Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89094.t1 | XP_003597798.2 | 82.1 | 413 | 70 | 3 | 1 | 412 | 1 | 410 | 1.80E-161 | 578.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89094.t1 | Q5KQI4 | 43.6 | 280 | 146 | 6 | 4 | 280 | 6 | 276 | 3.2e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89094.t1 | G7IMD4 | 82.1 | 413 | 70 | 3 | 1 | 412 | 1 | 410 | 1.3e-161 | 578.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89094.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050959 | MS.gene89094 | 0.802106 | 6.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89094.t1 | MTR_2g102450 | 91.041 | 413 | 33 | 3 | 1 | 412 | 1 | 410 | 0.0 | 719 |
| MS.gene89094.t1 | MTR_2g102450 | 79.177 | 413 | 28 | 5 | 1 | 412 | 1 | 356 | 0.0 | 593 |
| MS.gene89094.t1 | MTR_4g008310 | 77.966 | 177 | 39 | 0 | 55 | 231 | 128 | 304 | 1.46e-85 | 264 |
| MS.gene89094.t1 | MTR_3g101520 | 41.485 | 229 | 128 | 2 | 9 | 237 | 5 | 227 | 6.40e-48 | 163 |
| MS.gene89094.t1 | MTR_3g101520 | 41.921 | 229 | 119 | 4 | 9 | 237 | 5 | 219 | 1.30e-47 | 162 |
| MS.gene89094.t1 | MTR_4g101970 | 33.462 | 260 | 99 | 9 | 184 | 392 | 51 | 287 | 1.75e-21 | 95.5 |
| MS.gene89094.t1 | MTR_1g035460 | 31.447 | 159 | 100 | 4 | 137 | 293 | 192 | 343 | 3.03e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89094.t1 | AT5G58280 | 46.875 | 256 | 104 | 4 | 12 | 240 | 5 | 255 | 7.45e-66 | 213 |
| MS.gene89094.t1 | AT5G58280 | 46.484 | 256 | 106 | 4 | 12 | 240 | 5 | 256 | 8.93e-65 | 210 |
| MS.gene89094.t1 | AT5G58280 | 46.522 | 230 | 111 | 3 | 12 | 240 | 5 | 223 | 4.56e-59 | 194 |
| MS.gene89094.t1 | AT3G19184 | 43.496 | 246 | 125 | 4 | 12 | 255 | 8 | 241 | 1.90e-48 | 166 |
| MS.gene89094.t1 | AT3G19184 | 43.496 | 246 | 125 | 4 | 12 | 255 | 8 | 241 | 2.07e-48 | 166 |
| MS.gene89094.t1 | AT5G42700 | 41.228 | 228 | 117 | 4 | 10 | 234 | 7 | 220 | 1.09e-44 | 155 |
| MS.gene89094.t1 | AT5G42700 | 53.333 | 120 | 55 | 1 | 116 | 234 | 56 | 175 | 2.42e-36 | 131 |
Find 69 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTTCTGTCAATGTTT+TGG | 0.183464 | 2.4:-2613746 | None:intergenic |
| ACAAGATTAGTCATTGATTT+TGG | 0.193878 | 2.4:-2613890 | None:intergenic |
| ATTTGCATTGAAACATAAAT+TGG | 0.234518 | 2.4:+2614911 | MS.gene89094:CDS |
| GGTTGAAGCAGCAAGATTTA+AGG | 0.234558 | 2.4:+2614962 | MS.gene89094:CDS |
| TCGAGGTGTGCATCCTCTTT+TGG | 0.264938 | 2.4:-2616372 | None:intergenic |
| GGCCGCTTCATACTTGTTAC+TGG | 0.280232 | 2.4:-2612871 | None:intergenic |
| ACAAATTTATCATCTGTCTT+TGG | 0.306337 | 2.4:-2614810 | None:intergenic |
