Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88778.t1 | XP_003615614.1 | 96.5 | 226 | 8 | 0 | 1 | 226 | 1 | 226 | 6.00E-104 | 387.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88778.t1 | Q9SD61 | 70.9 | 165 | 48 | 0 | 1 | 165 | 1 | 165 | 3.4e-63 | 243.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88778.t1 | G7K6D4 | 96.5 | 226 | 8 | 0 | 1 | 226 | 1 | 226 | 4.3e-104 | 387.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007227 | MS.gene88778 | PPI |
| MS.gene050322 | MS.gene88778 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88778.t1 | MTR_5g070100 | 89.663 | 416 | 20 | 1 | 1 | 416 | 1 | 393 | 0.0 | 697 |
| MS.gene88778.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 2.03e-11 | 66.2 |
| MS.gene88778.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 2.33e-11 | 65.9 |
| MS.gene88778.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 2.35e-11 | 65.9 |
| MS.gene88778.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 3.78e-11 | 65.5 |
| MS.gene88778.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 3.99e-11 | 65.5 |
| MS.gene88778.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 7.20e-11 | 64.3 |
| MS.gene88778.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 7.54e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88778.t1 | AT3G47120 | 66.827 | 208 | 67 | 1 | 1 | 206 | 1 | 208 | 2.29e-96 | 291 |
| MS.gene88778.t1 | AT3G47120 | 52.113 | 355 | 152 | 8 | 1 | 341 | 1 | 351 | 8.60e-95 | 288 |
| MS.gene88778.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 321 | 446 | 5.51e-13 | 70.9 |
| MS.gene88778.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 5.84e-13 | 70.9 |
| MS.gene88778.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 7.55e-13 | 70.5 |
| MS.gene88778.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 8.64e-13 | 70.5 |
| MS.gene88778.t1 | AT5G19960 | 35.443 | 79 | 50 | 1 | 34 | 112 | 5 | 82 | 1.65e-11 | 65.5 |
| MS.gene88778.t1 | AT5G64200 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 5.83e-11 | 63.5 |
| MS.gene88778.t1 | AT5G64200 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 5.83e-11 | 63.5 |
| MS.gene88778.t1 | AT1G60900 | 38.889 | 72 | 44 | 0 | 38 | 109 | 377 | 448 | 8.92e-11 | 64.3 |
Find 105 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTTCAGGTAGGATTATT+AGG | 0.141562 | 5.4:-55042060 | MS.gene88778:CDS |
| GCCATACCTTCTTTCTTTAT+TGG | 0.146639 | 5.4:+55039150 | None:intergenic |
| AGGCGGGATGTTGATGATTT+TGG | 0.164510 | 5.4:-55038659 | MS.gene88778:CDS |
| AGGCGGGATGTTGATGATTT+TGG | 0.164510 | 5.4:-55038728 | MS.gene88778:CDS |
| CTGAATGGAGCTCAGGTTTC+AGG | 0.203125 | 5.4:-55042073 | MS.gene88778:CDS |
| CCATACCTTCTTTCTTTATT+GGG | 0.216137 | 5.4:+55039151 | None:intergenic |
| GTCAGAATCATTTCTTCCTT+TGG | 0.232167 | 5.4:+55038490 | None:intergenic |
| CTGAGCCAAGAGATCATAAA+AGG | 0.251327 | 5.4:-55038838 | MS.gene88778:CDS |
| GAATCTCTATCTCTAGTTTC+TGG | 0.272752 | 5.4:+55039106 | None:intergenic |
| CTCTCTTCTATCATTTCTCT+TGG | 0.283326 | 5.4:+55039039 | None:intergenic |
| CTTCTATCATTTCTCTTGGA+TGG | 0.294203 | 5.4:+55039043 | None:intergenic |
| CTGATCTTAGAGAAGATAAA+AGG | 0.316160 | 5.4:-55038688 | MS.gene88778:CDS |
| CAAGGAATGGTTATGATGAT+AGG | 0.321506 | 5.4:-55038865 | MS.gene88778:CDS |
| CTCCTTTGCCGATCTTCTCT+TGG | 0.324973 | 5.4:+55038902 | None:intergenic |
| CACGAGTACACTCCCCTCTT+TGG | 0.331022 | 5.4:+55041945 | None:intergenic |
| GGTTTCAGGTAGGATTATTA+GGG | 0.354453 | 5.4:-55042059 | MS.gene88778:CDS |
| TTCTATCATTTCTCTTGGAT+GGG | 0.358687 | 5.4:+55039044 | None:intergenic |
| TCTCAATTGCCATTACCTTC+TGG | 0.363694 | 5.4:+55038448 | None:intergenic |
| TTGTAGAGAGCTGCAAATAC+TGG | 0.385773 | 5.4:-55039223 | MS.gene88778:intron |
| ACATAAGCGAAGACGCTTCA+TGG | 0.386973 | 5.4:-55042839 | MS.gene88778:CDS |
| AAGAGGAAGCAAAGCAGAAA+AGG | 0.403194 | 5.4:-55041994 | MS.gene88778:CDS |
| GGAGGCCCGTGGTGTTTGTC+GGG | 0.415526 | 5.4:-55041972 | MS.gene88778:CDS |
| CTAGTTTCTGGAATACGATC+TGG | 0.419183 | 5.4:+55039118 | None:intergenic |
| CAAGAGAAACACACGGTAGC+AGG | 0.422317 | 5.4:-55038628 | MS.gene88778:CDS |
| GGGAGGCCCGTGGTGTTTGT+CGG | 0.430962 | 5.4:-55041973 | MS.gene88778:CDS |
| GGTCAAGAGAAGATCATGAT+AGG | 0.447825 | 5.4:-55038559 | MS.gene88778:CDS |
| TCATCAACATCCCGCCTACT+TGG | 0.448056 | 5.4:+55038665 | None:intergenic |
| TCATCAACATCCCGCCTACT+TGG | 0.449138 | 5.4:+55038734 | None:intergenic |
| TGATCAGAATCTCTTGACTT+AGG | 0.458844 | 5.4:+55038773 | None:intergenic |
| CCCAATAAAGAAAGAAGGTA+TGG | 0.462602 | 5.4:-55039151 | MS.gene88778:CDS |
| GGTGATAACGGGATTGCAAA+AGG | 0.465841 | 5.4:-55039196 | MS.gene88778:CDS |
| CTTGTAAGAGACAAAGGTAC+TGG | 0.467775 | 5.4:-55042491 | MS.gene88778:CDS |
| GAGAGCTGCAAATACTGGTT+GGG | 0.469783 | 5.4:-55039218 | MS.gene88778:CDS |
| ATACTGGTTGGGGTGATAAC+GGG | 0.475497 | 5.4:-55039207 | MS.gene88778:CDS |
