Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88821.t1 | XP_024631230.1 | 98.7 | 473 | 6 | 0 | 1 | 473 | 1 | 473 | 1.00E-269 | 938.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88821.t1 | Q9SRE5 | 58.4 | 476 | 141 | 10 | 1 | 471 | 1 | 424 | 9.6e-131 | 468.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88821.t1 | A0A396JLZ8 | 98.7 | 473 | 6 | 0 | 1 | 473 | 1 | 473 | 7.5e-270 | 938.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050710 | MS.gene88821 | 0.80289 | 4.53E-49 | -1.69E-46 |
| MS.gene053108 | MS.gene88821 | 0.838779 | 2.35E-57 | -1.69E-46 |
| MS.gene056618 | MS.gene88821 | 0.828295 | 9.73E-55 | -1.69E-46 |
| MS.gene057669 | MS.gene88821 | 0.812799 | 3.53E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88821.t1 | MTR_1g026560 | 98.698 | 461 | 6 | 0 | 13 | 473 | 24 | 484 | 0.0 | 944 |
| MS.gene88821.t1 | MTR_6g045493 | 45.133 | 226 | 112 | 4 | 1 | 219 | 20 | 240 | 2.55e-40 | 151 |
| MS.gene88821.t1 | MTR_8g098495 | 47.030 | 202 | 95 | 5 | 13 | 208 | 42 | 237 | 6.27e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88821.t1 | AT1G76660 | 58.824 | 476 | 139 | 11 | 1 | 471 | 1 | 424 | 5.35e-172 | 490 |
| MS.gene88821.t1 | AT1G76660 | 54.521 | 365 | 114 | 9 | 111 | 471 | 1 | 317 | 1.48e-116 | 345 |
| MS.gene88821.t1 | AT5G52430 | 43.421 | 228 | 108 | 8 | 9 | 221 | 28 | 249 | 5.29e-35 | 135 |
| MS.gene88821.t1 | AT1G63720 | 35.206 | 267 | 154 | 6 | 12 | 274 | 35 | 286 | 2.92e-31 | 124 |
| MS.gene88821.t1 | AT4G25620 | 41.228 | 228 | 107 | 10 | 1 | 215 | 20 | 233 | 2.32e-22 | 99.8 |
Find 0 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATTTAAGGATAAAAT+TGG | + | 6093:18009-18028 | None:intergenic | 15.0% |
| !! | TTAAAATTTGATGAGAAATT+GGG | + | 6093:15568-15587 | None:intergenic | 15.0% |
| !!! | ATGTTTTATGGAAATTAAAT+AGG | - | 6093:15200-15219 | MS.gene88821:CDS | 15.0% |
| !!! | TGAAATTTTAAGCTTTTTTA+GGG | + | 6093:16346-16365 | None:intergenic | 15.0% |
| !!! | TTTAAAATTTGATGAGAAAT+TGG | + | 6093:15569-15588 | None:intergenic | 15.0% |
| !!! | TTTTATTGTTATAACATGTT+AGG | + | 6093:15655-15674 | None:intergenic | 15.0% |
| !! | AATCGAAAATGTTAAATAGA+AGG | + | 6093:14980-14999 | None:intergenic | 20.0% |
| !! | AGAAAGATTGTATAAGTATT+AGG | + | 6093:16062-16081 | None:intergenic | 20.0% |
| !! | AGTAAGTGATTAACATAATA+TGG | - | 6093:14868-14887 | MS.gene88821:intron | 20.0% |
| !! | GAAGATATATTCTCAAAAAT+GGG | - | 6093:18122-18141 | MS.gene88821:intron | 20.0% |
| !! | TATTACAAAATTAAATGACC+TGG | + | 6093:15963-15982 | None:intergenic | 20.0% |
| !! | TGAAGATATATTCTCAAAAA+TGG | - | 6093:18121-18140 | MS.gene88821:intron | 20.0% |
| !!! | CTGAAATTTTAAGCTTTTTT+AGG | + | 6093:16347-16366 | None:intergenic | 20.0% |
| !!! | TATGTTGTAGTTACTTTTAA+TGG | - | 6093:17853-17872 | MS.gene88821:intron | 20.0% |
| !!! | TCTATTTAACATTTTCGATT+TGG | - | 6093:14980-14999 | MS.gene88821:intron | 20.0% |
| !!! | TTTCTCATCAAATTTTAAAC+TGG | - | 6093:15570-15589 | MS.gene88821:CDS | 20.0% |
| ! | AAGAAAATCTTCAGTCAAAT+TGG | - | 6093:15881-15900 | MS.gene88821:CDS | 25.0% |
| ! | AATGTTAAATAGAAGGAATC+TGG | + | 6093:14973-14992 | None:intergenic | 25.0% |
