AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88871

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88871.t1 MTR_1g097690 91.047 659 9 4 2 659 3 612 0.0 1207
MS.gene88871.t1 MTR_1g097690 89.299 542 8 4 2 542 3 495 0.0 962
MS.gene88871.t1 MTR_6g042240 63.969 655 201 6 6 655 2 626 0.0 789
MS.gene88871.t1 MTR_6g042240 64.407 649 196 6 12 655 21 639 0.0 787
MS.gene88871.t1 MTR_6g042240 65.000 600 177 4 61 655 15 586 0.0 770
MS.gene88871.t1 MTR_5g014090 40.000 670 326 17 6 649 2 621 6.77e-144 433
MS.gene88871.t1 MTR_4g098850 38.695 659 276 14 10 643 283 838 5.67e-140 430
MS.gene88871.t1 MTR_4g098850 50.481 208 100 2 442 646 2 209 5.34e-66 233
MS.gene88871.t1 MTR_5g014090 35.816 564 281 15 11 547 7 516 6.62e-95 303
MS.gene88871.t1 MTR_1g071680 50.890 281 132 3 382 656 272 552 1.21e-93 300
MS.gene88871.t1 MTR_1g071680 33.702 181 112 2 11 191 7 179 4.56e-20 94.7
MS.gene88871.t1 MTR_5g006820 55.172 261 110 4 395 649 351 610 1.37e-93 302
MS.gene88871.t1 MTR_5g006820 33.714 175 102 2 21 191 17 181 2.65e-19 92.4
MS.gene88871.t1 MTR_7g095260 50.554 271 128 3 393 657 231 501 1.27e-91 293
MS.gene88871.t1 MTR_7g095260 40.708 113 67 0 79 191 15 127 5.59e-19 90.9
MS.gene88871.t1 MTR_7g095260 51.119 268 125 3 396 657 286 553 5.07e-91 293
MS.gene88871.t1 MTR_7g095260 36.000 175 103 3 17 191 14 179 1.57e-21 99.4
MS.gene88871.t1 MTR_1g103330 52.256 266 120 4 396 655 313 577 1.36e-90 293
MS.gene88871.t1 MTR_1g103330 32.402 179 105 3 17 191 13 179 8.47e-20 94.0
MS.gene88871.t1 MTR_8g043480 55.085 236 99 3 398 626 45 280 1.25e-86 273
MS.gene88871.t1 MTR_8g043480 55.085 236 99 3 398 626 175 410 2.74e-85 275
MS.gene88871.t1 MTR_8g043480 45.833 72 39 0 102 173 8 79 4.45e-15 78.6
MS.gene88871.t1 MTR_8g043480 55.085 236 99 3 398 626 240 475 5.26e-85 276
MS.gene88871.t1 MTR_8g043480 41.111 90 53 0 84 173 55 144 4.18e-16 82.0
MS.gene88871.t1 MTR_7g100070 52.263 243 104 5 401 639 175 409 3.80e-81 264
MS.gene88871.t1 MTR_7g100070 34.637 179 92 5 17 186 11 173 3.97e-19 91.3
MS.gene88871.t1 MTR_7g100070 52.263 243 104 5 401 639 174 408 4.28e-81 264
MS.gene88871.t1 MTR_7g100070 47.826 92 47 1 96 186 81 172 1.95e-18 89.0
MS.gene88871.t1 MTR_7g100070 52.263 243 104 5 401 639 215 449 3.34e-80 263
MS.gene88871.t1 MTR_7g100070 34.637 179 92 5 17 186 51 213 3.11e-19 91.7
MS.gene88871.t1 MTR_8g091360 48.473 262 128 4 395 649 312 573 4.72e-78 260
MS.gene88871.t1 MTR_8g091360 54.167 72 33 0 102 173 139 210 2.70e-17 86.3
MS.gene88871.t1 MTR_6g072010 50.000 230 111 2 401 626 155 384 2.11e-77 252
MS.gene88871.t1 MTR_6g072010 45.161 93 48 2 105 196 47 137 6.10e-17 84.0
MS.gene88871.t1 MTR_6g072010 50.000 230 111 2 401 626 166 395 3.16e-77 252
MS.gene88871.t1 MTR_6g072010 45.161 93 48 2 105 196 58 148 7.11e-17 83.6
MS.gene88871.t1 MTR_1g038810 52.586 232 104 2 401 626 176 407 3.75e-77 253
MS.gene88871.t1 MTR_1g038810 37.288 118 67 3 58 174 20 131 2.06e-12 70.1
MS.gene88871.t1 MTR_1g038810 52.586 232 104 2 401 626 180 411 4.74e-77 253
MS.gene88871.t1 MTR_1g038810 37.705 122 65 4 58 174 20 135 1.36e-13 73.9
MS.gene88871.t1 MTR_6g009260 49.174 242 113 6 395 626 160 401 1.23e-67 228
MS.gene88871.t1 MTR_6g009260 49.351 77 37 1 99 173 51 127 2.37e-15 79.3
MS.gene88871.t1 MTR_8g091360 49.007 151 74 1 395 542 312 462 3.37e-46 171
MS.gene88871.t1 MTR_8g091360 54.167 72 33 0 102 173 139 210 2.45e-17 85.9
MS.gene88871.t1 MTR_6g092670 32.589 224 121 5 397 592 642 863 7.68e-33 135
MS.gene88871.t1 MTR_1g078100 31.982 222 122 6 396 592 326 543 3.92e-31 130
MS.gene88871.t1 MTR_1g078100 31.982 222 122 6 396 592 606 823 4.51e-31 130
MS.gene88871.t1 MTR_1g078100 31.982 222 122 6 396 592 337 554 4.96e-31 130
MS.gene88871.t1 MTR_1g021730 31.020 245 146 12 386 618 75 308 2.05e-18 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88871.t1 AT1G71710 55.213 681 239 15 6 650 11 661 0.0 688
MS.gene88871.t1 AT1G71710 55.213 681 239 15 6 650 2 652 0.0 688
MS.gene88871.t1 AT1G34120 49.686 636 239 11 14 644 27 586 0.0 557
MS.gene88871.t1 AT1G34120 49.843 636 234 12 14 644 27 582 0.0 557
MS.gene88871.t1 AT1G34120 49.528 636 239 12 14 644 27 585 0.0 551
MS.gene88871.t1 AT1G34120 50.507 493 175 9 157 644 3 431 6.12e-153 449
MS.gene88871.t1 AT1G34120 46.881 529 197 11 14 538 27 475 2.24e-135 405
MS.gene88871.t1 AT4G18010 54.440 259 115 2 386 641 377 635 1.67e-96 310
MS.gene88871.t1 AT2G32010 55.385 260 109 4 396 649 324 582 4.45e-94 303
MS.gene88871.t1 AT2G32010 48.837 86 44 0 106 191 93 178 2.87e-19 92.4
MS.gene88871.t1 AT2G32010 55.385 260 109 4 396 649 324 582 4.45e-94 303
MS.gene88871.t1 AT2G32010 48.837 86 44 0 106 191 93 178 2.87e-19 92.4
MS.gene88871.t1 AT2G32010 55.385 260 109 4 396 649 324 582 4.45e-94 303
MS.gene88871.t1 AT2G32010 48.837 86 44 0 106 191 93 178 2.87e-19 92.4
MS.gene88871.t1 AT2G32010 55.385 260 109 4 396 649 324 582 4.45e-94 303
MS.gene88871.t1 AT2G32010 48.837 86 44 0 106 191 93 178 2.87e-19 92.4
MS.gene88871.t1 AT3G63240 52.830 265 119 3 391 649 271 535 1.59e-93 300
MS.gene88871.t1 AT3G63240 36.364 165 89 3 11 173 7 157 5.16e-20 94.7
MS.gene88871.t1 AT3G63240 52.830 265 119 3 391 649 271 535 1.59e-93 300
MS.gene88871.t1 AT3G63240 36.364 165 89 3 11 173 7 157 5.16e-20 94.7
MS.gene88871.t1 AT1G05470 53.462 260 114 4 396 649 347 605 8.65e-92 297
