Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88928.t1 | XP_024631230.1 | 97.2 | 468 | 13 | 0 | 36 | 503 | 6 | 473 | 1.10E-261 | 912.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88928.t1 | Q9SRE5 | 58.7 | 463 | 140 | 9 | 44 | 501 | 8 | 424 | 2.5e-129 | 463.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88928.t1 | A0A396JLZ8 | 97.2 | 468 | 13 | 0 | 36 | 503 | 6 | 473 | 8.0e-262 | 912.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056618 | MS.gene88928 | 0.80712 | 5.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88928.t1 | MTR_1g026560 | 95.041 | 484 | 21 | 2 | 20 | 503 | 4 | 484 | 0.0 | 946 |
| MS.gene88928.t1 | MTR_6g045493 | 46.296 | 216 | 104 | 4 | 41 | 249 | 30 | 240 | 3.19e-39 | 149 |
| MS.gene88928.t1 | MTR_8g098495 | 44.889 | 225 | 109 | 6 | 23 | 238 | 19 | 237 | 2.11e-38 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88928.t1 | AT1G76660 | 59.179 | 463 | 138 | 10 | 44 | 501 | 8 | 424 | 6.81e-170 | 486 |
| MS.gene88928.t1 | AT1G76660 | 54.545 | 363 | 117 | 7 | 141 | 501 | 1 | 317 | 2.84e-116 | 345 |
| MS.gene88928.t1 | AT5G52430 | 42.041 | 245 | 120 | 9 | 23 | 251 | 11 | 249 | 2.55e-34 | 134 |
| MS.gene88928.t1 | AT1G63720 | 35.849 | 265 | 151 | 6 | 44 | 304 | 37 | 286 | 3.13e-31 | 124 |
| MS.gene88928.t1 | AT4G25620 | 40.083 | 242 | 114 | 10 | 23 | 251 | 11 | 234 | 2.65e-24 | 105 |
Find 0 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATTTAAGGATAAAAT+TGG | - | 6098:80621-80640 | None:intergenic | 15.0% |
| !! | TTAAAATTTGATGAGAAATT+GGG | - | 6098:78204-78223 | None:intergenic | 15.0% |
| !!! | ATGTTTTATGGAAATTAAAT+AGG | + | 6098:77836-77855 | MS.gene88928:intron | 15.0% |
| !!! | ATTTTTTTTTTTTGAAAGAG+AGG | - | 6098:80549-80568 | None:intergenic | 15.0% |
| !!! | TGAAATTTTAAGCTTTTTTA+GGG | - | 6098:78982-79001 | None:intergenic | 15.0% |
| !!! | TTTAAAATTTGATGAGAAAT+TGG | - | 6098:78205-78224 | None:intergenic | 15.0% |
| !!! | TTTTATTGTTATAACATGTT+AGG | - | 6098:78291-78310 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGAAAGAGA+GGG | - | 6098:80548-80567 | None:intergenic | 15.0% |
| !! | AATCGAAAATGTTAAATAGA+AGG | - | 6098:77616-77635 | None:intergenic | 20.0% |
| !! | AGAAAGATTGTATAAGTATT+AGG | - | 6098:78698-78717 | None:intergenic | 20.0% |
| !! | AGTAAGTGATTAACATAATA+TGG | + | 6098:77504-77523 | MS.gene88928:intron | 20.0% |
| !! | ATAATACTAACATAAACAAG+AGG | + | 6098:77670-77689 | MS.gene88928:intron | 20.0% |
| !! | GAAGATATATTCTCAAAAAT+GGG | + | 6098:80734-80753 | MS.gene88928:CDS | 20.0% |
| !! | TATTACAAAATTAAATGACC+TGG | - | 6098:78599-78618 | None:intergenic | 20.0% |
| !! | TGAAGATATATTCTCAAAAA+TGG | + | 6098:80733-80752 | MS.gene88928:CDS | 20.0% |
| !!! | CTGAAATTTTAAGCTTTTTT+AGG | - | 6098:78983-79002 | None:intergenic | 20.0% |
| !!! | TATGTTGTAGTTACTTTTAA+TGG | + | 6098:80488-80507 | MS.gene88928:intron | 20.0% |
| !!! | TCTATTTAACATTTTCGATT+TGG | + | 6098:77616-77635 | MS.gene88928:intron | 20.0% |
| !!! | TTTCTCATCAAATTTTAAAC+TGG | + | 6098:78206-78225 | MS.gene88928:intron | 20.0% |