| ! | AGGAGAGTAAATTAATAACT+GGG | - | 6093:15843-15862 | MS.gene88821:CDS | 25.0% |
| ! | ATAAACAAGAAAAGCAAAAG+AGG | + | 6093:15124-15143 | None:intergenic | 25.0% |
| ! | ATAATGCTAACATAAACAAG+AGG | - | 6093:15034-15053 | MS.gene88821:intron | 25.0% |
| ! | ATTAAGTGTTTCAAAAGACT+CGG | - | 6093:17289-17308 | MS.gene88821:intron | 25.0% |
| ! | CAGACTTATTCAATTAGATT+TGG | + | 6093:15404-15423 | None:intergenic | 25.0% |
| ! | GATAATGACAAAAAACAACT+TGG | + | 6093:16720-16739 | None:intergenic | 25.0% |
| ! | GCAAGAAAGAAACATATTTA+AGG | + | 6093:18019-18038 | None:intergenic | 25.0% |
| ! | TAGGAGAGTAAATTAATAAC+TGG | - | 6093:15842-15861 | MS.gene88821:CDS | 25.0% |
| ! | TATAAGTATTAGGAAGTCAA+CGG | + | 6093:16052-16071 | None:intergenic | 25.0% |
| ! | TATACTATATCCCAACATAA+TGG | + | 6093:15617-15636 | None:intergenic | 25.0% |
| ! | TATTAACTGTTCCAAACATA+TGG | + | 6093:16269-16288 | None:intergenic | 25.0% |
| ! | TATTACATCTTGAGAAATTG+TGG | - | 6093:17699-17718 | MS.gene88821:intron | 25.0% |
| ! | TTGAAGAGATTAATATGTGT+AGG | + | 6093:16120-16139 | None:intergenic | 25.0% |
| ! | TTGAATTCTTTCATCAATGA+AGG | + | 6093:17533-17552 | None:intergenic | 25.0% |
| ! | TTTCTCATGATACATTTGAA+AGG | + | 6093:15522-15541 | None:intergenic | 25.0% |
| !! | ATATGTTTGGAACAGTTAAT+AGG | - | 6093:16268-16287 | MS.gene88821:CDS | 25.0% |
| !! | ATGATACATTTGAAAGGTTT+TGG | + | 6093:15516-15535 | None:intergenic | 25.0% |
| !! | CTTTTTGTATACATACATAC+AGG | + | 6093:14827-14846 | None:intergenic | 25.0% |
| !! | TACAATCTTTCTCTTTTCTT+CGG | - | 6093:16070-16089 | MS.gene88821:CDS | 25.0% |
| !! | TTTGTAAATCTAAAACTCCA+AGG | + | 6093:15801-15820 | None:intergenic | 25.0% |
| !!! | AACAATGCTTTTTATCTACT+AGG | + | 6093:15697-15716 | None:intergenic | 25.0% |
| !!! | AATGAGATATTTTTGCTAAC+TGG | + | 6093:15311-15330 | None:intergenic | 25.0% |
| !!! | AATGCTTTTTATTCTCAACA+AGG | + | 6093:15441-15460 | None:intergenic | 25.0% |
| !!! | TACTCTTATTTTGAAAGAGA+GGG | + | 6093:17913-17932 | None:intergenic | 25.0% |
| AAAGTAACTACAACATACCA+AGG | + | 6093:17850-17869 | None:intergenic | 30.0% | |
| AAGCAACGAAAGGTTATTTA+TGG | + | 6093:14780-14799 | None:intergenic | 30.0% | |
| AATCAAATTCCTGTATGTGA+TGG | - | 6093:17632-17651 | MS.gene88821:intron | 30.0% | |
| AATCTGCAGGAAATATCAAA+TGG | - | 6093:18154-18173 | MS.gene88821:intron | 30.0% | |
| AATCTGGAAAAGAGTAAGTT+GGG | + | 6093:14957-14976 | None:intergenic | 30.0% | |
| AGAGTAAATTAATAACTGGG+GGG | - | 6093:15846-15865 | MS.gene88821:CDS | 30.0% | |
| ATCTGCAGGAAATATCAAAT+GGG | - | 6093:18155-18174 | MS.gene88821:intron | 30.0% | |
| CATGTTAGGATATAGTGTAA+TGG | + | 6093:15641-15660 | None:intergenic | 30.0% | |
| CATTTCTCCCAGAAATATAT+TGG | - | 6093:15327-15346 | MS.gene88821:CDS | 30.0% | |
| CTGAAAATGGAAAATATCAG+AGG | - | 6093:17129-17148 | MS.gene88821:intron | 30.0% | |
| GAAAACTGTTCCATTATGTT+GGG | - | 6093:15604-15623 | MS.gene88821:CDS | 30.0% | |
| GACAGGATATTATATGGTAA+TGG | + | 6093:15485-15504 | None:intergenic | 30.0% | |
| GAGAGTAAATTAATAACTGG+GGG | - | 6093:15845-15864 | MS.gene88821:CDS | 30.0% | |
| GGAAAAGACAGGATATTATA+TGG | + | 6093:15491-15510 | None:intergenic | 30.0% | |
