Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88760.t1 | XP_003615587.1 | 94 | 603 | 36 | 0 | 1 | 603 | 1 | 603 | 0.00E+00 | 1165.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88760.t1 | A7LXU3 | 30.4 | 654 | 376 | 20 | 8 | 604 | 30 | 661 | 1.4e-73 | 278.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88760.t1 | G7K6A7 | 94.0 | 603 | 36 | 0 | 1 | 603 | 1 | 603 | 0.0e+00 | 1165.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054102 | MS.gene88760 | -0.81507 | 1.12E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene88760 | -0.800383 | 1.48E-48 | -1.69E-46 |
| MS.gene057823 | MS.gene88760 | -0.803121 | 4.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88760.t1 | MTR_5g069800 | 93.874 | 604 | 37 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1179 |
| MS.gene88760.t1 | MTR_5g069740 | 89.901 | 604 | 49 | 1 | 1 | 604 | 1 | 592 | 0.0 | 1126 |
| MS.gene88760.t1 | MTR_3g462820 | 75.041 | 605 | 149 | 2 | 1 | 605 | 18 | 620 | 0.0 | 953 |
| MS.gene88760.t1 | MTR_6g028090 | 55.556 | 603 | 255 | 5 | 4 | 601 | 27 | 621 | 0.0 | 692 |
| MS.gene88760.t1 | MTR_6g028100 | 55.814 | 602 | 253 | 5 | 4 | 600 | 27 | 620 | 0.0 | 684 |
| MS.gene88760.t1 | MTR_6g028110 | 55.316 | 602 | 256 | 5 | 4 | 600 | 28 | 621 | 0.0 | 682 |
| MS.gene88760.t1 | MTR_6g028110 | 55.184 | 598 | 263 | 4 | 4 | 600 | 28 | 621 | 0.0 | 681 |
| MS.gene88760.t1 | MTR_3g079750 | 54.576 | 601 | 268 | 4 | 4 | 603 | 27 | 623 | 0.0 | 677 |
| MS.gene88760.t1 | MTR_2g030000 | 54.849 | 598 | 265 | 4 | 4 | 600 | 29 | 622 | 0.0 | 671 |
| MS.gene88760.t1 | MTR_6g028120 | 54.153 | 602 | 263 | 5 | 4 | 600 | 8 | 601 | 0.0 | 665 |
| MS.gene88760.t1 | MTR_7g086030 | 53.422 | 599 | 274 | 4 | 4 | 601 | 3 | 597 | 0.0 | 660 |
| MS.gene88760.t1 | MTR_7g086030 | 53.422 | 599 | 274 | 4 | 4 | 601 | 28 | 622 | 0.0 | 659 |
| MS.gene88760.t1 | MTR_7g086010 | 50.552 | 453 | 213 | 2 | 4 | 447 | 28 | 478 | 9.67e-164 | 476 |
| MS.gene88760.t1 | MTR_5g062650 | 25.908 | 633 | 378 | 22 | 15 | 604 | 60 | 644 | 2.98e-39 | 154 |
| MS.gene88760.t1 | MTR_3g074060 | 25.649 | 655 | 365 | 24 | 5 | 602 | 44 | 633 | 5.64e-38 | 150 |
| MS.gene88760.t1 | MTR_5g062370 | 25.307 | 652 | 375 | 26 | 5 | 604 | 50 | 641 | 1.66e-36 | 146 |
| MS.gene88760.t1 | MTR_5g062320 | 24.847 | 652 | 378 | 25 | 5 | 604 | 48 | 639 | 2.51e-36 | 145 |
| MS.gene88760.t1 | MTR_5g062430 | 26.162 | 581 | 342 | 23 | 86 | 604 | 86 | 641 | 5.31e-36 | 144 |
| MS.gene88760.t1 | MTR_7g109390 | 26.049 | 572 | 331 | 25 | 93 | 604 | 86 | 625 | 1.19e-33 | 137 |
| MS.gene88760.t1 | MTR_4g094285 | 26.825 | 630 | 348 | 28 | 5 | 592 | 54 | 612 | 2.87e-33 | 136 |
| MS.gene88760.t1 | MTR_5g069850 | 85.000 | 60 | 9 | 0 | 529 | 588 | 1 | 60 | 1.74e-31 | 116 |
| MS.gene88760.t1 | MTR_1g087240 | 24.169 | 662 | 363 | 27 | 5 | 604 | 37 | 621 | 2.12e-31 | 130 |
| MS.gene88760.t1 | MTR_5g062370 | 25.042 | 595 | 351 | 24 | 5 | 563 | 50 | 585 | 5.54e-30 | 125 |
| MS.gene88760.t1 | MTR_2g008240 | 25.879 | 626 | 359 | 26 | 5 | 592 | 55 | 613 | 7.77e-29 | 122 |
| MS.gene88760.t1 | MTR_1g106860 | 25.043 | 587 | 350 | 28 | 85 | 608 | 73 | 632 | 1.70e-27 | 118 |
| MS.gene88760.t1 | MTR_5g030860 | 24.642 | 629 | 334 | 26 | 5 | 573 | 42 | 590 | 2.13e-27 | 118 |
| MS.gene88760.t1 | MTR_2g034720 | 25.220 | 567 | 355 | 22 | 86 | 603 | 77 | 623 | 4.34e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88760.t1 | AT3G47000 | 69.347 | 597 | 179 | 3 | 5 | 600 | 10 | 603 | 0.0 | 874 |
| MS.gene88760.t1 | AT3G47010 | 67.000 | 600 | 194 | 3 | 5 | 603 | 11 | 607 | 0.0 | 853 |
| MS.gene88760.t1 | AT3G47040 | 67.055 | 601 | 194 | 3 | 5 | 604 | 10 | 607 | 0.0 | 853 |
| MS.gene88760.t1 | AT3G47010 | 66.833 | 600 | 194 | 4 | 5 | 603 | 11 | 606 | 0.0 | 848 |
| MS.gene88760.t1 | AT3G47040 | 64.377 | 626 | 194 | 4 | 5 | 604 | 10 | 632 | 0.0 | 839 |
| MS.gene88760.t1 | AT3G47050 | 68.000 | 600 | 180 | 5 | 5 | 600 | 10 | 601 | 0.0 | 838 |
| MS.gene88760.t1 | AT3G47040 | 62.145 | 634 | 203 | 6 | 5 | 604 | 10 | 640 | 0.0 | 803 |
| MS.gene88760.t1 | AT5G04885 | 54.229 | 603 | 267 | 6 | 2 | 600 | 41 | 638 | 0.0 | 673 |
| MS.gene88760.t1 | AT5G04885 | 54.229 | 603 | 267 | 6 | 2 | 600 | 24 | 621 | 0.0 | 673 |
| MS.gene88760.t1 | AT5G04885 | 54.229 | 603 | 267 | 6 | 2 | 600 | 24 | 621 | 0.0 | 673 |
| MS.gene88760.t1 | AT3G47000 | 71.136 | 440 | 126 | 1 | 5 | 444 | 10 | 448 | 0.0 | 672 |
| MS.gene88760.t1 | AT3G47010 | 68.027 | 441 | 140 | 1 | 5 | 445 | 11 | 450 | 0.0 | 648 |
| MS.gene88760.t1 | AT3G47040 | 67.800 | 441 | 141 | 1 | 5 | 445 | 10 | 449 | 0.0 | 647 |
| MS.gene88760.t1 | AT3G47000 | 69.860 | 428 | 126 | 2 | 174 | 600 | 1 | 426 | 0.0 | 639 |
| MS.gene88760.t1 | AT5G20950 | 52.676 | 598 | 277 | 5 | 4 | 600 | 103 | 695 | 0.0 | 635 |
| MS.gene88760.t1 | AT5G20950 | 52.676 | 598 | 277 | 5 | 4 | 600 | 25 | 617 | 0.0 | 635 |
| MS.gene88760.t1 | AT5G20950 | 52.676 | 598 | 277 | 5 | 4 | 600 | 25 | 617 | 0.0 | 635 |
| MS.gene88760.t1 | AT3G47010 | 66.589 | 431 | 140 | 3 | 174 | 603 | 1 | 428 | 0.0 | 617 |
| MS.gene88760.t1 | AT5G20940 | 51.581 | 601 | 281 | 6 | 2 | 600 | 29 | 621 | 0.0 | 610 |
| MS.gene88760.t1 | AT3G47050 | 67.553 | 376 | 115 | 2 | 5 | 377 | 10 | 381 | 0.0 | 539 |
| MS.gene88760.t1 | AT3G62710 | 46.349 | 630 | 287 | 14 | 4 | 600 | 37 | 648 | 0.0 | 529 |
| MS.gene88760.t1 | AT1G02640 | 25.077 | 646 | 365 | 26 | 9 | 602 | 48 | 626 | 7.86e-33 | 135 |
