Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88921.t1 | XP_003592093.2 | 97.9 | 605 | 11 | 1 | 1 | 605 | 23 | 625 | 0.00E+00 | 1214.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88921.t1 | Q9XIG1 | 69.4 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 1.9e-248 | 859.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88921.t1 | G7IBZ0 | 97.9 | 605 | 11 | 1 | 1 | 605 | 23 | 625 | 0.0e+00 | 1214.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051360 | MS.gene88921 | 0.808666 | 2.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88921.t1 | MTR_1g098640 | 97.851 | 605 | 11 | 1 | 1 | 605 | 23 | 625 | 0.0 | 1220 |
| MS.gene88921.t1 | MTR_1g098640 | 96.694 | 605 | 11 | 2 | 1 | 605 | 23 | 618 | 0.0 | 1197 |
| MS.gene88921.t1 | MTR_1g098640 | 97.778 | 540 | 10 | 1 | 1 | 540 | 23 | 560 | 0.0 | 1083 |
| MS.gene88921.t1 | MTR_1g098640 | 97.881 | 472 | 8 | 1 | 1 | 472 | 23 | 492 | 0.0 | 946 |
| MS.gene88921.t1 | MTR_4g022580 | 54.352 | 563 | 235 | 6 | 29 | 576 | 55 | 610 | 0.0 | 627 |
| MS.gene88921.t1 | MTR_4g022610 | 53.748 | 547 | 235 | 5 | 39 | 574 | 63 | 602 | 0.0 | 610 |
| MS.gene88921.t1 | MTR_4g022610 | 54.086 | 514 | 218 | 5 | 39 | 541 | 63 | 569 | 0.0 | 579 |
| MS.gene88921.t1 | MTR_7g079430 | 56.173 | 486 | 205 | 3 | 91 | 571 | 92 | 574 | 0.0 | 577 |
| MS.gene88921.t1 | MTR_2g043740 | 31.111 | 270 | 129 | 10 | 356 | 572 | 231 | 496 | 2.02e-21 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88921.t1 | AT1G43620 | 69.394 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 0.0 | 860 |
| MS.gene88921.t1 | AT1G43620 | 69.394 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 0.0 | 860 |
| MS.gene88921.t1 | AT1G43620 | 69.394 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 0.0 | 860 |
| MS.gene88921.t1 | AT1G43620 | 69.394 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 0.0 | 860 |
| MS.gene88921.t1 | AT1G43620 | 69.394 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 0.0 | 860 |
| MS.gene88921.t1 | AT1G43620 | 69.394 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 0.0 | 860 |
| MS.gene88921.t1 | AT1G43620 | 69.394 | 611 | 177 | 6 | 3 | 605 | 7 | 615 | 0.0 | 860 |
| MS.gene88921.t1 | AT1G43620 | 78.261 | 437 | 92 | 2 | 172 | 605 | 7 | 443 | 0.0 | 728 |
| MS.gene88921.t1 | AT3G07020 | 52.817 | 568 | 262 | 2 | 15 | 576 | 58 | 625 | 0.0 | 622 |
| MS.gene88921.t1 | AT3G07020 | 52.817 | 568 | 262 | 2 | 15 | 576 | 58 | 625 | 0.0 | 622 |
| MS.gene88921.t1 | AT3G07020 | 55.939 | 522 | 218 | 2 | 67 | 576 | 22 | 543 | 0.0 | 618 |