MS.gene88871.t1 AT1G05470 34.146 164 100 2 10 173 6 161 4.43e-20 95.1
MS.gene88871.t1 AT1G05470 53.462 260 114 4 396 649 347 605 8.65e-92 297
MS.gene88871.t1 AT1G05470 34.146 164 100 2 10 173 6 161 4.43e-20 95.1
MS.gene88871.t1 AT5G65090 50.189 265 126 3 385 643 186 450 2.43e-83 270
MS.gene88871.t1 AT5G65090 49.315 73 37 0 102 174 8 80 2.82e-17 85.5
MS.gene88871.t1 AT5G65090 50.189 265 126 3 385 643 249 513 7.64e-83 271
MS.gene88871.t1 AT5G65090 49.315 73 37 0 102 174 71 143 3.50e-17 85.5
MS.gene88871.t1 AT5G65090 50.189 265 126 3 385 643 249 513 7.64e-83 271
MS.gene88871.t1 AT5G65090 49.315 73 37 0 102 174 71 143 3.50e-17 85.5
MS.gene88871.t1 AT5G04980 48.828 256 124 3 386 634 145 400 1.08e-80 261
MS.gene88871.t1 AT2G37440 54.237 236 102 4 397 628 112 345 1.09e-80 261
MS.gene88871.t1 AT2G37440 42.857 112 36 3 108 196 3 109 3.66e-14 75.5
MS.gene88871.t1 AT2G37440 54.237 236 102 4 397 628 193 426 3.70e-80 262
MS.gene88871.t1 AT2G37440 48.571 105 51 2 100 201 79 183 6.54e-19 90.9
MS.gene88871.t1 AT2G37440 54.237 236 102 4 397 628 193 426 3.70e-80 262
MS.gene88871.t1 AT2G37440 48.571 105 51 2 100 201 79 183 6.54e-19 90.9
MS.gene88871.t1 AT5G04980 48.828 256 124 3 386 634 180 435 6.02e-80 261
MS.gene88871.t1 AT5G04980 47.826 69 36 0 102 170 7 75 4.40e-14 75.5
MS.gene88871.t1 AT5G04980 48.828 256 124 3 386 634 180 435 6.02e-80 261
MS.gene88871.t1 AT5G04980 47.826 69 36 0 102 170 7 75 4.40e-14 75.5
MS.gene88871.t1 AT5G04980 49.219 256 123 3 386 634 209 464 7.53e-80 261
MS.gene88871.t1 AT5G04980 47.826 69 36 0 102 170 36 104 4.02e-14 75.9
MS.gene88871.t1 AT2G01900 51.220 246 112 3 401 640 155 398 1.02e-76 251
MS.gene88871.t1 AT2G01900 37.500 120 67 3 69 187 29 141 1.49e-14 76.6
MS.gene88871.t1 AT2G01900 51.220 246 112 3 401 640 163 406 1.51e-76 251
MS.gene88871.t1 AT2G01900 37.500 120 67 3 69 187 37 149 1.49e-14 76.6
MS.gene88871.t1 AT2G01900 50.204 245 107 3 401 640 155 389 4.72e-74 244
MS.gene88871.t1 AT2G01900 37.500 120 67 3 69 187 29 141 1.68e-14 76.6
MS.gene88871.t1 AT4G18010 53.659 205 92 2 386 587 377 581 1.23e-73 248
MS.gene88871.t1 AT1G65580 31.618 272 141 8 396 624 351 620 4.44e-35 142
MS.gene88871.t1 AT1G65580 31.618 272 141 8 396 624 617 886 5.26e-35 142
MS.gene88871.t1 AT2G31830 29.766 299 149 8 395 648 658 940 1.44e-33 138
MS.gene88871.t1 AT2G31830 29.766 299 149 8 395 648 658 940 1.73e-33 138
MS.gene88871.t1 AT2G31830 32.510 243 132 6 395 609 658 896 1.51e-32 135
MS.gene88871.t1 AT1G05630 31.416 226 125 5 395 592 649 872 3.05e-32 134
MS.gene88871.t1 AT2G43900 30.973 226 126 5 395 592 655 878 3.63e-32 134
MS.gene88871.t1 AT2G43900 30.973 226 126 5 395 592 655 878 3.91e-32 134
MS.gene88871.t1 AT1G05630 31.416 226 125 5 395 592 649 872 4.01e-32 133
MS.gene88871.t1 AT1G47510 35.714 210 110 9 418 618 70 263 3.51e-24 103
MS.gene88871.t1 AT1G47510 35.714 210 110 9 418 618 132 325 1.92e-23 102
MS.gene88871.t1 AT1G05630 46.067 89 46 2 506 592 818 906 5.55e-17 85.9
MS.gene88871.t1 AT1G47510 43.590 117 55 5 510 618 149 262 2.52e-15 77.0

Find 123 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTTGTTTATAGAATTTA+TGG 0.063950 1.1:+70279490 MS.gene88871:intron
GGTGAAGAACATAATTTATT+TGG 0.142900 1.1:+70281122 MS.gene88871:CDS
TGAATTAATCTCGTACTTAT+AGG 0.195385 1.1:-70283013 None:intergenic
TCATTGTCTGAATCAGTTTC+AGG 0.208520 1.1:-70279615 None:intergenic
AAAATGTTACTCGTGTTTAA+AGG 0.232239 1.1:-70280891 None:intergenic
AACTGTTGGTGTTGGTGTTA+TGG 0.238835 1.1:+70281742 MS.gene88871:CDS
AGAATTTCTTCTTCTATATC+TGG 0.254254 1.1:-70281056 None:intergenic
GCAAATGGCTTAACATTAAA+AGG 0.260784 1.1:+70279529 MS.gene88871:CDS
AGTGCTCGCTGTAGCTTCTT+TGG 0.278921 1.1:-70283442 None:intergenic
ACTGTTGGTGTTGGTGTTAT+GGG 0.280728 1.1:+70281743 MS.gene88871:CDS
TCTGATGGTTTAAACTTTGA+TGG 0.282944 1.1:-70281026 None:intergenic
TTATTTGCAGAAGAATAATT+TGG 0.290513 1.1:+70282406 MS.gene88871:intron
AACAGATGCTATAGATTTAC+TGG 0.299403 1.1:+70281577 MS.gene88871:CDS
GGTGTACGCCTCGCAACCTT+TGG 0.301674 1.1:-70283057 None:intergenic
GGGGAAGCCGGTCACGGATT+AGG 0.306749 1.1:+70279904 MS.gene88871:CDS
CTCATGATCCAAGATACTTT+TGG 0.312592 1.1:-70282096 None:intergenic
CAGAATTTCTCCCAGGCTTA+AGG 0.327355 1.1:+70280243 MS.gene88871:intron
ACCCGTGACTGCCACATATA+TGG 0.328230 1.1:+70283399 MS.gene88871:CDS
CTTATCAAAGAAGGTTGAAT+AGG 0.329509 1.1:+70281243 MS.gene88871:CDS
AAGCTATCTAGAATGATTAA+TGG 0.329819 1.1:+70281332 MS.gene88871:CDS
GGGAAGCCGGTCACGGATTA+GGG 0.338322 1.1:+70279905 MS.gene88871:CDS
GGTGAGGAGATTCATCCTTT+AGG 0.342847 1.1:+70281101 MS.gene88871:CDS
TGGACTTCCCAAAAGTATCT+TGG 0.350599 1.1:+70282088 MS.gene88871:CDS
GTTGGTGTTATGGGCTATAT+TGG 0.372990 1.1:+70281752 MS.gene88871:CDS
TTCAGTGCTTCATCTATGAT+TGG 0.386944 1.1:-70281158 None:intergenic
GAGTACCTGTTGTTGCTTGT+TGG 0.389738 1.1:-70279243 None:intergenic
CACAGCCAACAAGCAACAAC+AGG 0.389941 1.1:+70279238 MS.gene88871:CDS
CAACAATGGTCATGCGCAAA+TGG 0.392807 1.1:+70279514 MS.gene88871:CDS
AGCACTGAATATTAGTTTGA+AGG 0.396504 1.1:+70281172 MS.gene88871:CDS
CCTGCTGATATCTATGTCCT+TGG 0.397019 1.1:+70280496 MS.gene88871:CDS
ATGTGGCAGTCACGGGTCTA+TGG 0.397224 1.1:-70283393 None:intergenic
TCATGACAAGTTTCGGCACT+TGG 0.403840 1.1:+70283500 MS.gene88871:CDS
TTAGAAAGCGATAGTGATAT+TGG 0.406935 1.1:+70281080 MS.gene88871:CDS