| MS.gene88760.t1 | AT5G49360 | 24.762 | 630 | 380 | 24 | 11 | 602 | 55 | 628 | 7.17e-31 | 129 |
| MS.gene88760.t1 | AT5G64570 | 25.493 | 608 | 345 | 23 | 5 | 573 | 59 | 597 | 5.17e-30 | 126 |
| MS.gene88760.t1 | AT3G19620 | 24.238 | 656 | 375 | 29 | 5 | 604 | 41 | 630 | 1.15e-29 | 125 |
| MS.gene88760.t1 | AT5G09730 | 24.178 | 608 | 355 | 20 | 4 | 573 | 48 | 587 | 9.34e-28 | 119 |
| MS.gene88760.t1 | AT5G10560 | 24.801 | 629 | 344 | 26 | 5 | 573 | 42 | 601 | 1.03e-26 | 116 |
| MS.gene88760.t1 | AT1G78060 | 24.288 | 597 | 361 | 23 | 11 | 573 | 44 | 583 | 4.82e-26 | 114 |
| MS.gene88760.t1 | AT5G64570 | 24.595 | 618 | 358 | 23 | 5 | 583 | 59 | 607 | 7.15e-26 | 112 |
Find 144 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTATTCCCTCTTGGTTA+TGG | 0.150094 | 5.4:+54883488 | MS.gene88760:CDS |
| GACATGACTTCTTATGTTTC+AGG | 0.158804 | 5.4:+54880549 | MS.gene88760:CDS |
| TTCTTAGCAGTTGCACTATT+TGG | 0.179068 | 5.4:-54879872 | None:intergenic |
| GAACTTGTAATCCCGTTTAA+TGG | 0.201523 | 5.4:+54883206 | MS.gene88760:CDS |
| CCTTATTCCCTCTTGGTTAT+GGG | 0.218882 | 5.4:+54883489 | MS.gene88760:CDS |
| ATGAATTGTTCATATCTTAA+AGG | 0.230899 | 5.4:-54881480 | None:intergenic |
| TCATTACGTTCTATGAATTC+TGG | 0.242355 | 5.4:-54883119 | None:intergenic |
| CCCATAACCAAGAGGGAATA+AGG | 0.250774 | 5.4:-54883489 | None:intergenic |
| AGCAAAGATCTGTCAGTTAA+AGG | 0.273779 | 5.4:-54881612 | None:intergenic |
| TAGTAACAGAACGTTCAATT+TGG | 0.293059 | 5.4:-54879692 | None:intergenic |
| ACCAATGGTGAAATCTTTAA+TGG | 0.307869 | 5.4:-54879724 | None:intergenic |
| GCATCAGTACAATAAATTAT+TGG | 0.314084 | 5.4:-54879968 | None:intergenic |
| TTTAAGATATGAACAATTCA+TGG | 0.320591 | 5.4:+54881482 | MS.gene88760:CDS |
| ACAAGCTGTTTCAACCATTA+TGG | 0.332210 | 5.4:+54880877 | MS.gene88760:CDS |
| GGAGATGGAGGTACAGAAAA+AGG | 0.336684 | 5.4:+54880776 | MS.gene88760:CDS |
| TTTAACTGACAGATCTTTGC+TGG | 0.339407 | 5.4:+54881614 | MS.gene88760:CDS |
| ACACTTGTGATTCTAATATC+TGG | 0.340592 | 5.4:+54883266 | MS.gene88760:CDS |
| GATGAATTATGTCAACCTTA+TGG | 0.341677 | 5.4:+54881314 | MS.gene88760:CDS |
| GGATGGACATTTACTAAGTA+TGG | 0.343875 | 5.4:+54882767 | MS.gene88760:CDS |
| CATGTCAATTCCAGCATTAA+TGG | 0.351444 | 5.4:-54881366 | None:intergenic |
| AGTCATGTCTTGGACAATTT+CGG | 0.358561 | 5.4:-54880535 | None:intergenic |
| CACGGTAACAATAACGTCTA+TGG | 0.361228 | 5.4:+54879995 | MS.gene88760:CDS |
| GTCATCTGATTGGGCTGATA+TGG | 0.362204 | 5.4:+54879901 | MS.gene88760:CDS |
| GGAACTCATGCTGATGATAT+CGG | 0.371576 | 5.4:+54882731 | MS.gene88760:CDS |
| GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | 5.4:-54880612 | None:intergenic |
| CTCTTGGCGTTCTTATTCAA+TGG | 0.379608 | 5.4:-54882695 | None:intergenic |
| AGGGGCTACCCATTTGTGGC+TGG | 0.380723 | 5.4:+54880603 | MS.gene88760:CDS |
| AGGTCTGCAAAGATCCTAGA+TGG | 0.390671 | 5.4:+54880481 | MS.gene88760:intron |
| TCTAATATCTGGAAGACCTT+TGG | 0.393745 | 5.4:+54883277 | MS.gene88760:CDS |
| CCATAACCAAGAGGGAATAA+GGG | 0.403111 | 5.4:-54883488 | None:intergenic |
| GCCAAGAGAATCCTTGTTGC+TGG | 0.408515 | 5.4:+54882710 | MS.gene88760:CDS |
| ATCTGGAAGACCTTTGGTCT+TGG | 0.409437 | 5.4:+54883283 | MS.gene88760:CDS |
| GGGGCTACCCATTTGTGGCT+GGG | 0.413579 | 5.4:+54880604 | MS.gene88760:CDS |
| CTTGTTGCGGCATGGTTGCC+TGG | 0.414148 | 5.4:+54883335 | MS.gene88760:CDS |
| ACAATTCCAGCTCCATTAAA+CGG | 0.414792 | 5.4:-54883218 | None:intergenic |
| TTAGCAGTTGCACTATTTGG+TGG | 0.417251 | 5.4:-54879869 | None:intergenic |
| GAAAGAAAAGCTAGGCTTCA+AGG | 0.425811 | 5.4:+54880964 | MS.gene88760:CDS |
| GGAATCACAGATGTTATCTT+CGG | 0.427323 | 5.4:+54883371 | MS.gene88760:CDS |
| GCATCATCAATCCTGGCTAT+TGG | 0.427539 | 5.4:-54881540 | None:intergenic |
| CATGAATTCACTCCTTCAAC+AGG | 0.428141 | 5.4:-54883458 | None:intergenic |
| GCCATTAAAGATTTCACCAT+TGG | 0.428169 | 5.4:+54879723 | MS.gene88760:CDS |
| CTTCGGGGATCATGACTTCA+AGG | 0.430718 | 5.4:+54883388 | MS.gene88760:CDS |
| AGAAGGAAGTGTCATCTGAT+TGG | 0.432915 | 5.4:+54879891 | MS.gene88760:CDS |
| GTAATCCCGTTTAATGGAGC+TGG | 0.437990 | 5.4:+54883212 | MS.gene88760:CDS |
| CAATTCCAGCTCCATTAAAC+GGG | 0.439264 | 5.4:-54883217 | None:intergenic |
| GTTCTATGAATTCTGGTGTT+GGG | 0.439975 | 5.4:-54883112 | None:intergenic |
| AGTAACAGAACGTTCAATTT+GGG | 0.442472 | 5.4:-54879691 | None:intergenic |
| GAATCACAGATGTTATCTTC+GGG | 0.443316 | 5.4:+54883372 | MS.gene88760:CDS |
| GATGACCCCTTATTCCCTCT+TGG | 0.445616 | 5.4:+54883482 | MS.gene88760:CDS |
| ATGACTTTGAAAGAGAAGAT+TGG | 0.449827 | 5.4:+54879660 | MS.gene88760:CDS |
| TCATAGCATCTTCCCCATCT+AGG | 0.450563 | 5.4:-54880495 | None:intergenic |
| TATTGTACTGATGCTATTCA+CGG | 0.453578 | 5.4:+54879977 | MS.gene88760:CDS |
| TTTCCTCACAACGTTGGCCT+CGG | 0.456574 | 5.4:+54880028 | MS.gene88760:CDS |
| GAAGGAAGTGTCATCTGATT+GGG | 0.460679 | 5.4:+54879892 | MS.gene88760:CDS |
| CAGCTTGATCAACCTGTTGA+AGG | 0.461725 | 5.4:+54883446 | MS.gene88760:CDS |
| AATGGAATGAAAGGTTTACT+AGG | 0.464263 | 5.4:-54882677 | None:intergenic |
| AAATAGTGCAACTGCTAAGA+AGG | 0.470452 | 5.4:+54879874 | MS.gene88760:CDS |
| TCAAAGTCATAAGAGAAAGA+AGG | 0.472645 | 5.4:-54879647 | None:intergenic |
| GTATATGAATCCCTCTGAAC+CGG | 0.475269 | 5.4:+54879605 | MS.gene88760:CDS |
| TGCTAAGGATGCTGTGGGAC+AGG | 0.475726 | 5.4:+54883064 | MS.gene88760:CDS |
| TGAAGCAGTTCGAAAGTCCT+TGG | 0.476629 | 5.4:+54882631 | MS.gene88760:CDS |
