AlfalfaGEDB | MS.gene88730

M. sativa cultivar XinJiangDaYe / MS.gene88730

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88730.t1	AFK38898.1	96	378	15	0	1	378	13	390	3.60E-204	720.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88730.t1	Q9FIL7	58.1	377	147	4	3	368	91	467	1.7e-114	414.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88730.t1	I3SF56	96.0	378	15	0	1	378	13	390	2.6e-204	720.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052053	MS.gene88730	0.800774	1.23E-48	-1.69E-46
MS.gene056530	MS.gene88730	0.811018	8.64E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene006416	MS.gene88730	PPI
MS.gene88730	MS.gene013044	PPI
MS.gene88730	MS.gene020408	PPI
MS.gene88730	MS.gene48439	PPI
MS.gene88730	MS.gene006415	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88730.t1	MTR_5g069600	98.677	378	5	0	1	378	77	454	0.0	783
MS.gene88730.t1	MTR_3g462390	72.093	344	92	3	35	374	110	453	0.0	521
MS.gene88730.t1	MTR_3g462390	72.059	340	91	3	39	374	2	341	0.0	512
MS.gene88730.t1	MTR_8g028880	57.227	339	138	3	3	334	81	419	4.53e-141	408
MS.gene88730.t1	MTR_4g115630	53.698	311	142	2	23	332	186	495	2.60e-115	345
MS.gene88730.t1	MTR_8g070910	43.087	311	161	6	24	325	243	546	2.35e-74	242
MS.gene88730.t1	MTR_8g070880	43.243	296	156	4	41	331	617	905	1.47e-72	244
MS.gene88730.t1	MTR_8g063300	37.346	324	197	4	3	323	15	335	9.11e-72	228
MS.gene88730.t1	MTR_2g028580	44.674	291	158	2	28	318	602	889	1.31e-69	235
MS.gene88730.t1	MTR_2g028580	44.674	291	158	2	28	318	614	901	1.57e-69	235

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88730.t1	AT5G58940	62.647	340	119	3	3	334	91	430	3.11e-151	435
MS.gene88730.t1	AT5G58940	62.647	340	119	3	3	334	91	430	3.11e-151	435
MS.gene88730.t1	AT5G58940	62.647	340	119	3	3	334	91	430	3.11e-151	435
MS.gene88730.t1	AT5G58940	62.647	340	119	3	3	334	91	430	3.11e-151	435
MS.gene88730.t1	AT4G00330	61.538	299	110	2	41	334	107	405	6.76e-135	392
MS.gene88730.t1	AT4G00330	61.538	299	110	2	41	334	107	405	6.76e-135	392
MS.gene88730.t1	AT2G11520	54.516	310	138	3	24	332	197	504	2.83e-114	342
MS.gene88730.t1	AT1G79620	43.189	301	159	5	25	318	606	901	2.21e-70	238
MS.gene88730.t1	AT1G79620	43.189	301	159	5	25	318	632	927	2.25e-70	238
MS.gene88730.t1	AT5G54380	43.750	320	164	7	23	337	481	789	1.14e-69	234

