS |
| TCCCGGGGCTGCCACAGCTG+GGG | 0.448299 | 5.4:-54163743 | None:intergenic |
| TGTATGGCAGCTTCGGAGAC+TGG | 0.450227 | 5.4:+54159368 | MS.gene88714:intron |
| TTCAAAACTGCAGAAGAAGC+TGG | 0.452353 | 5.4:+54160228 | MS.gene88714:CDS |
| GTGGGAAGTCAACACTCTCT+TGG | 0.457216 | 5.4:+54159211 | MS.gene88714:CDS |
| CCTGCTGCTTGAGTCGCAAT+TGG | 0.460632 | 5.4:-54163517 | None:intergenic |
| AGACCTGGCACTCATGGACG+GGG | 0.461429 | 5.4:+54158144 | MS.gene88714:CDS |
| CTTCCTCTAATTATAATAAC+CGG | 0.463506 | 5.4:+54159510 | MS.gene88714:CDS |
| TCTAATTGCACCAGCAGCAC+CGG | 0.464068 | 5.4:-54159182 | None:intergenic |
| TCCACTCCATCTGCTGGAAA+CGG | 0.465044 | 5.4:+54158974 | MS.gene88714:CDS |
| GCAGTGTGGGTGGCTGCACC+TGG | 0.470071 | 5.4:+54164355 | MS.gene88714:CDS |
| TTTGGAGAAACATGCATGCC+CGG | 0.471298 | 5.4:-54161149 | None:intergenic |
| GGTACGTTGCTGGGTGATTG+TGG | 0.477962 | 5.4:-54161023 | None:intergenic |
| GTTCCAGAAGCCACATTTGT+GGG | 0.477983 | 5.4:-54158932 | None:intergenic |
| TCTCAAGAGATAGTATCTAA+AGG | 0.479490 | 5.4:+54158558 | MS.gene88714:CDS |
| CCCGGGGCTGCCACAGCTGG+GGG | 0.484331 | 5.4:-54163742 | None:intergenic |
| GGAGACCTGGCACTCATGGA+CGG | 0.485058 | 5.4:+54158142 | MS.gene88714:CDS |
| TTAGAATCGAGTGAGGTTGA+TGG | 0.487176 | 5.4:+54161053 | MS.gene88714:CDS |
| CCCGGCCGATAGACAGGGAG+GGG | 0.488135 | 5.4:-54163574 | None:intergenic |
| ACTCAGAAGCTTCTCCTTCA+GGG | 0.488228 | 5.4:+54155855 | MS.gene88714:CDS |
| GCCCCAACTCAGGCTGGCCA+CGG | 0.491759 | 5.4:+54164448 | MS.gene88714:CDS |
| AAATTCACAGGTACGTTGCT+GGG | 0.500149 | 5.4:-54161032 | None:intergenic |
| GAAAATAATGTATACATAAG+TGG | 0.500750 | 5.4:+54163943 | MS.gene88714:CDS |
| TTCTGGAACTATTAGTGGTG+TGG | 0.501628 | 5.4:+54158946 | MS.gene88714:CDS |
| CAGAATATCAAAGAGATCAC+AGG | 0.502371 | 5.4:+54155768 | MS.gene88714:CDS |
| AATACAACAACCGATGTTAG+TGG | 0.503918 | 5.4:+54160364 | MS.gene88714:CDS |
| GTGGCTTCTGGAACTATTAG+TGG | 0.504498 | 5.4:+54158941 | MS.gene88714:CDS |
| TGCATTTCCTCAACAACCTC+AGG | 0.504737 | 5.4:+54163699 | MS.gene88714:CDS |
| ATGTCTCCGTTTCCAGCAGA+TGG | 0.504783 | 5.4:-54158980 | None:intergenic |
| ACTTGATTTGATTTATCGGA+AGG | 0.506118 | 5.4:-54159061 | None:intergenic |
| TTCTGATTAGATGTATTGGT+TGG | 0.506695 | 5.4:-54160106 | None:intergenic |
| CTGTTTCAGCTGAAGTGACT+AGG | 0.508742 | 5.4:+54160161 | MS.gene88714:CDS |
| GAATTGGCCAAGCAATTACT+AGG | 0.509081 | 5.4:+54164618 | MS.gene88714:CDS |
| GTGGAACCACGTGGGAGACC+TGG | 0.513680 | 5.4:+54158129 | MS.gene88714:CDS |
| AACATTGCTGTTGTACTTGG+TGG | 0.513951 | 5.4:-54161469 | None:intergenic |
| ACTTTCGCCCCAACTCAGGC+TGG | 0.514480 | 5.4:+54164442 | MS.gene88714:CDS |
| ATGCACCAATATTTGGGTAA+TGG | 0.517278 | 5.4:+54163676 | MS.gene88714:CDS |