| GGAGAGTAAATTAATAACTG+GGG | - | 6093:15844-15863 | MS.gene88821:CDS | 30.0% | |
| TACCTATGCACAATTCTATT+TGG | - | 6093:17232-17251 | MS.gene88821:intron | 30.0% | |
| TCCTTGATATTGGAGATATA+AGG | + | 6093:17037-17056 | None:intergenic | 30.0% | |
| TCGATTTCCACAAAATGAAA+GGG | - | 6093:14584-14603 | MS.gene88821:CDS | 30.0% | |
| TCTCGTATTCCTGATAATAA+TGG | - | 6093:16558-16577 | MS.gene88821:intron | 30.0% | |
| TGGAAGTTTATTCTCAATTC+CGG | + | 6093:15465-15484 | None:intergenic | 30.0% | |
| TTAAATGAAAGACTTTGCCT+TGG | - | 6093:15781-15800 | MS.gene88821:CDS | 30.0% | |
| TTCCATAAAACATTCAATCC+AGG | + | 6093:15193-15212 | None:intergenic | 30.0% | |
| TTTGTCGCCAATATATTTCT+GGG | + | 6093:15337-15356 | None:intergenic | 30.0% | |
| ! | ACAATCTTTCTCTTTTCTTC+GGG | - | 6093:16071-16090 | MS.gene88821:CDS | 30.0% |
| ! | ATAGTTACCCTTTCATTTTG+TGG | + | 6093:14594-14613 | None:intergenic | 30.0% |
| ! | ATCGATTTCCACAAAATGAA+AGG | - | 6093:14583-14602 | MS.gene88821:CDS | 30.0% |
| ! | ATGAAGGTATGCTGTAAAAA+CGG | - | 6093:17657-17676 | MS.gene88821:intron | 30.0% |
| ! | CTCTGATATTTTCCATTTTC+AGG | + | 6093:17131-17150 | None:intergenic | 30.0% |
| ! | GAAGTATTTAGCCATATGTT+TGG | - | 6093:16255-16274 | MS.gene88821:CDS | 30.0% |
| ! | TACCTGGATTGAATGTTTTA+TGG | - | 6093:15188-15207 | MS.gene88821:CDS | 30.0% |
| ! | TTTTCGTAGAAAATTGCATG+TGG | - | 6093:16143-16162 | MS.gene88821:CDS | 30.0% |
| ! | TTTTGTCGCCAATATATTTC+TGG | + | 6093:15338-15357 | None:intergenic | 30.0% |
| !! | TACATTTGAAAGGTTTTGGT+TGG | + | 6093:15512-15531 | None:intergenic | 30.0% |
| !! | TTGAGAATAAAAAGCATTGC+CGG | - | 6093:15443-15462 | MS.gene88821:CDS | 30.0% |
| !! | TTGTGGAAATCGATTTTGTT+CGG | + | 6093:14577-14596 | None:intergenic | 30.0% |
| !!! | CTACTCTTATTTTGAAAGAG+AGG | + | 6093:17914-17933 | None:intergenic | 30.0% |
| !!! | GTGTTTTAGGATCTAAGTTT+TGG | + | 6093:16170-16189 | None:intergenic | 30.0% |
| !!! | TTAACATTTTCGATTTGGCA+AGG | - | 6093:14985-15004 | MS.gene88821:intron | 30.0% |
| AAATCTCAAAAATGGTGGCA+AGG | - | 6093:16944-16963 | MS.gene88821:intron | 35.0% | |
| AAATTGGTCCATGTAGGTTA+AGG | - | 6093:15897-15916 | MS.gene88821:CDS | 35.0% | |
| AATCTCAAAAATGGTGGCAA+GGG | - | 6093:16945-16964 | MS.gene88821:intron | 35.0% | |
| AATGGAAAATATCAGAGGAC+TGG | - | 6093:17134-17153 | MS.gene88821:intron | 35.0% | |
| AATTGGTCCATGTAGGTTAA+GGG | - | 6093:15898-15917 | MS.gene88821:CDS | 35.0% | |
| ATGGAAAATATCAGAGGACT+GGG | - | 6093:17135-17154 | MS.gene88821:intron | 35.0% | |
| ATGTCAGATCATAAATCACC+GGG | - | 6093:18041-18060 | MS.gene88821:intron | 35.0% | |
| ATGTGAGATCTGAGCAAAAT+TGG | + | 6093:14720-14739 | None:intergenic | 35.0% | |
| ATTTCTTCCACATCTTGCTT+AGG | + | 6093:17365-17384 | None:intergenic | 35.0% | |
| CATGTCAGATCATAAATCAC+CGG | - | 6093:18040-18059 | MS.gene88821:intron | 35.0% | |
| CATTGACAGAGAAAAAGATG+GGG | - | 6093:16471-16490 | MS.gene88821:intron | 35.0% | |
| CGACACTAATGATGTTACTA+TGG | - | 6093:17178-17197 | MS.gene88821:intron | 35.0% | |
| GAATCTGGAAAAGAGTAAGT+TGG | + | 6093:14958-14977 | None:intergenic | 35.0% | |
| GATGTTAGAAAGTGAGCAAA+AGG | + | 6093:16918-16937 | None:intergenic | 35.0% | |