| AATACTGGTTGGGGTGATAA+CGG | 0.477693 | 5.4:-55039208 | MS.gene88778:CDS |
| GGGGAGTGTACTCGTGGAGC+TGG | 0.482249 | 5.4:-55041938 | MS.gene88778:CDS |
| TCATCATCTTGATAGTCTCT+TGG | 0.486677 | 5.4:+55038938 | None:intergenic |
| TTCTTTGATCTTCATATGCT+AGG | 0.490743 | 5.4:+55042447 | None:intergenic |
| GTGATAACGGGATTGCAAAA+GGG | 0.493742 | 5.4:-55039195 | MS.gene88778:CDS |
| GAGATCATAAAAGGGAAGAC+AGG | 0.495058 | 5.4:-55038829 | MS.gene88778:CDS |
| AGATGGCGATAGTAAATTTG+TGG | 0.496993 | 5.4:-55038996 | MS.gene88778:CDS |
| GGAGAGAAGAAATGAGATCA+AGG | 0.498844 | 5.4:-55038883 | MS.gene88778:CDS |
| TGCGCTTCACCAGTGTTAGC+GGG | 0.500198 | 5.4:+55042895 | None:intergenic |
| GATGGAGGAGGAAGATGAAG+AGG | 0.505631 | 5.4:-55042011 | MS.gene88778:CDS |
| AGATAATCTGAATGGAGCTC+AGG | 0.511594 | 5.4:-55042080 | MS.gene88778:CDS |
| CAAAGGTACTGGAAAATCAA+AGG | 0.512659 | 5.4:-55042480 | MS.gene88778:CDS |
| AGATAAAAGGCCAAGTAGGC+GGG | 0.513506 | 5.4:-55038675 | MS.gene88778:CDS |
| TTTGTCGGGCTTTCCAAAGA+GGG | 0.528141 | 5.4:-55041958 | MS.gene88778:CDS |
| TTCAGGTAGGATTATTAGGG+TGG | 0.532632 | 5.4:-55042056 | MS.gene88778:CDS |
| GATGGCGATAGTAAATTTGT+GGG | 0.534981 | 5.4:-55038995 | MS.gene88778:CDS |
| AAGGAATGGTTATGATGATA+GGG | 0.535419 | 5.4:-55038864 | MS.gene88778:CDS |
| AGAAGCACTAATCTTGCTGT+TGG | 0.536662 | 5.4:-55042428 | MS.gene88778:intron |
| AAAGGTACTGGAAAATCAAA+GGG | 0.537719 | 5.4:-55042479 | MS.gene88778:CDS |
| CTGACCAAAGAGAAGAAAAG+AGG | 0.537828 | 5.4:-55038472 | MS.gene88778:CDS |
| TAAATATAAGAAGATGGAGG+AGG | 0.542000 | 5.4:-55042023 | MS.gene88778:CDS |
| TGATAACGGGATTGCAAAAG+GGG | 0.543460 | 5.4:-55039194 | MS.gene88778:CDS |
| GAGAGGAAAAGATGTTGCGA+AGG | 0.544047 | 5.4:-55039021 | MS.gene88778:CDS |
| TGTTGATAAATATAAGAAGA+TGG | 0.544702 | 5.4:-55042029 | MS.gene88778:CDS |
| ATGCGCTTCACCAGTGTTAG+CGG | 0.545822 | 5.4:+55042894 | None:intergenic |
| GGGGATAATGACAAATATGA+TGG | 0.546189 | 5.4:-55039175 | MS.gene88778:CDS |
| GGTGATATCCAGGTATGGGG+AGG | 0.553611 | 5.4:-55042528 | MS.gene88778:intron |
| AGAGGAAGCAAAGCAGAAAA+GGG | 0.556582 | 5.4:-55041993 | MS.gene88778:CDS |
| AACAATTGCCAAGAGAAGAT+CGG | 0.556675 | 5.4:-55038910 | MS.gene88778:CDS |
| AGATAAAAGACCAAGTAGGC+GGG | 0.557243 | 5.4:-55038744 | MS.gene88778:CDS |
| CACACGGTAGCAGGGAAGAG+AGG | 0.558042 | 5.4:-55038619 | MS.gene88778:CDS |
| ATGGTCCCAATAAAGAAAGA+AGG | 0.560069 | 5.4:-55039156 | MS.gene88778:CDS |
| AGAGAGCTGCAAATACTGGT+TGG | 0.561675 | 5.4:-55039219 | MS.gene88778:CDS |
| GAGAAGAAAAGAGGTCCAGA+AGG | 0.562940 | 5.4:-55038463 | MS.gene88778:CDS |
| ATTCCCTTCGATTTCACCGA+GGG | 0.563908 | 5.4:-55042774 | MS.gene88778:CDS |
| GAAGAAATGAGATCAAGGAA+TGG | 0.564228 | 5.4:-55038878 | MS.gene88778:CDS |
| GAGAAGATAAAAGGCCAAGT+AGG | 0.565298 | 5.4:-55038679 | MS.gene88778:CDS |
| AAGAGAAACACACGGTAGCA+GGG | 0.569250 | 5.4:-55038627 | MS.gene88778:CDS |
| TGAGCCAAGAGATCATAAAA+GGG | 0.569269 | 5.4:-55038837 | MS.gene88778:CDS |
| ATTAATCTTGTAAGAGACAA+AGG | 0.574059 | 5.4:-55042497 | MS.gene88778:CDS |
| AAAAGAGGTCCAGAAGGTAA+TGG | 0.576819 | 5.4:-55038457 | None:intergenic |
| GTTTGTCGGGCTTTCCAAAG+AGG | 0.577376 | 5.4:-55041959 | MS.gene88778:CDS |
| ATCACCCTCGGTGAAATCGA+AGG | 0.587004 | 5.4:+55042770 | None:intergenic |
| AGAGCTGCAAATACTGGTTG+GGG | 0.591634 | 5.4:-55039217 | MS.gene88778:CDS |
| AAGATAAAAGGCCAAGTAGG+CGG | 0.592227 | 5.4:-55038676 | MS.gene88778:CDS |
| TGTGTCACAGATAATCTGAA+TGG | 0.593295 | 5.4:-55042088 | MS.gene88778:intron |
| CAGAGCCCGTGAAAATGAGA+TGG | 0.593419 | 5.4:-55039077 | MS.gene88778:CDS |
| GAGAAGATAAAAGACCAAGT+AGG | 0.594924 | 5.4:-55038748 | MS.gene88778:CDS |
| TGCCAAGAGAAGATCGGCAA+AGG | 0.602431 | 5.4:-55038904 | MS.gene88778:CDS |
| TTTGGTGATATCCAGGTATG+GGG | 0.602610 | 5.4:-55042531 | MS.gene88778:intron |
| AAGATGTTGCGAAGGCAAGA+TGG | 0.607367 | 5.4:-55039013 | MS.gene88778:CDS |
| TCATGATCTTCTCTTGACCT+CGG | 0.607853 | 5.4:+55038563 | None:intergenic |
| TTGTCGGGCTTTCCAAAGAG+GGG | 0.608582 | 5.4:-55041957 | MS.gene88778:CDS |
| TCACCCTCGGTGAAATCGAA+GGG | 0.609691 | 5.4:+55042771 | None:intergenic |
| GGAAGCAAAGCAGAAAAGGG+AGG | 0.609716 | 5.4:-55041990 | MS.gene88778:CDS |
| CAAGAGAAATGATAGAAGAG+AGG | 0.610710 | 5.4:-55039038 | MS.gene88778:CDS |
| AGACATGAACCCGCTAACAC+TGG | 0.618621 | 5.4:-55042904 | None:intergenic |
| AAGATAAAAGACCAAGTAGG+CGG | 0.618731 | 5.4:-55038745 | MS.gene88778:CDS |
| GAAAGCCCGACAAACACCAC+GGG | 0.618848 | 5.4:+55041967 | None:intergenic |
| ATCATAAAAGGGAAGACAGG+AGG | 0.621506 | 5.4:-55038826 | MS.gene88778:CDS |
| AACAGCGATCACATCACCCT+CGG | 0.630240 | 5.4:+55042758 | None:intergenic |
| ACTGATCGATCTGAATCCAA+AGG | 0.632548 | 5.4:-55038506 | MS.gene88778:CDS |
| CAAAGAGGGGAGTGTACTCG+TGG | 0.640039 | 5.4:-55041944 | MS.gene88778:CDS |
| GGAAAGCCCGACAAACACCA+CGG | 0.645236 | 5.4:+55041966 | None:intergenic |
| ACCACCGACGAAAACATAAG+CGG | 0.664303 | 5.4:+55042797 | None:intergenic |