| CAACAGATGCTTCTGGAACT+GGG | 0.518394 | 5.4:+54159086 | MS.gene88714:CDS |
| TTGGCATAACAAGGTGTGTA+GGG | 0.523104 | 5.4:-54163813 | None:intergenic |
| GTACGTTGCTGGGTGATTGT+GGG | 0.524300 | 5.4:-54161022 | None:intergenic |
| TAGAATCGAGTGAGGTTGAT+GGG | 0.524471 | 5.4:+54161054 | MS.gene88714:CDS |
| CCAGGTTTGAATGGTGGAAG+AGG | 0.524484 | 5.4:-54163775 | None:intergenic |
| CCTCTTCCACCATTCAAACC+TGG | 0.525653 | 5.4:+54163775 | MS.gene88714:CDS |
| AACTGGGCCGGCATCGTCAT+CGG | 0.527345 | 5.4:+54159102 | MS.gene88714:CDS |
| CAGGGAGTGGCAAAGAATCA+TGG | 0.527838 | 5.4:+54159428 | MS.gene88714:CDS |
| ATTAAACTCCTGAGTAGCAC+TGG | 0.528251 | 5.4:-54161081 | None:intergenic |
| AAGTTGCTTCTTCAGTGTCA+AGG | 0.529763 | 5.4:-54160207 | None:intergenic |
| TGGGTCATCCAGTGCTACTC+AGG | 0.530725 | 5.4:+54161073 | MS.gene88714:CDS |
| CAAAAGTGTTTGGCATAACA+AGG | 0.531453 | 5.4:-54163822 | None:intergenic |
| CGGTTATTATAATTAGAGGA+AGG | 0.531687 | 5.4:-54159509 | None:intergenic |
| CAGCAAGTTGGCTCTCAGAA+AGG | 0.531743 | 5.4:+54159539 | MS.gene88714:CDS |
| AAAGATTCAAGATAAATCCC+AGG | 0.532474 | 5.4:+54159409 | MS.gene88714:CDS |
| GTTACAGCAATCTCAGACAA+TGG | 0.533382 | 5.4:+54164531 | MS.gene88714:CDS |
| GGGAGCTGGATATACAGTGC+TGG | 0.534413 | 5.4:-54163722 | None:intergenic |
| CCATGAGGTCAAAAGAAAGA+AGG | 0.535938 | 5.4:+54157732 | MS.gene88714:CDS |
| TCTGGAACTATTAGTGGTGT+GGG | 0.536325 | 5.4:+54158947 | MS.gene88714:CDS |
| CAGCAATCTCAGACAATGGC+CGG | 0.536401 | 5.4:+54164535 | MS.gene88714:CDS |
| CATGACTTTCGCCCCAACTC+AGG | 0.537310 | 5.4:+54164438 | MS.gene88714:CDS |
| CCATAAGGAATGTAGTTTGG+AGG | 0.538103 | 5.4:-54163616 | None:intergenic |
| GCAGGGCTCACAATAAAGCT+TGG | 0.538584 | 5.4:-54161263 | None:intergenic |
| ATTGGTGCATTGCTGGAGGT+TGG | 0.539352 | 5.4:-54163663 | None:intergenic |
| AGCCAACTTGCTGTTGTGAC+CGG | 0.540520 | 5.4:-54159529 | None:intergenic |
| GAAGAGGATATTTCATTCCC+GGG | 0.540543 | 5.4:-54163759 | None:intergenic |
| AGGTTATTCATGTCTCGGCC+AGG | 0.541296 | 5.4:-54164373 | None:intergenic |
| ATAATTCTGCAACAACTGCC+GGG | 0.541466 | 5.4:+54163878 | MS.gene88714:CDS |
| AGTTGCTTCTTCAGTGTCAA+GGG | 0.541758 | 5.4:-54160206 | None:intergenic |
| GAATTATGATTATAACCAGC+TGG | 0.541828 | 5.4:-54163862 | None:intergenic |
| TGGGCAGGTTATTCATGTCT+CGG | 0.542207 | 5.4:-54164378 | None:intergenic |
| TGTATACATAAGTGGACAGC+AGG | 0.542439 | 5.4:+54163951 | MS.gene88714:CDS |
| GAGATTGCTGTAACAGCGGA+TGG | 0.546135 | 5.4:-54164522 | None:intergenic |
| CCATCAACACCAGTAACTCA+TGG | 0.549157 | 5.4:+54159467 | MS.gene88714:CDS |
| CAATTCATCTGTGCATGTTG+AGG | 0.549975 | 5.4:-54164601 | None:intergenic |
| TAAGCAGCCTAGTAATTGCT+TGG | 0.551079 | 5.4:-54164625 | None:intergenic |