| GATATTAGAATCACAAGTGT+TGG | 0.476636 | 5.4:-54883263 | None:intergenic |
| AACTATATTGAATGCTGCTA+AGG | 0.478686 | 5.4:+54883049 | MS.gene88760:CDS |
| GTTGACATCTCTAGTTCAAT+CGG | 0.480782 | 5.4:+54881509 | MS.gene88760:CDS |
| TTCTTATTCAATGGAATGAA+AGG | 0.484516 | 5.4:-54882686 | None:intergenic |
| GAACTCATGCTGATGATATC+GGG | 0.485480 | 5.4:+54882732 | MS.gene88760:CDS |
| TCCAAGGGGCTACCCATTTG+TGG | 0.486656 | 5.4:+54880599 | MS.gene88760:CDS |
| TCTAGTGGCCAGATCACAAT+TGG | 0.486949 | 5.4:+54882791 | MS.gene88760:CDS |
| GTCTCATATTCCAGCTGGAA+TGG | 0.487762 | 5.4:+54880899 | MS.gene88760:CDS |
| CGTTCTATGAATTCTGGTGT+TGG | 0.490481 | 5.4:-54883113 | None:intergenic |
| TTGACATCTCTAGTTCAATC+GGG | 0.490633 | 5.4:+54881510 | MS.gene88760:CDS |
| ATATTAGAATCACAAGTGTT+GGG | 0.490789 | 5.4:-54883262 | None:intergenic |
| ACTCTTCTAAACCAAGTCAT+TGG | 0.496062 | 5.4:-54883419 | None:intergenic |
| GCCACAAATGGGTAGCCCCT+TGG | 0.496947 | 5.4:-54880600 | None:intergenic |
| TCCAGCAACAAGGATTCTCT+TGG | 0.497425 | 5.4:-54882711 | None:intergenic |
| ATTCCATTTCCTTCACTACC+AGG | 0.500207 | 5.4:-54883353 | None:intergenic |
| GATCCACATGGCCCCGTATG+TGG | 0.501410 | 5.4:+54880844 | MS.gene88760:CDS |
| AAGGCTAACCAATTGTGATC+TGG | 0.501758 | 5.4:-54882799 | None:intergenic |
| GATTGGGCTGATATGGTTGA+CGG | 0.503500 | 5.4:+54879908 | MS.gene88760:CDS |
| AAACATAAGAAGTCATGTCT+TGG | 0.503886 | 5.4:-54880545 | None:intergenic |
| CTCAACGGCATCATCAATCC+TGG | 0.505700 | 5.4:-54881547 | None:intergenic |
| TTATGGTCTCATATTCCAGC+TGG | 0.513411 | 5.4:+54880894 | MS.gene88760:CDS |
| ATATCTACTTCCATTAATGC+TGG | 0.513950 | 5.4:+54881356 | MS.gene88760:CDS |
| TAACGATAATCTGAACCATA+AGG | 0.514827 | 5.4:-54881329 | None:intergenic |
| CTGGCGCTTGAATCACGGTT+AGG | 0.517230 | 5.4:+54879941 | MS.gene88760:CDS |
| AGATCTTTGCTGGATACTGT+TGG | 0.518240 | 5.4:+54881624 | MS.gene88760:CDS |
| CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | 5.4:-54880611 | None:intergenic |
| GCTGGATACTGTTGGTTGCA+AGG | 0.519750 | 5.4:+54881632 | MS.gene88760:CDS |
| GAGTTTGACTCCATTCCAGC+TGG | 0.521515 | 5.4:-54880909 | None:intergenic |
| TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | 5.4:+54880310 | MS.gene88760:CDS |
| TTTGTGATTTCTGACTGGGA+GGG | 0.536472 | 5.4:+54881287 | MS.gene88760:CDS |
| AGGGTAAACTACCAATGACT+TGG | 0.544683 | 5.4:+54883408 | MS.gene88760:CDS |
| GTTCTATACAATCCACATAC+GGG | 0.546133 | 5.4:-54880856 | None:intergenic |
| GCTGGAATATGAGACCATAA+TGG | 0.546993 | 5.4:-54880891 | None:intergenic |
| AACCTCCAGAAAATCATCCA+AGG | 0.549496 | 5.4:+54880583 | MS.gene88760:CDS |
| TGTTCTATACAATCCACATA+CGG | 0.551403 | 5.4:-54880857 | None:intergenic |
| TCTTATGTTTCAGGTTTGCA+AGG | 0.552090 | 5.4:+54880558 | MS.gene88760:CDS |
| GTGAAATCTTTAATGGCAGA+AGG | 0.554246 | 5.4:-54879717 | None:intergenic |
| TCGGGTATCAATGTGGAGGA+TGG | 0.556709 | 5.4:+54882750 | MS.gene88760:CDS |
| TCACCTCCACACTCAGCATA+GGG | 0.557235 | 5.4:-54883176 | None:intergenic |
| CATTAATGCTGGAATTGACA+TGG | 0.559007 | 5.4:+54881367 | MS.gene88760:CDS |
| CGAGCTTCAACCGGTTCAGA+GGG | 0.562394 | 5.4:-54879615 | None:intergenic |
| GCGAGCTTCAACCGGTTCAG+AGG | 0.566050 | 5.4:-54879616 | None:intergenic |
| TTGCCTGGTAGTGAAGGAAA+TGG | 0.568579 | 5.4:+54883350 | MS.gene88760:CDS |
| TCCAACAAAATGTCTAGCAC+AGG | 0.571832 | 5.4:-54880756 | None:intergenic |
| TAGAAGCTCTTGTTGCGGCA+TGG | 0.572751 | 5.4:+54883327 | MS.gene88760:CDS |
| AGAAGCTGGCGCTTGAATCA+CGG | 0.580598 | 5.4:+54879936 | MS.gene88760:CDS |
| CACTCTTAAAATCCGCTCAA+CGG | 0.581745 | 5.4:-54881562 | None:intergenic |
| GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | 5.4:+54880607 | MS.gene88760:CDS |
| GAATGCTGCTAAGGATGCTG+TGG | 0.585626 | 5.4:+54883058 | MS.gene88760:CDS |
| GGTCTGCAAAGATCCTAGAT+GGG | 0.587399 | 5.4:+54880482 | MS.gene88760:intron |
| CAGCATGAGTTCCAGCAACA+AGG | 0.588717 | 5.4:-54882721 | None:intergenic |
| ACCTCCAGAAAATCATCCAA+GGG | 0.588939 | 5.4:+54880584 | MS.gene88760:CDS |
| GCTCCGAGGCCAACGTTGTG+AGG | 0.589429 | 5.4:-54880031 | None:intergenic |
| GTCACCTCCACACTCAGCAT+AGG | 0.590732 | 5.4:-54883177 | None:intergenic |
| TGCTTCACCAATAGCAACAA+TGG | 0.593523 | 5.4:-54883153 | None:intergenic |
| ACTATATTTCCTCACAACGT+TGG | 0.594556 | 5.4:+54880022 | MS.gene88760:CDS |
| TTTACTAAGTATGGATCTAG+TGG | 0.597699 | 5.4:+54882776 | MS.gene88760:CDS |
| AAACTTTGTTCCAAGACCAA+AGG | 0.610030 | 5.4:-54883293 | None:intergenic |
| TGGAATGGAGTCAAACTCCA+TGG | 0.613942 | 5.4:+54880914 | MS.gene88760:CDS |
| CATAACCAAGAGGGAATAAG+GGG | 0.624050 | 5.4:-54883487 | None:intergenic |
| ACGTTGGCCTCGGAGCAGCT+AGG | 0.634943 | 5.4:+54880038 | MS.gene88760:CDS |
| AAGCTAGCCCATAACCAAGA+GGG | 0.637396 | 5.4:-54883496 | None:intergenic |
| GCATGGTTGCCTGGTAGTGA+AGG | 0.640507 | 5.4:+54883344 | MS.gene88760:CDS |
| AATCCACATACGGGGCCATG+TGG | 0.640866 | 5.4:-54880847 | None:intergenic |
| GGATTGATGATGCCGTTGAG+CGG | 0.645720 | 5.4:+54881550 | MS.gene88760:CDS |
| AGATGCCTTACAGATACACT+AGG | 0.649143 | 5.4:-54880352 | None:intergenic |
| TGACATCTCTAGTTCAATCG+GGG | 0.650471 | 5.4:+54881511 | MS.gene88760:CDS |
| TAATCAGAAATCGATGACCA+TGG | 0.652717 | 5.4:-54880931 | None:intergenic |
| TTCGGGGATCATGACTTCAA+GGG | 0.656885 | 5.4:+54883389 | MS.gene88760:CDS |
| GTCTGCAAAGATCCTAGATG+GGG | 0.658282 | 5.4:+54880483 | MS.gene88760:CDS |
| GAAGCACCCTATGCTGAGTG+TGG | 0.669444 | 5.4:+54883170 | MS.gene88760:CDS |