| TGATAAATATAAGAAGATGG+AGG | 0.665787 | 5.4:-55042026 | MS.gene88778:CDS |
| ATGGAGCTCAGGTTTCAGGT+AGG | 0.666007 | 5.4:-55042069 | MS.gene88778:CDS |
| AAGCAGAAAAGGGAGGCCCG+TGG | 0.687506 | 5.4:-55041983 | MS.gene88778:CDS |
| TATTCCCTTCGATTTCACCG+AGG | 0.720373 | 5.4:-55042775 | MS.gene88778:CDS |
| CTGACGATGAATCTATGCCG+AGG | 0.725370 | 5.4:-55038580 | MS.gene88778:CDS |
| AGCAAGTCAAGAGAAACACA+CGG | 0.752914 | 5.4:-55038635 | MS.gene88778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCATTAAATTAAAAAAAA+AGG | + | chr5.4:55040986-55041005 | None:intergenic | 10.0% |
| !! | ACCATTAAATTAAAAAAAAA+GGG | + | chr5.4:55040985-55041004 | None:intergenic | 10.0% |
| !! | TTCAAAAAATAATCAAATAT+CGG | - | chr5.4:55040432-55040451 | MS.gene88778:intron | 10.0% |
| !!! | AATTTAATTTAATTTAACCT+TGG | - | chr5.4:55040799-55040818 | MS.gene88778:intron | 10.0% |
| !!! | TGGATATTATTTATATTTTA+AGG | - | chr5.4:55040075-55040094 | MS.gene88778:intron | 10.0% |
| !!! | TTTTTTTTTAATTTAATGGT+TGG | - | chr5.4:55040985-55041004 | MS.gene88778:intron | 10.0% |
| !! | TATAAATAATATCCACTATA+AGG | + | chr5.4:55040070-55040089 | None:intergenic | 15.0% |
| !!! | AAAATATAGTTTAGAATTAC+AGG | + | chr5.4:55038971-55038990 | None:intergenic | 15.0% |
| !!! | ACCAAAATGTTTTAAAAATA+GGG | + | chr5.4:55040290-55040309 | None:intergenic | 15.0% |
| !!! | ATTGATTGATAATATCTTTA+CGG | - | chr5.4:55038737-55038756 | MS.gene88778:CDS | 15.0% |
| !!! | CATTGATTTTAATTGTTTAT+TGG | - | chr5.4:55039514-55039533 | MS.gene88778:intron | 15.0% |
| !!! | TGTCTAAATTATCTAAAATT+TGG | + | chr5.4:55040032-55040051 | None:intergenic | 15.0% |
| !! | ATTGAAAAGTTCTTCTTTAT+AGG | + | chr5.4:55040621-55040640 | None:intergenic | 20.0% |
| !! | TACTTACAAAAGATACATTA+GGG | + | chr5.4:55039040-55039059 | None:intergenic | 20.0% |
| !! | TGAACAAATTACATGAATAA+TGG | + | chr5.4:55040416-55040435 | None:intergenic | 20.0% |
| !! | TGATAATTCAAAATACTTTG+TGG | + | chr5.4:55039496-55039515 | None:intergenic | 20.0% |
| !! | TTACTTACAAAAGATACATT+AGG | + | chr5.4:55039041-55039060 | None:intergenic | 20.0% |
| !! | TTTCAACTATAATCAAATAG+CGG | + | chr5.4:55040254-55040273 | None:intergenic | 20.0% |
| !!! | AATATATTTTTGCTAATCAG+TGG | + | chr5.4:55040667-55040686 | None:intergenic | 20.0% |
| !!! | ACCCTATTTTTAAAACATTT+TGG | - | chr5.4:55040286-55040305 | MS.gene88778:intron | 20.0% |
| !!! | ACTACTTTTACTTTAATGTA+TGG | + | chr5.4:55040709-55040728 | None:intergenic | 20.0% |
| !!! | ATCTTTTGTAAGTAATTGTA+TGG | - | chr5.4:55039046-55039065 | MS.gene88778:CDS | 20.0% |
| !!! | CACCAAAATGTTTTAAAAAT+AGG | + | chr5.4:55040291-55040310 | None:intergenic | 20.0% |
| !!! | GCCCTTTTTTTTTAATTTAA+TGG | - | chr5.4:55040981-55041000 | MS.gene88778:intron | 20.0% |
| !!! | GTGATATTATTTTCATGATT+AGG | - | chr5.4:55040002-55040021 | MS.gene88778:intron | 20.0% |
| !!! | TAAAAAAAGTTTTACATCGA+CGG | + | chr5.4:55038684-55038703 | None:intergenic | 20.0% |
| !!! | TATGTTATAAAATTTGCTGT+TGG | - | chr5.4:55042026-55042045 | MS.gene88778:CDS | 20.0% |
| !!! | TGTTGATAAATATAAGAAGA+TGG | - | chr5.4:55039331-55039350 | MS.gene88778:intron | 20.0% |
| !!! | TTTAAGGTAAATGATAACTA+GGG | - | chr5.4:55040091-55040110 | MS.gene88778:intron | 20.0% |
| !!! | TTTGATTATCTGTTTTTTTC+AGG | - | chr5.4:55039212-55039231 | MS.gene88778:CDS | 20.0% |
| !!! | TTTTAAAAATAGGGTCAATT+TGG | + | chr5.4:55040281-55040300 | None:intergenic | 20.0% |
| !!! | TTTTAAGGTAAATGATAACT+AGG | - | chr5.4:55040090-55040109 | MS.gene88778:intron | 20.0% |
| ! | AAAAGTCAAACTTCAATGTT+CGG | + | chr5.4:55039566-55039585 | None:intergenic | 25.0% |
| ! | AAGAAATGAATATATTCCAG+AGG | - | chr5.4:55041157-55041176 | MS.gene88778:intron | 25.0% |
| ! | ACATCATTCAATAGTCAATT+CGG | + | chr5.4:55039104-55039123 | None:intergenic | 25.0% |
| ! | ACGAAGAAATTCATTAAAAC+AGG | + | chr5.4:55039889-55039908 | None:intergenic | 25.0% |
| ! | ACGTAGAAAAATAATATTCC+TGG | - | chr5.4:55041350-55041369 | MS.gene88778:intron | 25.0% |
| ! | ATTAATCTTGTAAGAGACAA+AGG | - | chr5.4:55038863-55038882 | MS.gene88778:CDS | 25.0% |
| ! | ATTAGGTGAAATAACTGTAT+AGG | + | chr5.4:55039936-55039955 | None:intergenic | 25.0% |
| ! | CATTTCTTTCAAGATGAATT+TGG | + | chr5.4:55041145-55041164 | None:intergenic | 25.0% |
| ! | GAAAAATAATATTCCTGGAA+AGG | - | chr5.4:55041355-55041374 | MS.gene88778:intron | 25.0% |
| ! | GCATTATATGAAAAGCTATT+AGG | + | chr5.4:55039953-55039972 | None:intergenic | 25.0% |
| ! | GGATTGATAAAATGACAATT+AGG | - | chr5.4:55041006-55041025 | MS.gene88778:intron | 25.0% |
| ! | GTAGTTATATAACCTTATAG+TGG | - | chr5.4:55040055-55040074 | MS.gene88778:intron | 25.0% |
| ! | TAATGAGTTTATAATTGCAC+TGG | - | chr5.4:55041799-55041818 | MS.gene88778:intron | 25.0% |
| ! | TCAAGTAATAAGAACTTAGA+AGG | + | chr5.4:55041840-55041859 | None:intergenic | 25.0% |
| ! | TGATAAATATAAGAAGATGG+AGG | - | chr5.4:55039334-55039353 | MS.gene88778:intron | 25.0% |