| MS.gene88921.t1 | AT5G24750 | 33.628 | 113 | 62 | 1 | 460 | 559 | 391 | 503 | 7.81e-17 | 84.3 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACCGCCTCCTTTATATTT+TGG | 0.131145 | 1.1:+70937483 | MS.gene88921:CDS |
| TCTTTGGAGATCAATTCTTT+TGG | 0.269484 | 1.1:+70939436 | MS.gene88921:CDS |
| TTTCTCAAAGTGCTGGTTAT+TGG | 0.284056 | 1.1:+70936652 | MS.gene88921:CDS |
| TGACCTTCAGCTGCTTTCTT+TGG | 0.293929 | 1.1:-70935800 | None:intergenic |
| TCAACATTGAGCTCGGATAT+TGG | 0.298508 | 1.1:-70939501 | None:intergenic |
| TTCTCAAAGTGCTGGTTATT+GGG | 0.310436 | 1.1:+70936653 | MS.gene88921:CDS |
| ACAACAATAGTCCCATTCTT+TGG | 0.313820 | 1.1:+70939420 | MS.gene88921:CDS |
| AGCCTGCACAGCACCTGATT+TGG | 0.315404 | 1.1:+70935842 | MS.gene88921:CDS |
| GACCGAGGTTGGGGCAATCT+AGG | 0.322300 | 1.1:+70938455 | MS.gene88921:CDS |
| GGGAATTATCGACCGAGGTT+GGG | 0.323617 | 1.1:+70938445 | MS.gene88921:CDS |
| TGGTGTAAATTTCTATCCTC+TGG | 0.330664 | 1.1:+70934822 | MS.gene88921:CDS |
| CTGACAGTCTGTCCAATATT+AGG | 0.347761 | 1.1:-70933599 | None:intergenic |
| AATAACAACAGATGTTATAT+TGG | 0.364034 | 1.1:+70938397 | MS.gene88921:CDS |
| TACATCTTGCTGAAGCCCTT+GGG | 0.364963 | 1.1:+70936311 | MS.gene88921:CDS |
| GGAATACCGGTTTCCAAATC+AGG | 0.371953 | 1.1:-70935855 | None:intergenic |
| CTCCCAAATCCAAAATATAA+AGG | 0.373017 | 1.1:-70937492 | None:intergenic |
| TCGAAGGCATGACCTAATAT+TGG | 0.373430 | 1.1:+70933587 | MS.gene88921:CDS |
| GGCTCTTTAGTTGACGTTGT+TGG | 0.374866 | 1.1:+70937393 | MS.gene88921:CDS |
| TTGAGCTCGGATATTGGAAT+TGG | 0.375164 | 1.1:-70939495 | None:intergenic |
| CATTGCATCACAGCTCCTAT+TGG | 0.379859 | 1.1:+70933492 | MS.gene88921:CDS |
| TTGAGGAATGCCCTCATGAT+TGG | 0.382520 | 1.1:+70939013 | MS.gene88921:CDS |
| TGACGGTTCACCTTCATCTA+AGG | 0.395462 | 1.1:+70932377 | MS.gene88921:CDS |
| TTGTCCATACCACTTGGTTT+CGG | 0.398350 | 1.1:-70936952 | None:intergenic |
| AAGAAGTAACTTCCGATGAT+TGG | 0.403909 | 1.1:-70932410 | None:intergenic |
| ATAGATATGGCAAGGAATAA+AGG | 0.406136 | 1.1:+70935744 | MS.gene88921:intron |
| GCTGCCAACTCCATCTCATT+TGG | 0.415971 | 1.1:+70939751 | MS.gene88921:CDS |
| AAGAATTGATCTCCAAAGAA+TGG | 0.420179 | 1.1:-70939432 | None:intergenic |
| ACGGCTACAGGATTAAAATC+TGG | 0.420333 | 1.1:+70939208 | MS.gene88921:CDS |
| GCTAAAAGAGACAGAACAAC+GGG | 0.420460 | 1.1:+70938424 | MS.gene88921:CDS |
| GGCCATTGCGAAGAGACTTC+AGG | 0.423276 | 1.1:+70934043 | MS.gene88921:CDS |
| AATGTTTACTTGCAGGAGTA+TGG | 0.427510 | 1.1:+70934745 | MS.gene88921:intron |
| CTACCGACTCTTCAAAAGAT+TGG | 0.435951 | 1.1:-70933920 | None:intergenic |
| CGGCTACAGGATTAAAATCT+GGG | 0.439445 | 1.1:+70939209 | MS.gene88921:CDS |