GAAGAAGTCATGACAAGTTT+CGG 0.412405 1.1:+70283493 MS.gene88871:CDS
ATGACTTTGATATTGATGAT+TGG 0.413325 1.1:+70280458 MS.gene88871:CDS
GTCTTATTAAACGATTTAAC+CGG 0.414616 1.1:-70281518 None:intergenic
AGCTATCTAGAATGATTAAT+GGG 0.418456 1.1:+70281333 MS.gene88871:CDS
CGTATTCTATCACATGGAAA+TGG 0.418767 1.1:+70283325 MS.gene88871:CDS
CACATATATGGCAGAGGTTG+AGG 0.419355 1.1:+70283411 MS.gene88871:CDS
ATCAGTTATCTTATCAAAGA+AGG 0.426818 1.1:+70281234 MS.gene88871:CDS
GTGTACGCCTCGCAACCTTT+GGG 0.433772 1.1:-70283056 None:intergenic
GTTAGTGGGACTGAAAGAAT+TGG 0.433816 1.1:+70281425 MS.gene88871:CDS
TTTGTTGCCTCAGAAAGTAT+TGG 0.436972 1.1:+70281475 MS.gene88871:CDS
TCTTTGTTTATAGAATTTAT+GGG 0.438492 1.1:+70279491 MS.gene88871:intron
TACTCGTCCTGTACCGAAAT+GGG 0.439941 1.1:+70280926 MS.gene88871:CDS
TGCAGAAGAATAATTTGGTT+CGG 0.440082 1.1:+70282411 MS.gene88871:intron
AACAAATGTAATGGTGGCTC+TGG 0.447550 1.1:-70281458 None:intergenic
TCATCAATATCAAAGTCATT+AGG 0.451910 1.1:-70280454 None:intergenic
TTTCTATTAGAGTATGTGTT+GGG 0.452675 1.1:+70280404 MS.gene88871:intron
CCACCTTACGGCAGGTGAAA+AGG 0.453682 1.1:+70281989 MS.gene88871:CDS
ATACTCGTCCTGTACCGAAA+TGG 0.454190 1.1:+70280925 MS.gene88871:CDS
AAATTATGTTCTTCACCTAA+AGG 0.459993 1.1:-70281116 None:intergenic
TGCCATATATGTGGCAGTCA+CGG 0.462589 1.1:-70283401 None:intergenic
GGCAAAAGTCATTGACTGTA+AGG 0.470476 1.1:+70280267 MS.gene88871:CDS
ATCTTGAAGCTTTGATGAAG+AGG 0.470630 1.1:+70281609 MS.gene88871:CDS
AGCATTTCGTTTGATTTCAT+CGG 0.472148 1.1:-70282015 None:intergenic
CTTTATATGCACCCACCTTA+CGG 0.476641 1.1:+70281977 MS.gene88871:CDS
GGTTTAAACTTTGATGGAGA+TGG 0.477628 1.1:-70281020 None:intergenic
ATATCTGGTGCATCATCTGA+TGG 0.479222 1.1:-70281041 None:intergenic
GCCATATATGTGGCAGTCAC+GGG 0.485409 1.1:-70283400 None:intergenic
ATCTCGTACTTATAGGTTGG+TGG 0.485679 1.1:-70283006 None:intergenic
GATTAGTAAGCTATCTAGAA+TGG 0.486586 1.1:+70281403 MS.gene88871:CDS
TATCATATGGCAAGCTGATA+CGG 0.487049 1.1:-70282446 None:intergenic
TTAACCGGTTTAAAAGAAGT+TGG 0.498071 1.1:-70281503 None:intergenic
CTGAAAGAATTGGTTTGAGC+TGG 0.499133 1.1:+70281435 MS.gene88871:CDS
CTGCTGATATCTATGTCCTT+GGG 0.499146 1.1:+70280497 MS.gene88871:CDS
AACATGAAGGTTTCAACTGT+TGG 0.500406 1.1:+70281728 MS.gene88871:CDS
CAGGAGAGAGGATGAAGCTC+CGG 0.509164 1.1:+70279929 MS.gene88871:CDS
TGAGATTACTGAGTTACAAA+AGG 0.512142 1.1:+70283350 MS.gene88871:CDS
TCCTGTCCCTAATCCGTGAC+CGG 0.513210 1.1:-70279911 None:intergenic
AAGGTTTCAACTGTTGGTGT+TGG 0.514208 1.1:+70281734 MS.gene88871:CDS
TTAATCTCGTACTTATAGGT+TGG 0.517794 1.1:-70283009 None:intergenic
TTCTGAGGCAACAAATGTAA+TGG 0.523939 1.1:-70281467 None:intergenic
TGAACTGCAGAATTTCTCCC+AGG 0.530982 1.1:+70280236 MS.gene88871:intron
CCAAGGACATAGATATCAGC+AGG 0.535441 1.1:-70280496 None:intergenic
GCCGGTCACGGATTAGGGAC+AGG 0.536950 1.1:+70279910 MS.gene88871:CDS
TTAGAGTATGTGTTGGGACA+TGG 0.539774 1.1:+70280410 MS.gene88871:intron
ATTAATTCAGACAAGTACAT+TGG 0.541947 1.1:+70283027 MS.gene88871:CDS
TGTTCTGAATATGTTTCCGC+AGG 0.543544 1.1:-70281709 None:intergenic
CAGAGTGGGGAAGCCGGTCA+CGG 0.545381 1.1:+70279898 MS.gene88871:intron
TCATCACGGTATGGGTTCGA+AGG 0.552651 1.1:+70281684 MS.gene88871:CDS
CTTGTGAAAGAATTAGAGAA+AGG 0.553223 1.1:+70282946 MS.gene88871:CDS
TGTGTTGGGACATGGAATGT+TGG 0.555711 1.1:+70280418 MS.gene88871:CDS
TCTCGTACTTATAGGTTGGT+GGG 0.555840 1.1:-70283005 None:intergenic
TGGAGATGGAGGATCACTAA+AGG 0.558217 1.1:-70281006 None:intergenic
GAAACATATTCAGAACATGA+AGG 0.559314 1.1:+70281715 MS.gene88871:CDS
CTCAACCTCTGCCATATATG+TGG 0.563035 1.1:-70283410 None:intergenic
ATAGAATTTATGGGCAACAA+TGG 0.563404 1.1:+70279500 MS.gene88871:intron
AAGCTATCTAGAATGGTTAG+TGG 0.565033 1.1:+70281410 MS.gene88871:CDS
ATATGCACCCACCTTACGGC+AGG 0.566040 1.1:+70281981 MS.gene88871:CDS
GAAACTGATTCAGACAATGA+AGG 0.567354 1.1:+70279618 MS.gene88871:CDS
ATGGCTTAACATTAAAAGGA+AGG 0.567804 1.1:+70279533 MS.gene88871:CDS
TTAAACTTTGATGGAGATGG+AGG 0.571133 1.1:-70281017 None:intergenic
TAGTCACCATCTGATTCAGC+CGG 0.571583 1.1:-70279948 None:intergenic
AGCTATCTAGAATGGTTAGT+GGG 0.573263 1.1:+70281411 MS.gene88871:CDS
GGTCTCTCCAATACTTTCTG+AGG 0.576164 1.1:-70281482 None:intergenic
TGCGATCGTATTCTATCACA+TGG 0.579104 1.1:+70283319 MS.gene88871:CDS
TTTCCGCGAGGAAGATTCAT+CGG 0.585056 1.1:+70281274 MS.gene88871:CDS
ATTGTGCAGAGTGGGGAAGC+CGG 0.586219 1.1:+70279892 MS.gene88871:intron
TCAATATCAAAGTCATTAGG+TGG 0.586310 1.1:-70280451 None:intergenic
GACTGCCACATATATGGCAG+AGG 0.590077 1.1:+70283405 MS.gene88871:CDS
GTCTCAATATATAAACAAGA+AGG 0.590829 1.1:+70280289 MS.gene88871:CDS
GAAGCTCCGGCTGAATCAGA+TGG 0.599862 1.1:+70279942 MS.gene88871:CDS
CAAACTAAAGCATACCATGC+TGG 0.608342 1.1:-70283078 None:intergenic
ATAGTGAGCAAGCAGATGGT+TGG 0.609242 1.1:+70281656 MS.gene88871:CDS
GTTGGGACATGGAATGTTGG+AGG 0.610467 1.1:+70280421 MS.gene88871:CDS
AAGCGATAGTGATATTGGTG+AGG 0.614723 1.1:+70281085 MS.gene88871:CDS
AATTTCTCCCAGGCTTAAGG+AGG 0.618284 1.1:+70280246 MS.gene88871:CDS
ACGGATTAGGGACAGGAGAG+AGG 0.618825 1.1:+70279917 MS.gene88871:CDS
TATGGGCTATATTGGTAACA+AGG 0.624421 1.1:+70281760 MS.gene88871:CDS
TTCAGACAAGTACATTGGAG+AGG 0.633311 1.1:+70283032 MS.gene88871:CDS
GAGAGGACCCAAAGGTTGCG+AGG 0.634911 1.1:+70283049 MS.gene88871:CDS
TGAGGCAACAAATGTAATGG+TGG 0.637973 1.1:-70281464 None:intergenic