| !! | GTACACATACACATAATTTT+TGG | - | chr5.4:55039907-55039926 | MS.gene88778:intron | 25.0% |
| !!! | TTGTAGTTTTGATACATTCA+AGG | - | chr5.4:55039138-55039157 | MS.gene88778:CDS | 25.0% |
| !!! | TTTGAAGATGACAAGTTTTT+TGG | - | chr5.4:55038805-55038824 | MS.gene88778:CDS | 25.0% |
| AAGGAATGGTTATGATGATA+GGG | - | chr5.4:55042496-55042515 | MS.gene88778:CDS | 30.0% | |
| ACATGATTCTACAGTCAAAT+TGG | + | chr5.4:55039984-55040003 | None:intergenic | 30.0% | |
| ACTTCTCTGAATATGTTCTT+AGG | - | chr5.4:55041644-55041663 | MS.gene88778:intron | 30.0% | |
| AGAACTGAAAACACACAATA+AGG | + | chr5.4:55042097-55042116 | None:intergenic | 30.0% | |
| ATTAAAAAAAAAGGGCAACC+CGG | + | chr5.4:55040977-55040996 | None:intergenic | 30.0% | |
| CCATACCTTCTTTCTTTATT+GGG | + | chr5.4:55042212-55042231 | None:intergenic | 30.0% | |
| CTGAATTGCTTTGTAATGTT+TGG | - | chr5.4:55039244-55039263 | MS.gene88778:intron | 30.0% | |
| CTGATCTTAGAGAAGATAAA+AGG | - | chr5.4:55042672-55042691 | MS.gene88778:intron | 30.0% | |
| CTTCTCTGAATATGTTCTTA+GGG | - | chr5.4:55041645-55041664 | MS.gene88778:intron | 30.0% | |
| TAAATATAAGAAGATGGAGG+AGG | - | chr5.4:55039337-55039356 | MS.gene88778:intron | 30.0% | |
| TATGCTGGTAATACATGAAT+TGG | + | chr5.4:55041286-55041305 | None:intergenic | 30.0% | |
| TGAAAGTTTGTATTGAGAAG+TGG | - | chr5.4:55040582-55040601 | MS.gene88778:intron | 30.0% | |
| TGATAATATCTTTACGGTGT+TGG | - | chr5.4:55038743-55038762 | MS.gene88778:CDS | 30.0% | |
| TTCGTTGTGAGTTATAACTT+GGG | + | chr5.4:55041758-55041777 | None:intergenic | 30.0% | |
| TTCTATCATTTCTCTTGGAT+GGG | + | chr5.4:55042319-55042338 | None:intergenic | 30.0% | |
| TTCTTTGATCTTCATATGCT+AGG | + | chr5.4:55038916-55038935 | None:intergenic | 30.0% | |
| TTGATTATGTATGTTATCGC+TGG | - | chr5.4:55038990-55039009 | MS.gene88778:CDS | 30.0% | |
| TTTCGTTGTGAGTTATAACT+TGG | + | chr5.4:55041759-55041778 | None:intergenic | 30.0% | |
| ! | AGAGGAAGAATTTTATGTGA+AGG | - | chr5.4:55041422-55041441 | MS.gene88778:intron | 30.0% |
| ! | AGGAAGAATTTTATGTGAAG+GGG | - | chr5.4:55041424-55041443 | MS.gene88778:intron | 30.0% |
| ! | CTAATTCCATCTCATTTTCA+CGG | + | chr5.4:55042292-55042311 | None:intergenic | 30.0% |
| ! | GAGGAAGAATTTTATGTGAA+GGG | - | chr5.4:55041423-55041442 | MS.gene88778:intron | 30.0% |
| ! | GCATAGTTTATACTCAGTTT+TGG | - | chr5.4:55041973-55041992 | MS.gene88778:CDS | 30.0% |
| ! | GTTGTACACAAGTTTTTCTT+AGG | - | chr5.4:55039690-55039709 | MS.gene88778:intron | 30.0% |
| ! | TAATTCCATCTCATTTTCAC+GGG | + | chr5.4:55042291-55042310 | None:intergenic | 30.0% |
| !! | AAAGGTACTGGAAAATCAAA+GGG | - | chr5.4:55038881-55038900 | MS.gene88778:CDS | 30.0% |
| !!! | GATGACAAGTTTTTTGGTTT+TGG | - | chr5.4:55038811-55038830 | MS.gene88778:CDS | 30.0% |
| AAAACACACAATAAGGTAGC+AGG | + | chr5.4:55042090-55042109 | None:intergenic | 35.0% | |
| AAACTCCTAAACAAAGCTCA+AGG | - | chr5.4:55041592-55041611 | MS.gene88778:intron | 35.0% | |
| AAAGGAGTGAATTGGGTTAT+GGG | - | chr5.4:55041373-55041392 | MS.gene88778:intron | 35.0% | |
| AACTCCTAAACAAAGCTCAA+GGG | - | chr5.4:55041593-55041612 | MS.gene88778:intron | 35.0% | |
| AAGAATGAAACCTAAGCAAG+CGG | - | chr5.4:55041102-55041121 | MS.gene88778:intron | 35.0% | |
| AAGATAAAAGACCAAGTAGG+CGG | - | chr5.4:55042615-55042634 | MS.gene88778:intron | 35.0% | |
| ACAACACGACACACATTTAA+GGG | - | chr5.4:55039170-55039189 | MS.gene88778:CDS | 35.0% | |
| AGATGGCGATAGTAAATTTG+TGG | - | chr5.4:55042364-55042383 | MS.gene88778:intron | 35.0% | |
| ATGGTCCCAATAAAGAAAGA+AGG | - | chr5.4:55042204-55042223 | MS.gene88778:intron | 35.0% | |
| CAAGAGAAATGATAGAAGAG+AGG | - | chr5.4:55042322-55042341 | MS.gene88778:intron | 35.0% | |
| CAAGGAATGGTTATGATGAT+AGG | - | chr5.4:55042495-55042514 | MS.gene88778:CDS | 35.0% | |
| CCCAATAAAGAAAGAAGGTA+TGG | - | chr5.4:55042209-55042228 | MS.gene88778:intron | 35.0% | |
| CCTCAATCAAATAAGCCAAA+AGG | + | chr5.4:55039622-55039641 | None:intergenic | 35.0% | |
| CTCTCTTCTATCATTTCTCT+TGG | + | chr5.4:55042324-55042343 | None:intergenic | 35.0% | |
| CTTCTATCATTTCTCTTGGA+TGG | + | chr5.4:55042320-55042339 | None:intergenic | 35.0% | |
| GAAGAAATGAGATCAAGGAA+TGG | - | chr5.4:55042482-55042501 | MS.gene88778:CDS | 35.0% | |
| GAATATGTTCTTAGGGAGTT+AGG | - | chr5.4:55041652-55041671 | MS.gene88778:intron | 35.0% | |
| GAGAAGATAAAAGACCAAGT+AGG | - | chr5.4:55042612-55042631 | MS.gene88778:intron | 35.0% | |
| GAGTTTACAAGGGTCTATTT+AGG | + | chr5.4:55041241-55041260 | None:intergenic | 35.0% | |
| GATGGCGATAGTAAATTTGT+GGG | - | chr5.4:55042365-55042384 | MS.gene88778:intron | 35.0% | |
| GCCATACCTTCTTTCTTTAT+TGG | + | chr5.4:55042213-55042232 | None:intergenic | 35.0% | |
| GGGGATAATGACAAATATGA+TGG | - | chr5.4:55042185-55042204 | MS.gene88778:intron | 35.0% | |
| GTCAGAATCATTTCTTCCTT+TGG | + | chr5.4:55042873-55042892 | None:intergenic | 35.0% | |