| GACATCTCTAGTTCAATCGG+GGG | 0.673392 | 5.4:+54881512 | MS.gene88760:CDS |
| AATGCTGCTAAGGATGCTGT+GGG | 0.685349 | 5.4:+54883059 | MS.gene88760:CDS |
| AATCACAGATGTTATCTTCG+GGG | 0.692931 | 5.4:+54883373 | MS.gene88760:CDS |
| TAAGCTAGCCCATAACCAAG+AGG | 0.693183 | 5.4:-54883497 | None:intergenic |
| TTCTATACAATCCACATACG+GGG | 0.694901 | 5.4:-54880855 | None:intergenic |
| AAAAGTAGAAGCTCTTGTTG+CGG | 0.696874 | 5.4:+54883322 | MS.gene88760:CDS |
| GCACCCTATGCTGAGTGTGG+AGG | 0.697602 | 5.4:+54883173 | MS.gene88760:CDS |
| GATGATATCGGGTATCAATG+TGG | 0.699497 | 5.4:+54882743 | MS.gene88760:CDS |
| CCTCCAGAAAATCATCCAAG+GGG | 0.706643 | 5.4:+54880585 | MS.gene88760:CDS |
| ACACAAACCTAGCTGCTCCG+AGG | 0.725586 | 5.4:-54880045 | None:intergenic |
| GATATCGGGTATCAATGTGG+AGG | 0.736689 | 5.4:+54882746 | MS.gene88760:CDS |
| AGACTTAGAGAAGATCCACA+TGG | 0.753967 | 5.4:+54880832 | MS.gene88760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATACAAAAAAATAAAA+AGG | - | chr5.4:54882821-54882840 | None:intergenic | 10.0% |
| !! | TAAAATAAAAATGATAAGAA+GGG | - | chr5.4:54880076-54880095 | None:intergenic | 10.0% |
| !! | TTAAAATAAAAATGATAAGA+AGG | - | chr5.4:54880077-54880096 | None:intergenic | 10.0% |
| !!! | AAGTATTGATTTTTTTAAAA+CGG | - | chr5.4:54880664-54880683 | None:intergenic | 10.0% |
| !!! | ATTGATTAATTTGATATTTT+TGG | + | chr5.4:54882244-54882263 | MS.gene88760:intron | 10.0% |
| !!! | TTGATTAATTTGATATTTTT+GGG | + | chr5.4:54882245-54882264 | MS.gene88760:intron | 10.0% |
| !! | AAAAATGGTTTATTAAAACT+TGG | + | chr5.4:54882178-54882197 | MS.gene88760:intron | 15.0% |
| !! | AAAATGGTTTATTAAAACTT+GGG | + | chr5.4:54882179-54882198 | MS.gene88760:intron | 15.0% |
| !! | AATCTATGTTAAAATACTAT+GGG | - | chr5.4:54881408-54881427 | None:intergenic | 15.0% |
| !! | TACATTAAAAAAAGTTTATG+AGG | - | chr5.4:54882071-54882090 | None:intergenic | 15.0% |
| !!! | AATTATCAAACGATTTTATA+CGG | - | chr5.4:54881910-54881929 | None:intergenic | 15.0% |
| !!! | ATATAGTTTTTTTTGTTTGA+AGG | + | chr5.4:54882524-54882543 | MS.gene88760:intron | 15.0% |
| !!! | TCTGTTTTTAATTGTTTATA+TGG | - | chr5.4:54882929-54882948 | None:intergenic | 15.0% |
| !!! | TTTTAATTGTTTATATGGAT+AGG | - | chr5.4:54882924-54882943 | None:intergenic | 15.0% |
| !! | AAATGGTTTATTAAAACTTG+GGG | + | chr5.4:54882180-54882199 | MS.gene88760:intron | 20.0% |
| !! | ATACATATAATTAGTACTTC+AGG | + | chr5.4:54880720-54880739 | MS.gene88760:intron | 20.0% |
| !! | ATCATATCAAGTAACAAAAA+TGG | + | chr5.4:54882163-54882182 | MS.gene88760:intron | 20.0% |
| !! | ATCTATGTTAAAATACTATG+GGG | - | chr5.4:54881407-54881426 | None:intergenic | 20.0% |
| !! | ATGAATTGTTCATATCTTAA+AGG | - | chr5.4:54881483-54881502 | None:intergenic | 20.0% |
| !! | CAATCTATGTTAAAATACTA+TGG | - | chr5.4:54881409-54881428 | None:intergenic | 20.0% |
| !! | TAATTGCATAACATTAGAAA+TGG | - | chr5.4:54882866-54882885 | None:intergenic | 20.0% |
| !! | TCAATAACAAATTCAAAAGT+TGG | - | chr5.4:54880381-54880400 | None:intergenic | 20.0% |
| !!! | AAGCTTTGATTTTTCATTAT+TGG | + | chr5.4:54880235-54880254 | MS.gene88760:intron | 20.0% |
| !!! | ATCAAAACAATTTTCATTGA+GGG | + | chr5.4:54882956-54882975 | MS.gene88760:intron | 20.0% |
| !!! | GTAGATATATTTTTTCTTTC+TGG | + | chr5.4:54880986-54881005 | MS.gene88760:intron | 20.0% |
| !!! | TATTGATTTTTTTAAAACGG+TGG | - | chr5.4:54880661-54880680 | None:intergenic | 20.0% |
| !!! | TCAAATAAAGCATTTTGTTA+AGG | + | chr5.4:54881244-54881263 | MS.gene88760:intron | 20.0% |
| !!! | TTTAAGATATGAACAATTCA+TGG | + | chr5.4:54881482-54881501 | MS.gene88760:CDS | 20.0% |
| ! | AACATTCATTCTCTTCATAT+AGG | - | chr5.4:54881104-54881123 | None:intergenic | 25.0% |
| ! | ACACTTATGTTCTAACATAT+TGG | + | chr5.4:54882580-54882599 | MS.gene88760:intron | 25.0% |
| ! | ACGAAATTCATATCAAAAAC+AGG | - | chr5.4:54882370-54882389 | None:intergenic | 25.0% |
| ! | AGAATACTATCAAATTTGTG+TGG | - | chr5.4:54881958-54881977 | None:intergenic | 25.0% |
| ! | ATATTAGAATCACAAGTGTT+GGG | - | chr5.4:54883265-54883284 | None:intergenic | 25.0% |
| ! | ATTGGAAAGATGCAAATTAA+AGG | - | chr5.4:54880100-54880119 | None:intergenic | 25.0% |
| ! | CAAAAAACAACACAATTTGA+TGG | - | chr5.4:54881795-54881814 | None:intergenic | 25.0% |
| ! | CTTATACTACTTTCATTTCT+TGG | + | chr5.4:54879783-54879802 | MS.gene88760:intron | 25.0% |
| ! | GCATCAGTACAATAAATTAT+TGG | - | chr5.4:54879971-54879990 | None:intergenic | 25.0% |
| ! | TTCTTATTCAATGGAATGAA+AGG | - | chr5.4:54882689-54882708 | None:intergenic | 25.0% |
| ! | TTGAAAAAAATATCCCACAT+TGG | - | chr5.4:54882489-54882508 | None:intergenic | 25.0% |
| !! | AAACAGGATTTTAAGCATTT+TGG | - | chr5.4:54882354-54882373 | None:intergenic | 25.0% |
| !! | AACAGGATTTTAAGCATTTT+GGG | - | chr5.4:54882353-54882372 | None:intergenic | 25.0% |
| !! | ATAGTATAATAGAGTACCAA+TGG | - | chr5.4:54879742-54879761 | None:intergenic | 25.0% |
| !! | GATCAAAACAATTTTCATTG+AGG | + | chr5.4:54882955-54882974 | MS.gene88760:intron | 25.0% |
| !!! | GATATTTTGAAAGAAAAGCT+AGG | + | chr5.4:54880956-54880975 | MS.gene88760:CDS | 25.0% |
| !!! | TATTGCGCTTTTAAAATTTC+AGG | + | chr5.4:54883023-54883042 | MS.gene88760:intron | 25.0% |
| !!! | TTTATTTTCGTGAATACTCA+CGG | + | chr5.4:54882315-54882334 | MS.gene88760:intron | 25.0% |
| AAACATAAGAAGTCATGTCT+TGG | - | chr5.4:54880548-54880567 | None:intergenic | 30.0% | |
