Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88902.t1 | XP_003592069.1 | 99.1 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 1.50E-240 | 841.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88902.t1 | Q9SB58 | 66.7 | 423 | 117 | 8 | 4 | 421 | 3 | 406 | 1.8e-157 | 557.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88902.t1 | G7IBW6 | 99.1 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 1.1e-240 | 841.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33918 | MS.gene88902 | PPI |
| MS.gene60766 | MS.gene88902 | PPI |
| MS.gene006074 | MS.gene88902 | PPI |
| MS.gene88902 | MS.gene88846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88902.t1 | MTR_1g098390 | 99.052 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 0.0 | 869 |
| MS.gene88902.t1 | MTR_6g038020 | 80.440 | 409 | 74 | 4 | 15 | 419 | 16 | 422 | 0.0 | 667 |
| MS.gene88902.t1 | MTR_6g038020 | 80.244 | 410 | 75 | 4 | 14 | 419 | 12 | 419 | 0.0 | 667 |
| MS.gene88902.t1 | MTR_6g033315 | 54.478 | 402 | 172 | 7 | 6 | 404 | 21 | 414 | 1.63e-149 | 431 |
| MS.gene88902.t1 | MTR_7g083480 | 55.774 | 407 | 157 | 8 | 5 | 404 | 20 | 410 | 2.09e-141 | 410 |
| MS.gene88902.t1 | MTR_3g098840 | 48.387 | 403 | 178 | 6 | 5 | 403 | 21 | 397 | 5.47e-129 | 379 |
| MS.gene88902.t1 | MTR_7g088350 | 50.440 | 341 | 150 | 5 | 1 | 334 | 21 | 349 | 4.61e-116 | 347 |
| MS.gene88902.t1 | MTR_7g088360 | 53.443 | 305 | 131 | 4 | 1 | 301 | 25 | 322 | 7.11e-112 | 335 |
| MS.gene88902.t1 | MTR_4g023760 | 27.703 | 296 | 182 | 11 | 30 | 317 | 24 | 295 | 1.97e-25 | 105 |
| MS.gene88902.t1 | MTR_4g021795 | 31.000 | 200 | 110 | 7 | 67 | 261 | 52 | 228 | 1.62e-20 | 91.7 |
| MS.gene88902.t1 | MTR_7g114080 | 35.507 | 138 | 79 | 2 | 136 | 263 | 160 | 297 | 5.59e-19 | 88.6 |
| MS.gene88902.t1 | MTR_7g114080 | 33.333 | 147 | 79 | 2 | 136 | 263 | 160 | 306 | 9.54e-18 | 84.7 |
| MS.gene88902.t1 | MTR_4g116160 | 29.936 | 157 | 92 | 4 | 31 | 185 | 285 | 425 | 1.41e-17 | 85.5 |
| MS.gene88902.t1 | MTR_1g094610 | 32.778 | 180 | 82 | 5 | 88 | 261 | 69 | 215 | 1.45e-17 | 82.8 |
| MS.gene88902.t1 | MTR_5g023230 | 34.225 | 187 | 100 | 6 | 133 | 309 | 145 | 318 | 1.64e-17 | 83.6 |
| MS.gene88902.t1 | MTR_4g116160 | 29.936 | 157 | 92 | 4 | 31 | 185 | 112 | 252 | 1.81e-17 | 84.7 |
| MS.gene88902.t1 | MTR_5g023230 | 34.225 | 187 | 100 | 6 | 133 | 309 | 165 | 338 | 2.06e-17 | 83.6 |
| MS.gene88902.t1 | MTR_4g116160 | 29.936 | 157 | 92 | 4 | 31 | 185 | 285 | 425 | 3.16e-17 | 84.0 |
| MS.gene88902.t1 | MTR_4g092760 | 34.426 | 122 | 69 | 2 | 69 | 190 | 307 | 417 | 1.77e-16 | 81.6 |
| MS.gene88902.t1 | MTR_7g114080 | 33.562 | 146 | 70 | 3 | 136 | 258 | 160 | 301 | 5.39e-16 | 79.0 |
| MS.gene88902.t1 | MTR_1g112830 | 30.455 | 220 | 113 | 8 | 70 | 278 | 415 | 605 | 1.13e-15 | 79.7 |
| MS.gene88902.t1 | MTR_7g118050 | 29.661 | 236 | 117 | 11 | 88 | 303 | 83 | 289 | 1.48e-15 | 77.4 |
| MS.gene88902.t1 | MTR_4g092760 | 34.821 | 112 | 62 | 2 | 79 | 190 | 228 | 328 | 1.90e-15 | 78.2 |
| MS.gene88902.t1 | MTR_7g114080 | 54.237 | 59 | 27 | 0 | 136 | 194 | 160 | 218 | 9.22e-15 | 75.1 |
| MS.gene88902.t1 | MTR_7g118050 | 35.294 | 102 | 40 | 2 | 88 | 179 | 83 | 168 | 4.42e-14 | 71.6 |
| MS.gene88902.t1 | MTR_5g023230 | 41.270 | 63 | 37 | 0 | 133 | 195 | 165 | 227 | 1.56e-12 | 67.4 |
| MS.gene88902.t1 | MTR_1g085980 | 30.075 | 133 | 84 | 3 | 135 | 258 | 155 | 287 | 4.90e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88902.t1 | AT4G24630 | 66.509 | 424 | 118 | 8 | 3 | 421 | 2 | 406 | 0.0 | 577 |
| MS.gene88902.t1 | AT5G50020 | 62.353 | 425 | 146 | 5 | 1 | 421 | 30 | 444 | 0.0 | 535 |
| MS.gene88902.t1 | AT5G50020 | 62.648 | 423 | 144 | 5 | 3 | 421 | 2 | 414 | 0.0 | 534 |
| MS.gene88902.t1 | AT5G50020 | 61.229 | 423 | 143 | 6 | 3 | 421 | 2 | 407 | 0.0 | 514 |
| MS.gene88902.t1 | AT3G26935 | 54.300 | 407 | 169 | 8 | 5 | 404 | 19 | 415 | 7.56e-146 | 422 |
| MS.gene88902.t1 | AT5G41060 | 51.485 | 404 | 178 | 7 | 5 | 406 | 19 | 406 | 1.33e-135 | 395 |
| MS.gene88902.t1 | AT3G48760 | 48.905 | 411 | 184 | 7 | 5 | 402 | 28 | 425 | 4.60e-129 | 381 |
| MS.gene88902.t1 | AT5G41060 | 50.636 | 393 | 176 | 7 | 16 | 406 | 15 | 391 | 2.60e-128 | 376 |
| MS.gene88902.t1 | AT3G56930 | 51.775 | 338 | 142 | 6 | 4 | 323 | 9 | 343 | 1.50e-115 | 346 |
| MS.gene88902.t1 | AT5G41060 | 50.291 | 344 | 154 | 6 | 63 | 404 | 9 | 337 | 6.36e-111 | 330 |
| MS.gene88902.t1 | AT5G41060 | 50.291 | 344 | 154 | 6 | 63 | 404 | 9 | 337 | 6.36e-111 | 330 |
| MS.gene88902.t1 | AT5G05070 | 43.782 | 386 | 187 | 7 | 5 | 385 | 37 | 397 | 2.33e-104 | 315 |
| MS.gene88902.t1 | AT2G40990 | 47.305 | 334 | 164 | 5 | 4 | 334 | 27 | 351 | 1.82e-100 | 305 |
| MS.gene88902.t1 | AT3G56920 | 51.163 | 301 | 137 | 4 | 4 | 301 | 9 | 302 | 1.10e-98 | 298 |
| MS.gene88902.t1 | AT3G56930 | 48.525 | 305 | 111 | 4 | 4 | 301 | 9 | 274 | 1.78e-95 | 293 |
| MS.gene88902.t1 | AT3G60800 | 27.881 | 269 | 157 | 9 | 30 | 283 | 24 | 270 | 8.48e-20 | 89.7 |
| MS.gene88902.t1 | AT3G09320 | 31.429 | 175 | 93 | 5 | 87 | 258 | 66 | 216 | 4.66e-19 | 87.4 |
| MS.gene88902.t1 | AT3G04970 | 30.942 | 223 | 105 | 7 | 60 | 263 | 27 | 219 | 6.24e-19 | 87.4 |