| ATTGCAAACCCTCCCGCATA+TGG | 0.441124 | 1.1:+70935897 | MS.gene88921:CDS |
| GTACATCTTGCTGAAGCCCT+TGG | 0.442502 | 1.1:+70936310 | MS.gene88921:CDS |
| GGAATTATCGACCGAGGTTG+GGG | 0.443195 | 1.1:+70938446 | MS.gene88921:CDS |
| ATCTCATCTTCAGCTATTAG+TGG | 0.443955 | 1.1:-70933528 | None:intergenic |
| ATATGCATTTCCCCACCCTT+TGG | 0.444072 | 1.1:+70936623 | MS.gene88921:CDS |
| GGGTTTCTCTCAGTTCCAAT+AGG | 0.445007 | 1.1:-70933507 | None:intergenic |
| GTTGGCAGCGGTAGCTCATC+GGG | 0.445648 | 1.1:-70939737 | None:intergenic |
| AAGACATTTGTAAGGTCAGC+TGG | 0.446615 | 1.1:+70934802 | MS.gene88921:CDS |
| GGAGCGGGAACCACGGCTAC+AGG | 0.453883 | 1.1:+70939196 | MS.gene88921:CDS |
| TAATTGTGGATCTACTGATA+TGG | 0.454178 | 1.1:+70936797 | MS.gene88921:CDS |
| GGGGAATTATCGACCGAGGT+TGG | 0.456470 | 1.1:+70938444 | MS.gene88921:CDS |
| GCGCGTGTTTCTCAAAGTGC+TGG | 0.467890 | 1.1:+70936645 | MS.gene88921:CDS |
| TTCCAAATCAGGTGCTGTGC+AGG | 0.469128 | 1.1:-70935844 | None:intergenic |
| CTTCCCCTCTCCTTAGATGA+AGG | 0.474030 | 1.1:-70932387 | None:intergenic |
| CTAATTTCAAGACATTTGTA+AGG | 0.475925 | 1.1:+70934794 | MS.gene88921:CDS |
| CAAATTGTCATACTTGTGGT+TGG | 0.479952 | 1.1:+70933993 | MS.gene88921:CDS |
| ACAGCACCTGATTTGGAAAC+CGG | 0.484340 | 1.1:+70935849 | MS.gene88921:CDS |
| AAGAATGGGACTATTGTTGT+TGG | 0.485641 | 1.1:-70939417 | None:intergenic |
| AGAATTGATCTCCAAAGAAT+GGG | 0.487173 | 1.1:-70939431 | None:intergenic |
| CGGTATTCCCTTCACAGCTC+AGG | 0.488558 | 1.1:+70935869 | MS.gene88921:CDS |
| AAATCAGGTGCTGTGCAGGC+TGG | 0.495055 | 1.1:-70935840 | None:intergenic |
| TCAGGTGAAATCTCGGACAA+TGG | 0.496008 | 1.1:+70939646 | MS.gene88921:intron |
| AGAATACATCAGAAAGAGTT+GGG | 0.498202 | 1.1:+70939465 | MS.gene88921:CDS |
| AGGAGTATGGTCATCGCGTT+AGG | 0.502334 | 1.1:+70934758 | MS.gene88921:intron |
| CTCTTCGCAATGGCCACAAA+AGG | 0.507208 | 1.1:-70934035 | None:intergenic |
| AATAAAGGTCTGATTCCGTC+TGG | 0.507240 | 1.1:+70935759 | MS.gene88921:CDS |
| ACCGAGGTTGGGGCAATCTA+GGG | 0.507600 | 1.1:+70938456 | MS.gene88921:CDS |
| TAGAATACATCAGAAAGAGT+TGG | 0.509036 | 1.1:+70939464 | MS.gene88921:CDS |
| ACAGCTGTCTTATATAATTG+TGG | 0.509774 | 1.1:+70936783 | MS.gene88921:intron |
| CAGGTGCATCATGGTGGAGC+GGG | 0.512653 | 1.1:+70939181 | MS.gene88921:intron |
| AGTTGGCAGCGGTAGCTCAT+CGG | 0.513549 | 1.1:-70939738 | None:intergenic |
| AAGATGAGGACTCCACATAT+AGG | 0.521439 | 1.1:-70936926 | None:intergenic |
| ATGTATTTCAGGTGAAATCT+CGG | 0.521566 | 1.1:+70939639 | MS.gene88921:intron |
| GAAACACGCGCCAAAGGGTG+GGG | 0.525242 | 1.1:-70936633 | None:intergenic |