| AGTTCCAGAAGCCACATTTG+TGG | 0.551364 | 5.4:-54158933 | None:intergenic |
| GAGCGAAGGTTCAGCAGTGT+GGG | 0.552222 | 5.4:+54164342 | MS.gene88714:intron |
| TGAACAGCCGATGACGATGC+CGG | 0.552623 | 5.4:-54159109 | None:intergenic |
| GGAGCTTCTGATACAATAGC+AGG | 0.552787 | 5.4:-54160136 | None:intergenic |
| CATAAGGAATGTAGTTTGGA+GGG | 0.554153 | 5.4:-54163615 | None:intergenic |
| TAAAATTGGGCATAATAACT+AGG | 0.554707 | 5.4:-54161390 | None:intergenic |
| ACCAAGAACAAATTAACTGA+TGG | 0.556301 | 5.4:+54159256 | MS.gene88714:CDS |
| AGCAGCCCCTCCCTGTCTAT+CGG | 0.556659 | 5.4:+54163569 | MS.gene88714:CDS |
| GAATTCTCAAACTCCTCAAG+AGG | 0.559687 | 5.4:+54161509 | MS.gene88714:CDS |
| GGTGATAGATGCTTGTAAAA+GGG | 0.560271 | 5.4:-54164471 | None:intergenic |
| ATATATGGTTCCTCTCCAGC+TGG | 0.560511 | 5.4:+54163847 | MS.gene88714:CDS |
| CAGCTGTCACTCCTTGTGCA+GGG | 0.560555 | 5.4:-54164492 | None:intergenic |
| GACACTGCTTTGCCGCTCGA+AGG | 0.562276 | 5.4:+54161116 | MS.gene88714:CDS |
| TTCTACAACCTTCCACCTCA+AGG | 0.563818 | 5.4:+54164409 | MS.gene88714:CDS |
| CTAATTGCACCAGCAGCACC+GGG | 0.564934 | 5.4:-54159181 | None:intergenic |
| GACCTTCTCTCAGATACGAC+TGG | 0.567820 | 5.4:+54158459 | MS.gene88714:intron |
| GAGGAAGGGCGACTAACTGA+AGG | 0.568207 | 5.4:-54159494 | None:intergenic |
| GCTCGAAGGTCATCAATACC+CGG | 0.569143 | 5.4:+54161130 | MS.gene88714:CDS |
| AACTAGGATCCACTTGTGGT+TGG | 0.569724 | 5.4:-54161374 | None:intergenic |
| AAATTTCCCCGACCACCCCT+AGG | 0.573691 | 5.4:-54158168 | None:intergenic |
| TCCGTTTCCAGCAGATGGAG+TGG | 0.574424 | 5.4:-54158975 | None:intergenic |
| CTGTGGAGGAGCAGCACCCG+AGG | 0.575550 | 5.4:+54160446 | MS.gene88714:CDS |
| TGCTAATGGTCCCACAAATG+TGG | 0.576042 | 5.4:+54158922 | MS.gene88714:CDS |
| GAAAAGTGATTATACCCTGA+AGG | 0.576204 | 5.4:-54155869 | None:intergenic |
| CCAATTGCGACTCAAGCAGC+AGG | 0.579646 | 5.4:+54163517 | MS.gene88714:CDS |
| TCCTACCATATCAACTGCTC+CGG | 0.580621 | 5.4:-54164554 | None:intergenic |
| GTGAGCTGAGTACCCGACAT+TGG | 0.580879 | 5.4:-54161194 | None:intergenic |
| ACTGGCAGCTCTGCTGTGCA+AGG | 0.581876 | 5.4:+54159386 | MS.gene88714:CDS |
| CAGTTGGTTCTAATAAGGAA+TGG | 0.581923 | 5.4:+54160074 | MS.gene88714:intron |
| TGTGCTGACCTTGAGGTGGA+AGG | 0.582949 | 5.4:-54164417 | None:intergenic |
| GTATAGATGCAAACCTCTTG+AGG | 0.583974 | 5.4:-54161522 | None:intergenic |
| TCAAGATAAATCCCAGGGAG+TGG | 0.586427 | 5.4:+54159415 | MS.gene88714:CDS |
| TGTAGAATGAACTAGTGGGC+AGG | 0.587029 | 5.4:-54164393 | None:intergenic |
| AGATGCTTGTAAAAGGGCCG+TGG | 0.587282 | 5.4:-54164465 | None:intergenic |
| GTCTGAGATTGCTGTAACAG+CGG | 0.587907 | 5.4:-54164526 | None:intergenic |
| ACTATCTGGGCCACTAACAT+CGG | 0.588988 | 5.4:-54160374 | None:intergenic |
| GGAGTTTGAGAATTCGGTGT+AGG | 0.589146 | 5.4:-54161501 | None:intergenic |