| MS.gene88902.t1 | AT3G04970 | 33.987 | 153 | 82 | 2 | 136 | 269 | 160 | 312 | 6.06e-18 | 85.5 |
| MS.gene88902.t1 | AT3G51390 | 35.079 | 191 | 99 | 5 | 130 | 309 | 156 | 332 | 2.62e-17 | 83.2 |
| MS.gene88902.t1 | AT3G51390 | 35.079 | 191 | 99 | 5 | 130 | 309 | 151 | 327 | 2.92e-17 | 82.8 |
| MS.gene88902.t1 | AT4G00840 | 28.464 | 267 | 150 | 9 | 31 | 283 | 16 | 255 | 4.74e-17 | 81.6 |
| MS.gene88902.t1 | AT5G04270 | 29.101 | 189 | 99 | 5 | 73 | 260 | 57 | 211 | 8.52e-17 | 80.5 |
| MS.gene88902.t1 | AT2G14255 | 23.643 | 258 | 172 | 6 | 31 | 278 | 273 | 515 | 9.63e-16 | 79.7 |
| MS.gene88902.t1 | AT3G04970 | 34.507 | 142 | 74 | 2 | 136 | 258 | 160 | 301 | 1.63e-15 | 77.4 |
| MS.gene88902.t1 | AT4G00840 | 30.380 | 158 | 82 | 4 | 31 | 179 | 16 | 154 | 2.51e-15 | 75.1 |
| MS.gene88902.t1 | AT5G20350 | 26.515 | 264 | 144 | 11 | 65 | 305 | 311 | 547 | 3.10e-15 | 78.2 |
| MS.gene88902.t1 | AT4G22750 | 28.992 | 238 | 126 | 12 | 65 | 286 | 53 | 263 | 1.71e-14 | 74.3 |
| MS.gene88902.t1 | AT1G69420 | 32.824 | 131 | 79 | 2 | 137 | 258 | 164 | 294 | 8.18e-14 | 73.9 |
| MS.gene88902.t1 | AT1G69420 | 32.824 | 131 | 79 | 2 | 137 | 258 | 164 | 294 | 8.18e-14 | 73.9 |
| MS.gene88902.t1 | AT4G15080 | 28.244 | 131 | 85 | 3 | 137 | 258 | 175 | 305 | 4.20e-11 | 65.5 |
| MS.gene88902.t1 | AT4G15080 | 28.244 | 131 | 85 | 3 | 137 | 258 | 175 | 305 | 4.20e-11 | 65.5 |
| MS.gene88902.t1 | AT4G01730 | 27.820 | 133 | 87 | 1 | 135 | 258 | 157 | 289 | 9.14e-11 | 63.9 |
Find 102 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCGGGTTCAGCTGTATTA+TGG | 0.185783 | 1.1:-70740163 | None:intergenic |
| AGCCCTCAAGGAACAATTTC+AGG | 0.201284 | 1.1:+70739940 | MS.gene88902:CDS |
| TTGGGAGGGAGGTTGGTATT+TGG | 0.234568 | 1.1:+70738221 | MS.gene88902:CDS |
| TGACCTGGTTTGTGCTTATA+AGG | 0.264898 | 1.1:-70739483 | None:intergenic |
| TCACAATATTTCACCTTTAC+AGG | 0.267079 | 1.1:-70739023 | None:intergenic |
| CTGATGGATAATAATGATAT+TGG | 0.268744 | 1.1:+70739355 | MS.gene88902:CDS |
| CTTCTTCATGTTTGTTTCTT+CGG | 0.274672 | 1.1:+70739279 | MS.gene88902:CDS |
| TGGTTTGTTGGTGGACTAAC+TGG | 0.293277 | 1.1:+70739448 | MS.gene88902:CDS |
| CATTACTTCCTTTCCAAACT+TGG | 0.299890 | 1.1:-70736661 | None:intergenic |
| GGACGTGAACCAGATGATTT+AGG | 0.344379 | 1.1:+70740014 | MS.gene88902:CDS |
| CTTATTGTTTCATCTCTTTG+TGG | 0.349726 | 1.1:+70739428 | MS.gene88902:CDS |
| AATACACAAAAGATGATAAC+TGG | 0.357912 | 1.1:-70738290 | None:intergenic |
| CAAAGCGCGTGTACCAAGTT+TGG | 0.358764 | 1.1:+70736648 | MS.gene88902:CDS |
| TTCATCTCTTTGTGGTTTGT+TGG | 0.359365 | 1.1:+70739436 | MS.gene88902:CDS |
| CGCTGACTACAGTCATTTCC+CGG | 0.363776 | 1.1:+70739991 | MS.gene88902:CDS |
| ATCGGGTTCAGCTGTATTAT+GGG | 0.367393 | 1.1:-70740162 | None:intergenic |
| TGAGACATAGTTTCTGCTTT+CGG | 0.370907 | 1.1:-70740303 | None:intergenic |
| TCATAACGAAACTCTTCTTC+TGG | 0.372940 | 1.1:-70738924 | None:intergenic |
| GCCCTGAAATTGTTCCTTGA+GGG | 0.375186 | 1.1:-70739942 | None:intergenic |
| TTCAACACAGTTGTTGCATA+TGG | 0.381975 | 1.1:-70739087 | None:intergenic |
| GTTGGGAAAGAAGTGGAAAC+TGG | 0.383128 | 1.1:+70740243 | MS.gene88902:CDS |
| GCTTTCGGTGACATTTGAAT+TGG | 0.392459 | 1.1:-70740288 | None:intergenic |
| ATCTGATGACAAAATTGAAT+CGG | 0.397612 | 1.1:-70740180 | None:intergenic |
| ATCTCTTTGTGGTTTGTTGG+TGG | 0.397741 | 1.1:+70739439 | MS.gene88902:CDS |
| TGGTATTTGGACCTGATGCC+AGG | 0.402430 | 1.1:+70738234 | MS.gene88902:CDS |
| GCCATTAAAATCACAGATGC+AGG | 0.405346 | 1.1:-70739406 | None:intergenic |
| AATCATCTGGTTCACGTCCC+CGG | 0.425156 | 1.1:-70740010 | None:intergenic |
| GTTTCGATCACCATTGCCCT+TGG | 0.426437 | 1.1:+70739111 | MS.gene88902:CDS |
| AAGGCTTGGTGTTTGTTGTC+CGG | 0.437240 | 1.1:-70738961 | None:intergenic |
| TGATGGATAATAATGATATT+GGG | 0.439446 | 1.1:+70739356 | MS.gene88902:CDS |
| ATTCATATTGGGAGGGAGGT+TGG | 0.442239 | 1.1:+70738214 | MS.gene88902:CDS |
| TGATGCTAGGCACTCGAGTT+GGG | 0.442268 | 1.1:+70740226 | MS.gene88902:CDS |
| TATTTGTAGCAAGGCATCTT+CGG | 0.448925 | 1.1:+70738309 | MS.gene88902:CDS |
| CGATCACCATTGCCCTTGGG+TGG | 0.452546 | 1.1:+70739115 | MS.gene88902:CDS |
| ACGAGGACATTCAGAATAGA+AGG | 0.454776 | 1.1:+70740126 | MS.gene88902:CDS |
| CGATCTCCACCTAAATCATC+TGG | 0.458038 | 1.1:-70740023 | None:intergenic |
| TTTACTTCTGCACGTGATCC+GGG | 0.459773 | 1.1:+70738876 | MS.gene88902:CDS |
| GTTGAAGATGATCTAGATAT+CGG | 0.459943 | 1.1:+70740056 | MS.gene88902:CDS |
| ATAAGCAGGGACCTGGCATC+AGG | 0.465465 | 1.1:-70738245 | None:intergenic |
| GCCCTCAAGGAACAATTTCA+GGG | 0.468192 | 1.1:+70739941 | MS.gene88902:CDS |
| TCTAGATCATCTTCAACCTT+AGG | 0.476598 | 1.1:-70740050 | None:intergenic |
| TTTCGATCACCATTGCCCTT+GGG | 0.476678 | 1.1:+70739112 | MS.gene88902:CDS |
| ATCATCTGGTTCACGTCCCC+GGG | 0.476849 | 1.1:-70740009 | None:intergenic |
| TCAACAACAGAGTGATAAGC+AGG | 0.501511 | 1.1:-70738259 | None:intergenic |
| GGTCAATGGCCTTCCTGTAA+AGG | 0.502557 | 1.1:+70739010 | MS.gene88902:CDS |
| CCTTGGGTGGGCCAATGCAT+CGG | 0.507687 | 1.1:+70739128 | MS.gene88902:CDS |
| CTGATGCTAGGCACTCGAGT+TGG | 0.513944 | 1.1:+70740225 | MS.gene88902:CDS |
| ATCGTACCAGACCGATGCAT+TGG | 0.515932 | 1.1:-70739139 | None:intergenic |
| AGGTGGAGATCGCCGTCCTA+AGG | 0.518925 | 1.1:+70740034 | MS.gene88902:CDS |