| ! | AAGAAAATCTTCAGTCAAAT+TGG | + | 6098:78517-78536 | MS.gene88928:intron | 25.0% |
| ! | AATGTTAAATAGAAGGAATC+TGG | - | 6098:77609-77628 | None:intergenic | 25.0% |
| ! | ATAAACAAGAAAAGCAAAAG+AGG | - | 6098:77760-77779 | None:intergenic | 25.0% |
| ! | ATTAAGTGTTTCAAAAGACT+CGG | + | 6098:79924-79943 | MS.gene88928:CDS | 25.0% |
| ! | CAGACTTATTCAATTAGATT+TGG | - | 6098:78040-78059 | None:intergenic | 25.0% |
| ! | GATAATGACAAAAAACAACT+TGG | - | 6098:79355-79374 | None:intergenic | 25.0% |
| ! | GCAAGAAAGAAACATATTTA+AGG | - | 6098:80631-80650 | None:intergenic | 25.0% |
| ! | TATAAGTATTAGGAAGTCAA+CGG | - | 6098:78688-78707 | None:intergenic | 25.0% |
| ! | TATACTATATCCCAACATAA+TGG | - | 6098:78253-78272 | None:intergenic | 25.0% |
| ! | TATTAACTGTTCCAAACATA+TGG | - | 6098:78905-78924 | None:intergenic | 25.0% |
| ! | TATTACATCTTGAGAAATTG+TGG | + | 6098:80334-80353 | MS.gene88928:intron | 25.0% |
| ! | TTGAAGAGATTAATATGTGT+AGG | - | 6098:78756-78775 | None:intergenic | 25.0% |
| ! | TTGAATTCTTTCATCAATGA+AGG | - | 6098:80168-80187 | None:intergenic | 25.0% |
| ! | TTTCTCATGATACATTTGAA+AGG | - | 6098:78158-78177 | None:intergenic | 25.0% |
| !! | ATATGTTTGGAACAGTTAAT+AGG | + | 6098:78904-78923 | MS.gene88928:intron | 25.0% |
| !! | ATGATACATTTGAAAGGTTT+TGG | - | 6098:78152-78171 | None:intergenic | 25.0% |
| !! | TACAATCTTTCTCTTTTCTT+CGG | + | 6098:78706-78725 | MS.gene88928:intron | 25.0% |
| !! | TTTGTAAATCTAAAACTCCA+AGG | - | 6098:78437-78456 | None:intergenic | 25.0% |
| !!! | AACAATGCTTTTTATCTACT+AGG | - | 6098:78333-78352 | None:intergenic | 25.0% |
| !!! | AATGAGATATTTTTGCTAAC+TGG | - | 6098:77947-77966 | None:intergenic | 25.0% |
| !!! | AATGCTTTTTATTCTCAACA+AGG | - | 6098:78077-78096 | None:intergenic | 25.0% |
| AAAGTAACTACAACATACCA+AGG | - | 6098:80485-80504 | None:intergenic | 30.0% | |
| AATCAAATTCCTGTATGTGA+TGG | + | 6098:80267-80286 | MS.gene88928:CDS | 30.0% | |
| AATCTGCAGGAAATATCAAA+TGG | + | 6098:80766-80785 | MS.gene88928:CDS | 30.0% | |
| AATCTGGAAAAGAGTAAGTT+GGG | - | 6098:77593-77612 | None:intergenic | 30.0% | |
| AGGAGAGTAAATTAAGAACT+GGG | + | 6098:78479-78498 | MS.gene88928:intron | 30.0% | |
| ATCTGCAGGAAATATCAAAT+GGG | + | 6098:80767-80786 | MS.gene88928:CDS | 30.0% | |
| CATGTTAGGATATAGTGTAA+TGG | - | 6098:78277-78296 | None:intergenic | 30.0% | |
| CATTGACAGAGAAAAAAATG+GGG | + | 6098:79106-79125 | MS.gene88928:intron | 30.0% | |
| CATTTCTCCCAGAAATATAT+TGG | + | 6098:77963-77982 | MS.gene88928:intron | 30.0% | |
| CTGAAAATGGAAAATATCAG+AGG | + | 6098:79764-79783 | MS.gene88928:CDS | 30.0% | |
| GAAAACTGTTCCATTATGTT+GGG | + | 6098:78240-78259 | MS.gene88928:intron | 30.0% | |
| GACAGGATATTATATGGTAA+TGG | - | 6098:78121-78140 | None:intergenic | 30.0% | |
| GGAAAAGACAGGATATTATA+TGG | - | 6098:78127-78146 | None:intergenic | 30.0% | |
| TACCTATGCACAATTCTATT+TGG | + | 6098:79867-79886 | MS.gene88928:CDS | 30.0% | |
| TAGGAGAGTAAATTAAGAAC+TGG | + | 6098:78478-78497 | MS.gene88928:intron | 30.0% | |
| TCCTTGATATTGGAGATATA+AGG | - | 6098:79672-79691 | None:intergenic | 30.0% | |