| AAATCTAAGAGAACTAGATC+AGG | + | chr5.4:54881125-54881144 | MS.gene88760:intron | 30.0% | |
| AACTATATTGAATGCTGCTA+AGG | + | chr5.4:54883049-54883068 | MS.gene88760:CDS | 30.0% | |
| AATGGAATGAAAGGTTTACT+AGG | - | chr5.4:54882680-54882699 | None:intergenic | 30.0% | |
| AATTGATCCATGAGAAACTT+GGG | + | chr5.4:54882124-54882143 | MS.gene88760:intron | 30.0% | |
| ACACTTGTGATTCTAATATC+TGG | + | chr5.4:54883266-54883285 | MS.gene88760:CDS | 30.0% | |
| ACCAATGGTGAAATCTTTAA+TGG | - | chr5.4:54879727-54879746 | None:intergenic | 30.0% | |
| ACTACTTTCATTTCTTGGTA+CGG | + | chr5.4:54879788-54879807 | MS.gene88760:intron | 30.0% | |
| ACTCTCAACTATAGCTATTA+CGG | + | chr5.4:54881932-54881951 | MS.gene88760:intron | 30.0% | |
| ACTTGCATATGTGAATGAAT+AGG | + | chr5.4:54880461-54880480 | MS.gene88760:intron | 30.0% | |
| AGTAACAGAACGTTCAATTT+GGG | - | chr5.4:54879694-54879713 | None:intergenic | 30.0% | |
| AGTTCATTAACACAAGTCAA+AGG | + | chr5.4:54882020-54882039 | MS.gene88760:intron | 30.0% | |
| ATATATTCGTGAACATATGC+AGG | + | chr5.4:54881449-54881468 | MS.gene88760:intron | 30.0% | |
| ATATCTACTTCCATTAATGC+TGG | + | chr5.4:54881356-54881375 | MS.gene88760:CDS | 30.0% | |
| ATTCGACAAAAATGTATGCA+TGG | - | chr5.4:54880692-54880711 | None:intergenic | 30.0% | |
| CATCTAGTACTCACTTTAAA+TGG | + | chr5.4:54881756-54881775 | MS.gene88760:intron | 30.0% | |
| GATATTAGAATCACAAGTGT+TGG | - | chr5.4:54883266-54883285 | None:intergenic | 30.0% | |
| GATGAATTATGTCAACCTTA+TGG | + | chr5.4:54881314-54881333 | MS.gene88760:CDS | 30.0% | |
| GTTCATTAACACAAGTCAAA+GGG | + | chr5.4:54882021-54882040 | MS.gene88760:intron | 30.0% | |
| TAACGATAATCTGAACCATA+AGG | - | chr5.4:54881332-54881351 | None:intergenic | 30.0% | |
| TAAGTGTAGCAATTGAAAGT+TGG | - | chr5.4:54882567-54882586 | None:intergenic | 30.0% | |
| TAGTAACAGAACGTTCAATT+TGG | - | chr5.4:54879695-54879714 | None:intergenic | 30.0% | |
| TATTCTACTCGAAACTGAAA+TGG | + | chr5.4:54881972-54881991 | MS.gene88760:intron | 30.0% | |
| TCAAAGTCATAAGAGAAAGA+AGG | - | chr5.4:54879650-54879669 | None:intergenic | 30.0% | |
| TCATTACGTTCTATGAATTC+TGG | - | chr5.4:54883122-54883141 | None:intergenic | 30.0% | |
| TGTTCTATACAATCCACATA+CGG | - | chr5.4:54880860-54880879 | None:intergenic | 30.0% | |
| TTTACTAAGTATGGATCTAG+TGG | + | chr5.4:54882776-54882795 | MS.gene88760:CDS | 30.0% | |
| ! | ACAGAAAAAGGTGTAAATGA+GGG | + | chr5.4:54880788-54880807 | MS.gene88760:CDS | 30.0% |
| ! | ATGACTTTGAAAGAGAAGAT+TGG | + | chr5.4:54879660-54879679 | MS.gene88760:CDS | 30.0% |
| ! | ATTATTTAGCTCAAGCTTGT+CGG | + | chr5.4:54882279-54882298 | MS.gene88760:intron | 30.0% |
| ! | TACAGAAAAAGGTGTAAATG+AGG | + | chr5.4:54880787-54880806 | MS.gene88760:CDS | 30.0% |
| ! | TATTGTACTGATGCTATTCA+CGG | + | chr5.4:54879977-54879996 | MS.gene88760:CDS | 30.0% |
| ! | TCCTTGTATTTTGCAACTAA+GGG | + | chr5.4:54879831-54879850 | MS.gene88760:intron | 30.0% |
| ! | TTCTGGAAATTGATCGTTTA+TGG | + | chr5.4:54881003-54881022 | MS.gene88760:intron | 30.0% |
| !! | GATTTTAAGCATTTTGGGAA+TGG | - | chr5.4:54882348-54882367 | None:intergenic | 30.0% |
| !! | GCATGTTTGTATTGACTTAT+AGG | + | chr5.4:54880137-54880156 | MS.gene88760:intron | 30.0% |
| !! | TACATTGATAGCGTTTGTAT+AGG | - | chr5.4:54882456-54882475 | None:intergenic | 30.0% |
| !!! | CATCTTTCCAATTTTAGCTA+TGG | + | chr5.4:54880108-54880127 | MS.gene88760:intron | 30.0% |
| !!! | TCCTTGGTTTTGTTGAAAAA+CGG | + | chr5.4:54882647-54882666 | MS.gene88760:CDS | 30.0% |
| AAAAGTAGAAGCTCTTGTTG+CGG | + | chr5.4:54883322-54883341 | MS.gene88760:CDS | 35.0% | |
| AAAATGCATAATCACCTGTG+AGG | + | chr5.4:54880183-54880202 | MS.gene88760:intron | 35.0% | |
| AAACTTTGTTCCAAGACCAA+AGG | - | chr5.4:54883296-54883315 | None:intergenic | 35.0% | |
| AAAGGGAGAAAGGAAGAAAA+AGG | + | chr5.4:54882038-54882057 | MS.gene88760:intron | 35.0% | |
| AAATAGTGCAACTGCTAAGA+AGG | + | chr5.4:54879874-54879893 | MS.gene88760:CDS | 35.0% | |
| AAATGCATAATCACCTGTGA+GGG | + | chr5.4:54880184-54880203 | MS.gene88760:intron | 35.0% | |
| AATCACAGATGTTATCTTCG+GGG | + | chr5.4:54883373-54883392 | MS.gene88760:CDS | 35.0% | |
| ACAATTCCAGCTCCATTAAA+CGG | - | chr5.4:54883221-54883240 | None:intergenic | 35.0% | |
| ACTATATTTCCTCACAACGT+TGG | + | chr5.4:54880022-54880041 | MS.gene88760:CDS | 35.0% | |
| ACTCTTCTAAACCAAGTCAT+TGG | - | chr5.4:54883422-54883441 | None:intergenic | 35.0% | |
| AGCAAAGATCTGTCAGTTAA+AGG | - | chr5.4:54881615-54881634 | None:intergenic | 35.0% | |
| AGTCATGTCTTGGACAATTT+CGG | - | chr5.4:54880538-54880557 | None:intergenic | 35.0% | |
| ATTACCACCGAAGAGATTAT+CGG | + | chr5.4:54881837-54881856 | MS.gene88760:intron | 35.0% | |
| CAATTGATCCATGAGAAACT+TGG | + | chr5.4:54882123-54882142 | MS.gene88760:intron | 35.0% | |
| CATGTCAATTCCAGCATTAA+TGG | - | chr5.4:54881369-54881388 | None:intergenic | 35.0% | |
| CATTAATGCTGGAATTGACA+TGG | + | chr5.4:54881367-54881386 | MS.gene88760:CDS | 35.0% | |
| CCTTTGTCCATAGCTAAAAT+TGG | - | chr5.4:54880118-54880137 | None:intergenic | 35.0% | |
| GAACTTGTAATCCCGTTTAA+TGG | + | chr5.4:54883206-54883225 | MS.gene88760:CDS | 35.0% | |
| GAATCACAGATGTTATCTTC+GGG | + | chr5.4:54883372-54883391 | MS.gene88760:CDS | 35.0% | |
| GACATGACTTCTTATGTTTC+AGG | + | chr5.4:54880549-54880568 | MS.gene88760:CDS | 35.0% | |
| GCCATTAAAGATTTCACCAT+TGG | + | chr5.4:54879723-54879742 | MS.gene88760:CDS | 35.0% | |