| ATACGAAGGAACTGTGTTTC+TGG | 0.317329 | 2.4:-2613939 | None:intergenic |
| ATCAATGACTAATCTTGTTC+TGG | 0.319215 | 2.4:+2613895 | MS.gene89094:CDS |
| TGTATCTGAGAAGATTCTTT+TGG | 0.324472 | 2.4:+2616458 | MS.gene89094:CDS |
| TTAAATCAGAGGAAACTTCT+AGG | 0.340932 | 2.4:+2616289 | MS.gene89094:CDS |
| TCGAAGACTGCAAATTGAAT+TGG | 0.346865 | 2.4:-2614551 | None:intergenic |
| TTCCTCAAGTCTTTGTTCTC+TGG | 0.355734 | 2.4:-2612892 | None:intergenic |
| GGCAACTTTGTAGCTGCCTC+TGG | 0.368043 | 2.4:-2616405 | None:intergenic |
| AAAAGAAGAAATCGATGCTT+TGG | 0.405663 | 2.4:+2616134 | MS.gene89094:CDS |
| TTTACCGTAGATTTCTTTGC+TGG | 0.411866 | 2.4:-2613772 | None:intergenic |
| AGCATTGACTTGATAAATGA+TGG | 0.425290 | 2.4:-2614576 | None:intergenic |
| CCTCTGGTTTCACTGTTTCG+AGG | 0.427493 | 2.4:-2616389 | None:intergenic |
| ATGTTCCTCACAAAATCTAC+TGG | 0.429660 | 2.4:-2614784 | None:intergenic |
| ACGTGCTTGGGATGCGGCAG+AGG | 0.447956 | 2.4:+2614524 | MS.gene89094:CDS |
| CTTGACCTCCTCTGCAATTG+TGG | 0.451277 | 2.4:-2614340 | None:intergenic |
| CAAAGTTGCCAAACAAGAAA+AGG | 0.458834 | 2.4:+2616418 | MS.gene89094:CDS |
| TTCATACTTGTTACTGGTAG+TGG | 0.459676 | 2.4:-2612865 | None:intergenic |
| CTCAAGAAAGAAAACGTGCT+TGG | 0.462354 | 2.4:+2614511 | MS.gene89094:CDS |
| GATTTAACAGTTTCAGACTT+TGG | 0.463466 | 2.4:-2616273 | None:intergenic |
| CGCTTACGCTGCGAGGCCAC+TGG | 0.471761 | 2.4:+2614467 | MS.gene89094:CDS |
| GGAAAACAAGAAGAGGTTTG+AGG | 0.478514 | 2.4:+2612911 | MS.gene89094:CDS |
| TCAAGAAAGAAAACGTGCTT+GGG | 0.482815 | 2.4:+2614512 | MS.gene89094:CDS |
| CTAATCTTGTTCTGGAACCT+AGG | 0.484454 | 2.4:+2613903 | MS.gene89094:CDS |
| AAAGAAAACTAGAATGCAAA+AGG | 0.490045 | 2.4:+2616227 | MS.gene89094:CDS |
| TCGACATCAACATCCTCAAC+AGG | 0.494792 | 2.4:-2616528 | None:intergenic |
| GTCAAGGTCAAGTTCGTCAT+GGG | 0.498280 | 2.4:+2614363 | MS.gene89094:CDS |
| ACCTCCTCTGCAATTGTGGA+AGG | 0.511132 | 2.4:-2614336 | None:intergenic |
| ATTTGTAAGCAGATGGCAAA+GGG | 0.512364 | 2.4:+2612837 | None:intergenic |
| GAAGACTGACTTAGAGAAGA+AGG | 0.513775 | 2.4:+2616500 | MS.gene89094:CDS |
| AAAATGGGCTTAGTGGTGGC+TGG | 0.515469 | 2.4:+2614883 | MS.gene89094:CDS |
| AAGAAAAGGAAGGCAAAAGA+AGG | 0.525873 | 2.4:+2616432 | MS.gene89094:CDS |
| TACTGCAATTGAGCCAAAAG+AGG | 0.526506 | 2.4:+2616359 | MS.gene89094:CDS |
| GGGCTTAGTGGTGGCTGGAG+AGG | 0.533204 | 2.4:+2614888 | MS.gene89094:CDS |
| AGTTCCTTCGTATGCTGAAG+AGG | 0.549926 | 2.4:+2613949 | MS.gene89094:CDS |
| ATTTGAAAATATAGATGTAG+AGG | 0.552770 | 2.4:+2616107 | MS.gene89094:CDS |