| TTGGAGAAACATGCATGCCC+GGG | 0.590690 | 5.4:-54161148 | None:intergenic |
| ACTATAGGTCCAACCACAAG+TGG | 0.590710 | 5.4:+54161365 | MS.gene88714:intron |
| CGAAGGTTCAGCAGTGTGGG+TGG | 0.594207 | 5.4:+54164345 | MS.gene88714:CDS |
| AGCATCTATCACCCTGCACA+AGG | 0.595792 | 5.4:+54164481 | MS.gene88714:CDS |
| TGGTGCAATTAGACGCGAAG+TGG | 0.595897 | 5.4:+54159192 | MS.gene88714:CDS |
| GCCGTGGCCAGCCTGAGTTG+GGG | 0.597800 | 5.4:-54164449 | None:intergenic |
| AGATGCTTCTGGAACTGGGC+CGG | 0.597813 | 5.4:+54159090 | MS.gene88714:CDS |
| GTAGCCCCAGCAGAAGCAAA+CGG | 0.598341 | 5.4:-54161447 | None:intergenic |
| GGTTATTATAATTAGAGGAA+GGG | 0.599810 | 5.4:-54159508 | None:intergenic |
| AGTGTCAAGGGCACTTGACA+CGG | 0.602169 | 5.4:-54160194 | None:intergenic |
| TGCTGATAAACATTTCCACC+TGG | 0.603046 | 5.4:-54164577 | None:intergenic |
| ATGATTATAACCAGCTGGAG+AGG | 0.604566 | 5.4:-54163857 | None:intergenic |
| GGAAACCATGAATTATCAGA+TGG | 0.606106 | 5.4:-54159160 | None:intergenic |
| AAGGGAAAAGTTCTGGAACA+AGG | 0.607026 | 5.4:+54158577 | MS.gene88714:CDS |
| TTTCCAGCAGATGGAGTGGA+AGG | 0.607601 | 5.4:-54158971 | None:intergenic |
| TTTGGCATAACAAGGTGTGT+AGG | 0.607865 | 5.4:-54163814 | None:intergenic |
| GCAGTTGATATGGTAGGACC+AGG | 0.609510 | 5.4:+54164559 | MS.gene88714:CDS |
| GGTGCAATTAGACGCGAAGT+GGG | 0.609962 | 5.4:+54159193 | MS.gene88714:CDS |
| TAATGAGATAAATGAACCCC+CGG | 0.610719 | 5.4:-54163592 | None:intergenic |
| AACCGGTCACAACAGCAAGT+TGG | 0.611018 | 5.4:+54159527 | MS.gene88714:CDS |
| TCTCAACAACAGAGAACATG+TGG | 0.611251 | 5.4:+54158110 | MS.gene88714:CDS |
| CGGCCGGGTGCTGATAGTGA+TGG | 0.611489 | 5.4:+54161414 | MS.gene88714:CDS |
| TTATTTCCGATGCAGAGCGA+AGG | 0.614864 | 5.4:+54164328 | MS.gene88714:intron |
| CGACCATCACTATCAGCACC+CGG | 0.616412 | 5.4:-54161417 | None:intergenic |
| TCTGTGACAGGGAAAGATAG+TGG | 0.616898 | 5.4:+54158492 | MS.gene88714:CDS |
| CTCGAAGGTCATCAATACCC+GGG | 0.618591 | 5.4:+54161131 | MS.gene88714:CDS |
| AAGGTTGTAGAATGAACTAG+TGG | 0.621133 | 5.4:-54164398 | None:intergenic |
| TCACTCGATTCTAAATTCAC+AGG | 0.621424 | 5.4:-54161044 | None:intergenic |
| TGCGGCGCAACTTTCTCAGA+GGG | 0.621512 | 5.4:-54158525 | None:intergenic |
| GACCTGGCACTCATGGACGG+GGG | 0.622163 | 5.4:+54158145 | MS.gene88714:CDS |
| TTCTCCGTTTGCTTCTGCTG+GGG | 0.623428 | 5.4:+54161443 | MS.gene88714:CDS |
| CATCACTATCAGCACCCGGC+CGG | 0.624302 | 5.4:-54161413 | None:intergenic |
| CGTTGCTGGGTGATTGTGGG+TGG | 0.624536 | 5.4:-54161019 | None:intergenic |
| CCTCCCTGTCTATCGGCCGG+GGG | 0.626259 | 5.4:+54163576 | MS.gene88714:CDS |
| AATTGGTGTTTGACCTGCGT+TGG | 0.629353 | 5.4:-54163500 | None:intergenic |
| AGAGCGAAGGTTCAGCAGTG+TGG | 0.631190 | 5.4:+54164341 | MS.gene88714:intron |