| GGTGGGCCAATGCATCGGTC+TGG | 0.526093 | 1.1:+70739133 | MS.gene88902:CDS |
| TCTGATGACAAAATTGAATC+GGG | 0.527605 | 1.1:-70740179 | None:intergenic |
| ACAAAAGAAGTAATGGTCAA+TGG | 0.531295 | 1.1:+70738996 | MS.gene88902:CDS |
| TCTGGTGGATGTGAATTCCT+CGG | 0.532209 | 1.1:-70738906 | None:intergenic |
| GATCACCATTGCCCTTGGGT+GGG | 0.532792 | 1.1:+70739116 | MS.gene88902:CDS |
| GCTGACTACAGTCATTTCCC+GGG | 0.535809 | 1.1:+70739992 | MS.gene88902:CDS |
| TCCGATACAGAGCTGATGGC+CGG | 0.537522 | 1.1:+70739856 | MS.gene88902:CDS |
| TGATATTGGGACGGTGTGGA+AGG | 0.541635 | 1.1:+70739369 | MS.gene88902:CDS |
| GTTCGTGGGAACTGAAGGCT+TGG | 0.542418 | 1.1:-70738975 | None:intergenic |
| CCCACGAACAAAAGAAGTAA+TGG | 0.547877 | 1.1:+70738989 | MS.gene88902:CDS |
| CCGATGCATTGGCCCACCCA+AGG | 0.548990 | 1.1:-70739128 | None:intergenic |
| CTTGATGTAAAATGCTGAGA+AGG | 0.551418 | 1.1:-70739329 | None:intergenic |
| TGCAGAAATTCATATTGGGA+GGG | 0.554399 | 1.1:+70738207 | MS.gene88902:intron |
| TCCGGCCATCAGCTCTGTAT+CGG | 0.557777 | 1.1:-70739857 | None:intergenic |
| TAACGAAACTCTTCTTCTGG+TGG | 0.560200 | 1.1:-70738921 | None:intergenic |
| TTGCAGAAATTCATATTGGG+AGG | 0.560897 | 1.1:+70738206 | MS.gene88902:intron |
| TATGAATCTTCTACAGTAGC+CGG | 0.561324 | 1.1:+70738942 | MS.gene88902:CDS |
| AACTTCCGATACAGAGCTGA+TGG | 0.564513 | 1.1:+70739852 | MS.gene88902:CDS |
| CAGAAACTATGTCTCATCAA+AGG | 0.566125 | 1.1:+70740310 | MS.gene88902:CDS |
| CGATGCATTGGCCCACCCAA+GGG | 0.571945 | 1.1:-70739127 | None:intergenic |
| CCATTAAAATCACAGATGCA+GGG | 0.572375 | 1.1:-70739405 | None:intergenic |
| ATTGGCCCACCCAAGGGCAA+TGG | 0.573287 | 1.1:-70739121 | None:intergenic |
| CCACAATACGATCTGATGCT+AGG | 0.575400 | 1.1:+70740213 | MS.gene88902:CDS |
| AATATTTCACCTTTACAGGA+AGG | 0.578975 | 1.1:-70739019 | None:intergenic |
| GCACAGAAATAAAGCCCTCA+AGG | 0.581420 | 1.1:+70739928 | MS.gene88902:CDS |
| CAGAGTGATAAGCAGGGACC+TGG | 0.584523 | 1.1:-70738252 | None:intergenic |
| AGCAATGCGAGCAACGAGGA+GGG | 0.589494 | 1.1:-70739064 | None:intergenic |
| GAATTCCTCGGAATGATACC+CGG | 0.590985 | 1.1:-70738894 | None:intergenic |
| AGAAATTCATATTGGGAGGG+AGG | 0.591649 | 1.1:+70738210 | MS.gene88902:intron |
| CGCGTGTACCAAGTTTGGAA+AGG | 0.595301 | 1.1:+70736653 | MS.gene88902:CDS |
| TATTGAAGATATCACAGCGT+AGG | 0.599952 | 1.1:+70740087 | MS.gene88902:CDS |
| AAACAAACATGAAGAAGTAA+CGG | 0.600646 | 1.1:-70739273 | None:intergenic |
| AGCCCTGAAATTGTTCCTTG+AGG | 0.605131 | 1.1:-70739943 | None:intergenic |
| TTGGGAAAGAAGTGGAAACT+GGG | 0.614418 | 1.1:+70740244 | MS.gene88902:CDS |
| CACTCGAGTTGGGAAAGAAG+TGG | 0.619470 | 1.1:+70740236 | MS.gene88902:CDS |
| CCTAGCATCAGATCGTATTG+TGG | 0.626014 | 1.1:-70740213 | None:intergenic |
| AAGTAAAACAGAGAAGCACC+AGG | 0.628755 | 1.1:-70738860 | None:intergenic |
| TCGGGTTCAGCTGTATTATG+GGG | 0.630608 | 1.1:-70740161 | None:intergenic |
| ATTCAGAATAGAAGGAGCAA+TGG | 0.632276 | 1.1:+70740134 | MS.gene88902:CDS |
| CGTGAACCAGATGATTTAGG+TGG | 0.634926 | 1.1:+70740017 | MS.gene88902:CDS |
| GAGCAATGCGAGCAACGAGG+AGG | 0.635551 | 1.1:-70739065 | None:intergenic |
| CATTAAAATCACAGATGCAG+GGG | 0.637602 | 1.1:-70739404 | None:intergenic |
| TTGTTCAAGAGGAGGTACAA+AGG | 0.639298 | 1.1:+70739967 | MS.gene88902:CDS |
| GATCATCTTCAACCTTAGGA+CGG | 0.645908 | 1.1:-70740046 | None:intergenic |
| GTACCTTATAAGCACAAACC+AGG | 0.647591 | 1.1:+70739480 | MS.gene88902:CDS |
| GTGATCCGGGTATCATTCCG+AGG | 0.656598 | 1.1:+70738889 | MS.gene88902:CDS |
| CAACAACAGAGTGATAAGCA+GGG | 0.663934 | 1.1:-70738258 | None:intergenic |
| ATAATGATATTGGGACGGTG+TGG | 0.667624 | 1.1:+70739365 | MS.gene88902:CDS |
| GGATAATAATGATATTGGGA+CGG | 0.677213 | 1.1:+70739360 | MS.gene88902:CDS |
| CGGGAAATGACTGTAGTCAG+CGG | 0.680419 | 1.1:-70739990 | None:intergenic |
| GAATATTGAGCAACTCGACG+AGG | 0.690893 | 1.1:+70740109 | MS.gene88902:CDS |
| CTGACTACAGTCATTTCCCG+GGG | 0.712910 | 1.1:+70739993 | MS.gene88902:CDS |
| ATGGAGCAATGCGAGCAACG+AGG | 0.766529 | 1.1:-70739068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATATTTAGTTAGTGT+TGG | - | chr1.1:70737647-70737666 | None:intergenic | 15.0% |
| !! | ATTTATATTTAGTTAGTGTT+GGG | - | chr1.1:70737646-70737665 | None:intergenic | 15.0% |
| !! | ATTTATTGTATCTCATTTAT+TGG | + | chr1.1:70739541-70739560 | MS.gene88902:intron | 15.0% |
| !! | TTGATATTGATACTATATAT+AGG | + | chr1.1:70737911-70737930 | MS.gene88902:intron | 15.0% |
| !! | TTGTGAGTAAAATATTAAAT+TGG | + | chr1.1:70737674-70737693 | MS.gene88902:intron | 15.0% |
| !! | TTTATTGTATCTCATTTATT+GGG | + | chr1.1:70739542-70739561 | MS.gene88902:intron | 15.0% |
| !!! | CTTTTGTTCTAATTTTTTTT+GGG | + | chr1.1:70739226-70739245 | MS.gene88902:intron | 15.0% |
| !!! | TATTTCTAATTAATACACTT+TGG | - | chr1.1:70739638-70739657 | None:intergenic | 15.0% |
| !!! | TCAGTATATTTGTTATTATT+GGG | + | chr1.1:70737172-70737191 | MS.gene88902:intron | 15.0% |
| !!! | TCTTTATATATTTTTCAGAT+TGG | + | chr1.1:70738030-70738049 | MS.gene88902:intron | 15.0% |
| !! | ACTTATTTAAATTGAGACTA+TGG | - | chr1.1:70738485-70738504 | None:intergenic | 20.0% |
| !! | ATTAAATTGGTTGGATTAAA+TGG | + | chr1.1:70737687-70737706 | MS.gene88902:intron | 20.0% |