| TTTAAATAATAGATATGGCA+AGG | 0.525373 | 1.1:+70935736 | MS.gene88921:intron |
| TTTGAGAAACACGCGCCAAA+GGG | 0.526660 | 1.1:-70936638 | None:intergenic |
| GGTGTAAATTTCTATCCTCT+GGG | 0.527341 | 1.1:+70934823 | MS.gene88921:CDS |
| GCAGCGGTAGCTCATCGGGC+AGG | 0.528550 | 1.1:-70939733 | None:intergenic |
| CTGAGCTGTGAAGGGAATAC+CGG | 0.530044 | 1.1:-70935868 | None:intergenic |
| TCTCATCTTCAGCTATTAGT+GGG | 0.530855 | 1.1:-70933527 | None:intergenic |
| TTCTAATCGCTCACCATATG+CGG | 0.532363 | 1.1:-70935910 | None:intergenic |
| AATAATAGCCTGAGCTGTGA+AGG | 0.532487 | 1.1:-70935877 | None:intergenic |
| ATTTACCAACTGCCTATATG+TGG | 0.534491 | 1.1:+70936914 | MS.gene88921:CDS |
| AACAACACCACTTTGCAAGT+TGG | 0.537111 | 1.1:-70939814 | None:intergenic |
| GGGTGGTGATCCTCGAGTAT+TGG | 0.539944 | 1.1:+70934843 | MS.gene88921:CDS |
| TACATGCTGAAGTATGCAAT+AGG | 0.541098 | 1.1:-70936874 | None:intergenic |
| ACTACACAGTTACCTCTGGC+TGG | 0.542801 | 1.1:-70939554 | None:intergenic |
| GTTACAAATTGTCATACTTG+TGG | 0.543374 | 1.1:+70933989 | MS.gene88921:CDS |
| CAGAAAAGAGAGGGCTTCGA+AGG | 0.543506 | 1.1:+70933571 | MS.gene88921:CDS |
| ACAAATTAAACTCACGTCCA+TGG | 0.545172 | 1.1:-70936361 | None:intergenic |
| ATTGTGAAGAAGATGTGAAT+AGG | 0.545573 | 1.1:-70936337 | None:intergenic |
| TTCACCTTCATCTAAGGAGA+GGG | 0.548305 | 1.1:+70932383 | MS.gene88921:CDS |
| AGAAACACGCGCCAAAGGGT+GGG | 0.550349 | 1.1:-70936634 | None:intergenic |
| TCGGATATTGGAATTGGAGC+AGG | 0.550790 | 1.1:-70939489 | None:intergenic |
| CTTTGAGAAACACGCGCCAA+AGG | 0.550897 | 1.1:-70936639 | None:intergenic |
| GTTTCCTCAATGTTCTGCTG+TGG | 0.552665 | 1.1:+70939038 | MS.gene88921:CDS |
| GAGAAACACGCGCCAAAGGG+TGG | 0.555092 | 1.1:-70936635 | None:intergenic |
| TAAATTCTCAACATTGAGCT+CGG | 0.559134 | 1.1:-70939508 | None:intergenic |
| GGTGATCCTCGAGTATTGGC+AGG | 0.560631 | 1.1:+70934847 | MS.gene88921:CDS |
| TCTAATCGCTCACCATATGC+GGG | 0.563384 | 1.1:-70935909 | None:intergenic |
| ACCACTTAAGTCCTCTTGAG+TGG | 0.567752 | 1.1:+70939783 | MS.gene88921:CDS |
| TGGTGTTGTTTGCCTTGTGG+TGG | 0.568892 | 1.1:+70939827 | MS.gene88921:CDS |
| AAATGAGATGGAGTTGGCAG+CGG | 0.571820 | 1.1:-70939749 | None:intergenic |
| CAGACTGTCAGAGGATGAGA+AGG | 0.575642 | 1.1:+70933611 | MS.gene88921:CDS |
| ACATCTTCTTCACAATGCCA+TGG | 0.575887 | 1.1:+70936344 | MS.gene88921:CDS |
| CTTGGTTTCGGAACAAGATG+AGG | 0.576658 | 1.1:-70936940 | None:intergenic |
| TCCCTAGATTGCCCCAACCT+CGG | 0.576992 | 1.1:-70938457 | None:intergenic |
| CTTTGGTTAGATATTTCAGT+CGG | 0.578080 | 1.1:-70935783 | None:intergenic |