GGACATAGATATCAGCAGGA+TGG 0.644979 1.1:-70280492 None:intergenic
TTGCGAGGCGTACACCAGCA+TGG 0.653553 1.1:+70283064 MS.gene88871:CDS
TATGGGTTCGAAGGAGCCTG+CGG 0.674551 1.1:+70281693 MS.gene88871:CDS
GTACATTGGAGAGGACCCAA+AGG 0.674845 1.1:+70283041 MS.gene88871:CDS
GAAGATAGTGAGCAAGCAGA+TGG 0.678985 1.1:+70281652 MS.gene88871:CDS
ATGTTCGTGAAATACATCAG+AGG 0.682749 1.1:+70282039 MS.gene88871:CDS
AAAATTGGTTGAGAGAGACC+AGG 0.701785 1.1:+70282503 MS.gene88871:CDS
ATATAAACAAGAAGGAACTG+AGG 0.702635 1.1:+70280297 MS.gene88871:CDS
TTTCCGATGAATCTTCCTCG+CGG 0.752096 1.1:-70281277 None:intergenic
TAGGCTAAATCATTTCCGCG+AGG 0.776950 1.1:+70281262 MS.gene88871:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGTAATTAATAAAACAT+TGG + chr1.1:70279663-70279682 MS.gene88871:intron 10.0%
!!! TAATCACTTTTTTTTTTTTA+TGG + chr1.1:70280606-70280625 MS.gene88871:intron 10.0%
!! ATTTCTTTATAAATTCTAGT+CGG + chr1.1:70279354-70279373 MS.gene88871:intron 15.0%
!! TAAATTAACATATTTGAATG+TGG - chr1.1:70282141-70282160 None:intergenic 15.0%
!! TATTAAAAGTGATTTCAAAA+TGG - chr1.1:70280574-70280593 None:intergenic 15.0%
!! TTATGAGTATGATAAAAAAA+TGG - chr1.1:70283164-70283183 None:intergenic 15.0%
!! TTCTAATTTAATCATATAGA+AGG - chr1.1:70282276-70282295 None:intergenic 15.0%
!!! CATTTTTCGATTTAAATTTA+GGG - chr1.1:70280123-70280142 None:intergenic 15.0%
!!! TCTTTGTTTATAGAATTTAT+GGG + chr1.1:70279491-70279510 MS.gene88871:intron 15.0%
!!! TTACCTTAATTTTAATCAAA+AGG - chr1.1:70282192-70282211 None:intergenic 15.0%
!! AATCAGAAAGTGAATAAAAA+TGG - chr1.1:70282067-70282086 None:intergenic 20.0%
!! ATCAGAAAGTGAATAAAAAT+GGG - chr1.1:70282066-70282085 None:intergenic 20.0%
!! CCTAAATTTAAATCGAAAAA+TGG + chr1.1:70280121-70280140 MS.gene88871:intron 20.0%
!! GATTAATTTACTTCAATAGA+AGG - chr1.1:70282299-70282318 None:intergenic 20.0%
!! TCATGAAATCAAAATGAATA+AGG - chr1.1:70282872-70282891 None:intergenic 20.0%
!! TTATTTGCAGAAGAATAATT+TGG + chr1.1:70282406-70282425 MS.gene88871:intron 20.0%
!!! AAAGTGTTTTTATATACACT+TGG + chr1.1:70280799-70280818 MS.gene88871:intron 20.0%
!!! ATGCCTTTTGATTAAAATTA+AGG + chr1.1:70282186-70282205 MS.gene88871:intron 20.0%
!!! ATTTTGAACTCAAGTTAAAA+GGG + chr1.1:70282897-70282916 MS.gene88871:intron 20.0%
!!! CCATTTTTCGATTTAAATTT+AGG - chr1.1:70280124-70280143 None:intergenic 20.0%
!!! GTCTTTGTTTATAGAATTTA+TGG + chr1.1:70279490-70279509 MS.gene88871:intron 20.0%
!!! TTTTATTCACTTTCTGATTT+TGG + chr1.1:70282068-70282087 MS.gene88871:CDS 20.0%
! AAAATGTTACTCGTGTTTAA+AGG - chr1.1:70280894-70280913 None:intergenic 25.0%
! AAATTATGTTCTTCACCTAA+AGG - chr1.1:70281119-70281138 None:intergenic 25.0%
! AACAATGTCTTGAATTTACA+TGG + chr1.1:70282220-70282239 MS.gene88871:intron 25.0%
! AACATAGATAATCGTGTTTA+AGG + chr1.1:70282821-70282840 MS.gene88871:intron 25.0%
! AATGTTTGCAATTACCTTAT+AGG + chr1.1:70283296-70283315 MS.gene88871:intron 25.0%
! ACATAGATAATCGTGTTTAA+GGG + chr1.1:70282822-70282841 MS.gene88871:intron 25.0%
! ACCTTATCTATAATCTATGT+GGG + chr1.1:70279377-70279396 MS.gene88871:intron 25.0%
! ACGGAACATATATTTCTTAA+TGG - chr1.1:70282652-70282671 None:intergenic 25.0%
! AGAATTTCTTCTTCTATATC+TGG - chr1.1:70281059-70281078 None:intergenic 25.0%
! ATCAGTTATCTTATCAAAGA+AGG + chr1.1:70281234-70281253 MS.gene88871:CDS 25.0%
! ATTAATTCAGACAAGTACAT+TGG + chr1.1:70283027-70283046 MS.gene88871:CDS 25.0%
! ATTTGAAGATTTGGAAATTG+AGG + chr1.1:70279726-70279745 MS.gene88871:intron 25.0%
! CGATTATCTATGTTACAAAA+TGG - chr1.1:70282815-70282834 None:intergenic 25.0%
! GGTGAAGAACATAATTTATT+TGG + chr1.1:70281122-70281141 MS.gene88871:CDS 25.0%
! GTCTCAATATATAAACAAGA+AGG + chr1.1:70280289-70280308 MS.gene88871:CDS 25.0%
! TCATCAATATCAAAGTCATT+AGG - chr1.1:70280457-70280476 None:intergenic 25.0%
! TGAATTAATCTCGTACTTAT+AGG - chr1.1:70283016-70283035 None:intergenic 25.0%
! TGCATATACACTCAAATATA+AGG + chr1.1:70280548-70280567 MS.gene88871:intron 25.0%
! TTTCTATTAGAGTATGTGTT+GGG + chr1.1:70280404-70280423 MS.gene88871:intron 25.0%
!! AAGCTATCTAGAATGATTAA+TGG + chr1.1:70281332-70281351 MS.gene88871:CDS 25.0%
!! AGCTATCTAGAATGATTAAT+GGG + chr1.1:70281333-70281352 MS.gene88871:CDS 25.0%
!! ATCTTATCTCAAAAAAGCAT+TGG + chr1.1:70282478-70282497 MS.gene88871:CDS 25.0%
!! ATGACTTTGATATTGATGAT+TGG + chr1.1:70280458-70280477 MS.gene88871:CDS 25.0%
!! CTAAAGGATTTTATCTTTGA+AGG - chr1.1:70280993-70281012 None:intergenic 25.0%
!! GATTTTGAACTCAAGTTAAA+AGG + chr1.1:70282896-70282915 MS.gene88871:intron 25.0%
!! GTCTTATTAAACGATTTAAC+CGG - chr1.1:70281521-70281540 None:intergenic 25.0%
!! TCATTTTACTAAGAACAGTT+TGG - chr1.1:70283188-70283207 None:intergenic 25.0%
!! TGATCTGTCTCAATTTTATT+TGG + chr1.1:70279865-70279884 MS.gene88871:intron 25.0%
!! TTTTCTATTAGAGTATGTGT+TGG + chr1.1:70280403-70280422 MS.gene88871:intron 25.0%
!!! AAAAAAGCATTGGTCAAAAT+TGG + chr1.1:70282488-70282507 MS.gene88871:CDS 25.0%
!!! AGATCTCTTGTTTTATCATA+TGG - chr1.1:70282462-70282481 None:intergenic 25.0%
!!! CTTATTTTTATACTGGATAC+CGG + chr1.1:70279288-70279307 MS.gene88871:intron 25.0%
!!! GATCTGTCTCAATTTTATTT+GGG + chr1.1:70279866-70279885 MS.gene88871:intron 25.0%
!!! TATCAAGTTGATACATCTAA+TGG - chr1.1:70282541-70282560 None:intergenic 25.0%
!!! TTATTGATGTCTTATTTCTG+AGG + chr1.1:70282611-70282630 MS.gene88871:intron 25.0%