| ATCGATGCTTTGGTGGAAGA+CGG | 0.557466 | 2.4:+2616144 | MS.gene89094:CDS |
| AGAAGAAATCGATGCTTTGG+TGG | 0.560673 | 2.4:+2616137 | MS.gene89094:CDS |
| ACCTTCCACAATTGCAGAGG+AGG | 0.564311 | 2.4:+2614335 | MS.gene89094:CDS |
| CACAATTGCAGAGGAGGTCA+AGG | 0.568720 | 2.4:+2614341 | MS.gene89094:CDS |
| TTGAAACATAAATTGGATGA+TGG | 0.570936 | 2.4:+2614918 | MS.gene89094:CDS |
| AACAGCTATAAACATGAGAC+CGG | 0.574078 | 2.4:-2614599 | None:intergenic |
| AAGAAAACGTGCTTGGGATG+CGG | 0.574526 | 2.4:+2614518 | MS.gene89094:CDS |
| CATTTATCAAGTCAATGCTC+CGG | 0.576831 | 2.4:+2614580 | MS.gene89094:CDS |
| GCTACTTTGATTTCATCCAG+TGG | 0.577540 | 2.4:-2614483 | None:intergenic |
| GGTCAAGTTCGTCATGGGGA+AGG | 0.581595 | 2.4:+2614368 | MS.gene89094:CDS |
| GTCTGAAACTGTTAAATCAG+AGG | 0.582113 | 2.4:+2616278 | MS.gene89094:CDS |
| GGTCAAGGTCAAGTTCGTCA+TGG | 0.586271 | 2.4:+2614362 | MS.gene89094:CDS |
| GACTTGAGGAAAACAAGAAG+AGG | 0.599382 | 2.4:+2612904 | MS.gene89094:CDS |
| CTGGCACGAGAAGAGCGCCT+AGG | 0.600809 | 2.4:-2613920 | None:intergenic |
| TATTTGTAAGCAGATGGCAA+AGG | 0.607638 | 2.4:+2612836 | None:intergenic |
| TACCAGTAACAAGTATGAAG+CGG | 0.609161 | 2.4:+2612869 | MS.gene89094:CDS |
| TGTTCCTCACAAAATCTACT+GGG | 0.611018 | 2.4:-2614783 | None:intergenic |
| TGCAGAGGAGGTCAAGGTCA+AGG | 0.611775 | 2.4:+2614347 | MS.gene89094:CDS |
| ATCTAAAACTGTGAAACCGA+AGG | 0.611948 | 2.4:+2616197 | MS.gene89094:CDS |
| GAAGAAGGAAGAACCTGTTG+AGG | 0.612004 | 2.4:+2616515 | MS.gene89094:CDS |
| AAGTCCAGCAAAGAAATCTA+CGG | 0.612501 | 2.4:+2613768 | MS.gene89094:CDS |
| GTTGCCAAACAAGAAAAGGA+AGG | 0.644080 | 2.4:+2616422 | MS.gene89094:CDS |
| TCAGTTACGCTTACGCTGCG+AGG | 0.662896 | 2.4:+2614460 | MS.gene89094:intron |
| TCAAGGTCAAGTTCGTCATG+GGG | 0.675645 | 2.4:+2614364 | MS.gene89094:CDS |
| GGCCAGAGAACAAAGACTTG+AGG | 0.687082 | 2.4:+2612890 | MS.gene89094:CDS |
| CAGACCTTCCACAATTGCAG+AGG | 0.690855 | 2.4:+2614332 | MS.gene89094:CDS |
| CTTACCTCTTCAGCATACGA+AGG | 0.705335 | 2.4:-2613953 | None:intergenic |
| CCTCGAAACAGTGAAACCAG+AGG | 0.741911 | 2.4:+2616389 | MS.gene89094:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATATAAATTTATTGA+AGG | + | chr2.4:2615775-2615794 | MS.gene89094:intron | 10.0% |
| !! | TTAAAATCTTCAAATTTAAA+AGG | + | chr2.4:2615334-2615353 | MS.gene89094:intron | 10.0% |
| !!! | GATTTTAAAATATTACAAAA+AGG | - | chr2.4:2615322-2615341 | None:intergenic | 10.0% |
| !!! | GTTTTTCAATAAATTTATAT+TGG | - | chr2.4:2615732-2615751 | None:intergenic | 10.0% |
| !!! | TCAAAATAATTAACTTATTT+TGG | + | chr2.4:2615117-2615136 | MS.gene89094:intron | 10.0% |