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Find 77 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTCTTCACTACCTTGA+TGG	0.361066	5.4:+54408061	None:intergenic
AAGAAGTCCAGCCTCCATCA+AGG	0.583937	5.4:-54408075	MS.gene88730:CDS
AAGAATAAGCATATAACATT+TGG	0.373265	5.4:-54407876	MS.gene88730:CDS
AAGAGTGATGTTTATTCATT+TGG	0.301932	5.4:-54409122	MS.gene88730:CDS
AATCTTAGAGAACATTTAGA+TGG	0.378301	5.4:-54410301	MS.gene88730:intron
AATTATTGATGCAGGTATTC+GGG	0.385391	5.4:-54410058	MS.gene88730:intron
AATTGTGCAGAGGTTCTGTG+GGG	0.771270	5.4:-54407981	MS.gene88730:CDS
ACAAGTGAACAGCTGGGAAC+TGG	0.365075	5.4:-54411065	MS.gene88730:CDS
ACAGATAATCAAATTGGAGA+AGG	0.577711	5.4:-54410996	MS.gene88730:CDS
ACATACCTGTGTACATATGA+AGG	0.613960	5.4:+54409971	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCGCTATATAATGCCA+TGG	-	chr5.4:54410418-54410437	MS.gene88730:CDS	30.0%
AACATTTAGATGGTAAGTTC+TGG	-	chr5.4:54409003-54409022	MS.gene88730:intron	30.0%
AAGTAGTCAATTATTGATGC+AGG	-	chr5.4:54409228-54409247	MS.gene88730:CDS	30.0%
AATTATTGATGCAGGTATTC+GGG	-	chr5.4:54409236-54409255	MS.gene88730:CDS	30.0%
ACAGATAATCAAATTGGAGA+AGG	-	chr5.4:54408298-54408317	MS.gene88730:intron	30.0%
ACGTGAATATGAGTGATATT+TGG	+	chr5.4:54410963-54410982	None:intergenic	30.0%
AGAATTCTTGTTACTACTTC+CGG	+	chr5.4:54408167-54408186	None:intergenic	30.0%
AGATTCAACATATCGTGAAT+CGG	-	chr5.4:54409527-54409546	MS.gene88730:intron	30.0%
CAATTATTGATGCAGGTATT+CGG	-	chr5.4:54409235-54409254	MS.gene88730:CDS	30.0%
CACAAAAGAAACACACAAAA+TGG	+	chr5.4:54408783-54408802	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	54407818	54411498	54407818	ID=MS.gene88730
chr5.4	mRNA	54407818	54411498	54407818	ID=MS.gene88730.t1;Parent=MS.gene88730
chr5.4	exon	54411489	54411498	54411489	ID=MS.gene88730.t1.exon1;Parent=MS.gene88730.t1
chr5.4	CDS	54411489	54411498	54411489	ID=cds.MS.gene88730.t1;Parent=MS.gene88730.t1
chr5.4	exon	54410926	54411170	54410926	ID=MS.gene88730.t1.exon2;Parent=MS.gene88730.t1
chr5.4	CDS	54410926	54411170	54410926	ID=cds.MS.gene88730.t1;Parent=MS.gene88730.t1
chr5.4	exon	54410302	54410467	54410302	ID=MS.gene88730.t1.exon3;Parent=MS.gene88730.t1
chr5.4	CDS	54410302	54410467	54410302	ID=cds.MS.gene88730.t1;Parent=MS.gene88730.t1
chr5.4	exon	54409977	54410066	54409977	ID=MS.gene88730.t1.exon4;Parent=MS.gene88730.t1
chr5.4	CDS	54409977	54410066	54409977	ID=cds.MS.gene88730.t1;Parent=MS.gene88730.t1
chr5.4	exon	54409040	54409335	54409040	ID=MS.gene88730.t1.exon5;Parent=MS.gene88730.t1
chr5.4	CDS	54409040	54409335	54409040	ID=cds.MS.gene88730.t1;Parent=MS.gene88730.t1
chr5.4	exon	54407818	54408153	54407818	ID=MS.gene88730.t1.exon6;Parent=MS.gene88730.t1
chr5.4	CDS	54407818	54408153	54407818	ID=cds.MS.gene88730.t1;Parent=MS.gene88730.t1