!!! TTTTGATTTGAAAGAATCAC+AGG - chr1.1:70281558-70281577 None:intergenic 25.0%
AACAGATGCTATAGATTTAC+TGG + chr1.1:70281577-70281596 MS.gene88871:CDS 30.0%
ACCAAAAACTACAAACTCTA+GGG - chr1.1:70281811-70281830 None:intergenic 30.0%
AGGCATTAGCATATAATTCA+AGG - chr1.1:70282172-70282191 None:intergenic 30.0%
ATAATCGTGTTTAAGGGTTT+AGG + chr1.1:70282828-70282847 MS.gene88871:intron 30.0%
ATAGAATTTATGGGCAACAA+TGG + chr1.1:70279500-70279519 MS.gene88871:intron 30.0%
ATATAAACAAGAAGGAACTG+AGG + chr1.1:70280297-70280316 MS.gene88871:CDS 30.0%
ATGGCTTAACATTAAAAGGA+AGG + chr1.1:70279533-70279552 MS.gene88871:CDS 30.0%
CGACTATTCATTTGAAGATT+TGG + chr1.1:70279717-70279736 MS.gene88871:intron 30.0%
CTTATCAAAGAAGGTTGAAT+AGG + chr1.1:70281243-70281262 MS.gene88871:CDS 30.0%
CTTGTGAAAGAATTAGAGAA+AGG + chr1.1:70282946-70282965 MS.gene88871:CDS 30.0%
GAAACATATTCAGAACATGA+AGG + chr1.1:70281715-70281734 MS.gene88871:CDS 30.0%
GACCTTATCTATAATCTATG+TGG + chr1.1:70279376-70279395 MS.gene88871:intron 30.0%
GATTAGTAAGCTATCTAGAA+TGG + chr1.1:70281325-70281344 MS.gene88871:CDS 30.0%
GATTTGGAAATTGAGGATTA+TGG + chr1.1:70279733-70279752 MS.gene88871:intron 30.0%
GCAAATGGCTTAACATTAAA+AGG + chr1.1:70279529-70279548 MS.gene88871:CDS 30.0%
TAATCGTGTTTAAGGGTTTA+GGG + chr1.1:70282829-70282848 MS.gene88871:intron 30.0%
TCAATATCAAAGTCATTAGG+TGG - chr1.1:70280454-70280473 None:intergenic 30.0%
TCCCACATAGATTATAGATA+AGG - chr1.1:70279381-70279400 None:intergenic 30.0%
TCTGATGGTTTAAACTTTGA+TGG - chr1.1:70281029-70281048 None:intergenic 30.0%
TGAGATTACTGAGTTACAAA+AGG + chr1.1:70283350-70283369 MS.gene88871:CDS 30.0%
TGCAGAAGAATAATTTGGTT+CGG + chr1.1:70282411-70282430 MS.gene88871:intron 30.0%
TTAATCTCGTACTTATAGGT+TGG - chr1.1:70283012-70283031 None:intergenic 30.0%
TTAGAAAGCGATAGTGATAT+TGG + chr1.1:70281080-70281099 MS.gene88871:CDS 30.0%
TTGACACCATTCAAAATTTG+TGG + chr1.1:70280094-70280113 MS.gene88871:intron 30.0%
! AACTCTAGGGAAAATTTCAA+AGG - chr1.1:70281798-70281817 None:intergenic 30.0%
! AGCACTGAATATTAGTTTGA+AGG + chr1.1:70281172-70281191 MS.gene88871:CDS 30.0%
! AGCATTTCGTTTGATTTCAT+CGG - chr1.1:70282018-70282037 None:intergenic 30.0%
! AGTTGATACATCTAATGGAA+GGG - chr1.1:70282536-70282555 None:intergenic 30.0%
! CGAATTAAGTTTTCCCATTT+CGG - chr1.1:70280942-70280961 None:intergenic 30.0%
! TCATGATCCAAGATACTTTT+GGG - chr1.1:70282098-70282117 None:intergenic 30.0%
! TTAACCGGTTTAAAAGAAGT+TGG - chr1.1:70281506-70281525 None:intergenic 30.0%
!! AAGTTGATACATCTAATGGA+AGG - chr1.1:70282537-70282556 None:intergenic 30.0%
!! GTGTTTTTATATACACTTGG+TGG + chr1.1:70280802-70280821 MS.gene88871:intron 30.0%
!!! TGCATGGCTTATTTTTATAC+TGG + chr1.1:70279281-70279300 MS.gene88871:intron 30.0%
!!! TTAGAGAAAGGTGTTTTTGA+TGG + chr1.1:70282958-70282977 MS.gene88871:CDS 30.0%
AACATGAAGGTTTCAACTGT+TGG + chr1.1:70281728-70281747 MS.gene88871:CDS 35.0%
AATGATGTATCACCATCCAA+CGG - chr1.1:70280046-70280065 None:intergenic 35.0%
ATGTTCGTGAAATACATCAG+AGG + chr1.1:70282039-70282058 MS.gene88871:CDS 35.0%
CATCATCATCATCATCATCA+GGG - chr1.1:70279581-70279600 None:intergenic 35.0%
CGTATTCTATCACATGGAAA+TGG + chr1.1:70283325-70283344 MS.gene88871:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1.1:70279312-70279331 MS.gene88871:intron 35.0%
GAAGAAGTCATGACAAGTTT+CGG + chr1.1:70283493-70283512 MS.gene88871:CDS 35.0%
GACCAAAAACTACAAACTCT+AGG - chr1.1:70281812-70281831 None:intergenic 35.0%
GGTTTAAACTTTGATGGAGA+TGG - chr1.1:70281023-70281042 None:intergenic 35.0%
TATCATATGGCAAGCTGATA+CGG - chr1.1:70282449-70282468 None:intergenic 35.0%
TCATCATCATCATCATCATC+AGG - chr1.1:70279582-70279601 None:intergenic 35.0%
TCATTGTCTGAATCAGTTTC+AGG - chr1.1:70279618-70279637 None:intergenic 35.0%
TCGATGAATTTACTGAGTGA+CGG - chr1.1:70282671-70282690 None:intergenic 35.0%
TGCTGAAATTCTGTATTCAC+TGG + chr1.1:70282342-70282361 MS.gene88871:intron 35.0%
TGGGACTGAAAAAGATTCAT+CGG + chr1.1:70281352-70281371 MS.gene88871:CDS 35.0%
TGTGTGATGAATGATGATTC+TGG + chr1.1:70279823-70279842 MS.gene88871:intron 35.0%
TTAAACTTTGATGGAGATGG+AGG - chr1.1:70281020-70281039 None:intergenic 35.0%
TTCAGTGCTTCATCTATGAT+TGG - chr1.1:70281161-70281180 None:intergenic 35.0%
TTGTGAGTATTTGGAAACTG+AGG + chr1.1:70279423-70279442 MS.gene88871:intron 35.0%
TTTAGTGTGAAACTTACCCA+AGG - chr1.1:70280516-70280535 None:intergenic 35.0%
! AAGCTATCTAGAATGGTTAG+TGG + chr1.1:70281410-70281429 MS.gene88871:CDS 35.0%
! AGCTATCTAGAATGGTTAGT+GGG + chr1.1:70281411-70281430 MS.gene88871:CDS 35.0%
! AGTTGGTGTTTGTGAGTATT+TGG + chr1.1:70279414-70279433 MS.gene88871:intron 35.0%
! ATCTTGAAGCTTTGATGAAG+AGG + chr1.1:70281609-70281628 MS.gene88871:CDS 35.0%
! CTCATGATCCAAGATACTTT+TGG - chr1.1:70282099-70282118 None:intergenic 35.0%
! GAAACTGATTCAGACAATGA+AGG + chr1.1:70279618-70279637 MS.gene88871:CDS 35.0%
! GAGACCAACTTCTTTTAAAC+CGG + chr1.1:70281499-70281518 MS.gene88871:CDS 35.0%
! GAGCTGAAGTGTATATTTTC+TGG + chr1.1:70279463-70279482 MS.gene88871:intron 35.0%
! GGGAATCCACAAATTTTGAA+TGG - chr1.1:70280103-70280122 None:intergenic 35.0%
! TAATGGAAGGGTATATTACC+TGG - chr1.1:70282524-70282543 None:intergenic 35.0%
! TATGGGCTATATTGGTAACA+AGG + chr1.1:70281760-70281779 MS.gene88871:CDS 35.0%
! TCCCTAGAGTTTGTAGTTTT+TGG + chr1.1:70281807-70281826 MS.gene88871:intron 35.0%