| CCCCGGCCGATAGACAGGGA+GGG | 0.631996 | 5.4:-54163575 | None:intergenic |
| GAGCTGAGTACCCGACATTG+GGG | 0.632938 | 5.4:-54161192 | None:intergenic |
| TTTGTTCCAGGTTTGAATGG+TGG | 0.634973 | 5.4:-54163781 | None:intergenic |
| AGAATATCAAAGAGATCACA+GGG | 0.635001 | 5.4:+54155769 | MS.gene88714:CDS |
| TGGTGTGGTTACGTCTGAGG+TGG | 0.639789 | 5.4:+54160983 | MS.gene88714:CDS |
| GTTGATATGGTAGGACCAGG+TGG | 0.643857 | 5.4:+54164562 | MS.gene88714:CDS |
| AAGATTCAAGATAAATCCCA+GGG | 0.644749 | 5.4:+54159410 | MS.gene88714:CDS |
| AGGAAGGGCGACTAACTGAA+GGG | 0.645153 | 5.4:-54159493 | None:intergenic |
| GTCACTTCAGCTGAAACAGG+AGG | 0.645840 | 5.4:-54160157 | None:intergenic |
| GTGCTGGCCTGAGGTTGTTG+AGG | 0.647812 | 5.4:-54163706 | None:intergenic |
| TCAGGATATTGAAGAAACTG+TGG | 0.648630 | 5.4:+54160429 | MS.gene88714:CDS |
| ACTCAACAGTCAAAATGGTG+TGG | 0.651300 | 5.4:+54160968 | MS.gene88714:intron |
| GTCATGTGCTGACCTTGAGG+TGG | 0.652386 | 5.4:-54164421 | None:intergenic |
| AAATGGTGTGGTTACGTCTG+AGG | 0.654486 | 5.4:+54160980 | MS.gene88714:CDS |
| TCTTGAGAAGCTGATGAATG+CGG | 0.655571 | 5.4:-54158543 | None:intergenic |
| GGATATACAGTGCTGGCCTG+AGG | 0.656033 | 5.4:-54163715 | None:intergenic |
| CGGGAATTCAGCCTCTAACG+AGG | 0.657122 | 5.4:+54163897 | MS.gene88714:CDS |
| GCCGGAGCAGTTGATATGGT+AGG | 0.657770 | 5.4:+54164553 | MS.gene88714:CDS |
| AAAACTGCAGAAGAAGCTGG+AGG | 0.659003 | 5.4:+54160231 | MS.gene88714:CDS |
| GGATATTGAAGAAACTGTGG+AGG | 0.662155 | 5.4:+54160432 | MS.gene88714:CDS |
| GGGAAGTCAACACTCTCTTG+GGG | 0.668972 | 5.4:+54159213 | MS.gene88714:CDS |
| CAAGTACAACAGCAATGTTG+CGG | 0.671319 | 5.4:+54161473 | MS.gene88714:CDS |
| GTTACTGGTGTTGATGGAGA+GGG | 0.671625 | 5.4:-54159461 | None:intergenic |
| AAGAGGATATTTCATTCCCG+GGG | 0.673908 | 5.4:-54163758 | None:intergenic |
| AGTTACTGGTGTTGATGGAG+AGG | 0.681697 | 5.4:-54159462 | None:intergenic |
| TGTGAATTTAGAATCGAGTG+AGG | 0.682148 | 5.4:+54161046 | MS.gene88714:CDS |
| TAATAACTAGGATCCACTTG+TGG | 0.685868 | 5.4:-54161378 | None:intergenic |
| AGAGAACATGTGGAACCACG+TGG | 0.686207 | 5.4:+54158120 | MS.gene88714:CDS |
| AAATATTGGTGCATTGCTGG+AGG | 0.689276 | 5.4:-54163667 | None:intergenic |
| ATGCGGCGCAACTTTCTCAG+AGG | 0.691669 | 5.4:-54158526 | None:intergenic |
| CTGAAGGAGAAGCTTCTGAG+TGG | 0.692113 | 5.4:-54155853 | None:intergenic |
| GGTGTGGTTACGTCTGAGGT+GGG | 0.692911 | 5.4:+54160984 | MS.gene88714:CDS |
| AGATGTTTCAGAAAATGGTG+TGG | 0.697114 | 5.4:-54160407 | None:intergenic |
| AAAGTCATGTGCTGACCTTG+AGG | 0.702059 | 5.4:-54164424 | None:intergenic |
| AGTATAACATGTTGACGCTG+TGG | 0.702350 | 5.4:-54160265 | None:intergenic |
| GGGTATTGATGACCTTCGAG+CGG | 0.707927 | 5.4:-54161128 | None:intergenic |