| TCTCGTATTCCTGATAATAA+TGG | + | 6098:79193-79212 | MS.gene88928:CDS | 30.0% | |
| TGGAAGTTTATTCTCAATTC+CGG | - | 6098:78101-78120 | None:intergenic | 30.0% | |
| TTAAATGAAAGACTTTGCCT+TGG | + | 6098:78417-78436 | MS.gene88928:intron | 30.0% | |
| TTCCATAAAACATTCAATCC+AGG | - | 6098:77829-77848 | None:intergenic | 30.0% | |
| TTTGTCGCCAATATATTTCT+GGG | - | 6098:77973-77992 | None:intergenic | 30.0% | |
| ! | ACAATCTTTCTCTTTTCTTC+GGG | + | 6098:78707-78726 | MS.gene88928:intron | 30.0% |
| ! | ATGAAGGTATGCTGTAAAAA+CGG | + | 6098:80292-80311 | MS.gene88928:intron | 30.0% |
| ! | CTCTGATATTTTCCATTTTC+AGG | - | 6098:79766-79785 | None:intergenic | 30.0% |
| ! | GAAGTATTTAGCCATATGTT+TGG | + | 6098:78891-78910 | MS.gene88928:intron | 30.0% |
| ! | GCATTGACAGAGAAAAAAAT+GGG | + | 6098:79105-79124 | MS.gene88928:intron | 30.0% |
| ! | TACCTGGATTGAATGTTTTA+TGG | + | 6098:77824-77843 | MS.gene88928:intron | 30.0% |
| ! | TGCATTGACAGAGAAAAAAA+TGG | + | 6098:79104-79123 | MS.gene88928:intron | 30.0% |
| ! | TTTTCGTAGAAAATTGCATG+TGG | + | 6098:78779-78798 | MS.gene88928:intron | 30.0% |
| ! | TTTTGTCGCCAATATATTTC+TGG | - | 6098:77974-77993 | None:intergenic | 30.0% |
| !! | TACATTTGAAAGGTTTTGGT+TGG | - | 6098:78148-78167 | None:intergenic | 30.0% |
| !! | TTGAGAATAAAAAGCATTGC+CGG | + | 6098:78079-78098 | MS.gene88928:intron | 30.0% |
| !!! | GTGTTTTAGGATCTAAGTTT+TGG | - | 6098:78806-78825 | None:intergenic | 30.0% |
| !!! | TTAACATTTTCGATTTGGCA+AGG | + | 6098:77621-77640 | MS.gene88928:intron | 30.0% |
| AAAAAAATGGGGAGGTTGTT+TGG | + | 6098:79117-79136 | MS.gene88928:CDS | 35.0% | |
| AAAAAATGGGGAGGTTGTTT+GGG | + | 6098:79118-79137 | MS.gene88928:CDS | 35.0% | |
| AAATCTCAAAAATGGTGGCA+AGG | + | 6098:79579-79598 | MS.gene88928:CDS | 35.0% | |
| AAATTGGTCCATGTAGGTTA+AGG | + | 6098:78533-78552 | MS.gene88928:intron | 35.0% | |
| AAGCAACGAACGGTTATTTA+TGG | - | 6098:77415-77434 | None:intergenic | 35.0% | |
| AATCTCAAAAATGGTGGCAA+GGG | + | 6098:79580-79599 | MS.gene88928:CDS | 35.0% | |
| AATGGAAAATATCAGAGGAC+TGG | + | 6098:79769-79788 | MS.gene88928:CDS | 35.0% | |
| AATTGGTCCATGTAGGTTAA+GGG | + | 6098:78534-78553 | MS.gene88928:intron | 35.0% | |
| ACCTGATAATCATACTCTCA+TGG | + | 6098:80706-80725 | MS.gene88928:CDS | 35.0% | |
| AGAGTAAATTAAGAACTGGG+GGG | + | 6098:78482-78501 | MS.gene88928:intron | 35.0% | |
| ATGGAAAATATCAGAGGACT+GGG | + | 6098:79770-79789 | MS.gene88928:CDS | 35.0% | |
| ATGTCAGATCATAAATCACC+GGG | + | 6098:80653-80672 | MS.gene88928:intron | 35.0% | |
| ATTTCTTCCACATCTTGCTT+AGG | - | 6098:80000-80019 | None:intergenic | 35.0% | |
| CATGTCAGATCATAAATCAC+CGG | + | 6098:80652-80671 | MS.gene88928:intron | 35.0% | |
| CGACACTAATGATGTTACTA+TGG | + | 6098:79813-79832 | MS.gene88928:CDS | 35.0% | |
| GAATCTGGAAAAGAGTAAGT+TGG | - | 6098:77594-77613 | None:intergenic | 35.0% | |
| GAGAGTAAATTAAGAACTGG+GGG | + | 6098:78481-78500 | MS.gene88928:intron | 35.0% | |
| GATGTTAGAAAGTGAGCAAA+AGG | - | 6098:79553-79572 | None:intergenic | 35.0% | |
| GCCTTATATCTCCAATATCA+AGG | + | 6098:79668-79687 | MS.gene88928:CDS | 35.0% | |