| TAGACCATAGTAGTCAATAG+CGG | - | chr5.4:55040116-55040135 | MS.gene88778:intron | 35.0% | |
| TATAGCGCTATGACAAATAG+TGG | + | chr5.4:55040461-55040480 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr5.4:55040885-55040904 | MS.gene88778:intron | 35.0% | |
| TGAGCCAAGAGATCATAAAA+GGG | - | chr5.4:55042523-55042542 | MS.gene88778:intron | 35.0% | |
| TGATCAGAATCTCTTGACTT+AGG | + | chr5.4:55042590-55042609 | None:intergenic | 35.0% | |
| TGTGTCACAGATAATCTGAA+TGG | - | chr5.4:55039272-55039291 | MS.gene88778:intron | 35.0% | |
| TTACTCTACTATCTTTCCTC+TGG | + | chr5.4:55041176-55041195 | None:intergenic | 35.0% | |
| TTTGACAAGTATGCTAAGAC+TGG | - | chr5.4:55041042-55041061 | MS.gene88778:intron | 35.0% | |
| ! | AGGTTTCAGGTAGGATTATT+AGG | - | chr5.4:55039300-55039319 | MS.gene88778:intron | 35.0% |
| ! | GAATCTCTATCTCTAGTTTC+TGG | + | chr5.4:55042257-55042276 | None:intergenic | 35.0% |
| ! | GCTTTGTGATTTTCCGTATT+GGG | - | chr5.4:55041486-55041505 | MS.gene88778:intron | 35.0% |
| ! | GGTTTCAGGTAGGATTATTA+GGG | - | chr5.4:55039301-55039320 | MS.gene88778:intron | 35.0% |
| ! | TCAGAAAGTTGGTTAACAAG+AGG | - | chr5.4:55041404-55041423 | MS.gene88778:intron | 35.0% |
| ! | TCATCATCTTGATAGTCTCT+TGG | + | chr5.4:55042425-55042444 | None:intergenic | 35.0% |
| ! | TCTCTTTTCTTCTCTTCTAC+TGG | + | chr5.4:55042402-55042421 | None:intergenic | 35.0% |
| ! | TCTTCCCTTTTATGATCTCT+TGG | + | chr5.4:55042530-55042549 | None:intergenic | 35.0% |
| ! | TGCTTTGTGATTTTCCGTAT+TGG | - | chr5.4:55041485-55041504 | MS.gene88778:intron | 35.0% |
| ! | TGTTCATATGCAATGCCTTT+TGG | - | chr5.4:55039604-55039623 | MS.gene88778:intron | 35.0% |
| !! | AGCTTTGTTTAGGAGTTTCT+AGG | + | chr5.4:55041590-55041609 | None:intergenic | 35.0% |
| !! | AGGCGTTTTTGTTTGATTGT+GGG | - | chr5.4:55039639-55039658 | MS.gene88778:intron | 35.0% |
| !! | CAAAGGTACTGGAAAATCAA+AGG | - | chr5.4:55038880-55038899 | MS.gene88778:CDS | 35.0% |
| !! | GCTTTGTTTAGGAGTTTCTA+GGG | + | chr5.4:55041589-55041608 | None:intergenic | 35.0% |
| !! | TTTTGGTGATATCCAGGTAT+GGG | - | chr5.4:55038828-55038847 | MS.gene88778:CDS | 35.0% |
| !!! | ACTCAGTTTTGGTTTGCTTA+TGG | - | chr5.4:55041984-55042003 | MS.gene88778:CDS | 35.0% |
| !!! | CCTTTTGGCTTATTTGATTG+AGG | - | chr5.4:55039619-55039638 | MS.gene88778:intron | 35.0% |
| !!! | GATTTTGGGACAAATGTTTC+AGG | - | chr5.4:55041311-55041330 | MS.gene88778:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr5.4:55040886-55040905 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTTGGTGATATCC+AGG | - | chr5.4:55038822-55038841 | MS.gene88778:CDS | 35.0% |
| AAGAGGAAGCAAAGCAGAAA+AGG | - | chr5.4:55039366-55039385 | MS.gene88778:intron | 40.0% | |
| AAGATAAAAGGCCAAGTAGG+CGG | - | chr5.4:55042684-55042703 | MS.gene88778:intron | 40.0% | |
| AAGGAGTGAATTGGGTTATG+GGG | - | chr5.4:55041374-55041393 | MS.gene88778:intron | 40.0% | |
| AAGGGTCTATTTAGGTCAGT+CGG | + | chr5.4:55041233-55041252 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr5.4:55040879-55040898 | MS.gene88778:intron | 40.0% | |
| ACTGATCGATCTGAATCCAA+AGG | - | chr5.4:55042854-55042873 | MS.gene88778:CDS | 40.0% | |
| AGAAAGCAAGCCAGTCATTA+AGG | + | chr5.4:55039802-55039821 | None:intergenic | 40.0% | |
| AGAATGAAACCTAAGCAAGC+GGG | - | chr5.4:55041103-55041122 | MS.gene88778:intron | 40.0% | |
| AGAGGAAGCAAAGCAGAAAA+GGG | - | chr5.4:55039367-55039386 | MS.gene88778:intron | 40.0% | |
| AGATAAAAGACCAAGTAGGC+GGG | - | chr5.4:55042616-55042635 | MS.gene88778:intron | 40.0% | |
| AGATAATCTGAATGGAGCTC+AGG | - | chr5.4:55039280-55039299 | MS.gene88778:intron | 40.0% | |
| AGCAAGTCAAGAGAAACACA+CGG | - | chr5.4:55042725-55042744 | MS.gene88778:intron | 40.0% | |
| ATCATAAAAGGGAAGACAGG+AGG | - | chr5.4:55042534-55042553 | MS.gene88778:intron | 40.0% | |
| ATCCTACTCGTGAGTTTACA+AGG | + | chr5.4:55041252-55041271 | None:intergenic | 40.0% | |
| ATTCCTGGAAAGGAGTGAAT+TGG | - | chr5.4:55041365-55041384 | MS.gene88778:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr5.4:55040880-55040899 | MS.gene88778:intron | 40.0% | |
| CGAACATGCTGAGTTAGATT+TGG | - | chr5.4:55041695-55041714 | MS.gene88778:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr5.4:55040911-55040930 | MS.gene88778:intron | 40.0% | |
| CTATCCGAGATTGAGTACTA+TGG | - | chr5.4:55040524-55040543 | MS.gene88778:intron | 40.0% | |
| CTATTTAGGTCAGTCGGTAA+GGG | + | chr5.4:55041227-55041246 | None:intergenic | 40.0% | |
| CTGACCAAAGAGAAGAAAAG+AGG | - | chr5.4:55042888-55042907 | MS.gene88778:CDS | 40.0% | |
| CTGAGCCAAGAGATCATAAA+AGG | - | chr5.4:55042522-55042541 | MS.gene88778:intron | 40.0% | |
| CTGATAGCTATCACCCAATA+CGG | + | chr5.4:55041502-55041521 | None:intergenic | 40.0% | |
| GAAAGGAGTGAATTGGGTTA+TGG | - | chr5.4:55041372-55041391 | MS.gene88778:intron | 40.0% | |
| GACAACACGACACACATTTA+AGG | - | chr5.4:55039169-55039188 | MS.gene88778:CDS | 40.0% | |