! TGATGATGATGATGATGATG+AGG + chr1.1:70279581-70279600 MS.gene88871:CDS 35.0%
! TGGTATTTTCATCACGGTAT+GGG + chr1.1:70281676-70281695 MS.gene88871:CDS 35.0%
! TTCATTTTCGATCTCTGCAT+CGG - chr1.1:70283476-70283495 None:intergenic 35.0%
! TTGGTATTTTCATCACGGTA+TGG + chr1.1:70281675-70281694 MS.gene88871:CDS 35.0%
! TTTGTTGCCTCAGAAAGTAT+TGG + chr1.1:70281475-70281494 MS.gene88871:CDS 35.0%
!! ATGATGATTCTGGTTCAGTT+TGG + chr1.1:70279833-70279852 MS.gene88871:intron 35.0%
!! GATGGTTGGTATTTTCATCA+CGG + chr1.1:70281670-70281689 MS.gene88871:CDS 35.0%
!! TTCTGAGGCAACAAATGTAA+TGG - chr1.1:70281470-70281489 None:intergenic 35.0%
!!! AGAAAGGTGTTTTTGATGGA+TGG + chr1.1:70282962-70282981 MS.gene88871:CDS 35.0%
!!! GAAGTGTATATTTTCTGGCT+TGG + chr1.1:70279468-70279487 MS.gene88871:intron 35.0%
AAAATTGGTTGAGAGAGACC+AGG + chr1.1:70282503-70282522 MS.gene88871:CDS 40.0%
AACAAATGTAATGGTGGCTC+TGG - chr1.1:70281461-70281480 None:intergenic 40.0%
AACAAGAAGGAACTGAGGTT+AGG + chr1.1:70280302-70280321 MS.gene88871:intron 40.0%
AAGCGATAGTGATATTGGTG+AGG + chr1.1:70281085-70281104 MS.gene88871:CDS 40.0%
AAGGTTTCAACTGTTGGTGT+TGG + chr1.1:70281734-70281753 MS.gene88871:CDS 40.0%
ACTAGTATAATGCCGTTGGA+TGG + chr1.1:70280031-70280050 MS.gene88871:intron 40.0%
AGAATACGATCGCACCTATA+AGG - chr1.1:70283313-70283332 None:intergenic 40.0%
ATAGTCGTCTGCTAATGACA+CGG - chr1.1:70279704-70279723 None:intergenic 40.0%
ATATCTGGTGCATCATCTGA+TGG - chr1.1:70281044-70281063 None:intergenic 40.0%
ATCATCATCATCATCAGGGT+CGG - chr1.1:70279577-70279596 None:intergenic 40.0%
ATCATTCATCACACACGACA+TGG - chr1.1:70279818-70279837 None:intergenic 40.0%
CAAACTAAAGCATACCATGC+TGG - chr1.1:70283081-70283100 None:intergenic 40.0%
CAAGACTAGTATAATGCCGT+TGG + chr1.1:70280027-70280046 MS.gene88871:intron 40.0%
CAGCAGAATTCAGATATGAG+AGG - chr1.1:70280378-70280397 None:intergenic 40.0%
CTGCTGATATCTATGTCCTT+GGG + chr1.1:70280497-70280516 MS.gene88871:CDS 40.0%
CTTTATATGCACCCACCTTA+CGG + chr1.1:70281977-70281996 MS.gene88871:CDS 40.0%
CTTTCTTTGTTCAGCTTGCA+TGG + chr1.1:70279265-70279284 MS.gene88871:intron 40.0%
GCTCTCAAAAGTCGAATATG+AGG - chr1.1:70280149-70280168 None:intergenic 40.0%
GTTAGTGGGACTGAAAGAAT+TGG + chr1.1:70281425-70281444 MS.gene88871:CDS 40.0%
TGAGGCAACAAATGTAATGG+TGG - chr1.1:70281467-70281486 None:intergenic 40.0%
TGCGATCGTATTCTATCACA+TGG + chr1.1:70283319-70283338 MS.gene88871:CDS 40.0%
TTAGAGTATGTGTTGGGACA+TGG + chr1.1:70280410-70280429 MS.gene88871:intron 40.0%
TTCAGACAAGTACATTGGAG+AGG + chr1.1:70283032-70283051 MS.gene88871:CDS 40.0%
TTTGTAAGGATGAGTTAGGC+CGG - chr1.1:70279310-70279329 None:intergenic 40.0%
! AAGTTTTCCCATTTCGGTAC+AGG - chr1.1:70280936-70280955 None:intergenic 40.0%
! ATCTCGTACTTATAGGTTGG+TGG - chr1.1:70283009-70283028 None:intergenic 40.0%
! GGCAAAAGTCATTGACTGTA+AGG + chr1.1:70280267-70280286 MS.gene88871:CDS 40.0%
! TGTTCTGAATATGTTTCCGC+AGG - chr1.1:70281712-70281731 None:intergenic 40.0%
!! AACTGTTGGTGTTGGTGTTA+TGG + chr1.1:70281742-70281761 MS.gene88871:CDS 40.0%
!! ACTGTTGGTGTTGGTGTTAT+GGG + chr1.1:70281743-70281762 MS.gene88871:CDS 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1.1:70279314-70279333 None:intergenic 40.0%
!! CTGAAAGAATTGGTTTGAGC+TGG + chr1.1:70281435-70281454 MS.gene88871:CDS 40.0%
!! CTGCAAATTCTGTTTCTGCT+TGG + chr1.1:70282318-70282337 MS.gene88871:intron 40.0%
!! GTTGGTGTTATGGGCTATAT+TGG + chr1.1:70281752-70281771 MS.gene88871:CDS 40.0%
!! GTTTTTGATGGATGGTCAGA+AGG + chr1.1:70282970-70282989 MS.gene88871:CDS 40.0%
!! TCTCGTACTTATAGGTTGGT+GGG - chr1.1:70283008-70283027 None:intergenic 40.0%
!! TCTTACAAGCCGGTTTTGTA+AGG - chr1.1:70279324-70279343 None:intergenic 40.0%
!! TGGACTTCCCAAAAGTATCT+TGG + chr1.1:70282088-70282107 MS.gene88871:CDS 40.0%
!! TTACAAAACCGGCTTGTAAG+AGG + chr1.1:70279323-70279342 MS.gene88871:intron 40.0%
AATTTCTCCCAGGCTTAAGG+AGG + chr1.1:70280246-70280265 MS.gene88871:CDS 45.0%
ACACTCATCCTCTTACAAGC+CGG - chr1.1:70279334-70279353 None:intergenic 45.0%
ATACTCGTCCTGTACCGAAA+TGG + chr1.1:70280925-70280944 MS.gene88871:CDS 45.0%
ATAGTGAGCAAGCAGATGGT+TGG + chr1.1:70281656-70281675 MS.gene88871:CDS 45.0%
ATGAATTGTGCTCCAGAGGA+AGG - chr1.1:70282587-70282606 None:intergenic 45.0%
CAACAATGGTCATGCGCAAA+TGG + chr1.1:70279514-70279533 MS.gene88871:CDS 45.0%
CACATATATGGCAGAGGTTG+AGG + chr1.1:70283411-70283430 MS.gene88871:CDS 45.0%
CAGAATTTCTCCCAGGCTTA+AGG + chr1.1:70280243-70280262 MS.gene88871:intron 45.0%
CCAAGGACATAGATATCAGC+AGG - chr1.1:70280499-70280518 None:intergenic 45.0%
CCTGCTGATATCTATGTCCT+TGG + chr1.1:70280496-70280515 MS.gene88871:CDS 45.0%
CTCAACCTCTGCCATATATG+TGG - chr1.1:70283413-70283432 None:intergenic 45.0%
GAAGATAGTGAGCAAGCAGA+TGG + chr1.1:70281652-70281671 MS.gene88871:CDS 45.0%
GGACATAGATATCAGCAGGA+TGG - chr1.1:70280495-70280514 None:intergenic 45.0%
GGTCTCTCCAATACTTTCTG+AGG - chr1.1:70281485-70281504 None:intergenic 45.0%
GGTGAGGAGATTCATCCTTT+AGG + chr1.1:70281101-70281120 MS.gene88871:CDS 45.0%
TACTCGTCCTGTACCGAAAT+GGG + chr1.1:70280926-70280945 MS.gene88871:CDS 45.0%
TAGGCTAAATCATTTCCGCG+AGG + chr1.1:70281262-70281281 MS.gene88871:CDS 45.0%
TAGTCACCATCTGATTCAGC+CGG - chr1.1:70279951-70279970 None:intergenic 45.0%
TCACATGAATTGTGCTCCAG+AGG - chr1.1:70282591-70282610 None:intergenic 45.0%