| !! | ATTTAGTTAATCATATGTGT+CGG | - | chr1.1:70738616-70738635 | None:intergenic | 20.0% |
| !! | CAATAATAACAAATATACTG+AGG | - | chr1.1:70737173-70737192 | None:intergenic | 20.0% |
| !! | GAGTAAAATATTAAATTGGT+TGG | + | chr1.1:70737678-70737697 | MS.gene88902:intron | 20.0% |
| !! | TAGTAAAATCAAACAGTATT+AGG | - | chr1.1:70738726-70738745 | None:intergenic | 20.0% |
| !! | TCTTCTTTGAATTATTAGTT+AGG | + | chr1.1:70736864-70736883 | MS.gene88902:intron | 20.0% |
| !! | TTATTGTATCTCATTTATTG+GGG | + | chr1.1:70739543-70739562 | MS.gene88902:intron | 20.0% |
| !! | TTTATATTTAGTTAGTGTTG+GGG | - | chr1.1:70737645-70737664 | None:intergenic | 20.0% |
| !!! | AGGTTGTTTAAATAATTTTC+TGG | + | chr1.1:70739896-70739915 | MS.gene88902:CDS | 20.0% |
| !!! | ATACTGTTTGATTTTACTAA+AGG | + | chr1.1:70738727-70738746 | MS.gene88902:intron | 20.0% |
| !!! | CAGTATATTTGTTATTATTG+GGG | + | chr1.1:70737173-70737192 | MS.gene88902:intron | 20.0% |
| !!! | CTCAGTATATTTGTTATTAT+TGG | + | chr1.1:70737171-70737190 | MS.gene88902:intron | 20.0% |
| !!! | GCTTTTGTTCTAATTTTTTT+TGG | + | chr1.1:70739225-70739244 | MS.gene88902:intron | 20.0% |
| !!! | GTGTTTTTTTTGTTTGTTTT+GGG | + | chr1.1:70736926-70736945 | MS.gene88902:intron | 20.0% |
| !!! | TCATTTTCTCAAATTATTAC+CGG | + | chr1.1:70738640-70738659 | MS.gene88902:intron | 20.0% |
| !!! | TGATGGATAATAATGATATT+GGG | + | chr1.1:70739356-70739375 | MS.gene88902:CDS | 20.0% |
| !!! | TGTGTTTTTTTTGTTTGTTT+TGG | + | chr1.1:70736925-70736944 | MS.gene88902:intron | 20.0% |
| !!! | TTTTAGCTCATTTTTCATTT+GGG | + | chr1.1:70736719-70736738 | MS.gene88902:intron | 20.0% |
| ! | AAACAAACATGAAGAAGTAA+CGG | - | chr1.1:70739276-70739295 | None:intergenic | 25.0% |
| ! | AATACACAAAAGATGATAAC+TGG | - | chr1.1:70738293-70738312 | None:intergenic | 25.0% |
| ! | ATCCATTTATTTCCATTGTT+GGG | + | chr1.1:70738439-70738458 | MS.gene88902:intron | 25.0% |
| ! | ATCTGATGACAAAATTGAAT+CGG | - | chr1.1:70740183-70740202 | None:intergenic | 25.0% |
| ! | CTGAATGATGAAAATATTCA+TGG | - | chr1.1:70739798-70739817 | None:intergenic | 25.0% |
| ! | GACCTAAAAATATATACTGT+GGG | - | chr1.1:70738841-70738860 | None:intergenic | 25.0% |
| ! | GTAATCATAAGTACAAAGTT+CGG | - | chr1.1:70737055-70737074 | None:intergenic | 25.0% |
| ! | GTTGAATGTTGAGTATTATT+GGG | + | chr1.1:70736892-70736911 | MS.gene88902:intron | 25.0% |
| ! | TAAAAGTAGAAGAAAGAATG+AGG | - | chr1.1:70736704-70736723 | None:intergenic | 25.0% |
| ! | TATAGATCGTTACAAAAGAT+TGG | - | chr1.1:70738805-70738824 | None:intergenic | 25.0% |
| ! | TATCCATTTATTTCCATTGT+TGG | + | chr1.1:70738438-70738457 | MS.gene88902:intron | 25.0% |
| ! | TCTACAATTGTATAATCAGT+GGG | + | chr1.1:70736952-70736971 | MS.gene88902:intron | 25.0% |
| ! | TGTTGAATGTTGAGTATTAT+TGG | + | chr1.1:70736891-70736910 | MS.gene88902:intron | 25.0% |
| ! | TTCTACAATTGTATAATCAG+TGG | + | chr1.1:70736951-70736970 | MS.gene88902:intron | 25.0% |
| ! | TTGTTCAAAAAAGACAGTAT+AGG | - | chr1.1:70738066-70738085 | None:intergenic | 25.0% |
| ! | TTTGTACTATTAATGCATCA+GGG | + | chr1.1:70738002-70738021 | MS.gene88902:intron | 25.0% |
| !! | ACATAATGCCTTAATGTTTT+GGG | + | chr1.1:70737538-70737557 | MS.gene88902:intron | 25.0% |
| !! | ACATTAAGGCATTATGTATA+TGG | - | chr1.1:70737535-70737554 | None:intergenic | 25.0% |
| !! | ATCCCACAGTATATATTTTT+AGG | + | chr1.1:70738836-70738855 | MS.gene88902:intron | 25.0% |
| !! | CAATTTTCCATTTGTATCTT+TGG | + | chr1.1:70737229-70737248 | MS.gene88902:intron | 25.0% |
| !! | CTGATGGATAATAATGATAT+TGG | + | chr1.1:70739355-70739374 | MS.gene88902:CDS | 25.0% |
| !! | CTTTTGCAGAAATTCATATT+GGG | + | chr1.1:70738203-70738222 | MS.gene88902:intron | 25.0% |
| !! | GCATTTTCTTCATATTATTC+AGG | + | chr1.1:70738335-70738354 | MS.gene88902:CDS | 25.0% |
| !! | TACATAATGCCTTAATGTTT+TGG | + | chr1.1:70737537-70737556 | MS.gene88902:intron | 25.0% |
| !! | TAGAAGTATATGCATAAACA+TGG | + | chr1.1:70737877-70737896 | MS.gene88902:intron | 25.0% |
| !! | TCAGAAGTCATTATTTCTTT+GGG | - | chr1.1:70737783-70737802 | None:intergenic | 25.0% |
| !! | TCTTTTGCAGAAATTCATAT+TGG | + | chr1.1:70738202-70738221 | MS.gene88902:intron | 25.0% |
| !! | TGTTTGTTGATTATTGAAGA+AGG | + | chr1.1:70737333-70737352 | MS.gene88902:intron | 25.0% |
| !! | TTCAGAAGTCATTATTTCTT+TGG | - | chr1.1:70737784-70737803 | None:intergenic | 25.0% |
| !!! | AACTGTACTATTTTGTTATG+TGG | + | chr1.1:70739747-70739766 | MS.gene88902:intron | 25.0% |
| !!! | CTTTTAGCTCATTTTTCATT+TGG | + | chr1.1:70736718-70736737 | MS.gene88902:intron | 25.0% |
| !!! | TGTTTGATTTTACTAAAGGA+AGG | + | chr1.1:70738731-70738750 | MS.gene88902:intron | 25.0% |
| AAAAAGACAGTATAGGAGAT+TGG | - | chr1.1:70738059-70738078 | None:intergenic | 30.0% | |
| AACATTTAACAGAACTTACG+TGG | - | chr1.1:70738397-70738416 | None:intergenic | 30.0% | |
| AATATTTCACCTTTACAGGA+AGG | - | chr1.1:70739022-70739041 | None:intergenic | 30.0% | |
| AATCCAGACTCAAACATATT+TGG | + | chr1.1:70737007-70737026 | MS.gene88902:intron | 30.0% | |
| ACAAAAGAAGTAATGGTCAA+TGG | + | chr1.1:70738996-70739015 | MS.gene88902:CDS | 30.0% | |
| ACCAAAAAAATTGTGAGTGT+TGG | + | chr1.1:70737108-70737127 | MS.gene88902:intron | 30.0% | |