| GCCTTATATCTCCAATATCA+AGG | - | 6093:17033-17052 | MS.gene88821:intron | 35.0% | |
| GGAAAACTGTTCCATTATGT+TGG | - | 6093:15603-15622 | MS.gene88821:CDS | 35.0% | |
| GTAGTGAAATTTGAGAAGAC+TGG | + | 6093:16822-16841 | None:intergenic | 35.0% | |
| GTCCAAATAGAATTGTGCAT+AGG | + | 6093:17237-17256 | None:intergenic | 35.0% | |
| TACAAATGTCAAGAAGCTGA+TGG | - | 6093:15815-15834 | MS.gene88821:CDS | 35.0% | |
| TAGGTAGAAAGATGTTTGAG+AGG | - | 6093:16287-16306 | MS.gene88821:CDS | 35.0% | |
| TATTGGAGATATAAGGCTAC+TGG | + | 6093:17030-17049 | None:intergenic | 35.0% | |
| TCAGCAAATCTCAAAAATGG+TGG | - | 6093:16939-16958 | MS.gene88821:intron | 35.0% | |
| TCAGTGTAATTCTTAGTACC+TGG | - | 6093:15172-15191 | MS.gene88821:CDS | 35.0% | |
| TCATCACTGTATCCTGAAAA+TGG | - | 6093:17116-17135 | MS.gene88821:intron | 35.0% | |
| TCCTCAGCAAATCTCAAAAA+TGG | - | 6093:16936-16955 | MS.gene88821:intron | 35.0% | |
| TCTGCAGGAAATATCAAATG+GGG | - | 6093:18156-18175 | MS.gene88821:intron | 35.0% | |
| TGGAAGAAATAGAAGCTTAC+CGG | - | 6093:17375-17394 | MS.gene88821:intron | 35.0% | |
| TGGTTATGTAGTAACTAGAG+AGG | + | 6093:14697-14716 | None:intergenic | 35.0% | |
| TGTCAATGCAAGTCAAGAAA+GGG | + | 6093:16459-16478 | None:intergenic | 35.0% | |
| TGTTGTAACGTGACTGAAAA+CGG | + | 6093:15060-15079 | None:intergenic | 35.0% | |
| TTAATCTGCCACCATTATGA+GGG | + | 6093:17274-17293 | None:intergenic | 35.0% | |
| TTCATCCAATGAAGATTCGA+CGG | - | 6093:16013-16032 | MS.gene88821:CDS | 35.0% | |
| TTGAAAATCACGAGACAGTA+TGG | + | 6093:14905-14924 | None:intergenic | 35.0% | |
| TTGATATTTCCTGCAGATTC+TGG | + | 6093:18153-18172 | None:intergenic | 35.0% | |
| ! | AAAGCTACTCACTGTGTTTT+AGG | + | 6093:16183-16202 | None:intergenic | 35.0% |
| ! | ACAGTGAGTAGCTTTTATCT+TGG | - | 6093:16188-16207 | MS.gene88821:CDS | 35.0% |
| ! | GCATTGACAGAGAAAAAGAT+GGG | - | 6093:16470-16489 | MS.gene88821:intron | 35.0% |
| ! | TCCATGAGAGTATGATTATC+AGG | + | 6093:18098-18117 | None:intergenic | 35.0% |
| ! | TCTTGTTTCAGTTCACAGAA+AGG | - | 6093:16513-16532 | MS.gene88821:intron | 35.0% |
| ! | TGCATTGACAGAGAAAAAGA+TGG | - | 6093:16469-16488 | MS.gene88821:intron | 35.0% |
| ! | TTTGAAGTTGCTCTTCTCTA+TGG | + | 6093:17774-17793 | None:intergenic | 35.0% |
| ! | TTTTAAACTGGTTGTTCCAC+AGG | - | 6093:15582-15601 | MS.gene88821:CDS | 35.0% |
| !! | AATGGAGCACTGTATTAGTT+GGG | - | 6093:15276-15295 | MS.gene88821:CDS | 35.0% |
| !! | ATAATGGAACAGTTTTCCTG+TGG | + | 6093:15601-15620 | None:intergenic | 35.0% |
| !!! | ACCATTTTTGAGATTTGCTG+AGG | + | 6093:16940-16959 | None:intergenic | 35.0% |
| AAAAAGATGGGGAGGTTGTT+TGG | - | 6093:16482-16501 | MS.gene88821:intron | 40.0% | |
| AAAAGATGGGGAGGTTGTTT+GGG | - | 6093:16483-16502 | MS.gene88821:intron | 40.0% | |
| AACTCAACCCTTAACCTACA+TGG | + | 6093:15908-15927 | None:intergenic | 40.0% | |
| AATCACGAGACAGTATGGTA+TGG | + | 6093:14900-14919 | None:intergenic | 40.0% | |
| AATCCTCCATTCCCTCATAA+TGG | - | 6093:17260-17279 | MS.gene88821:intron | 40.0% | |
| AGAAATTTCTCCAACGTGAG+AGG | - | 6093:15537-15556 | MS.gene88821:CDS | 40.0% | |
| AGAAGCTTGCGAGAAAGAAA+GGG | - | 6093:18218-18237 | MS.gene88821:CDS | 40.0% | |