| AGGTTGTAGAATGAACTAGT+GGG | 0.716372 | 5.4:-54164397 | None:intergenic |
| AGCTGAGTACCCGACATTGG+GGG | 0.722357 | 5.4:-54161191 | None:intergenic |
| TGAGTGCCAGGTCTCCCACG+TGG | 0.731017 | 5.4:-54158135 | None:intergenic |
| GAGAACATGTGGAACCACGT+GGG | 0.745125 | 5.4:+54158121 | MS.gene88714:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54155714 | 54164639 | 54155714 | ID=MS.gene88714 |
| chr5.4 | mRNA | 54155714 | 54164639 | 54155714 | ID=MS.gene88714.t1;Parent=MS.gene88714 |
| chr5.4 | exon | 54155714 | 54155876 | 54155714 | ID=MS.gene88714.t1.exon1;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54155714 | 54155876 | 54155714 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54157725 | 54157768 | 54157725 | ID=MS.gene88714.t1.exon2;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54157725 | 54157768 | 54157725 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54158108 | 54158201 | 54158108 | ID=MS.gene88714.t1.exon3;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54158108 | 54158201 | 54158108 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54158472 | 54158598 | 54158472 | ID=MS.gene88714.t1.exon4;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54158472 | 54158598 | 54158472 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54158907 | 54159277 | 54158907 | ID=MS.gene88714.t1.exon5;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54158907 | 54159277 | 54158907 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54159378 | 54159560 | 54159378 | ID=MS.gene88714.t1.exon6;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54159378 | 54159560 | 54159378 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54160077 | 54160467 | 54160077 | ID=MS.gene88714.t1.exon7;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54160077 | 54160467 | 54160077 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54160977 | 54161274 | 54160977 | ID=MS.gene88714.t1.exon8;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54160977 | 54161274 | 54160977 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54161372 | 54161530 | 54161372 | ID=MS.gene88714.t1.exon9;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54161372 | 54161530 | 54161372 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54163487 | 54163972 | 54163487 | ID=MS.gene88714.t1.exon10;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54163487 | 54163972 | 54163487 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| chr5.4 | exon | 54164343 | 54164639 | 54164343 | ID=MS.gene88714.t1.exon11;Parent=MS.gene88714.t1 |
| chr5.4 | CDS | 54164343 | 54164639 | 54164343 | ID=cds.MS.gene88714.t1;Parent=MS.gene88714.t1 |
| Gene Sequence |
| Protein sequence |