| GGAAAACTGTTCCATTATGT+TGG | + | 6098:78239-78258 | MS.gene88928:intron | 35.0% | |
| GGAGAGTAAATTAAGAACTG+GGG | + | 6098:78480-78499 | MS.gene88928:intron | 35.0% | |
| GTAGTGAAATTTGAGAAGAC+TGG | - | 6098:79457-79476 | None:intergenic | 35.0% | |
| GTCCAAATAGAATTGTGCAT+AGG | - | 6098:79872-79891 | None:intergenic | 35.0% | |
| TACAAATGTCAAGAAGCTGA+TGG | + | 6098:78451-78470 | MS.gene88928:intron | 35.0% | |
| TAGGTAGAAAGATGTTTGAG+AGG | + | 6098:78923-78942 | MS.gene88928:intron | 35.0% | |
| TATTGGAGATATAAGGCTAC+TGG | - | 6098:79665-79684 | None:intergenic | 35.0% | |
| TCAGCAAATCTCAAAAATGG+TGG | + | 6098:79574-79593 | MS.gene88928:CDS | 35.0% | |
| TCAGTGTAATTCTTAGTACC+TGG | + | 6098:77808-77827 | MS.gene88928:intron | 35.0% | |
| TCATCACTGTATCCTGAAAA+TGG | + | 6098:79751-79770 | MS.gene88928:CDS | 35.0% | |
| TCCTCAGCAAATCTCAAAAA+TGG | + | 6098:79571-79590 | MS.gene88928:CDS | 35.0% | |
| TCTGCAGGAAATATCAAATG+GGG | + | 6098:80768-80787 | MS.gene88928:CDS | 35.0% | |
| TGAGATCTGAGCAAAATTAG+TGG | - | 6098:77352-77371 | None:intergenic | 35.0% | |
| TGGAAGAAATAGAAGCTTAC+CGG | + | 6098:80010-80029 | MS.gene88928:CDS | 35.0% | |
| TGGTTATGTAGTAACTAGAG+AGG | - | 6098:77332-77351 | None:intergenic | 35.0% | |
| TGTCAATGCAAGTCAAGAAA+GGG | - | 6098:79094-79113 | None:intergenic | 35.0% | |
| TGTTGTAACGTGACTGAAAA+CGG | - | 6098:77696-77715 | None:intergenic | 35.0% | |
| TTAATCTGCCACCATTATGA+GGG | - | 6098:79909-79928 | None:intergenic | 35.0% | |
| TTCATCCAATGAAGATTCGA+CGG | + | 6098:78649-78668 | MS.gene88928:intron | 35.0% | |
| TTGAAAATCACGAGACAGTA+TGG | - | 6098:77541-77560 | None:intergenic | 35.0% | |
| TTGATATTTCCTGCAGATTC+TGG | - | 6098:80765-80784 | None:intergenic | 35.0% | |
| ! | AAAGCTACTCACTGTGTTTT+AGG | - | 6098:78819-78838 | None:intergenic | 35.0% |
| ! | ACAGTGAGTAGCTTTTATCT+TGG | + | 6098:78824-78843 | MS.gene88928:intron | 35.0% |
| ! | TCCATGAGAGTATGATTATC+AGG | - | 6098:80710-80729 | None:intergenic | 35.0% |
| ! | TCTTGTTTCAGTTCACAGAA+AGG | + | 6098:79148-79167 | MS.gene88928:CDS | 35.0% |
| ! | TTTGAAGTTGCTCTTCTCTA+TGG | - | 6098:80409-80428 | None:intergenic | 35.0% |
| ! | TTTTAAACTGGTTGTTCCAC+AGG | + | 6098:78218-78237 | MS.gene88928:intron | 35.0% |
| !! | AATGGAGCACTGTATTAGTT+GGG | + | 6098:77912-77931 | MS.gene88928:intron | 35.0% |
| !! | ATAATGGAACAGTTTTCCTG+TGG | - | 6098:78237-78256 | None:intergenic | 35.0% |
| !!! | ACCATTTTTGAGATTTGCTG+AGG | - | 6098:79575-79594 | None:intergenic | 35.0% |
| AACTCAACCCTTAACCTACA+TGG | - | 6098:78544-78563 | None:intergenic | 40.0% | |
| AATCACGAGACAGTATGGTA+TGG | - | 6098:77536-77555 | None:intergenic | 40.0% | |
| AATCCTCCATTCCCTCATAA+TGG | + | 6098:79895-79914 | MS.gene88928:CDS | 40.0% | |
| AGAAATTTCTCCAACGTGAG+AGG | + | 6098:78173-78192 | MS.gene88928:intron | 40.0% | |
| AGAAGCTTGCGAGAAAGAAA+GGG | + | 6098:80830-80849 | MS.gene88928:CDS | 40.0% | |
| AGAATTGTGCATAGGTAGCA+GGG | - | 6098:79864-79883 | None:intergenic | 40.0% | |
| AGCTGTGTTTCATGAGCATA+TGG | - | 6098:79424-79443 | None:intergenic | 40.0% | |