| AGAATTGTGCATAGGTAGCA+GGG | + | 6093:17229-17248 | None:intergenic | 40.0% | |
| AGCTGTGTTTCATGAGCATA+TGG | + | 6093:16789-16808 | None:intergenic | 40.0% | |
| ATATGCTCATGAAACACAGC+TGG | - | 6093:16788-16807 | MS.gene88821:intron | 40.0% | |
| ATGCAGAGGTTGACTATAGA+AGG | - | 6093:18192-18211 | MS.gene88821:intron | 40.0% | |
| ATTCAAAGCTCATGAGACTC+AGG | - | 6093:17547-17566 | MS.gene88821:intron | 40.0% | |
| CATAGTATCAGCGGAACAAT+AGG | - | 6093:15234-15253 | MS.gene88821:CDS | 40.0% | |
| CATCTCAATAACTAGAGCCT+TGG | - | 6093:17830-17849 | MS.gene88821:intron | 40.0% | |
| CATGCTTTGCATAGTATCAG+CGG | - | 6093:15225-15244 | MS.gene88821:CDS | 40.0% | |
| CCAAAGTAGAAAGCAACGAA+AGG | + | 6093:14790-14809 | None:intergenic | 40.0% | |
| CCTTCATATCCATCACATAC+AGG | + | 6093:17644-17663 | None:intergenic | 40.0% | |
| CGTGGAGATTTCTGATGTAA+TGG | - | 6093:17445-17464 | MS.gene88821:intron | 40.0% | |
| CTGGCTGATCCATTATTATC+AGG | + | 6093:16570-16589 | None:intergenic | 40.0% | |
| CTGTCAATGCAAGTCAAGAA+AGG | + | 6093:16460-16479 | None:intergenic | 40.0% | |
| CTTAATCTGCCACCATTATG+AGG | + | 6093:17275-17294 | None:intergenic | 40.0% | |
| GAAATTTCTCCAACGTGAGA+GGG | - | 6093:15538-15557 | MS.gene88821:CDS | 40.0% | |
| GCCTGATAATCATACTCTCA+TGG | - | 6093:18094-18113 | MS.gene88821:intron | 40.0% | |
| GGAAGAAATAGAAGCTTACC+GGG | - | 6093:17376-17395 | MS.gene88821:intron | 40.0% | |
| GTCGCATACATCGTATTTGA+AGG | + | 6093:16762-16781 | None:intergenic | 40.0% | |
| GTGAAATTTGAGAAGACTGG+AGG | + | 6093:16819-16838 | None:intergenic | 40.0% | |
| GTTTCAGTTCACAGAAAGGT+GGG | - | 6093:16517-16536 | MS.gene88821:intron | 40.0% | |
| TAGAAGTCCTAAGCAAGATG+TGG | - | 6093:17355-17374 | MS.gene88821:intron | 40.0% | |
| TAGAATTGTGCATAGGTAGC+AGG | + | 6093:17230-17249 | None:intergenic | 40.0% | |
| TATAACCACCAGTCAATACG+TGG | - | 6093:17427-17446 | MS.gene88821:intron | 40.0% | |
| TCAAATACGATGTATGCGAC+TGG | - | 6093:16762-16781 | MS.gene88821:intron | 40.0% | |
| TCACCAGAGTTCCTTGATAT+TGG | + | 6093:17047-17066 | None:intergenic | 40.0% | |
| TCAGTCAAATTGGTCCATGT+AGG | - | 6093:15891-15910 | MS.gene88821:CDS | 40.0% | |
| TCATCCAATGAAGATTCGAC+GGG | - | 6093:16014-16033 | MS.gene88821:CDS | 40.0% | |
| TCATTATCTGCAAACTCACC+TGG | - | 6093:16732-16751 | MS.gene88821:intron | 40.0% | |
| TCTATAGTCAACCTCTGCAT+CGG | + | 6093:18192-18211 | None:intergenic | 40.0% | |
| TCTCCAATATCAAGGAACTC+TGG | - | 6093:17041-17060 | MS.gene88821:intron | 40.0% | |
| TCTTGCTTAGGACTTCTAGA+AGG | + | 6093:17353-17372 | None:intergenic | 40.0% | |
| TGAGATCTGAGCAAAATTGG+TGG | + | 6093:14717-14736 | None:intergenic | 40.0% | |
| TGATGTTACTATGGCATCAC+AGG | - | 6093:17187-17206 | MS.gene88821:intron | 40.0% | |
| TGCAGAGGTTGACTATAGAA+GGG | - | 6093:18193-18212 | MS.gene88821:intron | 40.0% | |
| TGTTTCAGTTCACAGAAAGG+TGG | - | 6093:16516-16535 | MS.gene88821:intron | 40.0% | |
| TTATCAGGAATACGAGATGC+AGG | + | 6093:16555-16574 | None:intergenic | 40.0% | |
| TTGTTAAGTGAGCCAACTCT+GGG | + | 6093:16875-16894 | None:intergenic | 40.0% | |
| ! | AAGTGAGCAAAAGGTACATC+TGG | + | 6093:16909-16928 | None:intergenic | 40.0% |