| GAGAAGATAAAAGGCCAAGT+AGG | - | chr5.4:55042681-55042700 | MS.gene88778:intron | 40.0% | |
| GAGATCATAAAAGGGAAGAC+AGG | - | chr5.4:55042531-55042550 | MS.gene88778:intron | 40.0% | |
| GGAAGCAAGTTACTGTATTG+AGG | + | chr5.4:55041206-55041225 | None:intergenic | 40.0% | |
| GGAGAGAAGAAATGAGATCA+AGG | - | chr5.4:55042477-55042496 | MS.gene88778:CDS | 40.0% | |
| GGTCAAGAGAAGATCATGAT+AGG | - | chr5.4:55042801-55042820 | MS.gene88778:CDS | 40.0% | |
| TAATTTAACCTTGGCGCAAC+TGG | - | chr5.4:55040808-55040827 | MS.gene88778:intron | 40.0% | |
| TAGGCCATAGTACTCAATCT+CGG | + | chr5.4:55040531-55040550 | None:intergenic | 40.0% | |
| TAGTACTCAATCTCGGATAG+CGG | + | chr5.4:55040524-55040543 | None:intergenic | 40.0% | |
| TCATGATCTTCTCTTGACCT+CGG | + | chr5.4:55042800-55042819 | None:intergenic | 40.0% | |
| TCCTACTCGTGAGTTTACAA+GGG | + | chr5.4:55041251-55041270 | None:intergenic | 40.0% | |
| TCTATTTAGGTCAGTCGGTA+AGG | + | chr5.4:55041228-55041247 | None:intergenic | 40.0% | |
| TTCAGGTAGGATTATTAGGG+TGG | - | chr5.4:55039304-55039323 | MS.gene88778:intron | 40.0% | |
| TTCCTGGAAAGGAGTGAATT+GGG | - | chr5.4:55041366-55041385 | MS.gene88778:intron | 40.0% | |
| TTGTAGAGAGCTGCAAATAC+TGG | - | chr5.4:55042137-55042156 | MS.gene88778:intron | 40.0% | |
| ! | AAGCAGCAGCTTTTCACAAT+AGG | + | chr5.4:55041470-55041489 | None:intergenic | 40.0% |
| ! | AATACTGGTTGGGGTGATAA+CGG | - | chr5.4:55042152-55042171 | MS.gene88778:intron | 40.0% |
| ! | ACCAGCATAGCTGTGATTTT+GGG | - | chr5.4:55041297-55041316 | MS.gene88778:intron | 40.0% |
| ! | CTTGTAAGAGACAAAGGTAC+TGG | - | chr5.4:55038869-55038888 | MS.gene88778:CDS | 40.0% |
| ! | CTTTTATGATCTCTTGGCTC+AGG | + | chr5.4:55042524-55042543 | None:intergenic | 40.0% |
| ! | GATTCCGCTTATGTTTTCGT+CGG | - | chr5.4:55038559-55038578 | MS.gene88778:CDS | 40.0% |
| ! | GCTATTGACTACTATGGTCT+AGG | + | chr5.4:55040117-55040136 | None:intergenic | 40.0% |
| ! | TACCAGCATAGCTGTGATTT+TGG | - | chr5.4:55041296-55041315 | MS.gene88778:intron | 40.0% |
| ! | TGGACCTCTTTTCTTCTCTT+TGG | + | chr5.4:55042895-55042914 | None:intergenic | 40.0% |
| ! | TTTGGAGGGTGAGAAGTATA+AGG | + | chr5.4:55041555-55041574 | None:intergenic | 40.0% |
| ! | TTTGGTGATATCCAGGTATG+GGG | - | chr5.4:55038829-55038848 | MS.gene88778:CDS | 40.0% |
| !! | AGAAGCACTAATCTTGCTGT+TGG | - | chr5.4:55038932-55038951 | MS.gene88778:CDS | 40.0% |
| !! | CTAGTTTCTGGAATACGATC+TGG | + | chr5.4:55042245-55042264 | None:intergenic | 40.0% |
| !! | CTCAGACATTTGTTTCTGCT+TGG | - | chr5.4:55039820-55039839 | MS.gene88778:intron | 40.0% |
| !! | GACATTTGTTTCTGCTTGGT+AGG | - | chr5.4:55039824-55039843 | MS.gene88778:intron | 40.0% |
| !! | GAGGCGTTTTTGTTTGATTG+TGG | - | chr5.4:55039638-55039657 | MS.gene88778:intron | 40.0% |
| !! | GGAAGCTTGTTGTTTGTAGT+AGG | - | chr5.4:55041716-55041735 | MS.gene88778:intron | 40.0% |
| !! | GTGATAACGGGATTGCAAAA+GGG | - | chr5.4:55042165-55042184 | MS.gene88778:intron | 40.0% |
| !! | GTTTTGGTGATATCCAGGTA+TGG | - | chr5.4:55038827-55038846 | MS.gene88778:CDS | 40.0% |
| !! | TGATAACGGGATTGCAAAAG+GGG | - | chr5.4:55042166-55042185 | MS.gene88778:intron | 40.0% |
| AACCCAATTCACTCCTTTCC+AGG | + | chr5.4:55041371-55041390 | None:intergenic | 45.0% | |
| AAGAATTACACAGCAGCAGC+AGG | + | chr5.4:55041889-55041908 | None:intergenic | 45.0% | |
| AAGAGAAACACACGGTAGCA+GGG | - | chr5.4:55042733-55042752 | MS.gene88778:intron | 45.0% | |
| AAGATGTTGCGAAGGCAAGA+TGG | - | chr5.4:55042347-55042366 | MS.gene88778:intron | 45.0% | |
| AAGCCAGTCATTAAGGCTGT+AGG | + | chr5.4:55039795-55039814 | None:intergenic | 45.0% | |
| AATGAAACCTAAGCAAGCGG+GGG | - | chr5.4:55041105-55041124 | MS.gene88778:intron | 45.0% | |
| ACATAAGCGAAGACGCTTCA+TGG | - | chr5.4:55038521-55038540 | MS.gene88778:CDS | 45.0% | |
| ACCACCGACGAAAACATAAG+CGG | + | chr5.4:55038566-55038585 | None:intergenic | 45.0% | |
| ACCCTTGTAAACTCACGAGT+AGG | - | chr5.4:55041247-55041266 | MS.gene88778:intron | 45.0% | |
| AGAATTACACAGCAGCAGCA+GGG | + | chr5.4:55041888-55041907 | None:intergenic | 45.0% | |
| AGAGAGCTGCAAATACTGGT+TGG | - | chr5.4:55042141-55042160 | MS.gene88778:intron | 45.0% | |
| AGATAAAAGGCCAAGTAGGC+GGG | - | chr5.4:55042685-55042704 | MS.gene88778:intron | 45.0% | |
| AGGTAGCAGGACAAATGATC+TGG | + | chr5.4:55042077-55042096 | None:intergenic | 45.0% | |
| ATTCCCTTCGATTTCACCGA+GGG | - | chr5.4:55038586-55038605 | MS.gene88778:CDS | 45.0% | |
| CGCTATGACGATTAGCGTAA+CGG | + | chr5.4:55040167-55040186 | None:intergenic | 45.0% | |
| CGTTACGCTAATCGTCATAG+CGG | - | chr5.4:55040165-55040184 | MS.gene88778:intron | 45.0% | |
| CTAAACAAAGCTCAAGGGCA+GGG | - | chr5.4:55041598-55041617 | MS.gene88778:intron | 45.0% | |
| CTGGCAACTAAGCAGAAGAA+GGG | + | chr5.4:55042058-55042077 | None:intergenic | 45.0% | |
| GAATGAAACCTAAGCAAGCG+GGG | - | chr5.4:55041104-55041123 | MS.gene88778:intron | 45.0% | |