| ACTTTGTACTTATGATTACG+AGG | + | chr1.1:70737056-70737075 | MS.gene88902:intron | 30.0% | |
| ATGTGGAAATTAATACGCAA+AGG | + | chr1.1:70739764-70739783 | MS.gene88902:intron | 30.0% | |
| CAAACATCCAAAGATACAAA+TGG | - | chr1.1:70737239-70737258 | None:intergenic | 30.0% | |
| CCAAAAAAATTGTGAGTGTT+GGG | + | chr1.1:70737109-70737128 | MS.gene88902:intron | 30.0% | |
| CTCGATTAAAAACATTGATC+CGG | - | chr1.1:70739878-70739897 | None:intergenic | 30.0% | |
| CTTATTGTTTCATCTCTTTG+TGG | + | chr1.1:70739428-70739447 | MS.gene88902:CDS | 30.0% | |
| GGACCTAAAAATATATACTG+TGG | - | chr1.1:70738842-70738861 | None:intergenic | 30.0% | |
| GGATAATAATGATATTGGGA+CGG | + | chr1.1:70739360-70739379 | MS.gene88902:CDS | 30.0% | |
| GTTGAAGATGATCTAGATAT+CGG | + | chr1.1:70740056-70740075 | MS.gene88902:CDS | 30.0% | |
| GTTTGTACTATTAATGCATC+AGG | + | chr1.1:70738001-70738020 | MS.gene88902:intron | 30.0% | |
| TACCCCATTGATAAAGTAAA+GGG | + | chr1.1:70737751-70737770 | MS.gene88902:intron | 30.0% | |
| TCACAATATTTCACCTTTAC+AGG | - | chr1.1:70739026-70739045 | None:intergenic | 30.0% | |
| TCACCCTTTACTTTATCAAT+GGG | - | chr1.1:70737757-70737776 | None:intergenic | 30.0% | |
| TCAGATATGATTACAATCAC+TGG | + | chr1.1:70737285-70737304 | MS.gene88902:intron | 30.0% | |
| TCTGATGACAAAATTGAATC+GGG | - | chr1.1:70740182-70740201 | None:intergenic | 30.0% | |
| TGAAAGATATAGTGCATGAT+AGG | + | chr1.1:70737807-70737826 | MS.gene88902:intron | 30.0% | |
| TGAATTTCTGCAAAAGATTC+AGG | - | chr1.1:70738199-70738218 | None:intergenic | 30.0% | |
| TTACCCCATTGATAAAGTAA+AGG | + | chr1.1:70737750-70737769 | MS.gene88902:intron | 30.0% | |
| ! | AACATTGAAAGCATAACTGA+AGG | - | chr1.1:70737317-70737336 | None:intergenic | 30.0% |
| ! | CTGTTAATGCTGTAATCTTT+TGG | + | chr1.1:70738095-70738114 | MS.gene88902:intron | 30.0% |
| ! | CTTCTTCATGTTTGTTTCTT+CGG | + | chr1.1:70739279-70739298 | MS.gene88902:CDS | 30.0% |
| ! | TCTTTTGTGTATTTGTAGCA+AGG | + | chr1.1:70738300-70738319 | MS.gene88902:CDS | 30.0% |
| !! | ATTTTACATCAAGGTTCTGA+TGG | + | chr1.1:70739339-70739358 | MS.gene88902:CDS | 30.0% |
| !! | TATTTGTTATTATTGGGGAG+AGG | + | chr1.1:70737178-70737197 | MS.gene88902:intron | 30.0% |
| !! | TTGGTTTTCTAGTCAACATT+GGG | + | chr1.1:70737972-70737991 | MS.gene88902:intron | 30.0% |
| !!! | AGGATATGCTATTTTAGTAG+TGG | + | chr1.1:70738355-70738374 | MS.gene88902:CDS | 30.0% |
| !!! | CAGTATATATTTTTAGGTCC+TGG | + | chr1.1:70738842-70738861 | MS.gene88902:intron | 30.0% |
| !!! | TTTGGTTTTCTAGTCAACAT+TGG | + | chr1.1:70737971-70737990 | MS.gene88902:intron | 30.0% |
| !!! | TTTTTTTGGTTTTAACCCTC+CGG | - | chr1.1:70737098-70737117 | None:intergenic | 30.0% |
| AAAAGAGAAATTGACTGACC+TGG | - | chr1.1:70739501-70739520 | None:intergenic | 35.0% | |
| ATTATGAATGAGAGCAGTGT+TGG | + | chr1.1:70737492-70737511 | MS.gene88902:intron | 35.0% | |
| ATTCAGAATAGAAGGAGCAA+TGG | + | chr1.1:70740134-70740153 | MS.gene88902:CDS | 35.0% | |
| ATTGGTTGGATTAAATGGTC+TGG | + | chr1.1:70737692-70737711 | MS.gene88902:intron | 35.0% | |
| CAAACCAAGGAAATCTGAAA+GGG | + | chr1.1:70739592-70739611 | MS.gene88902:intron | 35.0% | |
| CACCCTTTACTTTATCAATG+GGG | - | chr1.1:70737756-70737775 | None:intergenic | 35.0% | |
| CAGAAACTATGTCTCATCAA+AGG | + | chr1.1:70740310-70740329 | MS.gene88902:CDS | 35.0% | |
| CAGGAGATAATTACGAGATA+TGG | - | chr1.1:70738180-70738199 | None:intergenic | 35.0% | |
| CATTAAAATCACAGATGCAG+GGG | - | chr1.1:70739407-70739426 | None:intergenic | 35.0% | |
| CATTACTTCCTTTCCAAACT+TGG | - | chr1.1:70736664-70736683 | None:intergenic | 35.0% | |
| CCATTAAAATCACAGATGCA+GGG | - | chr1.1:70739408-70739427 | None:intergenic | 35.0% | |
| CTCACCCTTTACTTTATCAA+TGG | - | chr1.1:70737758-70737777 | None:intergenic | 35.0% | |
| CTCTCATTCATAATCGATGT+GGG | - | chr1.1:70737486-70737505 | None:intergenic | 35.0% | |
| CTTGATGTAAAATGCTGAGA+AGG | - | chr1.1:70739332-70739351 | None:intergenic | 35.0% | |
| GAAAACCAAAACACTTCAGT+AGG | - | chr1.1:70737961-70737980 | None:intergenic | 35.0% | |
| GTCCCAACAATGGAAATAAA+TGG | - | chr1.1:70738444-70738463 | None:intergenic | 35.0% | |
| GTTTGTAACTATGCAAACCA+AGG | + | chr1.1:70739579-70739598 | MS.gene88902:intron | 35.0% | |
| TAGCCAAATATGTTTGAGTC+TGG | - | chr1.1:70737013-70737032 | None:intergenic | 35.0% | |
| TATGAATCTTCTACAGTAGC+CGG | + | chr1.1:70738942-70738961 | MS.gene88902:CDS | 35.0% | |
| TATTGAAGATATCACAGCGT+AGG | + | chr1.1:70740087-70740106 | MS.gene88902:CDS | 35.0% | |
| TCATAACGAAACTCTTCTTC+TGG | - | chr1.1:70738927-70738946 | None:intergenic | 35.0% | |
| TCTAGATCATCTTCAACCTT+AGG | - | chr1.1:70740053-70740072 | None:intergenic | 35.0% | |
| TCTCAAATTATTACCGGTGT+CGG | + | chr1.1:70738646-70738665 | MS.gene88902:intron | 35.0% | |
| TCTTCTTCATTGATGTGCTT+GGG | + | chr1.1:70739189-70739208 | MS.gene88902:intron | 35.0% | |
| TGAGACATAGTTTCTGCTTT+CGG | - | chr1.1:70740306-70740325 | None:intergenic | 35.0% | |
| TGCAGAAATTCATATTGGGA+GGG | + | chr1.1:70738207-70738226 | MS.gene88902:intron | 35.0% | |
| TTATTTCCATTGTTGGGACT+TGG | + | chr1.1:70738445-70738464 | MS.gene88902:intron | 35.0% | |
| TTCAACACAGTTGTTGCATA+TGG | - | chr1.1:70739090-70739109 | None:intergenic | 35.0% | |