| GGAAATTGATCGTTTATGGA+TGG | + | chr5.4:54881007-54881026 | MS.gene88760:intron | 35.0% | |
| GGAATCACAGATGTTATCTT+CGG | + | chr5.4:54883371-54883390 | MS.gene88760:CDS | 35.0% | |
| GGATGGACATTTACTAAGTA+TGG | + | chr5.4:54882767-54882786 | MS.gene88760:CDS | 35.0% | |
| GTAACAGTGAACTAACGAAT+TGG | - | chr5.4:54881875-54881894 | None:intergenic | 35.0% | |
| GTATGTGATCTATCCAATGT+GGG | + | chr5.4:54882473-54882492 | MS.gene88760:intron | 35.0% | |
| GTGAAATCTTTAATGGCAGA+AGG | - | chr5.4:54879720-54879739 | None:intergenic | 35.0% | |
| GTTCTATACAATCCACATAC+GGG | - | chr5.4:54880859-54880878 | None:intergenic | 35.0% | |
| GTTCTATGAATTCTGGTGTT+GGG | - | chr5.4:54883115-54883134 | None:intergenic | 35.0% | |
| TAATCAGAAATCGATGACCA+TGG | - | chr5.4:54880934-54880953 | None:intergenic | 35.0% | |
| TCACAAAATCAGCACTCTAA+AGG | + | chr5.4:54882408-54882427 | MS.gene88760:intron | 35.0% | |
| TCCCTTAGTTGCAAAATACA+AGG | - | chr5.4:54879835-54879854 | None:intergenic | 35.0% | |
| TCTAATATCTGGAAGACCTT+TGG | + | chr5.4:54883277-54883296 | MS.gene88760:CDS | 35.0% | |
| TGTATGTGATCTATCCAATG+TGG | + | chr5.4:54882472-54882491 | MS.gene88760:intron | 35.0% | |
| TTCTATACAATCCACATACG+GGG | - | chr5.4:54880858-54880877 | None:intergenic | 35.0% | |
| TTCTTAGCAGTTGCACTATT+TGG | - | chr5.4:54879875-54879894 | None:intergenic | 35.0% | |
| TTTAACTGACAGATCTTTGC+TGG | + | chr5.4:54881614-54881633 | MS.gene88760:CDS | 35.0% | |
| ! | AAAATCAGCACTCTAAAGGA+TGG | + | chr5.4:54882412-54882431 | MS.gene88760:intron | 35.0% |
| ! | AAGGTCAATTTTCCACTGTA+GGG | + | chr5.4:54881263-54881282 | MS.gene88760:intron | 35.0% |
| ! | ACAAGCTGTTTCAACCATTA+TGG | + | chr5.4:54880877-54880896 | MS.gene88760:CDS | 35.0% |
| ! | CAGAAAAAGGTGTAAATGAG+GGG | + | chr5.4:54880789-54880808 | MS.gene88760:CDS | 35.0% |
| ! | CTCCTTGTATTTTGCAACTA+AGG | + | chr5.4:54879830-54879849 | MS.gene88760:intron | 35.0% |
| ! | GTTGACATCTCTAGTTCAAT+CGG | + | chr5.4:54881509-54881528 | MS.gene88760:CDS | 35.0% |
| ! | TAAGGTCAATTTTCCACTGT+AGG | + | chr5.4:54881262-54881281 | MS.gene88760:intron | 35.0% |
| ! | TCTTCGGTGGTAATTTTTCA+AGG | - | chr5.4:54881831-54881850 | None:intergenic | 35.0% |
| ! | TCTTTTGCCATTGTTGCTAT+TGG | + | chr5.4:54883146-54883165 | MS.gene88760:CDS | 35.0% |
| ! | TTGACATCTCTAGTTCAATC+GGG | + | chr5.4:54881510-54881529 | MS.gene88760:CDS | 35.0% |
| !! | ATTGATAGCGTTTGTATAGG+AGG | - | chr5.4:54882453-54882472 | None:intergenic | 35.0% |
| !! | TCCGTTTTTCAACAAAACCA+AGG | - | chr5.4:54882651-54882670 | None:intergenic | 35.0% |
| !! | TCTTATGTTTCAGGTTTGCA+AGG | + | chr5.4:54880558-54880577 | MS.gene88760:CDS | 35.0% |
| !!! | AGTGCTGATTTTGTGATGAT+CGG | - | chr5.4:54882404-54882423 | None:intergenic | 35.0% |
| !!! | CCAATTTTAGCTATGGACAA+AGG | + | chr5.4:54880115-54880134 | MS.gene88760:intron | 35.0% |
| !!! | GGTTTTGTTGAAAAACGGAA+AGG | + | chr5.4:54882652-54882671 | MS.gene88760:CDS | 35.0% |
| AACACAAGTCAAAGGGAGAA+AGG | + | chr5.4:54882028-54882047 | MS.gene88760:intron | 40.0% | |
| AACCTCCAGAAAATCATCCA+AGG | + | chr5.4:54880583-54880602 | MS.gene88760:CDS | 40.0% | |
| AAGGCTAACCAATTGTGATC+TGG | - | chr5.4:54882802-54882821 | None:intergenic | 40.0% | |
| AATGCATAATCACCTGTGAG+GGG | + | chr5.4:54880185-54880204 | MS.gene88760:intron | 40.0% | |
| ACCTCCAGAAAATCATCCAA+GGG | + | chr5.4:54880584-54880603 | MS.gene88760:CDS | 40.0% | |
| ACTCAACCCGATAATCTCTT+CGG | - | chr5.4:54881847-54881866 | None:intergenic | 40.0% | |
| ACTTGGGAACAAGGATAACA+CGG | + | chr5.4:54882140-54882159 | MS.gene88760:intron | 40.0% | |
| AGACTTAGAGAAGATCCACA+TGG | + | chr5.4:54880832-54880851 | MS.gene88760:CDS | 40.0% | |
| AGATCTTTGCTGGATACTGT+TGG | + | chr5.4:54881624-54881643 | MS.gene88760:CDS | 40.0% | |
| AGATGCCTTACAGATACACT+AGG | - | chr5.4:54880355-54880374 | None:intergenic | 40.0% | |
| AGGGTAAACTACCAATGACT+TGG | + | chr5.4:54883408-54883427 | MS.gene88760:CDS | 40.0% | |
| ATTCCATTTCCTTCACTACC+AGG | - | chr5.4:54883356-54883375 | None:intergenic | 40.0% | |
| CAAGGTAAGTGAAGTTTAGC+TGG | + | chr5.4:54881650-54881669 | MS.gene88760:intron | 40.0% | |
| CAATTCCAGCTCCATTAAAC+GGG | - | chr5.4:54883220-54883239 | None:intergenic | 40.0% | |
| CACGGTAACAATAACGTCTA+TGG | + | chr5.4:54879995-54880014 | MS.gene88760:CDS | 40.0% | |
| CACTCTTAAAATCCGCTCAA+CGG | - | chr5.4:54881565-54881584 | None:intergenic | 40.0% | |
| CATAACCAAGAGGGAATAAG+GGG | - | chr5.4:54883490-54883509 | None:intergenic | 40.0% | |
| CATGAATTCACTCCTTCAAC+AGG | - | chr5.4:54883461-54883480 | None:intergenic | 40.0% | |
| CCATAACCAAGAGGGAATAA+GGG | - | chr5.4:54883491-54883510 | None:intergenic | 40.0% | |
| CCTTATTCCCTCTTGGTTAT+GGG | + | chr5.4:54883489-54883508 | MS.gene88760:CDS | 40.0% | |
| CGTTCTATGAATTCTGGTGT+TGG | - | chr5.4:54883116-54883135 | None:intergenic | 40.0% | |
| CTCTTGGCGTTCTTATTCAA+TGG | - | chr5.4:54882698-54882717 | None:intergenic | 40.0% | |
| GAAAGAAAAGCTAGGCTTCA+AGG | + | chr5.4:54880964-54880983 | MS.gene88760:CDS | 40.0% | |
| GAAATCACAAAACCCTACAG+TGG | - | chr5.4:54881278-54881297 | None:intergenic | 40.0% | |
| GAACTCATGCTGATGATATC+GGG | + | chr5.4:54882732-54882751 | MS.gene88760:CDS | 40.0% | |
| GATGATATCGGGTATCAATG+TGG | + | chr5.4:54882743-54882762 | MS.gene88760:CDS | 40.0% | |
| GCTGGAATATGAGACCATAA+TGG | - | chr5.4:54880894-54880913 | None:intergenic | 40.0% | |
| GGAACTCATGCTGATGATAT+CGG | + | chr5.4:54882731-54882750 | MS.gene88760:CDS | 40.0% | |