| !! | AATTTATTGAAGGTTAATTT+AGG | + | chr2.4:2615785-2615804 | MS.gene89094:intron | 15.0% |
| !! | AGTAGAAAAATATAAATACT+AGG | + | chr2.4:2614105-2614124 | MS.gene89094:intron | 15.0% |
| !! | TTATATATACTACTCAATAT+AGG | - | chr2.4:2613375-2613394 | None:intergenic | 15.0% |
| !! | TTATATATTCCATTATACAA+AGG | - | chr2.4:2614066-2614085 | None:intergenic | 15.0% |
| !!! | AAACTTGCAATTTTTTTATT+TGG | + | chr2.4:2613792-2613811 | MS.gene89094:intron | 15.0% |
| !!! | ATATTATCTTTATTTTGTCA+GGG | + | chr2.4:2614756-2614775 | MS.gene89094:intron | 15.0% |
| !!! | TATATTATCTTTATTTTGTC+AGG | + | chr2.4:2614755-2614774 | MS.gene89094:intron | 15.0% |
| !! | ATATAAATACTAGGAATATG+TGG | + | chr2.4:2614114-2614133 | MS.gene89094:intron | 20.0% |
| !! | ATATATAAAGCTAGTATGAA+TGG | + | chr2.4:2614078-2614097 | MS.gene89094:intron | 20.0% |
| !! | ATATTTGAATTCAAGAATCA+AGG | - | chr2.4:2614233-2614252 | None:intergenic | 20.0% |
| !! | ATTTGAAAATATAGATGTAG+AGG | + | chr2.4:2616107-2616126 | MS.gene89094:CDS | 20.0% |
| !! | ATTTGCATTGAAACATAAAT+TGG | + | chr2.4:2614911-2614930 | MS.gene89094:CDS | 20.0% |
| !! | TAAGATTATCTTAAACAAAG+TGG | - | chr2.4:2612943-2612962 | None:intergenic | 20.0% |
| !! | TATTTCACTTTATTACAGTT+TGG | + | chr2.4:2614307-2614326 | MS.gene89094:intron | 20.0% |
| !! | TCATTTATTTACCTTAATCA+TGG | + | chr2.4:2612974-2612993 | MS.gene89094:intron | 20.0% |
| !! | TTTGATATATACTACTCAAT+CGG | - | chr2.4:2613197-2613216 | None:intergenic | 20.0% |
| !!! | AAAAACTTGTTCTATAAGAA+AGG | + | chr2.4:2615746-2615765 | MS.gene89094:intron | 20.0% |
| !!! | AAATCAAGGTTTTTAAATAG+TGG | + | chr2.4:2613052-2613071 | MS.gene89094:intron | 20.0% |
| !!! | AGATGATAAATTTGTTTTAG+AGG | + | chr2.4:2614818-2614837 | MS.gene89094:CDS | 20.0% |
| !!! | ATTTTGAAAAAACTAAACTG+TGG | + | chr2.4:2615157-2615176 | MS.gene89094:intron | 20.0% |
| !!! | TTTAGATTTTTTGATTGCTT+TGG | - | chr2.4:2616184-2616203 | None:intergenic | 20.0% |
| ! | AAAGAAAACTAGAATGCAAA+AGG | + | chr2.4:2616227-2616246 | MS.gene89094:CDS | 25.0% |
| ! | AAAGTATGAGAATTTATCTC+TGG | + | chr2.4:2614162-2614181 | MS.gene89094:intron | 25.0% |
| ! | AAATTGAAATGTTAGTGACA+TGG | + | chr2.4:2614426-2614445 | MS.gene89094:intron | 25.0% |
| ! | AAGAAGAAACTCAATATCAA+AGG | - | chr2.4:2615284-2615303 | None:intergenic | 25.0% |
| ! | AATAATAACTAAAACCAGCT+TGG | + | chr2.4:2615075-2615094 | MS.gene89094:intron | 25.0% |
| ! | AATATTCAAGAGTTTCATGT+TGG | + | chr2.4:2613443-2613462 | MS.gene89094:intron | 25.0% |