| ATATGCTCATGAAACACAGC+TGG | + | 6098:79423-79442 | MS.gene88928:CDS | 40.0% | |
| ATGCAGAGGTTGACTATAGA+AGG | + | 6098:80804-80823 | MS.gene88928:CDS | 40.0% | |
| ATTCAAAGCTCATGAGACTC+AGG | + | 6098:80182-80201 | MS.gene88928:CDS | 40.0% | |
| CATAGTATCAGCGGAACAAT+AGG | + | 6098:77870-77889 | MS.gene88928:intron | 40.0% | |
| CATCTCAATAACTAGAGCCT+TGG | + | 6098:80465-80484 | MS.gene88928:intron | 40.0% | |
| CATGCTTTGCATAGTATCAG+CGG | + | 6098:77861-77880 | MS.gene88928:intron | 40.0% | |
| CCAAAGTAGAAAGCAACGAA+CGG | - | 6098:77425-77444 | None:intergenic | 40.0% | |
| CCTTCATATCCATCACATAC+AGG | - | 6098:80279-80298 | None:intergenic | 40.0% | |
| CGTGGAGATTTCTGATGTAA+TGG | + | 6098:80080-80099 | MS.gene88928:CDS | 40.0% | |
| CTGGCTGATCCATTATTATC+AGG | - | 6098:79205-79224 | None:intergenic | 40.0% | |
| CTGTCAATGCAAGTCAAGAA+AGG | - | 6098:79095-79114 | None:intergenic | 40.0% | |
| CTTAATCTGCCACCATTATG+AGG | - | 6098:79910-79929 | None:intergenic | 40.0% | |
| GAAATTTCTCCAACGTGAGA+GGG | + | 6098:78174-78193 | MS.gene88928:intron | 40.0% | |
| GGAAGAAATAGAAGCTTACC+GGG | + | 6098:80011-80030 | MS.gene88928:CDS | 40.0% | |
| GTCGCATACATCGTATTTGA+AGG | - | 6098:79397-79416 | None:intergenic | 40.0% | |
| GTGAAATTTGAGAAGACTGG+AGG | - | 6098:79454-79473 | None:intergenic | 40.0% | |
| GTTTCAGTTCACAGAAAGGT+GGG | + | 6098:79152-79171 | MS.gene88928:CDS | 40.0% | |
| TAGAAGTCCTAAGCAAGATG+TGG | + | 6098:79990-80009 | MS.gene88928:CDS | 40.0% | |
| TAGAATTGTGCATAGGTAGC+AGG | - | 6098:79865-79884 | None:intergenic | 40.0% | |
| TATAACCACCAGTCAATACG+TGG | + | 6098:80062-80081 | MS.gene88928:CDS | 40.0% | |
| TCAAATACGATGTATGCGAC+TGG | + | 6098:79397-79416 | MS.gene88928:CDS | 40.0% | |
| TCACCAGAGTTCCTTGATAT+TGG | - | 6098:79682-79701 | None:intergenic | 40.0% | |
| TCAGTCAAATTGGTCCATGT+AGG | + | 6098:78527-78546 | MS.gene88928:intron | 40.0% | |
| TCATCCAATGAAGATTCGAC+GGG | + | 6098:78650-78669 | MS.gene88928:intron | 40.0% | |
| TCATTATCTGCAAACTCACC+TGG | + | 6098:79367-79386 | MS.gene88928:CDS | 40.0% | |
| TCTATAGTCAACCTCTGCAT+CGG | - | 6098:80804-80823 | None:intergenic | 40.0% | |
| TCTCCAATATCAAGGAACTC+TGG | + | 6098:79676-79695 | MS.gene88928:CDS | 40.0% | |
| TCTTGCTTAGGACTTCTAGA+AGG | - | 6098:79988-80007 | None:intergenic | 40.0% | |
| TGACAGAGAAAAAAATGGGG+AGG | + | 6098:79109-79128 | MS.gene88928:intron | 40.0% | |
| TGATGTTACTATGGCATCAC+AGG | + | 6098:79822-79841 | MS.gene88928:CDS | 40.0% | |
| TGCAGAGGTTGACTATAGAA+GGG | + | 6098:80805-80824 | MS.gene88928:CDS | 40.0% | |
| TGTTTCAGTTCACAGAAAGG+TGG | + | 6098:79151-79170 | MS.gene88928:CDS | 40.0% | |
| TTATCAGGAATACGAGATGC+AGG | - | 6098:79190-79209 | None:intergenic | 40.0% | |
| TTGTTAAGTGAGCCAACTCT+GGG | - | 6098:79510-79529 | None:intergenic | 40.0% | |
| ! | AAGTGAGCAAAAGGTACATC+TGG | - | 6098:79544-79563 | None:intergenic | 40.0% |
| ! | AGAAATCTCCACGTATTGAC+TGG | - | 6098:80073-80092 | None:intergenic | 40.0% |
| ! | AGTGAGCAAAAGGTACATCT+GGG | - | 6098:79543-79562 | None:intergenic | 40.0% |
| ! | TATGAGGGAATGGAGGATTT+TGG | - | 6098:79894-79913 | None:intergenic | 40.0% |