| TTGTTGGTTACTGTTTCTTG+AGG | 0.579357 | 1.1:+70937409 | MS.gene88921:CDS |
| TCCGCGTCTTCCAAATGAGA+TGG | 0.581846 | 1.1:-70939761 | None:intergenic |
| CATGAGGGCATTCCTCAAGA+AGG | 0.582608 | 1.1:-70939008 | None:intergenic |
| TTTGAAGAGTCGGTAGCGAG+CGG | 0.585117 | 1.1:+70933927 | MS.gene88921:CDS |
| AAGTGGTGTTGTTTGCCTTG+TGG | 0.588246 | 1.1:+70939824 | MS.gene88921:CDS |
| GCGGTAGCTCATCGGGCAGG+TGG | 0.590944 | 1.1:-70939730 | None:intergenic |
| TCTTCCAAATGAGATGGAGT+TGG | 0.594347 | 1.1:-70939755 | None:intergenic |
| ATTCAAATAAATCAGTTCCA+CGG | 0.594368 | 1.1:+70933967 | MS.gene88921:CDS |
| GGAGAGGGGAAGCCAATCAT+CGG | 0.595295 | 1.1:+70932398 | MS.gene88921:CDS |
| CTGATATGGTGGGGAATGCG+AGG | 0.599449 | 1.1:+70936811 | MS.gene88921:CDS |
| GATATTTCAGTCGGTCCAGA+CGG | 0.599453 | 1.1:-70935774 | None:intergenic |
| AGATGGCGTTGCTGCAGCAG+TGG | 0.599914 | 1.1:+70939694 | MS.gene88921:CDS |
| ATGAATTTGCAGGTGCATCA+TGG | 0.601724 | 1.1:+70939172 | MS.gene88921:intron |
| ACATCTTGCTGAAGCCCTTG+GGG | 0.602070 | 1.1:+70936312 | MS.gene88921:CDS |
| ATACTTGTGGTTGGAACTAG+AGG | 0.603603 | 1.1:+70934002 | MS.gene88921:CDS |
| TGCCTGAAGTCTCTTCGCAA+TGG | 0.604421 | 1.1:-70934045 | None:intergenic |
| TAACCAAAGAAAGCAGCTGA+AGG | 0.605409 | 1.1:+70935797 | MS.gene88921:CDS |
| TTGTGGATCTACTGATATGG+TGG | 0.606875 | 1.1:+70936800 | MS.gene88921:CDS |
| TGAGGAAACAGCCAATCATG+AGG | 0.607103 | 1.1:-70939024 | None:intergenic |
| AATCCAAAATATAAAGGAGG+CGG | 0.607992 | 1.1:-70937486 | None:intergenic |
| GGGTGGGGAAATGCATATGT+TGG | 0.608825 | 1.1:-70936618 | None:intergenic |
| TCCATCTCATTTGGAAGACG+CGG | 0.609951 | 1.1:+70939760 | MS.gene88921:CDS |
| GATCAATGACAGAAAAGAGA+GGG | 0.613379 | 1.1:+70933562 | MS.gene88921:CDS |
| ATAATAGCCTGAGCTGTGAA+GGG | 0.613818 | 1.1:-70935876 | None:intergenic |
| ACCACTCAAGAGGACTTAAG+TGG | 0.616350 | 1.1:-70939784 | None:intergenic |
| AAGTTGATTGAGAGTGAAGA+TGG | 0.624389 | 1.1:+70939677 | MS.gene88921:CDS |
| AATATTGGACAGACTGTCAG+AGG | 0.625882 | 1.1:+70933602 | MS.gene88921:CDS |
| AGATGTGAATAGGCACCCCA+AGG | 0.626183 | 1.1:-70936327 | None:intergenic |
| GTTACTTCTTTGCCACACAA+AGG | 0.626419 | 1.1:+70932423 | MS.gene88921:CDS |
| TGTGGATCTACTGATATGGT+GGG | 0.628477 | 1.1:+70936801 | MS.gene88921:CDS |
| ATCGCTCACCATATGCGGGA+GGG | 0.629191 | 1.1:-70935905 | None:intergenic |
| TCATGGTGGAGCGGGAACCA+CGG | 0.634029 | 1.1:+70939189 | MS.gene88921:CDS |
| GGACTCCACATATAGGCAGT+TGG | 0.634912 | 1.1:-70936919 | None:intergenic |
| GACAAGTTGGTTAGTGTGAG+AGG | 0.638101 | 1.1:+70932327 | MS.gene88921:CDS |
| CTAACCACAGCAGAACATTG+AGG | 0.638399 | 1.1:-70939042 | None:intergenic |