| ! | AGAAATCTCCACGTATTGAC+TGG | + | 6093:17438-17457 | None:intergenic | 40.0% |
| ! | AGTGAGCAAAAGGTACATCT+GGG | + | 6093:16908-16927 | None:intergenic | 40.0% |
| ! | CCTTTCGTTGCTTTCTACTT+TGG | - | 6093:14787-14806 | MS.gene88821:intron | 40.0% |
| ! | TATGAGGGAATGGAGGATTT+TGG | + | 6093:17259-17278 | None:intergenic | 40.0% |
| !! | AAGTGTTGATATGTACCCCA+AGG | + | 6093:15369-15388 | None:intergenic | 40.0% |
| !! | ATTGATTTGCCAGAGGTCAA+GGG | + | 6093:17491-17510 | None:intergenic | 40.0% |
| !! | CCTGTATGTGATGGATATGA+AGG | - | 6093:17641-17660 | MS.gene88821:intron | 40.0% |
| !! | CTTTTCTTCGGGTTTGTGAT+TGG | - | 6093:16082-16101 | MS.gene88821:CDS | 40.0% |
| !! | GAATGGAGCACTGTATTAGT+TGG | - | 6093:15275-15294 | MS.gene88821:CDS | 40.0% |
| !! | TTCCATCATTGATTTGCCAG+AGG | + | 6093:17498-17517 | None:intergenic | 40.0% |
| !! | TTTCGATTTGGCAAGGTTGA+CGG | - | 6093:14992-15011 | MS.gene88821:intron | 40.0% |
| !!! | AGGTTTTGGTTGGAAAAGAC+AGG | + | 6093:15502-15521 | None:intergenic | 40.0% |
| AAAGCTCATGAGACTCAGGT+GGG | - | 6093:17551-17570 | MS.gene88821:intron | 45.0% | |
| AAATATCAGAGGACTGGGTC+TGG | - | 6093:17140-17159 | MS.gene88821:intron | 45.0% | |
| AATATCAGAGGACTGGGTCT+GGG | - | 6093:17141-17160 | MS.gene88821:intron | 45.0% | |
| ACAGTGATGAATCCCACTGT+GGG | + | 6093:17106-17125 | None:intergenic | 45.0% | |
| ACTACATATTCGCTCTACCC+TGG | - | 6093:16996-17015 | MS.gene88821:intron | 45.0% | |
| AGACTCGGATGCTCAATCTA+CGG | - | 6093:17304-17323 | MS.gene88821:intron | 45.0% | |
| AGCTATGCCTGTGACTTGAT+TGG | + | 6093:16625-16644 | None:intergenic | 45.0% | |
| AGGAAGGGCAGAATGTGTAA+AGG | + | 6093:16682-16701 | None:intergenic | 45.0% | |
| CAGAAGCTTGCGAGAAAGAA+AGG | - | 6093:18217-18236 | MS.gene88821:CDS | 45.0% | |
| CATCCAATGAAGATTCGACG+GGG | - | 6093:16015-16034 | MS.gene88821:CDS | 45.0% | |
| CGACAAAACAAACCAGCCTT+GGG | - | 6093:15350-15369 | MS.gene88821:CDS | 45.0% | |
| CTCATCTGCACTGAAACCAA+AGG | + | 6093:17405-17424 | None:intergenic | 45.0% | |
| CTTGGCATGACTAGTAGATG+CGG | - | 6093:16206-16225 | MS.gene88821:CDS | 45.0% | |
| GACAAAACAAACCAGCCTTG+GGG | - | 6093:15351-15370 | MS.gene88821:CDS | 45.0% | |
| GACCTCTGGCAAATCAATGA+TGG | - | 6093:17493-17512 | MS.gene88821:intron | 45.0% | |
| GAGCTGTTGCTACAATATCC+CGG | + | 6093:18062-18081 | None:intergenic | 45.0% | |
| GATCAGCCAGTCAACCAAAT+GGG | - | 6093:16580-16599 | MS.gene88821:intron | 45.0% | |
| GCAGAATGTGTAAAGGATGC+TGG | + | 6093:16675-16694 | None:intergenic | 45.0% | |
| GCAGAGGTTGACTATAGAAG+GGG | - | 6093:18194-18213 | MS.gene88821:intron | 45.0% | |
| GGATATTGTAGCAACAGCTC+TGG | - | 6093:18062-18081 | MS.gene88821:intron | 45.0% | |
| GTAAAGGATGCTGGTGAAGA+AGG | + | 6093:16666-16685 | None:intergenic | 45.0% | |
| GTGGAAATGGACATCAGAGT+AGG | - | 6093:17327-17346 | MS.gene88821:intron | 45.0% | |
| GTTGTTAAGTGAGCCAACTC+TGG | + | 6093:16876-16895 | None:intergenic | 45.0% | |
| TACAGTGATGAATCCCACTG+TGG | + | 6093:17107-17126 | None:intergenic | 45.0% | |
| TGACAGAGAAAAAGATGGGG+AGG | - | 6093:16474-16493 | MS.gene88821:intron | 45.0% | |
| TGACTGTGCAGTTGAAGGAA+GGG | + | 6093:16697-16716 | None:intergenic | 45.0% | |