| !! | AAGTGTTGATATGTACCCCA+AGG | - | 6098:78005-78024 | None:intergenic | 40.0% |
| !! | ATTGATTTGCCAGAGGTCAA+GGG | - | 6098:80126-80145 | None:intergenic | 40.0% |
| !! | CCTGTATGTGATGGATATGA+AGG | + | 6098:80276-80295 | MS.gene88928:CDS | 40.0% |
| !! | CTTTTCTTCGGGTTTGTGAT+TGG | + | 6098:78718-78737 | MS.gene88928:intron | 40.0% |
| !! | GAATGGAGCACTGTATTAGT+TGG | + | 6098:77911-77930 | MS.gene88928:intron | 40.0% |
| !! | TTCCATCATTGATTTGCCAG+AGG | - | 6098:80133-80152 | None:intergenic | 40.0% |
| !! | TTTCGATTTGGCAAGGTTGA+CGG | + | 6098:77628-77647 | MS.gene88928:intron | 40.0% |
| !!! | AGGTTTTGGTTGGAAAAGAC+AGG | - | 6098:78138-78157 | None:intergenic | 40.0% |
| AAAGCTCATGAGACTCAGGT+GGG | + | 6098:80186-80205 | MS.gene88928:CDS | 45.0% | |
| AAATATCAGAGGACTGGGTC+TGG | + | 6098:79775-79794 | MS.gene88928:CDS | 45.0% | |
| AATATCAGAGGACTGGGTCT+GGG | + | 6098:79776-79795 | MS.gene88928:CDS | 45.0% | |
| ACAGTGATGAATCCCACTGT+GGG | - | 6098:79741-79760 | None:intergenic | 45.0% | |
| ACTACATATTCGCTCTACCC+TGG | + | 6098:79631-79650 | MS.gene88928:CDS | 45.0% | |
| AGACTCGGATGCTCAATCTA+CGG | + | 6098:79939-79958 | MS.gene88928:CDS | 45.0% | |
| AGCTATGCCTGTGACTTGAT+TGG | - | 6098:79260-79279 | None:intergenic | 45.0% | |
| AGGAAGGGCAGAATGTGTAA+AGG | - | 6098:79317-79336 | None:intergenic | 45.0% | |
| CAGAAGCTTGCGAGAAAGAA+AGG | + | 6098:80829-80848 | MS.gene88928:CDS | 45.0% | |
| CATCCAATGAAGATTCGACG+GGG | + | 6098:78651-78670 | MS.gene88928:intron | 45.0% | |
| CGACAAAACAAACCAGCCTT+GGG | + | 6098:77986-78005 | MS.gene88928:intron | 45.0% | |
| CTCATCTGCACTGAAACCAA+AGG | - | 6098:80040-80059 | None:intergenic | 45.0% | |
| CTTGGCATGACTAGTAGATG+CGG | + | 6098:78842-78861 | MS.gene88928:intron | 45.0% | |
| GACAAAACAAACCAGCCTTG+GGG | + | 6098:77987-78006 | MS.gene88928:intron | 45.0% | |
| GACCTCTGGCAAATCAATGA+TGG | + | 6098:80128-80147 | MS.gene88928:CDS | 45.0% | |
| GAGCTGTTGCTACAATATCC+CGG | - | 6098:80674-80693 | None:intergenic | 45.0% | |
| GATCAGCCAGTCAACCAAAT+GGG | + | 6098:79215-79234 | MS.gene88928:CDS | 45.0% | |
| GCAGAATGTGTAAAGGATGC+TGG | - | 6098:79310-79329 | None:intergenic | 45.0% | |
| GCAGAGGTTGACTATAGAAG+GGG | + | 6098:80806-80825 | MS.gene88928:CDS | 45.0% | |
| GGATATTGTAGCAACAGCTC+TGG | + | 6098:80674-80693 | MS.gene88928:CDS | 45.0% | |
| GTAAAGGATGCTGGTGAAGA+AGG | - | 6098:79301-79320 | None:intergenic | 45.0% | |
| GTGGAAATGGACATCAGAGT+AGG | + | 6098:79962-79981 | MS.gene88928:CDS | 45.0% | |
| GTTGTTAAGTGAGCCAACTC+TGG | - | 6098:79511-79530 | None:intergenic | 45.0% | |
| TACAGTGATGAATCCCACTG+TGG | - | 6098:79742-79761 | None:intergenic | 45.0% | |
| TGACTGTGCAGTTGAAGGAA+GGG | - | 6098:79332-79351 | None:intergenic | 45.0% | |
| TGTTAAGTGAGCCAACTCTG+GGG | - | 6098:79509-79528 | None:intergenic | 45.0% | |
| TTATCTGCAAACTCACCTGG+CGG | + | 6098:79370-79389 | MS.gene88928:CDS | 45.0% | |
| TTCTTTGCTTGCTTGCCAAC+TGG | - | 6098:80249-80268 | None:intergenic | 45.0% | |
| ! | AAAAGGTACATCTGGGGAAG+AGG | - | 6098:79536-79555 | None:intergenic | 45.0% |