| AATCGCTCACCATATGCGGG+AGG | 0.638860 | 1.1:-70935906 | None:intergenic |
| AAAATTCATGCTCCAGCCAG+AGG | 0.640385 | 1.1:+70939542 | MS.gene88921:CDS |
| GCAGGTGCATCATGGTGGAG+CGG | 0.640647 | 1.1:+70939180 | MS.gene88921:intron |
| TGAGTCAAACTATCAACCAC+GGG | 0.640938 | 1.1:+70937434 | MS.gene88921:CDS |
| GCATACTTCAGCATGTATCG+TGG | 0.647313 | 1.1:+70936880 | MS.gene88921:CDS |
| GTAAATTTCTATCCTCTGGG+TGG | 0.653398 | 1.1:+70934826 | MS.gene88921:CDS |
| GAGGAAACAGCCAATCATGA+GGG | 0.653655 | 1.1:-70939023 | None:intergenic |
| CGCTAAAAGAGACAGAACAA+CGG | 0.655809 | 1.1:+70938423 | MS.gene88921:CDS |
| GTTCACCTTCATCTAAGGAG+AGG | 0.656058 | 1.1:+70932382 | MS.gene88921:CDS |
| AGTATGACAATTTGTAACCG+TGG | 0.656264 | 1.1:-70933984 | None:intergenic |
| CATCTTGTTCCGAAACCAAG+TGG | 0.657325 | 1.1:+70936943 | MS.gene88921:CDS |
| AAAATCTACACACCACCACA+AGG | 0.658594 | 1.1:-70939839 | None:intergenic |
| AGATCAATGACAGAAAAGAG+AGG | 0.660701 | 1.1:+70933561 | MS.gene88921:CDS |
| TTACATCCTGCCAATACTCG+AGG | 0.661630 | 1.1:-70934853 | None:intergenic |
| GATGTGAATAGGCACCCCAA+GGG | 0.663373 | 1.1:-70936326 | None:intergenic |
| AATGAGCACAAACCTTTGTG+TGG | 0.663563 | 1.1:-70932435 | None:intergenic |
| CCAAATCCAAAATATAAAGG+AGG | 0.663826 | 1.1:-70937489 | None:intergenic |
| CATTGGAGAAAATCCTCCCG+TGG | 0.667741 | 1.1:-70937450 | None:intergenic |
| ATGAGTCAAACTATCAACCA+CGG | 0.669416 | 1.1:+70937433 | MS.gene88921:CDS |
| TCACCTTCATCTAAGGAGAG+GGG | 0.681765 | 1.1:+70932384 | MS.gene88921:CDS |
| GGCTACAGGATTAAAATCTG+GGG | 0.686247 | 1.1:+70939210 | MS.gene88921:CDS |
| ATTATGTCTCAAGAAGATGA+CGG | 0.700952 | 1.1:+70932360 | MS.gene88921:CDS |
| GTCAAACTATCAACCACGGG+AGG | 0.710066 | 1.1:+70937437 | MS.gene88921:CDS |
| AATTTGCAGGTGCATCATGG+TGG | 0.732739 | 1.1:+70939175 | MS.gene88921:intron |
| CAACGGGGAATTATCGACCG+AGG | 0.734586 | 1.1:+70938440 | MS.gene88921:CDS |
| ACTCGAGGATCACCACCCAG+AGG | 0.762040 | 1.1:-70934838 | None:intergenic |
| GTGGATCTACTGATATGGTG+GGG | 0.771351 | 1.1:+70936802 | MS.gene88921:CDS |
| CTAAAAGAGACAGAACAACG+GGG | 0.829050 | 1.1:+70938425 | MS.gene88921:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 70932318 | 70939856 | 70932318 | ID=MS.gene88921 |
| chr1.1 | mRNA | 70932318 | 70939856 | 70932318 | ID=MS.gene88921.t1;Parent=MS.gene88921 |