| TGTTAAGTGAGCCAACTCTG+GGG | + | 6093:16874-16893 | None:intergenic | 45.0% | |
| TTATCTGCAAACTCACCTGG+CGG | - | 6093:16735-16754 | MS.gene88821:intron | 45.0% | |
| TTCTTTGCTTGCTTGCCAAC+TGG | + | 6093:17614-17633 | None:intergenic | 45.0% | |
| ! | AAAAGGTACATCTGGGGAAG+AGG | + | 6093:16901-16920 | None:intergenic | 45.0% |
| ! | AAAGGTACATCTGGGGAAGA+GGG | + | 6093:16900-16919 | None:intergenic | 45.0% |
| ! | AAGAGGCACAATAGATGAGC+AGG | + | 6093:15107-15126 | None:intergenic | 45.0% |
| ! | GTGAGCAAAAGGTACATCTG+GGG | + | 6093:16907-16926 | None:intergenic | 45.0% |
| ! | TCAAGAAGCTGATGGTGACT+AGG | - | 6093:15823-15842 | MS.gene88821:CDS | 45.0% |
| !! | AATCTCCACGTATTGACTGG+TGG | + | 6093:17435-17454 | None:intergenic | 45.0% |
| !! | CATTGATTTGCCAGAGGTCA+AGG | + | 6093:17492-17511 | None:intergenic | 45.0% |
| !!! | TTATTTTATAAAAGATAAAA+TGG | + | 6093:17972-17991 | None:intergenic | 5.0% |
| !!! | TTTTATTAATTTTTTTTGAA+TGG | - | 6093:15258-15277 | MS.gene88821:CDS | 5.0% |
| AAGGATGCTGGTGAAGAAGG+TGG | + | 6093:16663-16682 | None:intergenic | 50.0% | |
| ACACCCCGTCGAATCTTCAT+TGG | + | 6093:16021-16040 | None:intergenic | 50.0% | |
| ATCGTATTTGAAGGACCGCC+AGG | + | 6093:16753-16772 | None:intergenic | 50.0% | |
| ATTGGTCAACCCAGCCACTT+GGG | + | 6093:16607-16626 | None:intergenic | 50.0% | |
| CAAAGCTCATGAGACTCAGG+TGG | - | 6093:17550-17569 | MS.gene88821:intron | 50.0% | |
| CAAGCAGTCAAAGAGACACC+AGG | - | 6093:15942-15961 | MS.gene88821:CDS | 50.0% | |
| CACTGAAACCAAAGGATGCC+CGG | + | 6093:17397-17416 | None:intergenic | 50.0% | |
| CCACCATTATGAGGGAATGG+AGG | + | 6093:17266-17285 | None:intergenic | 50.0% | |
| CCTCCATTCCCTCATAATGG+TGG | - | 6093:17263-17282 | MS.gene88821:intron | 50.0% | |
| CTGCCACCATTATGAGGGAA+TGG | + | 6093:17269-17288 | None:intergenic | 50.0% | |
| GAAGGTGGAGCTAAGAGAGA+AGG | + | 6093:16648-16667 | None:intergenic | 50.0% | |
| GACTCGGATGCTCAATCTAC+GGG | - | 6093:17305-17324 | MS.gene88821:intron | 50.0% | |
| GAGAGGAGCAGTAGATGGTT+CGG | + | 6093:16844-16863 | None:intergenic | 50.0% | |
| GCGACAAAACAAACCAGCCT+TGG | - | 6093:15349-15368 | MS.gene88821:CDS | 50.0% | |
| GCTCAATCTACGGGTGGAAA+TGG | - | 6093:17314-17333 | MS.gene88821:intron | 50.0% | |
| GGAGATATAAGGCTACTGGC+AGG | + | 6093:17026-17045 | None:intergenic | 50.0% | |
| GGATCAGCCAGTCAACCAAA+TGG | - | 6093:16579-16598 | MS.gene88821:intron | 50.0% | |
| GGGTTGACCAATCAAGTCAC+AGG | - | 6093:16615-16634 | MS.gene88821:intron | 50.0% | |
| GTGACTGTGCAGTTGAAGGA+AGG | + | 6093:16698-16717 | None:intergenic | 50.0% | |
| GTTAAGTGAGCCAACTCTGG+GGG | + | 6093:16873-16892 | None:intergenic | 50.0% | |
| GTTATCATGCTCCGATGCAG+AGG | - | 6093:18178-18197 | MS.gene88821:intron | 50.0% | |
| GTTGATATGTACCCCAAGGC+TGG | + | 6093:15365-15384 | None:intergenic | 50.0% | |
| TGGGATCATCCAGAATCTGC+AGG | - | 6093:18141-18160 | MS.gene88821:intron | 50.0% | |
| TGTCAACCTCTTTCCCTGAG+CGG | - | 6093:17072-17091 | MS.gene88821:intron | 50.0% | |
| ! | CTTGGTGACTGTGCAGTTGA+AGG | + | 6093:16702-16721 | None:intergenic | 50.0% |
| AAACTCCCGCTCAGGGAAAG+AGG | + | 6093:17081-17100 | None:intergenic | 55.0% | |