| ! | ACAAATTTATCATCTGTCTT+TGG | - | chr2.4:2614813-2614832 | None:intergenic | 25.0% |
| ! | ATAAACATCAAAAACCTTGA+TGG | + | chr2.4:2613134-2613153 | MS.gene89094:intron | 25.0% |
| ! | ATTTGCAAACAAAAAACAAG+TGG | - | chr2.4:2615923-2615942 | None:intergenic | 25.0% |
| ! | CCAAAATAGTTGTTATAAGT+AGG | + | chr2.4:2615623-2615642 | MS.gene89094:intron | 25.0% |
| ! | TAACACTAAAACTATACTAG+TGG | - | chr2.4:2613646-2613665 | None:intergenic | 25.0% |
| ! | TATATTCCATTATACAAAGG+TGG | - | chr2.4:2614063-2614082 | None:intergenic | 25.0% |
| ! | TATGCATTTGTAAAATGCTT+AGG | + | chr2.4:2613013-2613032 | MS.gene89094:intron | 25.0% |
| ! | TGAATATCAAAGTTCATTAG+TGG | - | chr2.4:2615234-2615253 | None:intergenic | 25.0% |
| ! | TGACCAAATTAATTCTTACA+AGG | + | chr2.4:2615400-2615419 | MS.gene89094:intron | 25.0% |
| ! | TTCTCATAACAAAAAGCAAA+AGG | + | chr2.4:2616323-2616342 | MS.gene89094:CDS | 25.0% |
| ! | TTGAAACATAAATTGGATGA+TGG | + | chr2.4:2614918-2614937 | MS.gene89094:CDS | 25.0% |
| ! | TTGATATATACTACTCAATC+GGG | - | chr2.4:2613196-2613215 | None:intergenic | 25.0% |
| ! | TTTGCAAACAAAAAACAAGT+GGG | - | chr2.4:2615922-2615941 | None:intergenic | 25.0% |
| !! | AAGCCTTGTAAGAATTAATT+TGG | - | chr2.4:2615406-2615425 | None:intergenic | 25.0% |
| !! | AATTCTCATACTTTTGTCTT+AGG | - | chr2.4:2614156-2614175 | None:intergenic | 25.0% |
| !! | ATTCTCATACTTTTGTCTTA+GGG | - | chr2.4:2614155-2614174 | None:intergenic | 25.0% |
| !! | CCTACTTATAACAACTATTT+TGG | - | chr2.4:2615626-2615645 | None:intergenic | 25.0% |
| !! | TGATAATAGTTGTGATAATG+AGG | + | chr2.4:2613580-2613599 | MS.gene89094:intron | 25.0% |
| !! | TTTCATGTTGATTGAAATCA+AGG | + | chr2.4:2613038-2613057 | MS.gene89094:intron | 25.0% |
| !!! | AACTTTTGGAGTTTACTTTT+AGG | + | chr2.4:2615667-2615686 | MS.gene89094:intron | 25.0% |
| !!! | AATTTAAGTTTCTAGTCTTG+AGG | + | chr2.4:2615183-2615202 | MS.gene89094:intron | 25.0% |
| !!! | ACAAGATTAGTCATTGATTT+TGG | - | chr2.4:2613893-2613912 | None:intergenic | 25.0% |
| !!! | ACCATTTTAGAATTTGAGAA+GGG | - | chr2.4:2615482-2615501 | None:intergenic | 25.0% |
| !!! | ACTTTTGGAGTTTACTTTTA+GGG | + | chr2.4:2615668-2615687 | MS.gene89094:intron | 25.0% |
| !!! | GTTTTTTCAAAATCAGATCA+TGG | - | chr2.4:2615150-2615169 | None:intergenic | 25.0% |
| !!! | TAAGTCATGGTTTTAAATTG+TGG | + | chr2.4:2613287-2613306 | MS.gene89094:intron | 25.0% |
| !!! | TACCATTTTAGAATTTGAGA+AGG | - | chr2.4:2615483-2615502 | None:intergenic | 25.0% |
| !!! | TACTTTTAGGGTTGAAATTA+TGG | + | chr2.4:2615680-2615699 | MS.gene89094:intron | 25.0% |