TCATGACAAGTTTCGGCACT+TGG + chr1.1:70283500-70283519 MS.gene88871:CDS 45.0%
TGAACTGCAGAATTTCTCCC+AGG + chr1.1:70280236-70280255 MS.gene88871:intron 45.0%
TGCCATATATGTGGCAGTCA+CGG - chr1.1:70283404-70283423 None:intergenic 45.0%
TGGAGATGGAGGATCACTAA+AGG - chr1.1:70281009-70281028 None:intergenic 45.0%
TGTGTTGGGACATGGAATGT+TGG + chr1.1:70280418-70280437 MS.gene88871:CDS 45.0%
TTGGGTGTATTGTGCAGAGT+GGG + chr1.1:70279884-70279903 MS.gene88871:intron 45.0%
TTTCCGATGAATCTTCCTCG+CGG - chr1.1:70281280-70281299 None:intergenic 45.0%
TTTCCGCGAGGAAGATTCAT+CGG + chr1.1:70281274-70281293 MS.gene88871:CDS 45.0%
TTTGGGTGTATTGTGCAGAG+TGG + chr1.1:70279883-70279902 MS.gene88871:intron 45.0%
! ACTTTTGCCTCCTTAAGCCT+GGG - chr1.1:70280256-70280275 None:intergenic 45.0%
! GAGTACCTGTTGTTGCTTGT+TGG - chr1.1:70279246-70279265 None:intergenic 45.0%
!! GGGACTTGATTTGTGCAAGT+TGG + chr1.1:70279397-70279416 MS.gene88871:intron 45.0%
!! TCCAGAGGAAGGTGTTAATG+CGG - chr1.1:70282576-70282595 None:intergenic 45.0%
!!! TATTTTATTTATATTTTTCA+GGG + chr1.1:70281912-70281931 MS.gene88871:intron 5.0%
!!! TTATTTTATTTATATTTTTC+AGG + chr1.1:70281911-70281930 MS.gene88871:intron 5.0%
ACCCGTGACTGCCACATATA+TGG + chr1.1:70283399-70283418 MS.gene88871:CDS 50.0%
ACCGCATTAACACCTTCCTC+TGG + chr1.1:70282572-70282591 MS.gene88871:intron 50.0%
AGTGCTCGCTGTAGCTTCTT+TGG - chr1.1:70283445-70283464 None:intergenic 50.0%
CACAGCCAACAAGCAACAAC+AGG + chr1.1:70279238-70279257 MS.gene88871:CDS 50.0%
GACTGCCACATATATGGCAG+AGG + chr1.1:70283405-70283424 MS.gene88871:CDS 50.0%
GCCATATATGTGGCAGTCAC+GGG - chr1.1:70283403-70283422 None:intergenic 50.0%
GTACATTGGAGAGGACCCAA+AGG + chr1.1:70283041-70283060 MS.gene88871:CDS 50.0%
GTTGGGACATGGAATGTTGG+AGG + chr1.1:70280421-70280440 MS.gene88871:CDS 50.0%
TCATCACGGTATGGGTTCGA+AGG + chr1.1:70281684-70281703 MS.gene88871:CDS 50.0%
TGGGTGTATTGTGCAGAGTG+GGG + chr1.1:70279885-70279904 MS.gene88871:intron 50.0%
! CTTCCTTTTCACCTGCCGTA+AGG - chr1.1:70281995-70282014 None:intergenic 50.0%
! CTTTTCACCTGCCGTAAGGT+GGG - chr1.1:70281991-70282010 None:intergenic 50.0%
! GACTTTTGCCTCCTTAAGCC+TGG - chr1.1:70280257-70280276 None:intergenic 50.0%
ATATGCACCCACCTTACGGC+AGG + chr1.1:70281981-70282000 MS.gene88871:CDS 55.0%
ATGTGGCAGTCACGGGTCTA+TGG - chr1.1:70283396-70283415 None:intergenic 55.0%
ATTGTGCAGAGTGGGGAAGC+CGG + chr1.1:70279892-70279911 MS.gene88871:intron 55.0%
CAGGAGAGAGGATGAAGCTC+CGG + chr1.1:70279929-70279948 MS.gene88871:CDS 55.0%
CCACCTTACGGCAGGTGAAA+AGG + chr1.1:70281989-70282008 MS.gene88871:CDS 55.0%
GAAGCTCCGGCTGAATCAGA+TGG + chr1.1:70279942-70279961 MS.gene88871:CDS 55.0%
GTGTACGCCTCGCAACCTTT+GGG - chr1.1:70283059-70283078 None:intergenic 55.0%
TATGGGTTCGAAGGAGCCTG+CGG + chr1.1:70281693-70281712 MS.gene88871:CDS 55.0%
TCCTGTCCCTAATCCGTGAC+CGG - chr1.1:70279914-70279933 None:intergenic 55.0%
! CCTTTTCACCTGCCGTAAGG+TGG - chr1.1:70281992-70282011 None:intergenic 55.0%
!! ACGGATTAGGGACAGGAGAG+AGG + chr1.1:70279917-70279936 MS.gene88871:CDS 55.0%
GAGAGGACCCAAAGGTTGCG+AGG + chr1.1:70283049-70283068 MS.gene88871:CDS 60.0%
GGTGTACGCCTCGCAACCTT+TGG - chr1.1:70283060-70283079 None:intergenic 60.0%
TTGCGAGGCGTACACCAGCA+TGG + chr1.1:70283064-70283083 MS.gene88871:CDS 60.0%
! GGGAAGCCGGTCACGGATTA+GGG + chr1.1:70279905-70279924 MS.gene88871:CDS 60.0%
CAGAGTGGGGAAGCCGGTCA+CGG + chr1.1:70279898-70279917 MS.gene88871:intron 65.0%
GGGGAAGCCGGTCACGGATT+AGG + chr1.1:70279904-70279923 MS.gene88871:CDS 65.0%
!! GCCGGTCACGGATTAGGGAC+AGG + chr1.1:70279910-70279929 MS.gene88871:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 70279218 70283537 70279218 ID=MS.gene88871
chr1.1 mRNA 70279218 70283537 70279218 ID=MS.gene88871.t1;Parent=MS.gene88871
chr1.1 exon 70279218 70279259 70279218 ID=MS.gene88871.t1.exon1;Parent=MS.gene88871.t1
chr1.1 CDS 70279218 70279259 70279218 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70279504 70279639 70279504 ID=MS.gene88871.t1.exon2;Parent=MS.gene88871.t1
chr1.1 CDS 70279504 70279639 70279504 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70279901 70279963 70279901 ID=MS.gene88871.t1.exon3;Parent=MS.gene88871.t1
chr1.1 CDS 70279901 70279963 70279901 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70280246 70280318 70280246 ID=MS.gene88871.t1.exon4;Parent=MS.gene88871.t1
chr1.1 CDS 70280246 70280318 70280246 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70280414 70280518 70280414 ID=MS.gene88871.t1.exon5;Parent=MS.gene88871.t1
chr1.1 CDS 70280414 70280518 70280414 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70280875 70281781 70280875 ID=MS.gene88871.t1.exon6;Parent=MS.gene88871.t1
chr1.1 CDS 70280875 70281781 70280875 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70281933 70282117 70281933 ID=MS.gene88871.t1.exon7;Parent=MS.gene88871.t1
chr1.1 CDS 70281933 70282117 70281933 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70282416 70282524 70282416 ID=MS.gene88871.t1.exon8;Parent=MS.gene88871.t1
chr1.1 CDS 70282416 70282524 70282416 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70282946 70283085 70282946 ID=MS.gene88871.t1.exon9;Parent=MS.gene88871.t1
chr1.1 CDS 70282946 70283085 70282946 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