| ACCATGATGCCCTTGACCTC+TGG | - | 6093:17479-17498 | MS.gene88821:intron | 55.0% | |
| CGATTAGACGCGAGTCCAGT+TGG | - | 6093:17596-17615 | MS.gene88821:intron | 55.0% | |
| CTGGACTCGCGTCTAATCGA+AGG | + | 6093:17595-17614 | None:intergenic | 55.0% | |
| GAAGCTTACCGGGCATCCTT+TGG | - | 6093:17386-17405 | MS.gene88821:intron | 55.0% | |
| GGAGTGAGAGGAGCAGTAGA+TGG | + | 6093:16849-16868 | None:intergenic | 55.0% | |
| GTCAACCTCTTTCCCTGAGC+GGG | - | 6093:17073-17092 | MS.gene88821:intron | 55.0% | |
| TCAACCAAATGGGCCCCAAG+TGG | - | 6093:16590-16609 | MS.gene88821:intron | 55.0% | |
| TCGGATGCTCAATCTACGGG+TGG | - | 6093:17308-17327 | MS.gene88821:intron | 55.0% | |
| TTGGGGCCCATTTGGTTGAC+TGG | + | 6093:16589-16608 | None:intergenic | 55.0% | |
| TTGGTCAACCCAGCCACTTG+GGG | + | 6093:16606-16625 | None:intergenic | 55.0% | |
| ! | GATTGGTCAACCCAGCCACT+TGG | + | 6093:16608-16627 | None:intergenic | 55.0% |
| ACTGGGTCTGGGAGGGTTTC+TGG | - | 6093:17152-17171 | MS.gene88821:intron | 60.0% | |
| AGGCTACTGGCAGGACTTCC+AGG | + | 6093:17017-17036 | None:intergenic | 60.0% | |
| ATCAGAGGACTGGGTCTGGG+AGG | - | 6093:17144-17163 | MS.gene88821:intron | 60.0% | |
| CAAATGGGCCCCAAGTGGCT+GGG | - | 6093:16595-16614 | MS.gene88821:intron | 60.0% | |
| CTGGGTCTGGGAGGGTTTCT+GGG | - | 6093:17153-17172 | MS.gene88821:intron | 60.0% | |
| GGCTACTGGCAGGACTTCCA+GGG | + | 6093:17016-17035 | None:intergenic | 60.0% | |
| TCAGAGGACTGGGTCTGGGA+GGG | - | 6093:17145-17164 | MS.gene88821:intron | 60.0% | |
| TCTCACTCCTCCCCCAGAGT+TGG | - | 6093:16860-16879 | MS.gene88821:intron | 60.0% | |
| TTGGGTGCACCCTCTCACGT+TGG | + | 6093:15550-15569 | None:intergenic | 60.0% | |
| ! | AACTCTGGGGGAGGAGTGAG+AGG | + | 6093:16861-16880 | None:intergenic | 60.0% |
| ! | AAGTGAGCCAACTCTGGGGG+AGG | + | 6093:16870-16889 | None:intergenic | 60.0% |
| !! | GCCAGAGGTCAAGGGCATCA+TGG | + | 6093:17483-17502 | None:intergenic | 60.0% |
| AGCGGGAGTTTCGCCCACAG+TGG | - | 6093:17090-17109 | MS.gene88821:intron | 65.0% | |
| CCAAATGGGCCCCAAGTGGC+TGG | - | 6093:16594-16613 | MS.gene88821:intron | 65.0% | |
| CCAGCCACTTGGGGCCCATT+TGG | + | 6093:16597-16616 | None:intergenic | 65.0% | |
| GCGGGAGTTTCGCCCACAGT+GGG | - | 6093:17091-17110 | MS.gene88821:intron | 65.0% | |
| GTGGGCGAAACTCCCGCTCA+GGG | + | 6093:17088-17107 | None:intergenic | 65.0% | |
| TGTGGGCGAAACTCCCGCTC+AGG | + | 6093:17089-17108 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 6093 | gene | 14567 | 18247 | 14567 | ID=MS.gene88821 |
| 6093 | mRNA | 14567 | 18247 | 14567 | ID=MS.gene88821.t1;Parent=MS.gene88821 |
| 6093 | exon | 18209 | 18247 | 18209 | ID=MS.gene88821.t1.exon1;Parent=MS.gene88821.t1 |
| 6093 | CDS | 18209 | 18247 | 18209 | ID=cds.MS.gene88821.t1;Parent=MS.gene88821.t1 |
| 6093 | exon | 15152 | 16334 | 15152 | ID=MS.gene88821.t1.exon2;Parent=MS.gene88821.t1 |
| 6093 | CDS | 15152 | 16334 | 15152 | ID=cds.MS.gene88821.t1;Parent=MS.gene88821.t1 |
| 6093 | exon | 14567 | 14766 | 14567 | ID=MS.gene88821.t1.exon3;Parent=MS.gene88821.t1 |
| 6093 | CDS | 14567 | 14766 | 14567 | ID=cds.MS.gene88821.t1;Parent=MS.gene88821.t1 |
| Gene Sequence |
| Protein sequence |