| GTATATGAATCCCTCTGAAC+CGG | + | chr5.4:54879605-54879624 | MS.gene88760:CDS | 40.0% | |
| TAGCTCCTAGTGTATCTGTA+AGG | + | chr5.4:54880347-54880366 | MS.gene88760:intron | 40.0% | |
| TCACTTGAACTTAGAGCAAG+TGG | + | chr5.4:54880310-54880329 | MS.gene88760:CDS | 40.0% | |
| TCCAACAAAATGTCTAGCAC+AGG | - | chr5.4:54880759-54880778 | None:intergenic | 40.0% | |
| TGCTTCACCAATAGCAACAA+TGG | - | chr5.4:54883156-54883175 | None:intergenic | 40.0% | |
| TTAAAACTTGGGGAGCAAGT+TGG | + | chr5.4:54882190-54882209 | MS.gene88760:intron | 40.0% | |
| TTACCACCGAAGAGATTATC+GGG | + | chr5.4:54881838-54881857 | MS.gene88760:intron | 40.0% | |
| TTAGCAGTTGCACTATTTGG+TGG | - | chr5.4:54879872-54879891 | None:intergenic | 40.0% | |
| TTATGGTCTCATATTCCAGC+TGG | + | chr5.4:54880894-54880913 | MS.gene88760:CDS | 40.0% | |
| TTTGTGATTTCTGACTGGGA+GGG | + | chr5.4:54881287-54881306 | MS.gene88760:CDS | 40.0% | |
| ! | AGACATTTTGTTGGAGATGG+AGG | + | chr5.4:54880764-54880783 | MS.gene88760:CDS | 40.0% |
| ! | CTGATTTTGTGATGATCGGA+TGG | - | chr5.4:54882400-54882419 | None:intergenic | 40.0% |
| ! | GCTAGACATTTTGTTGGAGA+TGG | + | chr5.4:54880761-54880780 | MS.gene88760:CDS | 40.0% |
| ! | TGACATCTCTAGTTCAATCG+GGG | + | chr5.4:54881511-54881530 | MS.gene88760:CDS | 40.0% |
| ! | TTTTGTGATTTCTGACTGGG+AGG | + | chr5.4:54881286-54881305 | MS.gene88760:CDS | 40.0% |
| ! | TTTTTGATGCGAGCTTCAAC+CGG | - | chr5.4:54879627-54879646 | None:intergenic | 40.0% |
| !! | AGAAGGAAGTGTCATCTGAT+TGG | + | chr5.4:54879891-54879910 | MS.gene88760:CDS | 40.0% |
| !! | AGGGTTTTGTGATTTCTGAC+TGG | + | chr5.4:54881282-54881301 | MS.gene88760:intron | 40.0% |
| !! | GAAGGAAGTGTCATCTGATT+GGG | + | chr5.4:54879892-54879911 | MS.gene88760:CDS | 40.0% |
| !! | GGGTTTTGTGATTTCTGACT+GGG | + | chr5.4:54881283-54881302 | MS.gene88760:intron | 40.0% |
| !! | TTGGATGATTTTCTGGAGGT+TGG | - | chr5.4:54880584-54880603 | None:intergenic | 40.0% |
| AAGCTAGCCCATAACCAAGA+GGG | - | chr5.4:54883499-54883518 | None:intergenic | 45.0% | |
| AATGCTGCTAAGGATGCTGT+GGG | + | chr5.4:54883059-54883078 | MS.gene88760:CDS | 45.0% | |
| AGGTCTGCAAAGATCCTAGA+TGG | + | chr5.4:54880481-54880500 | MS.gene88760:intron | 45.0% | |
| ATAGGAGGAGAGGAGTCTTA+AGG | - | chr5.4:54882438-54882457 | None:intergenic | 45.0% | |
| ATCTGGAAGACCTTTGGTCT+TGG | + | chr5.4:54883283-54883302 | MS.gene88760:CDS | 45.0% | |
| CAGCTTGATCAACCTGTTGA+AGG | + | chr5.4:54883446-54883465 | MS.gene88760:CDS | 45.0% | |
| CCATGAGAAACTTGGGAACA+AGG | + | chr5.4:54882131-54882150 | MS.gene88760:intron | 45.0% | |
| CCCATAACCAAGAGGGAATA+AGG | - | chr5.4:54883492-54883511 | None:intergenic | 45.0% | |
| CCCTTATTCCCTCTTGGTTA+TGG | + | chr5.4:54883488-54883507 | MS.gene88760:CDS | 45.0% | |
| CCTCCAGAAAATCATCCAAG+GGG | + | chr5.4:54880585-54880604 | MS.gene88760:CDS | 45.0% | |
| CCTTGTTCCCAAGTTTCTCA+TGG | - | chr5.4:54882134-54882153 | None:intergenic | 45.0% | |
| GATATCGGGTATCAATGTGG+AGG | + | chr5.4:54882746-54882765 | MS.gene88760:CDS | 45.0% | |
| GATTGGGCTGATATGGTTGA+CGG | + | chr5.4:54879908-54879927 | MS.gene88760:CDS | 45.0% | |
| GCATCATCAATCCTGGCTAT+TGG | - | chr5.4:54881543-54881562 | None:intergenic | 45.0% | |
| GGTCTGCAAAGATCCTAGAT+GGG | + | chr5.4:54880482-54880501 | MS.gene88760:intron | 45.0% | |
| GTAATCCCGTTTAATGGAGC+TGG | + | chr5.4:54883212-54883231 | MS.gene88760:CDS | 45.0% | |
| GTCATCTGATTGGGCTGATA+TGG | + | chr5.4:54879901-54879920 | MS.gene88760:CDS | 45.0% | |
| GTCTCATATTCCAGCTGGAA+TGG | + | chr5.4:54880899-54880918 | MS.gene88760:CDS | 45.0% | |
| GTCTGCAAAGATCCTAGATG+GGG | + | chr5.4:54880483-54880502 | MS.gene88760:CDS | 45.0% | |
| TAAGCTAGCCCATAACCAAG+AGG | - | chr5.4:54883500-54883519 | None:intergenic | 45.0% | |
| TAGCGTTTGTATAGGAGGAG+AGG | - | chr5.4:54882448-54882467 | None:intergenic | 45.0% | |
| TCATAGCATCTTCCCCATCT+AGG | - | chr5.4:54880498-54880517 | None:intergenic | 45.0% | |
| TCCAGCAACAAGGATTCTCT+TGG | - | chr5.4:54882714-54882733 | None:intergenic | 45.0% | |
| TCGTGAACATATGCAGGTGA+TGG | + | chr5.4:54881455-54881474 | MS.gene88760:intron | 45.0% | |
| TCTAGTGGCCAGATCACAAT+TGG | + | chr5.4:54882791-54882810 | MS.gene88760:CDS | 45.0% | |
| TGAAGCAGTTCGAAAGTCCT+TGG | + | chr5.4:54882631-54882650 | MS.gene88760:CDS | 45.0% | |
| TGGAATGGAGTCAAACTCCA+TGG | + | chr5.4:54880914-54880933 | MS.gene88760:CDS | 45.0% | |
| TTCGGGGATCATGACTTCAA+GGG | + | chr5.4:54883389-54883408 | MS.gene88760:CDS | 45.0% | |
| ! | GACATCTCTAGTTCAATCGG+GGG | + | chr5.4:54881512-54881531 | MS.gene88760:CDS | 45.0% |
| ! | GCCTGTGCTAGACATTTTGT+TGG | + | chr5.4:54880755-54880774 | MS.gene88760:CDS | 45.0% |
| ! | GGAGATGGAGGTACAGAAAA+AGG | + | chr5.4:54880776-54880795 | MS.gene88760:CDS | 45.0% |
| ! | TAGCCCCTTGGATGATTTTC+TGG | - | chr5.4:54880591-54880610 | None:intergenic | 45.0% |
| ! | TTGCCTGGTAGTGAAGGAAA+TGG | + | chr5.4:54883350-54883369 | MS.gene88760:CDS | 45.0% |
| AAATGCACATGACCCCTCAC+AGG | - | chr5.4:54880200-54880219 | None:intergenic | 50.0% | |
| AGAAGCTGGCGCTTGAATCA+CGG | + | chr5.4:54879936-54879955 | MS.gene88760:CDS | 50.0% | |
| CAACCCGATAATCTCTTCGG+TGG | - | chr5.4:54881844-54881863 | None:intergenic | 50.0% | |
| CAGCATGAGTTCCAGCAACA+AGG | - | chr5.4:54882724-54882743 | None:intergenic | 50.0% | |
| CTCAACGGCATCATCAATCC+TGG | - | chr5.4:54881550-54881569 | None:intergenic | 50.0% | |