| ! | AAAGGTACATCTGGGGAAGA+GGG | - | 6098:79535-79554 | None:intergenic | 45.0% |
| ! | AAGAGGCACAATAGATGAGC+AGG | - | 6098:77743-77762 | None:intergenic | 45.0% |
| ! | CCGTTCGTTGCTTTCTACTT+TGG | + | 6098:77422-77441 | MS.gene88928:CDS | 45.0% |
| ! | GTGAGCAAAAGGTACATCTG+GGG | - | 6098:79542-79561 | None:intergenic | 45.0% |
| ! | TCAAGAAGCTGATGGTGACT+AGG | + | 6098:78459-78478 | MS.gene88928:intron | 45.0% |
| !! | AATCTCCACGTATTGACTGG+TGG | - | 6098:80070-80089 | None:intergenic | 45.0% |
| !! | CATTGATTTGCCAGAGGTCA+AGG | - | 6098:80127-80146 | None:intergenic | 45.0% |
| !!! | TTATTTTATAAAAGATAAAA+TGG | - | 6098:80584-80603 | None:intergenic | 5.0% |
| !!! | TTTTATTAATTTTTTTTGAA+TGG | + | 6098:77894-77913 | MS.gene88928:intron | 5.0% |
| AAGGATGCTGGTGAAGAAGG+TGG | - | 6098:79298-79317 | None:intergenic | 50.0% | |
| ACACCCCGTCGAATCTTCAT+TGG | - | 6098:78657-78676 | None:intergenic | 50.0% | |
| ATCGTATTTGAAGGACCGCC+AGG | - | 6098:79388-79407 | None:intergenic | 50.0% | |
| ATTGGTCAACCCAGCCACTT+GGG | - | 6098:79242-79261 | None:intergenic | 50.0% | |
| CAAAGCTCATGAGACTCAGG+TGG | + | 6098:80185-80204 | MS.gene88928:CDS | 50.0% | |
| CAAGCAGTCAAAGAGACACC+AGG | + | 6098:78578-78597 | MS.gene88928:intron | 50.0% | |
| CACTGAAACCAAAGGATGCC+CGG | - | 6098:80032-80051 | None:intergenic | 50.0% | |
| CCACCATTATGAGGGAATGG+AGG | - | 6098:79901-79920 | None:intergenic | 50.0% | |
| CCTCCATTCCCTCATAATGG+TGG | + | 6098:79898-79917 | MS.gene88928:CDS | 50.0% | |
| CTGCCACCATTATGAGGGAA+TGG | - | 6098:79904-79923 | None:intergenic | 50.0% | |
| GAAGGTGGAGCTAAGAGAGA+AGG | - | 6098:79283-79302 | None:intergenic | 50.0% | |
| GACTCGGATGCTCAATCTAC+GGG | + | 6098:79940-79959 | MS.gene88928:CDS | 50.0% | |
| GAGAGGAGCAGTAGATGGTT+CGG | - | 6098:79479-79498 | None:intergenic | 50.0% | |
| GCGACAAAACAAACCAGCCT+TGG | + | 6098:77985-78004 | MS.gene88928:intron | 50.0% | |
| GCTCAATCTACGGGTGGAAA+TGG | + | 6098:79949-79968 | MS.gene88928:CDS | 50.0% | |
| GGAGATATAAGGCTACTGGC+AGG | - | 6098:79661-79680 | None:intergenic | 50.0% | |
| GGATCAGCCAGTCAACCAAA+TGG | + | 6098:79214-79233 | MS.gene88928:CDS | 50.0% | |
| GGGTTGACCAATCAAGTCAC+AGG | + | 6098:79250-79269 | MS.gene88928:CDS | 50.0% | |
| GTGACTGTGCAGTTGAAGGA+AGG | - | 6098:79333-79352 | None:intergenic | 50.0% | |
| GTTAAGTGAGCCAACTCTGG+GGG | - | 6098:79508-79527 | None:intergenic | 50.0% | |
| GTTATCATGCTCCGATGCAG+AGG | + | 6098:80790-80809 | MS.gene88928:CDS | 50.0% | |
| GTTGATATGTACCCCAAGGC+TGG | - | 6098:78001-78020 | None:intergenic | 50.0% | |
| TGGGATCATCCAGAATCTGC+AGG | + | 6098:80753-80772 | MS.gene88928:CDS | 50.0% | |
| TGTCAACCTCTTTCCCTGAG+CGG | + | 6098:79707-79726 | MS.gene88928:CDS | 50.0% | |
| ! | CTTGGTGACTGTGCAGTTGA+AGG | - | 6098:79337-79356 | None:intergenic | 50.0% |
| AAACTCCCGCTCAGGGAAAG+AGG | - | 6098:79716-79735 | None:intergenic | 55.0% | |
| ACCATGATGCCCTTGACCTC+TGG | + | 6098:80114-80133 | MS.gene88928:CDS | 55.0% | |
| CGATTAGACGCGAGTCCAGT+TGG | + | 6098:80231-80250 | MS.gene88928:CDS | 55.0% | |
| CTGGACTCGCGTCTAATCGA+AGG | - | 6098:80230-80249 | None:intergenic | 55.0% | |