chr1.1 exon 70283318 70283537 70283318 ID=MS.gene88871.t1.exon10;Parent=MS.gene88871.t1
chr1.1 CDS 70283318 70283537 70283318 ID=cds.MS.gene88871.t1;Parent=MS.gene88871.t1
Gene Sequence

>MS.gene88871

ATGAAGCAGCAGCAGAAGCACACAGCCAACAAGCAACAACAGGTACTCTTTCTTTGTTCAGCTTGCATGGCTTATTTTTATACTGGATACCGGCCTAACTCATCCTTACAAAACCGGCTTGTAAGAGGATGAGTGTATTTCTTTATAAATTCTAGTCGGACCTTATCTATAATCTATGTGGGACTTGATTTGTGCAAGTTGGTGTTTGTGAGTATTTGGAAACTGAGGCAAATTGCAGTGAAATTGAGCTGAAGTGTATATTTTCTGGCTTGGTCTTTGTTTATAGAATTTATGGGCAACAATGGTCATGCGCAAATGGCTTAACATTAAAAGGAAGGAGTCTGATGATTACAGCACCGACCCTGATGATGATGATGATGATGATGATGAGGATGATCCTGAAACTGATTCAGACAATGAAGGTTAGTCTATTTAGTGATGTTTCTATTGTAATTAATAAAACATTGGTGTGAAATTTTGTCACCGTGTCATTAGCAGACGACTATTCATTTGAAGATTTGGAAATTGAGGATTATGGTTTGTTTCTAACTAATGATCTGAAAATTCAGATTTGTGATTGATTTGAGATCTTAGAAACCATGTCGTGTGTGATGAATGATGATTCTGGTTCAGTTTGGTTTTTTCTGTGATCTGTCTCAATTTTATTTGGGTGTATTGTGCAGAGTGGGGAAGCCGGTCACGGATTAGGGACAGGAGAGAGGATGAAGCTCCGGCTGAATCAGATGGTGACTATTTTCTTTCATATATGAAATGATAACAGACAAGTTTTACTGATTTTGTCTTAATTTCAAGACTAGTATAATGCCGTTGGATGGTGATACATCATTATAGTTTTGAAACTAGCACTCGTTAGTTTTGACACCATTCAAAATTTGTGGATTCCCTAAATTTAAATCGAAAAATGGAACCTCATATTCGACTTTTGAGAGCTAAAATACATATCAAAATCAAATAAGTATTTGCAGCAATAAAAGCATGAACTCTGAATAATTTCAAATGAACTGCAGAATTTCTCCCAGGCTTAAGGAGGCAAAAGTCATTGACTGTAAGGTCTCAATATATAAACAAGAAGGAACTGAGGTTAGGAACTGCTCTTGTCTTAGAAAGCATAGTTTGTTTTTGTTATTTCTCACATGCCTCTCATATCTGAATTCTGCTGTATACTTTTCTATTAGAGTATGTGTTGGGACATGGAATGTTGGAGGAAAACTTCCACCTAATGACTTTGATATTGATGATTGGCTAGACATTAACCATCCTGCTGATATCTATGTCCTTGGGTAAGTTTCACACTAAATTTTCTCACTATTGCATATACACTCAAATATAAGGCCATTTTGAAATCACTTTTAATACATTTTCTTGCATAATCACTTTTTTTTTTTTATGGATTTGATTCACATGCACGTTCAGTGTAAAGATTCTTTACACTGTCGATCAATTGTCATTGTCTGAACATGAAAAATGTTTGACTTTAATCATAATTTGCTTCTAAAGTCACACGTATGATTGTTTCTGATTTATTGATAGTATAAAATTTTCTGCACTGACTGTGTATCAAAAGTGTTTTTATATACACTTGGTGGTTTGTCTGATTTGTTTGACTAAAAAGTTTCTTTGCACTTTGCAATTGCAGTCTTCAAGAGATTGTACCTTTAAACACGAGTAACATTTTTGTTGCTGTAGATACTCGTCCTGTACCGAAATGGGAAAACTTAATTCGAGAAGCTCTGAATAGAGTTCGATCAAAACCTTCAAAGATAAAATCCTTTAGTGATCCTCCATCTCCATCAAAGTTTAAACCATCAGATGATGCACCAGATATAGAAGAAGAAATTCTATTAGAAAGCGATAGTGATATTGGTGAGGAGATTCATCCTTTAGGTGAAGAACATAATTTATTTGGAGTCACAGATAAACCAATCATAGATGAAGCACTGAATATTAGTTTGAAGGATTCAAATGCTTCTGATATAGCTGAGAACGATCTACAGAATCAGTTATCTTATCAAAGAAGGTTGAATAGGCTAAATCATTTCCGCGAGGAAGATTCATCGGAAAACAATGAAACAACTTCTTCTCAACAGATTAGTAAGCTATCTAGAATGATTAATGGGACTGAAAAAGATTCATCGGAAAACAATGAAACGACTTCTTCTCAACAGATTAGTAAGCTATCTAGAATGGTTAGTGGGACTGAAAGAATTGGTTTGAGCTGGCCAGAGCCACCATTACATTTGTTGCCTCAGAAAGTATTGGAGAGACCAACTTCTTTTAAACCGGTTAAATCGTTTAATAAGACAAAGTCATTTAGAGCCTGTGATTCTTTCAAATCAAAAACAGATGCTATAGATTTACTGGCTGATATTGATCTTGAAGCTTTGATGAAGAGGAAAACAAGATCGTCGTATGTGAAGATAGTGAGCAAGCAGATGGTTGGTATTTTCATCACGGTATGGGTTCGAAGGAGCCTGCGGAAACATATTCAGAACATGAAGGTTTCAACTGTTGGTGTTGGTGTTATGGGCTATATTGGTAACAAGGTCTCTTTCACTTCCTTTGAAATTTTCCCTAGAGTTTGTAGTTTTTGGTCATTACATTGTCATTAACATATTCATATGAGAAATTGAGAATGATAACATATATGAGAAATGTTATCAATGATGAGAAACTTATTTTATTTATATTTTTCAGGGATCAATATCTGTCAGCATGTCTATTTATCAGACGCTTTTTTGCTTTATATGCACCCACCTTACGGCAGGTGAAAAGGAAGCCGATGAAATCAAACGAAATGCTGATGTTCGTGAAATACATCAGAGGACCCATTTTTATTCACTTTCTGATTTTGGACTTCCCAAAAGTATCTTGGATCATGAGTGAGTTCATGTTTTACATACCACATTCAAATATGTTAATTTAATTTTACTCCTTGAATTATATGCTAATGCCTTTTGATTAAAATTAAGGTAATATATAAAAACAATGTCTTGAATTTACATGGCTAGAATTTAACTTGAACATTTTTTTTTATCCTTCTATATGATTAAATTAGAACCTTCTATTGAAGTAAATTAATCTGCAAATTCTGTTTCTGCTTGGCTGCTGAAATTCTGTATTCACTGGTTCTGTTTGAAAAAATTATAATCATTTAATCAAATTCTAATTTATTTGCAGAAGAATAATTTGGTTCGGTGATCTGAATTACCGTATCAGCTTGCCATATGATAAAACAAGAGATCTTATCTCAAAAAAGCATTGGTCAAAATTGGTTGAGAGAGACCAGGTAATATACCCTTCCATTAGATGTATCAACTTGATACTATCAAGTGTACCGCATTAACACCTTCCTCTGGAGCACAATTCATGTGATTATTGATGTCTTATTTCTGAGGAGTAATAAGCAAAATCCATTAAGAAATATATGTTCCGTCACTCAGTAAATTCATCGACATCATTTCATCGTAAACTTGCAATTCATTAATTGAAATACTACAAGTTAAGAGCATCACTTGAATAACAACTTATGTAGAAACTACTCGAGTAAATAAAACTTTATGTTGATATTTATATCCATTTTGTAACATAGATAATCGTGTTTAAGGGTTTAGGGTTTCATGATATTTATATCCTTATTCATTTTGATTTCATGATATAGATTTTGAACTCAAGTTAAAAGGGTATATATTGACATCTTACTATGACAGCTTGTGAAAGAATTAGAGAAAGGTGTTTTTGATGGATGGTCAGAAGGTGCGTTAAACTTCCCACCAACCTATAAGTACGAGATTAATTCAGACAAGTACATTGGAGAGGACCCAAAGGTTGCGAGGCGTACACCAGCATGGTATGCTTTAGTTTGCTTCAACAGAGATTCTGCTTCAATTTGTGTTTTATATGCATTTATTCATGTATTAATTTACCATTTTTTTATCATACTCATAAACCAAACTGTTCTTAGTAAAATGAACTATTAATAATATTAATACTGCTGTGTGTGTTCGTGTATATGTGTGATTATACTATACATGATTATTTATAAATGAATTTTCTTTTTAATGTTTGCAATTACCTTATAGGTGCGATCGTATTCTATCACATGGAAATGGAATGAGATTACTGAGTTACAAAAGGAGTGAACTTAAATTTTCAGACCATAGACCCGTGACTGCCACATATATGGCAGAGGTTGAGGTGTTCAATCCAAAGAAGCTACAGCGAGCACTTAATTACACCGATGCAGAGATCGAAAATGAAGAAGTCATGACAAGTTTCGGCACTTGGAATTTAGCAACATAA
Protein sequence

>MS.gene88871.t1

MKQQQKHTANKQQQNLWATMVMRKWLNIKRKESDDYSTDPDDDDDDDDEDDPETDSDNEEWGSRSRIRDRREDEAPAESDEFLPGLRRQKSLTVRSQYINKKELRVCVGTWNVGGKLPPNDFDIDDWLDINHPADIYVLGLQEIVPLNTSNIFVAVDTRPVPKWENLIREALNRVRSKPSKIKSFSDPPSPSKFKPSDDAPDIEEEILLESDSDIGEEIHPLGEEHNLFGVTDKPIIDEALNISLKDSNASDIAENDLQNQLSYQRRLNRLNHFREEDSSENNETTSSQQISKLSRMINGTEKDSSENNETTSSQQISKLSRMVSGTERIGLSWPEPPLHLLPQKVLERPTSFKPVKSFNKTKSFRACDSFKSKTDAIDLLADIDLEALMKRKTRSSYVKIVSKQMVGIFITVWVRRSLRKHIQNMKVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTAGEKEADEIKRNADVREIHQRTHFYSLSDFGLPKSILDHERIIWFGDLNYRISLPYDKTRDLISKKHWSKLVERDQLVKELEKGVFDGWSEGALNFPPTYKYEINSDKYIGEDPKVARRTPAWCDRILSHGNGMRLLSYKRSELKFSDHRPVTATYMAEVEVFNPKKLQRALNYTDAEIENEEVMTSFGTWNLAT