| GAGAAGAAAAGAGGTCCAGA+AGG | - | chr5.4:55042897-55042916 | MS.gene88778:CDS | 45.0% | |
| GAGAGGAAAAGATGTTGCGA+AGG | - | chr5.4:55042339-55042358 | MS.gene88778:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr5.4:55040910-55040929 | MS.gene88778:intron | 45.0% | |
| GCTAACAGAAGACACATTCG+AGG | - | chr5.4:55039077-55039096 | MS.gene88778:CDS | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr5.4:55040907-55040926 | MS.gene88778:intron | 45.0% | |
| GTTGTTGTCATGTGACCGTA+AGG | - | chr5.4:55040835-55040854 | MS.gene88778:intron | 45.0% | |
| TATTCCCTTCGATTTCACCG+AGG | - | chr5.4:55038585-55038604 | MS.gene88778:CDS | 45.0% | |
| TCCCAAAATCACAGCTATGC+TGG | + | chr5.4:55041301-55041320 | None:intergenic | 45.0% | |
| TCTGGCAACTAAGCAGAAGA+AGG | + | chr5.4:55042059-55042078 | None:intergenic | 45.0% | |
| TTTGTCGGGCTTTCCAAAGA+GGG | - | chr5.4:55039402-55039421 | MS.gene88778:intron | 45.0% | |
| ! | AGAGCTGCAAATACTGGTTG+GGG | - | chr5.4:55042143-55042162 | MS.gene88778:intron | 45.0% |
| ! | ATACTGGTTGGGGTGATAAC+GGG | - | chr5.4:55042153-55042172 | MS.gene88778:intron | 45.0% |
| ! | GAGAGCTGCAAATACTGGTT+GGG | - | chr5.4:55042142-55042161 | MS.gene88778:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr5.4:55040875-55040894 | None:intergenic | 45.0% |
| ! | TTTTTATCCCCCGCTTGCTT+AGG | + | chr5.4:55041115-55041134 | None:intergenic | 45.0% |
| !! | GGTGATAACGGGATTGCAAA+AGG | - | chr5.4:55042164-55042183 | MS.gene88778:intron | 45.0% |
| !! | GTTTAGGAGTTTCTAGGGCA+GGG | + | chr5.4:55041584-55041603 | None:intergenic | 45.0% |
| !! | TGTTTAGGAGTTTCTAGGGC+AGG | + | chr5.4:55041585-55041604 | None:intergenic | 45.0% |
| !! | TTTAGGAGTTTCTAGGGCAG+GGG | + | chr5.4:55041583-55041602 | None:intergenic | 45.0% |
| !!! | AGGCGGGATGTTGATGATTT+TGG | - | chr5.4:55042632-55042651 | MS.gene88778:intron | 45.0% |
| !! | AAATAAATAAAAAAAAAACT+GGG | + | chr5.4:55041929-55041948 | None:intergenic | 5.0% |
| !! | TAAATAAATAAAAAAAAAAC+TGG | + | chr5.4:55041930-55041949 | None:intergenic | 5.0% |
| !! | TTCATATAAATAAATAAAAA+AGG | + | chr5.4:55040751-55040770 | None:intergenic | 5.0% |
| AACAGCGATCACATCACCCT+CGG | + | chr5.4:55038605-55038624 | None:intergenic | 50.0% | |
| ACGCCTACAGCCTTAATGAC+TGG | - | chr5.4:55039789-55039808 | MS.gene88778:intron | 50.0% | |
| ATCAACAACCTCCCCATACC+TGG | + | chr5.4:55038843-55038862 | None:intergenic | 50.0% | |
| ATCACCCTCGGTGAAATCGA+AGG | + | chr5.4:55038593-55038612 | None:intergenic | 50.0% | |
| ATGCGCTTCACCAGTGTTAG+CGG | + | chr5.4:55038469-55038488 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr5.4:55040819-55040838 | None:intergenic | 50.0% | |
| CAAGAGAAACACACGGTAGC+AGG | - | chr5.4:55042732-55042751 | MS.gene88778:intron | 50.0% | |
| CAGAGCCCGTGAAAATGAGA+TGG | - | chr5.4:55042283-55042302 | MS.gene88778:intron | 50.0% | |
| CAGATCCTCTACCAGTGTCT+AGG | + | chr5.4:55040550-55040569 | None:intergenic | 50.0% | |
| CCTAAACAAAGCTCAAGGGC+AGG | - | chr5.4:55041597-55041616 | MS.gene88778:intron | 50.0% | |
| CCTACTACAAGGTGGGATAG+CGG | + | chr5.4:55040491-55040510 | None:intergenic | 50.0% | |
| CTACTACAAGGTGGGATAGC+GGG | + | chr5.4:55040490-55040509 | None:intergenic | 50.0% | |
| CTAGACACTGGTAGAGGATC+TGG | - | chr5.4:55040548-55040567 | MS.gene88778:intron | 50.0% | |
| CTGAATGGAGCTCAGGTTTC+AGG | - | chr5.4:55039287-55039306 | MS.gene88778:intron | 50.0% | |
| CTGACGATGAATCTATGCCG+AGG | - | chr5.4:55042780-55042799 | MS.gene88778:CDS | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | + | chr5.4:55040853-55040872 | None:intergenic | 50.0% | |
| GAGTACTATGGCCTAGACAC+TGG | - | chr5.4:55040536-55040555 | MS.gene88778:intron | 50.0% | |
| GATGGAGGAGGAAGATGAAG+AGG | - | chr5.4:55039349-55039368 | MS.gene88778:intron | 50.0% | |
| GGAAGCAAAGCAGAAAAGGG+AGG | - | chr5.4:55039370-55039389 | MS.gene88778:intron | 50.0% | |
| GGGGTGCGATATCAGAAAGT+TGG | - | chr5.4:55041393-55041412 | MS.gene88778:intron | 50.0% | |
| GTAGCAGCCTACTACAAGGT+GGG | + | chr5.4:55040498-55040517 | None:intergenic | 50.0% | |
| GTCATGTGACCGTAAGGTCA+CGG | - | chr5.4:55040841-55040860 | MS.gene88778:intron | 50.0% | |
| GTTTGTCGGGCTTTCCAAAG+AGG | - | chr5.4:55039401-55039420 | MS.gene88778:intron | 50.0% | |
| TATGGCCTAGACACTGGTAG+AGG | - | chr5.4:55040542-55040561 | MS.gene88778:intron | 50.0% | |
| TCACCCTCGGTGAAATCGAA+GGG | + | chr5.4:55038592-55038611 | None:intergenic | 50.0% | |
| TCATCAACATCCCGCCTACT+TGG | + | chr5.4:55042629-55042648 | None:intergenic | 50.0% | |
| TCATGTGACCGTAAGGTCAC+GGG | - | chr5.4:55040842-55040861 | MS.gene88778:intron | 50.0% | |
| TTGTCGGGCTTTCCAAAGAG+GGG | - | chr5.4:55039403-55039422 | MS.gene88778:intron | 50.0% | |
| ! | ATGGAGCTCAGGTTTCAGGT+AGG | - | chr5.4:55039291-55039310 | MS.gene88778:intron | 50.0% |
| ! | TCCGCTTATGTTTTCGTCGG+TGG | - | chr5.4:55038562-55038581 | MS.gene88778:CDS | 50.0% |