| GAAGCTTACCGGGCATCCTT+TGG | + | 6098:80021-80040 | MS.gene88928:CDS | 55.0% | |
| GGAGTGAGAGGAGCAGTAGA+TGG | - | 6098:79484-79503 | None:intergenic | 55.0% | |
| GTCAACCTCTTTCCCTGAGC+GGG | + | 6098:79708-79727 | MS.gene88928:CDS | 55.0% | |
| TCAACCAAATGGGCCCCAAG+TGG | + | 6098:79225-79244 | MS.gene88928:CDS | 55.0% | |
| TCGGATGCTCAATCTACGGG+TGG | + | 6098:79943-79962 | MS.gene88928:CDS | 55.0% | |
| TTGGGGCCCATTTGGTTGAC+TGG | - | 6098:79224-79243 | None:intergenic | 55.0% | |
| TTGGTCAACCCAGCCACTTG+GGG | - | 6098:79241-79260 | None:intergenic | 55.0% | |
| ! | GATTGGTCAACCCAGCCACT+TGG | - | 6098:79243-79262 | None:intergenic | 55.0% |
| ACTGGGTCTGGGAGGGTTTC+TGG | + | 6098:79787-79806 | MS.gene88928:CDS | 60.0% | |
| AGGCTACTGGCAGGACTTCC+AGG | - | 6098:79652-79671 | None:intergenic | 60.0% | |
| ATCAGAGGACTGGGTCTGGG+AGG | + | 6098:79779-79798 | MS.gene88928:CDS | 60.0% | |
| CAAATGGGCCCCAAGTGGCT+GGG | + | 6098:79230-79249 | MS.gene88928:CDS | 60.0% | |
| CTGGGTCTGGGAGGGTTTCT+GGG | + | 6098:79788-79807 | MS.gene88928:CDS | 60.0% | |
| GGCTACTGGCAGGACTTCCA+GGG | - | 6098:79651-79670 | None:intergenic | 60.0% | |
| TCAGAGGACTGGGTCTGGGA+GGG | + | 6098:79780-79799 | MS.gene88928:CDS | 60.0% | |
| TCTCACTCCTCCCCCAGAGT+TGG | + | 6098:79495-79514 | MS.gene88928:CDS | 60.0% | |
| TTGGGTGCACCCTCTCACGT+TGG | - | 6098:78186-78205 | None:intergenic | 60.0% | |
| ! | AACTCTGGGGGAGGAGTGAG+AGG | - | 6098:79496-79515 | None:intergenic | 60.0% |
| ! | AAGTGAGCCAACTCTGGGGG+AGG | - | 6098:79505-79524 | None:intergenic | 60.0% |
| !! | GCCAGAGGTCAAGGGCATCA+TGG | - | 6098:80118-80137 | None:intergenic | 60.0% |
| AGCGGGAGTTTCGCCCACAG+TGG | + | 6098:79725-79744 | MS.gene88928:CDS | 65.0% | |
| CCAAATGGGCCCCAAGTGGC+TGG | + | 6098:79229-79248 | MS.gene88928:CDS | 65.0% | |
| CCAGCCACTTGGGGCCCATT+TGG | - | 6098:79232-79251 | None:intergenic | 65.0% | |
| GCGGGAGTTTCGCCCACAGT+GGG | + | 6098:79726-79745 | MS.gene88928:CDS | 65.0% | |
| GTGGGCGAAACTCCCGCTCA+GGG | - | 6098:79723-79742 | None:intergenic | 65.0% | |
| TGTGGGCGAAACTCCCGCTC+AGG | - | 6098:79724-79743 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 6098 | gene | 77233 | 80859 | 77233 | ID=MS.gene88928 |
| 6098 | mRNA | 77233 | 80859 | 77233 | ID=MS.gene88928.t1;Parent=MS.gene88928 |
| 6098 | exon | 77233 | 77240 | 77233 | ID=MS.gene88928.t1.exon1;Parent=MS.gene88928.t1 |
| 6098 | CDS | 77233 | 77240 | 77233 | ID=cds.MS.gene88928.t1;Parent=MS.gene88928.t1 |
| 6098 | exon | 77323 | 77443 | 77323 | ID=MS.gene88928.t1.exon2;Parent=MS.gene88928.t1 |
| 6098 | CDS | 77323 | 77443 | 77323 | ID=cds.MS.gene88928.t1;Parent=MS.gene88928.t1 |
| 6098 | exon | 79115 | 80297 | 79115 | ID=MS.gene88928.t1.exon3;Parent=MS.gene88928.t1 |
| 6098 | CDS | 79115 | 80297 | 79115 | ID=cds.MS.gene88928.t1;Parent=MS.gene88928.t1 |
| 6098 | exon | 80660 | 80859 | 80660 | ID=MS.gene88928.t1.exon4;Parent=MS.gene88928.t1 |
| 6098 | CDS | 80660 | 80859 | 80660 | ID=cds.MS.gene88928.t1;Parent=MS.gene88928.t1 |
| Gene Sequence |
| Protein sequence |