| CTTCGGGGATCATGACTTCA+AGG | + | chr5.4:54883388-54883407 | MS.gene88760:CDS | 50.0% | |
| GAATGCTGCTAAGGATGCTG+TGG | + | chr5.4:54883058-54883077 | MS.gene88760:CDS | 50.0% | |
| GAGTTTGACTCCATTCCAGC+TGG | - | chr5.4:54880912-54880931 | None:intergenic | 50.0% | |
| GATGACCCCTTATTCCCTCT+TGG | + | chr5.4:54883482-54883501 | MS.gene88760:CDS | 50.0% | |
| GCCAAGAGAATCCTTGTTGC+TGG | + | chr5.4:54882710-54882729 | MS.gene88760:CDS | 50.0% | |
| TAGAAGCTCTTGTTGCGGCA+TGG | + | chr5.4:54883327-54883346 | MS.gene88760:CDS | 50.0% | |
| TCACCTCCACACTCAGCATA+GGG | - | chr5.4:54883179-54883198 | None:intergenic | 50.0% | |
| TCGGGTATCAATGTGGAGGA+TGG | + | chr5.4:54882750-54882769 | MS.gene88760:CDS | 50.0% | |
| ! | CCCCTTGGATGATTTTCTGG+AGG | - | chr5.4:54880588-54880607 | None:intergenic | 50.0% |
| ! | GCTGGATACTGTTGGTTGCA+AGG | + | chr5.4:54881632-54881651 | MS.gene88760:CDS | 50.0% |
| ! | GGTTGACGGTTTTCAGAAGC+TGG | + | chr5.4:54879922-54879941 | MS.gene88760:CDS | 50.0% |
| ! | TTTCCTCACAACGTTGGCCT+CGG | + | chr5.4:54880028-54880047 | MS.gene88760:CDS | 50.0% |
| !! | GGATTGATGATGCCGTTGAG+CGG | + | chr5.4:54881550-54881569 | MS.gene88760:CDS | 50.0% |
| AATCCACATACGGGGCCATG+TGG | - | chr5.4:54880850-54880869 | None:intergenic | 55.0% | |
| ACACAAACCTAGCTGCTCCG+AGG | - | chr5.4:54880048-54880067 | None:intergenic | 55.0% | |
| CCTACCTCCCAGCCACAAAT+GGG | - | chr5.4:54880614-54880633 | None:intergenic | 55.0% | |
| CTGGCGCTTGAATCACGGTT+AGG | + | chr5.4:54879941-54879960 | MS.gene88760:CDS | 55.0% | |
| GTCACCTCCACACTCAGCAT+AGG | - | chr5.4:54883180-54883199 | None:intergenic | 55.0% | |
| TCCAAGGGGCTACCCATTTG+TGG | + | chr5.4:54880599-54880618 | MS.gene88760:CDS | 55.0% | |
| TGCTAAGGATGCTGTGGGAC+AGG | + | chr5.4:54883064-54883083 | MS.gene88760:CDS | 55.0% | |
| ! | CGAGCTTCAACCGGTTCAGA+GGG | - | chr5.4:54879618-54879637 | None:intergenic | 55.0% |
| ! | GAAGCACCCTATGCTGAGTG+TGG | + | chr5.4:54883170-54883189 | MS.gene88760:CDS | 55.0% |
| ! | GCATGGTTGCCTGGTAGTGA+AGG | + | chr5.4:54883344-54883363 | MS.gene88760:CDS | 55.0% |
| AGGGGCTACCCATTTGTGGC+TGG | + | chr5.4:54880603-54880622 | MS.gene88760:CDS | 60.0% | |
| CCCATTTGTGGCTGGGAGGT+AGG | + | chr5.4:54880611-54880630 | MS.gene88760:intron | 60.0% | |
| CTTGTTGCGGCATGGTTGCC+TGG | + | chr5.4:54883335-54883354 | MS.gene88760:CDS | 60.0% | |
| GATCCACATGGCCCCGTATG+TGG | + | chr5.4:54880844-54880863 | MS.gene88760:CDS | 60.0% | |
| GCACCCTATGCTGAGTGTGG+AGG | + | chr5.4:54883173-54883192 | MS.gene88760:CDS | 60.0% | |
| GCCACAAATGGGTAGCCCCT+TGG | - | chr5.4:54880603-54880622 | None:intergenic | 60.0% | |
| GCCTACCTCCCAGCCACAAA+TGG | - | chr5.4:54880615-54880634 | None:intergenic | 60.0% | |
| GCTACCCATTTGTGGCTGGG+AGG | + | chr5.4:54880607-54880626 | MS.gene88760:CDS | 60.0% | |
| GGGGCTACCCATTTGTGGCT+GGG | + | chr5.4:54880604-54880623 | MS.gene88760:CDS | 60.0% | |
| TGGCTGGGAGGTAGGCAGAT+AGG | + | chr5.4:54880619-54880638 | MS.gene88760:intron | 60.0% | |
| ! | GCGAGCTTCAACCGGTTCAG+AGG | - | chr5.4:54879619-54879638 | None:intergenic | 60.0% |
| !! | CGGGGGAAGTACCAATAGCC+AGG | + | chr5.4:54881529-54881548 | MS.gene88760:CDS | 60.0% |
| GCTCCGAGGCCAACGTTGTG+AGG | - | chr5.4:54880034-54880053 | None:intergenic | 65.0% | |
| ! | ACGTTGGCCTCGGAGCAGCT+AGG | + | chr5.4:54880038-54880057 | MS.gene88760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54879594 | 54883544 | 54879594 | ID=MS.gene88760 |
| chr5.4 | mRNA | 54879594 | 54883544 | 54879594 | ID=MS.gene88760.t1;Parent=MS.gene88760 |
| chr5.4 | exon | 54879594 | 54879744 | 54879594 | ID=MS.gene88760.t1.exon1;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54879594 | 54879744 | 54879594 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54879852 | 54880059 | 54879852 | ID=MS.gene88760.t1.exon2;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54879852 | 54880059 | 54879852 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54880273 | 54880363 | 54880273 | ID=MS.gene88760.t1.exon3;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54880273 | 54880363 | 54880273 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54880483 | 54880628 | 54880483 | ID=MS.gene88760.t1.exon4;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54880483 | 54880628 | 54880483 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54880742 | 54880985 | 54880742 | ID=MS.gene88760.t1.exon5;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54880742 | 54880985 | 54880742 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54881284 | 54881388 | 54881284 | ID=MS.gene88760.t1.exon6;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54881284 | 54881388 | 54881284 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54881471 | 54881653 | 54881471 | ID=MS.gene88760.t1.exon7;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54881471 | 54881653 | 54881471 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54882611 | 54882812 | 54882611 | ID=MS.gene88760.t1.exon8;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54882611 | 54882812 | 54882611 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| chr5.4 | exon | 54883045 | 54883544 | 54883045 | ID=MS.gene88760.t1.exon9;Parent=MS.gene88760.t1 |
| chr5.4 | CDS | 54883045 | 54883544 | 54883045 | ID=cds.MS.gene88760.t1;Parent=MS.gene88760.t1 |
| Gene Sequence |
| Protein sequence |