| chr1.1 | exon | 70932318 | 70932444 | 70932318 | ID=MS.gene88921.t1.exon1;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70932318 | 70932444 | 70932318 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70933484 | 70933632 | 70933484 | ID=MS.gene88921.t1.exon2;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70933484 | 70933632 | 70933484 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70933822 | 70934064 | 70933822 | ID=MS.gene88921.t1.exon3;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70933822 | 70934064 | 70933822 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70934760 | 70934871 | 70934760 | ID=MS.gene88921.t1.exon4;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70934760 | 70934871 | 70934760 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70935748 | 70935918 | 70935748 | ID=MS.gene88921.t1.exon5;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70935748 | 70935918 | 70935748 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70936305 | 70936368 | 70936305 | ID=MS.gene88921.t1.exon6;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70936305 | 70936368 | 70936305 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70936617 | 70936674 | 70936617 | ID=MS.gene88921.t1.exon7;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70936617 | 70936674 | 70936617 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70936787 | 70936964 | 70936787 | ID=MS.gene88921.t1.exon8;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70936787 | 70936964 | 70936787 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70937388 | 70937518 | 70937388 | ID=MS.gene88921.t1.exon9;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70937388 | 70937518 | 70937388 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70938380 | 70938482 | 70938380 | ID=MS.gene88921.t1.exon10;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70938380 | 70938482 | 70938380 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70938983 | 70939059 | 70938983 | ID=MS.gene88921.t1.exon11;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70938983 | 70939059 | 70938983 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70939184 | 70939231 | 70939184 | ID=MS.gene88921.t1.exon12;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70939184 | 70939231 | 70939184 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70939414 | 70939563 | 70939414 | ID=MS.gene88921.t1.exon13;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70939414 | 70939563 | 70939414 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| chr1.1 | exon | 70939650 | 70939856 | 70939650 | ID=MS.gene88921.t1.exon14;Parent=MS.gene88921.t1 |
| chr1.1 | CDS | 70939650 | 70939856 | 70939650 | ID=cds.MS.gene88921.t1;Parent=MS.gene88921.t1 |
| Gene Sequence |
| Protein sequence |