| !!! | TTTCATGTTGGTTTATATCA+TGG | + | chr2.4:2613455-2613474 | MS.gene89094:intron | 25.0% |
| !!! | TTTGTTTTAGAGGATGAAAA+AGG | + | chr2.4:2614828-2614847 | MS.gene89094:CDS | 25.0% |
| !!! | TTTTTGTTTGCAAATGTTCT+CGG | + | chr2.4:2615928-2615947 | MS.gene89094:intron | 25.0% |
| AAAAGAAGAAATCGATGCTT+TGG | + | chr2.4:2616134-2616153 | MS.gene89094:CDS | 30.0% | |
| AAAATTCAAGACTTCTGTGT+TGG | + | chr2.4:2613262-2613281 | MS.gene89094:intron | 30.0% | |
| AAAGAAATAGTTGTCAGATG+TGG | + | chr2.4:2613097-2613116 | MS.gene89094:intron | 30.0% | |
| AAAGTTTCAAGCCATGATTA+AGG | - | chr2.4:2612988-2613007 | None:intergenic | 30.0% | |
| AAATGTTAGTGACATGGTTA+TGG | + | chr2.4:2614432-2614451 | MS.gene89094:intron | 30.0% | |
| AATGTTAGTGACATGGTTAT+GGG | + | chr2.4:2614433-2614452 | MS.gene89094:intron | 30.0% | |
| ACATTGAAGAATGAACAACA+AGG | - | chr2.4:2614680-2614699 | None:intergenic | 30.0% | |
| ACTTCCATATGAATTCTGTT+AGG | - | chr2.4:2616039-2616058 | None:intergenic | 30.0% | |
| ATCAATGACTAATCTTGTTC+TGG | + | chr2.4:2613895-2613914 | MS.gene89094:CDS | 30.0% | |
| ATCTTACCACCTTTGTATAA+TGG | + | chr2.4:2614054-2614073 | MS.gene89094:intron | 30.0% | |
| ATGATAGTTTGAACTTTGCA+AGG | - | chr2.4:2613987-2614006 | None:intergenic | 30.0% | |
| CAACTCTCTTATAACTTCAA+AGG | + | chr2.4:2615008-2615027 | MS.gene89094:intron | 30.0% | |
| CAAGTTAGTACCATTACAAA+TGG | - | chr2.4:2615538-2615557 | None:intergenic | 30.0% | |
| CATATAAAACCTTAACGTTG+CGG | + | chr2.4:2613526-2613545 | MS.gene89094:intron | 30.0% | |
| CATTGAAATAGAATCCAACT+AGG | - | chr2.4:2613559-2613578 | None:intergenic | 30.0% | |
| CTAAATCCTTGAGAACAAAA+GGG | - | chr2.4:2613711-2613730 | None:intergenic | 30.0% | |
| GACATATCACTAGTAAATGT+GGG | - | chr2.4:2615604-2615623 | None:intergenic | 30.0% | |
| GATTTAACAGTTTCAGACTT+TGG | - | chr2.4:2616276-2616295 | None:intergenic | 30.0% | |
| TAAAACTATACTAGTGGTGA+GGG | - | chr2.4:2613640-2613659 | None:intergenic | 30.0% | |
| TAAATCCTTGAGAACAAAAG+GGG | - | chr2.4:2613710-2613729 | None:intergenic | 30.0% | |
| TGAGTTTCTTCTTAAGTTCA+AGG | + | chr2.4:2615291-2615310 | MS.gene89094:intron | 30.0% | |
| TTAAATCAGAGGAAACTTCT+AGG | + | chr2.4:2616289-2616308 | MS.gene89094:CDS | 30.0% | |
| TTGGTGAAAATGTTAGTTGA+TGG | + | chr2.4:2615094-2615113 | MS.gene89094:intron | 30.0% | |
| TTTACCTTGCCCATAAAAAT+GGG | + | chr2.4:2614868-2614887 | MS.gene89094:CDS | 30.0% | |
| TTTCTGCAAAACTATCATGT+TGG | - | chr2.4:2614269-2614288 | None:intergenic | 30.0% | |
| ! | ACCCTTCTCAAATTCTAAAA+TGG | + | chr2.4:2615478-2615497 | MS.gene89094:intron | 30.0% |