| TTCTTCTTCATTGATGTGCT+TGG | + | chr1.1:70739188-70739207 | MS.gene88902:intron | 35.0% | |
| TTGCAGAAATTCATATTGGG+AGG | + | chr1.1:70738206-70738225 | MS.gene88902:intron | 35.0% | |
| ! | ACCATTACTTCTTTTGTTCG+TGG | - | chr1.1:70738993-70739012 | None:intergenic | 35.0% |
| ! | CAGTGTTGGATATATAAGAG+AGG | + | chr1.1:70737506-70737525 | MS.gene88902:intron | 35.0% |
| ! | CCATTACTTCTTTTGTTCGT+GGG | - | chr1.1:70738992-70739011 | None:intergenic | 35.0% |
| ! | CTTCTCAGCATTTTACATCA+AGG | + | chr1.1:70739330-70739349 | MS.gene88902:CDS | 35.0% |
| ! | GCAAATCTTTTGAATGCACA+AGG | + | chr1.1:70739675-70739694 | MS.gene88902:intron | 35.0% |
| ! | TATTTGTAGCAAGGCATCTT+CGG | + | chr1.1:70738309-70738328 | MS.gene88902:CDS | 35.0% |
| ! | TCTGTATCGGAAGTTTTCAT+AGG | - | chr1.1:70739847-70739866 | None:intergenic | 35.0% |
| ! | TGGGTATGTTCTAGATTTCT+GGG | + | chr1.1:70736738-70736757 | MS.gene88902:intron | 35.0% |
| ! | TTCATCTCTTTGTGGTTTGT+TGG | + | chr1.1:70739436-70739455 | MS.gene88902:CDS | 35.0% |
| ! | TTGGGTATGTTCTAGATTTC+TGG | + | chr1.1:70736737-70736756 | MS.gene88902:intron | 35.0% |
| !! | CGGATCAATGTTTTTAATCG+AGG | + | chr1.1:70739876-70739895 | MS.gene88902:CDS | 35.0% |
| !! | TAATGCCTTAATGTTTTGGG+TGG | + | chr1.1:70737541-70737560 | MS.gene88902:intron | 35.0% |
| !!! | CCCAACACTCACAATTTTTT+TGG | - | chr1.1:70737112-70737131 | None:intergenic | 35.0% |
| AATCGGGTTCAGCTGTATTA+TGG | - | chr1.1:70740166-70740185 | None:intergenic | 40.0% | |
| ACGAGGACATTCAGAATAGA+AGG | + | chr1.1:70740126-70740145 | MS.gene88902:CDS | 40.0% | |
| AGAAATTCATATTGGGAGGG+AGG | + | chr1.1:70738210-70738229 | MS.gene88902:intron | 40.0% | |
| AGAAGGATGACATTCATGTC+AGG | + | chr1.1:70737350-70737369 | MS.gene88902:intron | 40.0% | |
| ATAATGATATTGGGACGGTG+TGG | + | chr1.1:70739365-70739384 | MS.gene88902:CDS | 40.0% | |
| ATCGGGTTCAGCTGTATTAT+GGG | - | chr1.1:70740165-70740184 | None:intergenic | 40.0% | |
| CAACAACAGAGTGATAAGCA+GGG | - | chr1.1:70738261-70738280 | None:intergenic | 40.0% | |
| CATCTCCACCCAAAACATTA+AGG | - | chr1.1:70737549-70737568 | None:intergenic | 40.0% | |
| CCCACGAACAAAAGAAGTAA+TGG | + | chr1.1:70738989-70739008 | MS.gene88902:CDS | 40.0% | |
| CTAACAGGTAAGTAGGAAGA+TGG | - | chr1.1:70738538-70738557 | None:intergenic | 40.0% | |
| CTTACCTGTTAGATGAAGCA+CGG | + | chr1.1:70738546-70738565 | MS.gene88902:intron | 40.0% | |
| GATCATCTTCAACCTTAGGA+CGG | - | chr1.1:70740049-70740068 | None:intergenic | 40.0% | |
| GCAAACCAAGGAAATCTGAA+AGG | + | chr1.1:70739591-70739610 | MS.gene88902:intron | 40.0% | |
| GCCATTAAAATCACAGATGC+AGG | - | chr1.1:70739409-70739428 | None:intergenic | 40.0% | |
| GCTCTCATTCATAATCGATG+TGG | - | chr1.1:70737487-70737506 | None:intergenic | 40.0% | |
| GCTTCATCTAACAGGTAAGT+AGG | - | chr1.1:70738545-70738564 | None:intergenic | 40.0% | |
| GCTTTCGGTGACATTTGAAT+TGG | - | chr1.1:70740291-70740310 | None:intergenic | 40.0% | |
| GGCTAGACTTTACTTAGCTT+TGG | + | chr1.1:70737028-70737047 | MS.gene88902:intron | 40.0% | |
| GGGTCTGTGATTTCTTTAGT+AGG | + | chr1.1:70736758-70736777 | MS.gene88902:intron | 40.0% | |
| GTACCTTATAAGCACAAACC+AGG | + | chr1.1:70739480-70739499 | MS.gene88902:CDS | 40.0% | |
| TAACGAAACTCTTCTTCTGG+TGG | - | chr1.1:70738924-70738943 | None:intergenic | 40.0% | |
| TCAACAACAGAGTGATAAGC+AGG | - | chr1.1:70738262-70738281 | None:intergenic | 40.0% | |
| TTGGGAAAGAAGTGGAAACT+GGG | + | chr1.1:70740244-70740263 | MS.gene88902:CDS | 40.0% | |
| TTTGAGTAGAGCTATCATGG+AGG | + | chr1.1:70737398-70737417 | MS.gene88902:intron | 40.0% | |
| TTTGAGTCTGGATTCGAACT+CGG | - | chr1.1:70737001-70737020 | None:intergenic | 40.0% | |
| ! | CCCTGCATCTGTGATTTTAA+TGG | + | chr1.1:70739405-70739424 | MS.gene88902:CDS | 40.0% |
| ! | TGACCTGGTTTGTGCTTATA+AGG | - | chr1.1:70739486-70739505 | None:intergenic | 40.0% |
| ! | TGCTTTGAGTAGAGCTATCA+TGG | + | chr1.1:70737395-70737414 | MS.gene88902:intron | 40.0% |
| ! | TTGTTCAAGAGGAGGTACAA+AGG | + | chr1.1:70739967-70739986 | MS.gene88902:CDS | 40.0% |
| ! | TTTCAGGGCTTTTGTTCAAG+AGG | + | chr1.1:70739956-70739975 | MS.gene88902:CDS | 40.0% |
| ! | TTTTACTTCTGCACGTGATC+CGG | + | chr1.1:70738875-70738894 | MS.gene88902:CDS | 40.0% |
| !! | AAGTAAAACAGAGAAGCACC+AGG | - | chr1.1:70738863-70738882 | None:intergenic | 40.0% |
| !! | ATCTCTTTGTGGTTTGTTGG+TGG | + | chr1.1:70739439-70739458 | MS.gene88902:CDS | 40.0% |
| !! | TGGGACTTGGTTTGTGTTTA+AGG | + | chr1.1:70738458-70738477 | MS.gene88902:intron | 40.0% |
| !! | TTGCACCTACTGAAGTGTTT+TGG | + | chr1.1:70737953-70737972 | MS.gene88902:intron | 40.0% |
| !!! | CATGTCAGGTGGTTTTTTGT+TGG | + | chr1.1:70737364-70737383 | MS.gene88902:intron | 40.0% |
| !!! | TCTGAGCTAGTTTTTGTTGC+TGG | + | chr1.1:70736790-70736809 | MS.gene88902:intron | 40.0% |
| AACTTCCGATACAGAGCTGA+TGG | + | chr1.1:70739852-70739871 | MS.gene88902:CDS | 45.0% | |
| ACAGTCAGAAGTCACTTCAC+AGG | - | chr1.1:70737438-70737457 | None:intergenic | 45.0% | |
| AGCCCTCAAGGAACAATTTC+AGG | + | chr1.1:70739940-70739959 | MS.gene88902:CDS | 45.0% | |
| AGCCCTGAAATTGTTCCTTG+AGG | - | chr1.1:70739946-70739965 | None:intergenic | 45.0% | |