Gene Sequence

>MS.gene88730

ATGGTATCATGTAAGTATGATGAAAAACAATATTTTTTTACTTTTTAGTTTATTTGAAATGTTTTTATTGTATTCAACCTCTCGACTGAACTTTGGATTATCAGGATCCTTTTCCTCTGGTACCGGAGGATTAAGAGTTACGACCAAAAATAGATTATGCTCAACCTTTCATGTAAAACTATGATCAAATCATGGCAAAGAGTATATGCATGCAAAGTCATTTCAATATGTACACTACCAGAAATTAGTCATATTGTGACCGGTATAGAGACCGGAAAAAGTAAGTTGAGATTTTCCGATATTGATTAAGATGTATCTTAATTTGCAGCTTCGACTGATTTATCATCCGGAAGTAGTAACAAGAATTCTTCCAAATGGAGATTTTCTTCTTCCTATGCATCATCTAGTACTACAAGTGAACAGCTGGGAACTGGGAATTTCACTTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCTACAGATAATCAAATTGGAGAAGGTGGATTTGGAACTGTCTATAAAGGAAAGCTTAATGATGGAACAATTGTCGCCGTGAAGCGCGCCAAGAAGGTATTTGGCATAGTATAATATTCATCTTTTCAGTTTTTAATCTCCATAACTTGTTCCATTTGTGACTGTAGATGATGAAACTACGCATTTAGGTAGATACCAAGACTCCATCTGTTTAAGCACTTATAGCGTAAACTATAATCGTACAAGTGCTTATGAATAACTATTTCTATAACAAACGATAAAATAAAGGCAAAATGTTTTCATGTCGCTATAAACTATTTTCATATGCTATCCTGAATAGCTTATGAAAATAAGCCTACAAACGTAATAAGTTGTTTCCACAAGCTCTCTCAAAGTTTTAAAAGTGCTTATGTCAGTAGATAAAGTAAAATAAGTCAATCAAGACAAAGTCGAGAGAATTTTTACTAACATATGTCATTAGACAACCATTTTGTGTGTTTCTTTTGTGGAATTTTTACCAATGTAGTGAAGTTTGTTTTTGTGTTTTTATACAGGAAGCTTTGCAGAGTCACCTATATGAATTCAAGAATGAAATATACACTTTATCAAAGATTGAGCACCTGAATCTCGTGAGGTTGTATGGATATTTGGAACATGGAGATGAGAAGCTTATTATTGTTGAGTATGTTGGGAATGGAAATCTTAGAGAACATTTAGATGGTAAGTTCTGGTTTTGCAATATAGTACAAAGGTGTTGGGTATGGCTCGTAGTTACTGATAAATAAGTGGGCAGATTTAATGTAATATGAACCGTAGTATTTACTCAATAATTGGCCGAACTTAGTTACCATACATCATGTGCTAATTTTTTGCATTTTTTCTGTATTTTTATTCTTTAAACTGGGGTTATTGTTCTAACAATAGGAGGCTTAAAAGTAGTCAATTATTGATGCAGGTATTCGGGGTGACGGACTAGAAATTGGTGAGCGTCTAGACATAGCAATTGATATAGCTCATGCAATAACTTACCTTCATATGTACACAGGTATGTCACATAGAAAGCAATAATATGTTACAACATATCTGAATTGTTCATAAATTTTAGTGTATCTAACTGTACAATCAGGGAAGGCTATTAGCAATATCTGTTCATTTAACCTTACATGTCTTGTTCATTTTATCTCAATTCCTCAAATTGTTAATATAATGGTAACAAAATGGTTATCAAATGTAGATTCAACATATCGTGAATCGGATGAACTATTTTCCGAATTGTGAATCAAATTTTATTATGAACTGTAAGATATATTTCTAAGTAAACGTAAACACAAGTGATAGTTATATTAAAAGTTGATATATCATGTATGAACCTCAAAGTAATTGAAGATTCAAGTCATAATTAAATGGAAAATCAAAGTGAATGACTATACAAAGTTGACAAAATAAGTGGCCGAGTACGTTAAGTTTAAGTAGTGATTCATTGGAATAAATCGAGATACATCATAGTGAATCGAGATTCGCCATAATGAATTAGGATTCAATATGATACTCATGTTCACAATCAATACACATTAGGGATTCATATAGATTGAGTGCGACTTTGTATCGAATCAAGATAGAACTCACACGTATAGTAAGATACTGATAACTATTGAATGTCTGAATTTTGTGTTGATTATTTGACAGATAATCCAATTATACATAGAGACATCAAAGCATCAAACATCCTAATTAGTGAGAATCTAAGGGCTAAAGTGGCAGACTTTGGTTTTGCAAGATTGTCTGAAGACCCTGGTGCAACTCATATTTCAACTCAAGTTAAAGGAACAGCTGGATATATGGATCCTGAGTACTTGAGAACTTATCAACTCACAGAAAAGAGTGATGTTTATTCATTTGGCGTATTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAAGAAAATTGATGAGAGAGTCACAATCAGATGGGTATGTATGTTAAATCTCCTATAAGCATTACAAAAAATAATAAAATACAATAGTACTTTTACAACATTTTTTATATGATTAGAAATCGAACTTGGTCCTTCTAGGCAGTTTTATCGATAGTGGACCATGGTGGAAATCCGAAAATTCGCTATATAATGCCATGGTGCCGCCATCATTCACAAATTGGCCATGATGGTTTTAAAAAAATCCATTACGGCCAATACTTTGACTGCACTGCCTCGGGGTTTATAAGCCTCACACACCCTGAGAGCCAACCACTTTCACAATATTTTTTACTACATGAACACATCACTTTGGATTAATCTGTTTTTGTTTCAATTACTTGTGAATAGCAACAAAATTTAATAAATTTTTTAGAAAGTATAAAGTGAATCTTGTGCAGTATCCAATATATTCTAATCATGCTCATTGTACTTTAAAGGCCATATCGTAGGTTTATTGACTCGCCTTCATGTTTTGAAATATGTAGCAGTATAACTTAGAAGATTCATTTTGATCTGTTAATATCAACATGAACTTTTAAGTGCAAAGTCAACAAATTCACGCATTCTAAAAACTACATATTATGGCCAGAGAAGTCAAATTCTGTTTTTGTTCGAAACAAATTTGCATCAAAGTCATCATGTTTAGCTGAAGTAAGAGTCTGACAGTTAAAATTAGTTCCAAATATCACTCATATTCACGTTCCAAATGTCTGCGTGGTGGGGTGTGTGGAGAGTCCTATGTTGGATAATATAAGTGTCAGACATACTTGACTTTACAAGCTAGTTTTGTAGAGTTGAATTGAGTCCGAGCCAAATTTTTAAAACTAAATGGCTGCATTTATTAGATTTTACCCAAACATAATTTGCATGTATGCATGCAGGCAATGAAGATGCTCAAGAACGGAGACGCTGTGTTTGCAATGGATCCAAGACTGAGAAGAAGTCCAGCCTCCATCAAGGTAGTGAAGAAGGTTTTCAAGCTAGCTTTTCAATGCCTGGCACCTTCAATACATTCAAGGCCACCTATGAAGAATTGTGCAGAGGTTCTGTGGGGAATCCGTAAAGATTTTAAAGATGAAACCACTCCTCTTCCTACCTTACCTTCTCATCAATCTGAAAATTTTCCTCAAAGAGAAAAGAATAAGCATATAACATTTGGTATTGAAGATGATGACAGCTACAAATTTTCCTCTGCACCTAATCACATTCATTTATGA

Protein sequence

>MS.gene88730.t1

MVSSSTDLSSGSSNKNSSKWRFSSSYASSSTTSEQLGTGNFTFEEIYKSTAKFSTDNQIGEGGFGTVYKGKLNDGTIVAVKRAKKEALQSHLYEFKNEIYTLSKIEHLNLVRLYGYLEHGDEKLIIVEYVGNGNLREHLDGIRGDGLEIGERLDIAIDIAHAITYLHMYTDNPIIHRDIKASNILISENLRAKVADFGFARLSEDPGATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPVEPKKKIDERVTIRWAMKMLKNGDAVFAMDPRLRRSPASIKVVKKVFKLAFQCLAPSIHSRPPMKNCAEVLWGIRKDFKDETTPLPTLPSHQSENFPQREKNKHITFGIEDDDSYKFSSAPNHIHL