| ! | AGGTAGTTTGCATAAATCTA+TGG | - | chr2.4:2613613-2613632 | None:intergenic | 30.0% |
| ! | ATAACCCGCAAAAACATTTT+AGG | - | chr2.4:2613165-2613184 | None:intergenic | 30.0% |
| ! | ATGATTTTGTAACACAGTTG+AGG | - | chr2.4:2613509-2613528 | None:intergenic | 30.0% |
| ! | CCTCTCTTTCTAAAAAACTT+TGG | - | chr2.4:2616621-2616640 | None:intergenic | 30.0% |
| ! | GGTAGTTTGCATAAATCTAT+GGG | - | chr2.4:2613612-2613631 | None:intergenic | 30.0% |
| ! | TGATGCAGTAGTTTTTGAAT+TGG | + | chr2.4:2614941-2614960 | MS.gene89094:CDS | 30.0% |
| ! | TGCAATTTCTGTCAATGTTT+TGG | - | chr2.4:2613749-2613768 | None:intergenic | 30.0% |
| ! | TGTATCTGAGAAGATTCTTT+TGG | + | chr2.4:2616458-2616477 | MS.gene89094:CDS | 30.0% |
| ! | TTTTACACAGACATTTACAC+TGG | - | chr2.4:2613425-2613444 | None:intergenic | 30.0% |
| ! | TTTTCCTATGTGCTAACTTT+TGG | + | chr2.4:2615653-2615672 | MS.gene89094:intron | 30.0% |
| !! | AACAAAAGCATTTATATGCC+AGG | + | chr2.4:2615990-2616009 | MS.gene89094:intron | 30.0% |
| !! | AGCATTGACTTGATAAATGA+TGG | - | chr2.4:2614579-2614598 | None:intergenic | 30.0% |
| !! | CTCATGTTTATAGCTGTTTT+TGG | + | chr2.4:2614604-2614623 | MS.gene89094:CDS | 30.0% |
| !! | CTTTGAAGTTATAAGAGAGT+TGG | - | chr2.4:2615010-2615029 | None:intergenic | 30.0% |
| !!! | AATTTATCTCTGGTTTTTGC+AGG | + | chr2.4:2614172-2614191 | MS.gene89094:intron | 30.0% |
| !!! | CCAAAGTTTTTTAGAAAGAG+AGG | + | chr2.4:2616618-2616637 | MS.gene89094:CDS | 30.0% |
| !!! | TGTTTATAGCTGTTTTTGGT+TGG | + | chr2.4:2614608-2614627 | MS.gene89094:CDS | 30.0% |
| AAAAACTAGCACATGAGACA+AGG | - | chr2.4:2615444-2615463 | None:intergenic | 35.0% | |
| AAAACTAGCACATGAGACAA+GGG | - | chr2.4:2615443-2615462 | None:intergenic | 35.0% | |
| AACAGCTATAAACATGAGAC+CGG | - | chr2.4:2614602-2614621 | None:intergenic | 35.0% | |
| AACTCCAAAAGTTAGCACAT+AGG | - | chr2.4:2615660-2615679 | None:intergenic | 35.0% | |
| AAGAAAAGGAAGGCAAAAGA+AGG | + | chr2.4:2616432-2616451 | MS.gene89094:CDS | 35.0% | |
| AAGAATCAAGGATTTCACAG+AGG | - | chr2.4:2614221-2614240 | None:intergenic | 35.0% | |
| AAGTCCAGCAAAGAAATCTA+CGG | + | chr2.4:2613768-2613787 | MS.gene89094:CDS | 35.0% | |
| AGCTAAGTCAAACCAAATGT+TGG | - | chr2.4:2613835-2613854 | None:intergenic | 35.0% | |
| ATGTTCCTCACAAAATCTAC+TGG | - | chr2.4:2614787-2614806 | None:intergenic | 35.0% | |
| CAAAGTTGCCAAACAAGAAA+AGG | + | chr2.4:2616418-2616437 | MS.gene89094:CDS | 35.0% | |
| CATTTATCAAGTCAATGCTC+CGG | + | chr2.4:2614580-2614599 | MS.gene89094:CDS | 35.0% | |