| AGGATGACATTCATGTCAGG+TGG | + | chr1.1:70737353-70737372 | MS.gene88902:intron | 45.0% | |
| AGTGGGTCAACCAAGTGATT+CGG | + | chr1.1:70736969-70736988 | MS.gene88902:intron | 45.0% | |
| ATCGCCCTTTCAGATTTCCT+TGG | - | chr1.1:70739599-70739618 | None:intergenic | 45.0% | |
| ATGCAGTGTCAAGGTCTCTT+AGG | + | chr1.1:70737566-70737585 | MS.gene88902:intron | 45.0% | |
| ATTACGAGGCCTCATTTCCT+AGG | + | chr1.1:70737070-70737089 | MS.gene88902:intron | 45.0% | |
| ATTCATATTGGGAGGGAGGT+TGG | + | chr1.1:70738214-70738233 | MS.gene88902:CDS | 45.0% | |
| CACAAACCAAGTCCCAACAA+TGG | - | chr1.1:70738454-70738473 | None:intergenic | 45.0% | |
| CACGATACAAAAACCGACAC+CGG | - | chr1.1:70738662-70738681 | None:intergenic | 45.0% | |
| CAGTCAGAAGTCACTTCACA+GGG | - | chr1.1:70737437-70737456 | None:intergenic | 45.0% | |
| CCACAATACGATCTGATGCT+AGG | + | chr1.1:70740213-70740232 | MS.gene88902:CDS | 45.0% | |
| CCTAGCATCAGATCGTATTG+TGG | - | chr1.1:70740216-70740235 | None:intergenic | 45.0% | |
| CGATCTCCACCTAAATCATC+TGG | - | chr1.1:70740026-70740045 | None:intergenic | 45.0% | |
| CGTGAACCAGATGATTTAGG+TGG | + | chr1.1:70740017-70740036 | MS.gene88902:CDS | 45.0% | |
| GAATATTGAGCAACTCGACG+AGG | + | chr1.1:70740109-70740128 | MS.gene88902:CDS | 45.0% | |
| GAATGCACAAGGCATGCTAT+GGG | + | chr1.1:70739686-70739705 | MS.gene88902:intron | 45.0% | |
| GAATTCCTCGGAATGATACC+CGG | - | chr1.1:70738897-70738916 | None:intergenic | 45.0% | |
| GCACAGAAATAAAGCCCTCA+AGG | + | chr1.1:70739928-70739947 | MS.gene88902:CDS | 45.0% | |
| GCCCTCAAGGAACAATTTCA+GGG | + | chr1.1:70739941-70739960 | MS.gene88902:CDS | 45.0% | |
| GCCCTGAAATTGTTCCTTGA+GGG | - | chr1.1:70739945-70739964 | None:intergenic | 45.0% | |
| GGACGTGAACCAGATGATTT+AGG | + | chr1.1:70740014-70740033 | MS.gene88902:CDS | 45.0% | |
| GGTTGGATTAAATGGTCTGG+AGG | + | chr1.1:70737695-70737714 | MS.gene88902:intron | 45.0% | |
| GTGAAGTGACTTCTGACTGT+TGG | + | chr1.1:70737438-70737457 | MS.gene88902:intron | 45.0% | |
| GTTGGGAAAGAAGTGGAAAC+TGG | + | chr1.1:70740243-70740262 | MS.gene88902:CDS | 45.0% | |
| TCGGGTTCAGCTGTATTATG+GGG | - | chr1.1:70740164-70740183 | None:intergenic | 45.0% | |
| TGAATGCACAAGGCATGCTA+TGG | + | chr1.1:70739685-70739704 | MS.gene88902:intron | 45.0% | |
| TGCAGTGTCAAGGTCTCTTA+GGG | + | chr1.1:70737567-70737586 | MS.gene88902:intron | 45.0% | |
| TGCATCGTGAGACACAAACA+CGG | - | chr1.1:70738686-70738705 | None:intergenic | 45.0% | |
| TTTACTTCTGCACGTGATCC+GGG | + | chr1.1:70738876-70738895 | MS.gene88902:CDS | 45.0% | |
| TTTCGATCACCATTGCCCTT+GGG | + | chr1.1:70739112-70739131 | MS.gene88902:CDS | 45.0% | |
| ! | CTTTTGTTCGTGGGAACTGA+AGG | - | chr1.1:70738983-70739002 | None:intergenic | 45.0% |
| ! | TCTGGTGGATGTGAATTCCT+CGG | - | chr1.1:70738909-70738928 | None:intergenic | 45.0% |
| ! | TGGGTTTTTCCAATGTGCAG+AGG | + | chr1.1:70739245-70739264 | MS.gene88902:intron | 45.0% |
| !! | AAGGCTTGGTGTTTGTTGTC+CGG | - | chr1.1:70738964-70738983 | None:intergenic | 45.0% |
| !! | TGGTTTGTTGGTGGACTAAC+TGG | + | chr1.1:70739448-70739467 | MS.gene88902:CDS | 45.0% |
| !! | GTAAATATATATAATATATT+AGG | - | chr1.1:70738516-70738535 | None:intergenic | 5.0% |
| ACGGTAGTTCCTCTGCACAT+TGG | - | chr1.1:70739257-70739276 | None:intergenic | 50.0% | |
| AGGCCTCATTTCCTAGGAAC+CGG | + | chr1.1:70737076-70737095 | MS.gene88902:intron | 50.0% | |
| ATCGTACCAGACCGATGCAT+TGG | - | chr1.1:70739142-70739161 | None:intergenic | 50.0% | |
| CAAAGCGCGTGTACCAAGTT+TGG | + | chr1.1:70736648-70736667 | MS.gene88902:CDS | 50.0% | |
| CGCGTGTACCAAGTTTGGAA+AGG | + | chr1.1:70736653-70736672 | MS.gene88902:CDS | 50.0% | |
| CGGGAAATGACTGTAGTCAG+CGG | - | chr1.1:70739993-70740012 | None:intergenic | 50.0% | |
| CGTCGAACACACCTAATTCG+AGG | - | chr1.1:70738577-70738596 | None:intergenic | 50.0% | |
| CTCATTTCCTAGGAACCGGA+GGG | + | chr1.1:70737080-70737099 | MS.gene88902:intron | 50.0% | |
| CTGACTACAGTCATTTCCCG+GGG | + | chr1.1:70739993-70740012 | MS.gene88902:CDS | 50.0% | |
| GCTGACTACAGTCATTTCCC+GGG | + | chr1.1:70739992-70740011 | MS.gene88902:CDS | 50.0% | |
| GGTCAATGGCCTTCCTGTAA+AGG | + | chr1.1:70739010-70739029 | MS.gene88902:CDS | 50.0% | |
| GTGGGTCAACCAAGTGATTC+GGG | + | chr1.1:70736970-70736989 | MS.gene88902:intron | 50.0% | |
| GTGTCCGTGCTTCATCTAAC+AGG | - | chr1.1:70738553-70738572 | None:intergenic | 50.0% | |
| GTTGGGGAGTCCATAGTCTA+GGG | - | chr1.1:70737629-70737648 | None:intergenic | 50.0% | |
| GTTTCGATCACCATTGCCCT+TGG | + | chr1.1:70739111-70739130 | MS.gene88902:CDS | 50.0% | |
| TAGGTGCAAGTGTGCAACAG+AGG | - | chr1.1:70737942-70737961 | None:intergenic | 50.0% | |
| TCGGATTCTCCCGAATCACT+TGG | - | chr1.1:70736982-70737001 | None:intergenic | 50.0% | |
| TGATATTGGGACGGTGTGGA+AGG | + | chr1.1:70739369-70739388 | MS.gene88902:CDS | 50.0% | |
| TGATGCTAGGCACTCGAGTT+GGG | + | chr1.1:70740226-70740245 | MS.gene88902:CDS | 50.0% | |
| TGGTATTTGGACCTGATGCC+AGG | + | chr1.1:70738234-70738253 | MS.gene88902:CDS | 50.0% | |
| TGTTGGGGAGTCCATAGTCT+AGG | - | chr1.1:70737630-70737649 | None:intergenic | 50.0% | |
| TTGGGGAGTCCATAGTCTAG+GGG | - | chr1.1:70737628-70737647 | None:intergenic | 50.0% | |