| !! | CCTGCCCTTGAGCTTTGTTT+AGG | + | chr5.4:55041600-55041619 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr5.4:55040854-55040873 | MS.gene88778:intron | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr5.4:55040951-55040970 | None:intergenic | 55.0% | |
| AGCGGTGCGGAATGAGATAG+AGG | - | chr5.4:55040183-55040202 | MS.gene88778:intron | 55.0% | |
| CACGAGTACACTCCCCTCTT+TGG | + | chr5.4:55039418-55039437 | None:intergenic | 55.0% | |
| CCGCTATCCCACCTTGTAGT+AGG | - | chr5.4:55040488-55040507 | MS.gene88778:intron | 55.0% | |
| CGCTAATCGTCATAGCGGTG+CGG | - | chr5.4:55040170-55040189 | MS.gene88778:intron | 55.0% | |
| CGTAGCAGCCTACTACAAGG+TGG | + | chr5.4:55040499-55040518 | None:intergenic | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr5.4:55040950-55040969 | None:intergenic | 55.0% | |
| GAAAGCCCGACAAACACCAC+GGG | + | chr5.4:55039396-55039415 | None:intergenic | 55.0% | |
| GGAAAGCCCGACAAACACCA+CGG | + | chr5.4:55039397-55039416 | None:intergenic | 55.0% | |
| GGCCACTTCAGCTGCTATAG+CGG | - | chr5.4:55040204-55040223 | MS.gene88778:intron | 55.0% | |
| GGTGATATCCAGGTATGGGG+AGG | - | chr5.4:55038832-55038851 | MS.gene88778:CDS | 55.0% | |
| GTGCGTAGCAGCCTACTACA+AGG | + | chr5.4:55040502-55040521 | None:intergenic | 55.0% | |
| TGCGCTTCACCAGTGTTAGC+GGG | + | chr5.4:55038468-55038487 | None:intergenic | 55.0% | |
| ! | CAAAGAGGGGAGTGTACTCG+TGG | - | chr5.4:55039416-55039435 | MS.gene88778:intron | 55.0% |
| ! | GCGGCCGCTATTGACTACTA+TGG | + | chr5.4:55040123-55040142 | None:intergenic | 55.0% |
| !! | TATAGCGGCGTAGCGGATAG+CGG | - | chr5.4:55040219-55040238 | MS.gene88778:intron | 55.0% |
| !! | TGCTTGGTAGGCTTGCTGTC+AGG | - | chr5.4:55039836-55039855 | MS.gene88778:intron | 55.0% |
| AAGCAGAAAAGGGAGGCCCG+TGG | - | chr5.4:55039377-55039396 | MS.gene88778:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr5.4:55040955-55040974 | MS.gene88778:intron | 60.0% | |
| CACACGGTAGCAGGGAAGAG+AGG | - | chr5.4:55042741-55042760 | MS.gene88778:intron | 60.0% | |
| CAGCTGCTATAGCGGCGTAG+CGG | - | chr5.4:55040212-55040231 | MS.gene88778:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr5.4:55040938-55040957 | None:intergenic | 60.0% | |
| CGCCGCTATAGCAGCTGAAG+TGG | + | chr5.4:55040209-55040228 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr5.4:55040938-55040957 | MS.gene88778:intron | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr5.4:55040939-55040958 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr5.4:55040939-55040958 | MS.gene88778:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr5.4:55040923-55040942 | MS.gene88778:intron | 60.0% |
| !! | AGGAGTTTCTAGGGCAGGGG+AGG | + | chr5.4:55041580-55041599 | None:intergenic | 60.0% |
| !! | GGAGTTTCTAGGGCAGGGGA+GGG | + | chr5.4:55041579-55041598 | None:intergenic | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr5.4:55040940-55040959 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr5.4:55040925-55040944 | None:intergenic | 65.0% | |
| CGTCGCAGCTACGCTACGTG+CGG | + | chr5.4:55040142-55040161 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr5.4:55040944-55040963 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr5.4:55040945-55040964 | None:intergenic | 65.0% | |
| GGAGGCCCGTGGTGTTTGTC+GGG | - | chr5.4:55039388-55039407 | MS.gene88778:intron | 65.0% | |
| GGGAGGCCCGTGGTGTTTGT+CGG | - | chr5.4:55039387-55039406 | MS.gene88778:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr5.4:55040956-55040975 | MS.gene88778:intron | 65.0% | |
| ! | GGGGAGTGTACTCGTGGAGC+TGG | - | chr5.4:55039422-55039441 | MS.gene88778:intron | 65.0% |
| ! | TCTAGGGCAGGGGAGGGCTT+TGG | + | chr5.4:55041573-55041592 | None:intergenic | 65.0% |
| ! | AGGGCAGGGGAGGGCTTTGG+AGG | + | chr5.4:55041570-55041589 | None:intergenic | 70.0% |
| !! | GGGCAGGGGAGGGCTTTGGA+GGG | + | chr5.4:55041569-55041588 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55038460 | 55042922 | 55038460 | ID=MS.gene88778 |
| chr5.4 | mRNA | 55038460 | 55042922 | 55038460 | ID=MS.gene88778.t1;Parent=MS.gene88778 |
| chr5.4 | exon | 55042750 | 55042922 | 55042750 | ID=MS.gene88778.t1.exon1;Parent=MS.gene88778.t1 |
| chr5.4 | CDS | 55042750 | 55042922 | 55042750 | ID=cds.MS.gene88778.t1;Parent=MS.gene88778.t1 |
| chr5.4 | exon | 55042429 | 55042538 | 55042429 | ID=MS.gene88778.t1.exon2;Parent=MS.gene88778.t1 |
| chr5.4 | CDS | 55042429 | 55042538 | 55042429 | ID=cds.MS.gene88778.t1;Parent=MS.gene88778.t1 |
| chr5.4 | exon | 55041913 | 55042100 | 55041913 | ID=MS.gene88778.t1.exon3;Parent=MS.gene88778.t1 |
| chr5.4 | CDS | 55041913 | 55042100 | 55041913 | ID=cds.MS.gene88778.t1;Parent=MS.gene88778.t1 |
| chr5.4 | exon | 55038460 | 55039239 | 55038460 | ID=MS.gene88778.t1.exon4;Parent=MS.gene88778.t1 |
| chr5.4 | CDS | 55038460 | 55039239 | 55038460 | ID=cds.MS.gene88778.t1;Parent=MS.gene88778.t1 |
| Gene Sequence |
| Protein sequence |