| ! | AATCATCTGGTTCACGTCCC+CGG | - | chr1.1:70740013-70740032 | None:intergenic | 50.0% |
| ! | CAGGGCTTTTGTTCAAGAGG+AGG | + | chr1.1:70739959-70739978 | MS.gene88902:CDS | 50.0% |
| ! | CGCTGACTACAGTCATTTCC+CGG | + | chr1.1:70739991-70740010 | MS.gene88902:CDS | 50.0% |
| !! | CACTCGAGTTGGGAAAGAAG+TGG | + | chr1.1:70740236-70740255 | MS.gene88902:CDS | 50.0% |
| !! | CATATGTGTCGGTGTCGTGT+CGG | - | chr1.1:70738605-70738624 | None:intergenic | 50.0% |
| !! | GTTTTAACCCTCCGGTTCCT+AGG | - | chr1.1:70737090-70737109 | None:intergenic | 50.0% |
| !! | TTGGGAGGGAGGTTGGTATT+TGG | + | chr1.1:70738221-70738240 | MS.gene88902:CDS | 50.0% |
| AGCAATGCGAGCAACGAGGA+GGG | - | chr1.1:70739067-70739086 | None:intergenic | 55.0% | |
| AGCCAGCTGTAATCAGGCAC+AGG | - | chr1.1:70737146-70737165 | None:intergenic | 55.0% | |
| ATAAGCAGGGACCTGGCATC+AGG | - | chr1.1:70738248-70738267 | None:intergenic | 55.0% | |
| ATGGAGCAATGCGAGCAACG+AGG | - | chr1.1:70739071-70739090 | None:intergenic | 55.0% | |
| CAGAGTGATAAGCAGGGACC+TGG | - | chr1.1:70738255-70738274 | None:intergenic | 55.0% | |
| CCTCATTTCCTAGGAACCGG+AGG | + | chr1.1:70737079-70737098 | MS.gene88902:intron | 55.0% | |
| CCTCCGGTTCCTAGGAAATG+AGG | - | chr1.1:70737082-70737101 | None:intergenic | 55.0% | |
| CTGATGCTAGGCACTCGAGT+TGG | + | chr1.1:70740225-70740244 | MS.gene88902:CDS | 55.0% | |
| GATCACCATTGCCCTTGGGT+GGG | + | chr1.1:70739116-70739135 | MS.gene88902:CDS | 55.0% | |
| GCAAGTGTGCAACAGAGGAG+TGG | - | chr1.1:70737937-70737956 | None:intergenic | 55.0% | |
| GCACGGACACTCCTCGAATT+AGG | + | chr1.1:70738563-70738582 | MS.gene88902:intron | 55.0% | |
| GGAGCAAGCCAGCTGTAATC+AGG | - | chr1.1:70737152-70737171 | None:intergenic | 55.0% | |
| GTCAAGGTCTCTTAGGGTCC+TGG | + | chr1.1:70737573-70737592 | MS.gene88902:intron | 55.0% | |
| GTGATCCGGGTATCATTCCG+AGG | + | chr1.1:70738889-70738908 | MS.gene88902:CDS | 55.0% | |
| GTTCGTGGGAACTGAAGGCT+TGG | - | chr1.1:70738978-70738997 | None:intergenic | 55.0% | |
| TCCGATACAGAGCTGATGGC+CGG | + | chr1.1:70739856-70739875 | MS.gene88902:CDS | 55.0% | |
| TCCGGCCATCAGCTCTGTAT+CGG | - | chr1.1:70739860-70739879 | None:intergenic | 55.0% | |
| TGCCTGTGCCTGATTACAGC+TGG | + | chr1.1:70737141-70737160 | MS.gene88902:intron | 55.0% | |
| TGGGTGGAGATGCAGTGTCA+AGG | + | chr1.1:70737557-70737576 | MS.gene88902:intron | 55.0% | |
| ! | ATCATCTGGTTCACGTCCCC+GGG | - | chr1.1:70740012-70740031 | None:intergenic | 55.0% |
| ! | CGGGAATGGGCTCAAATTCC+AGG | - | chr1.1:70737594-70737613 | None:intergenic | 55.0% |
| ! | TCCATAGTCTAGGGGAGTGC+CGG | - | chr1.1:70737620-70737639 | None:intergenic | 55.0% |
| AGGTGGAGATCGCCGTCCTA+AGG | + | chr1.1:70740034-70740053 | MS.gene88902:CDS | 60.0% | |
| ATTGGCCCACCCAAGGGCAA+TGG | - | chr1.1:70739124-70739143 | None:intergenic | 60.0% | |
| CCTTGGGTGGGCCAATGCAT+CGG | + | chr1.1:70739128-70739147 | MS.gene88902:CDS | 60.0% | |
| CGATCACCATTGCCCTTGGG+TGG | + | chr1.1:70739115-70739134 | MS.gene88902:CDS | 60.0% | |
| GAGCAATGCGAGCAACGAGG+AGG | - | chr1.1:70739068-70739087 | None:intergenic | 60.0% | |
| TTTGAGCCCATTCCCGCTCC+CGG | + | chr1.1:70737598-70737617 | MS.gene88902:intron | 60.0% | |
| ! | CGATGCATTGGCCCACCCAA+GGG | - | chr1.1:70739130-70739149 | None:intergenic | 60.0% |
| !! | CCATAGTCTAGGGGAGTGCC+GGG | - | chr1.1:70737619-70737638 | None:intergenic | 60.0% |
| CCCGGCACTCCCCTAGACTA+TGG | + | chr1.1:70737616-70737635 | MS.gene88902:intron | 65.0% | |
| ! | CCGATGCATTGGCCCACCCA+AGG | - | chr1.1:70739131-70739150 | None:intergenic | 65.0% |
| ! | GGTGGGCCAATGCATCGGTC+TGG | + | chr1.1:70739133-70739152 | MS.gene88902:CDS | 65.0% |
| !! | GGAGTGCCGGGAGCGGGAAT+GGG | - | chr1.1:70737607-70737626 | None:intergenic | 70.0% |
| !! | GTCTAGGGGAGTGCCGGGAG+CGG | - | chr1.1:70737614-70737633 | None:intergenic | 70.0% |
| !! | TCTAGGGGAGTGCCGGGAGC+GGG | - | chr1.1:70737613-70737632 | None:intergenic | 70.0% |
| !! | GGGAGTGCCGGGAGCGGGAA+TGG | - | chr1.1:70737608-70737627 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 70736641 | 70740346 | 70736641 | ID=MS.gene88902 |
| chr1.1 | mRNA | 70736641 | 70740346 | 70736641 | ID=MS.gene88902.t1;Parent=MS.gene88902 |
| chr1.1 | exon | 70736641 | 70736682 | 70736641 | ID=MS.gene88902.t1.exon1;Parent=MS.gene88902.t1 |
| chr1.1 | CDS | 70736641 | 70736682 | 70736641 | ID=cds.MS.gene88902.t1;Parent=MS.gene88902.t1 |
| chr1.1 | exon | 70738212 | 70738397 | 70738212 | ID=MS.gene88902.t1.exon2;Parent=MS.gene88902.t1 |
| chr1.1 | CDS | 70738212 | 70738397 | 70738212 | ID=cds.MS.gene88902.t1;Parent=MS.gene88902.t1 |
| chr1.1 | exon | 70738858 | 70739154 | 70738858 | ID=MS.gene88902.t1.exon3;Parent=MS.gene88902.t1 |
| chr1.1 | CDS | 70738858 | 70739154 | 70738858 | ID=cds.MS.gene88902.t1;Parent=MS.gene88902.t1 |
| chr1.1 | exon | 70739265 | 70739501 | 70739265 | ID=MS.gene88902.t1.exon4;Parent=MS.gene88902.t1 |
| chr1.1 | CDS | 70739265 | 70739501 | 70739265 | ID=cds.MS.gene88902.t1;Parent=MS.gene88902.t1 |
| chr1.1 | exon | 70739840 | 70740346 | 70739840 | ID=MS.gene88902.t1.exon5;Parent=MS.gene88902.t1 |
| chr1.1 | CDS | 70739840 | 70740346 | 70739840 | ID=cds.MS.gene88902.t1;Parent=MS.gene88902.t1 |
| Gene Sequence |
| Protein sequence |