| CCTAAATCCTTGAGAACAAA+AGG | - | chr2.4:2613712-2613731 | None:intergenic | 35.0% | |
| CTAAAACTATACTAGTGGTG+AGG | - | chr2.4:2613641-2613660 | None:intergenic | 35.0% | |
| CTCTGTAAAGAACCAACATT+TGG | + | chr2.4:2613820-2613839 | MS.gene89094:intron | 35.0% | |
| GGAAGAGGAATACTTTCAAA+TGG | + | chr2.4:2615204-2615223 | MS.gene89094:intron | 35.0% | |
| GGACATATCACTAGTAAATG+TGG | - | chr2.4:2615605-2615624 | None:intergenic | 35.0% | |
| GGCACTAACTACTTAGAATT+TGG | - | chr2.4:2615711-2615730 | None:intergenic | 35.0% | |
| GTGTCCTAACAGAATTCATA+TGG | + | chr2.4:2616032-2616051 | MS.gene89094:intron | 35.0% | |
| GTTAGTACCATTACAAATGG+TGG | - | chr2.4:2615535-2615554 | None:intergenic | 35.0% | |
| GTTTACCTTGCCCATAAAAA+TGG | + | chr2.4:2614867-2614886 | MS.gene89094:CDS | 35.0% | |
| TAAGAGAGTTGGATGAGAAT+CGG | - | chr2.4:2614999-2615018 | None:intergenic | 35.0% | |
| TACCAGTAACAAGTATGAAG+CGG | + | chr2.4:2612869-2612888 | MS.gene89094:CDS | 35.0% | |
| TCAAGAAAGAAAACGTGCTT+GGG | + | chr2.4:2614512-2614531 | MS.gene89094:CDS | 35.0% | |
| TCGAAGACTGCAAATTGAAT+TGG | - | chr2.4:2614554-2614573 | None:intergenic | 35.0% | |
| TCTATCACGACAGATTGATT+GGG | - | chr2.4:2615052-2615071 | None:intergenic | 35.0% | |
| TGTTCCTCACAAAATCTACT+GGG | - | chr2.4:2614786-2614805 | None:intergenic | 35.0% | |
| TGTTTATATTCGAGACCCAA+TGG | + | chr2.4:2615845-2615864 | MS.gene89094:intron | 35.0% | |
| TTTACCGTAGATTTCTTTGC+TGG | - | chr2.4:2613775-2613794 | None:intergenic | 35.0% | |
| ! | AACTAACATTTTCACCAAGC+TGG | - | chr2.4:2615092-2615111 | None:intergenic | 35.0% |
| ! | AATATCCCCTTTTGTTCTCA+AGG | + | chr2.4:2613702-2613721 | MS.gene89094:intron | 35.0% |
| ! | AATTTTCCGAGGTTTTTCTG+CGG | - | chr2.4:2616592-2616611 | None:intergenic | 35.0% |
| ! | ATCTAAAACTGTGAAACCGA+AGG | + | chr2.4:2616197-2616216 | MS.gene89094:CDS | 35.0% |
| ! | CCTTTTGTTCTCAAGGATTT+AGG | + | chr2.4:2613709-2613728 | MS.gene89094:intron | 35.0% |
| ! | GTCTGAAACTGTTAAATCAG+AGG | + | chr2.4:2616278-2616297 | MS.gene89094:CDS | 35.0% |
| ! | GTTTTCTTTGTAGCTTCCTT+CGG | - | chr2.4:2616216-2616235 | None:intergenic | 35.0% |
| ! | TTCATACTTGTTACTGGTAG+TGG | - | chr2.4:2612868-2612887 | None:intergenic | 35.0% |
| ! | TTTGCCTTCCTTTTCTTGTT+TGG | - | chr2.4:2616429-2616448 | None:intergenic | 35.0% |
| !! | AAAAGCATTTATATGCCAGG+TGG | + | chr2.4:2615993-2616012 | MS.gene89094:intron | 35.0% |
| !! | ACCACTAAGCCCATTTTTAT+GGG | - | chr2.4:2614880-2614899 | None:intergenic | 35.0% |
| !! | CGTGACCTAAAATGTTTTTG+CGG | + | chr2.4:2613157-2613176 | MS.gene89094:intron | 35.0% |
| !! | GTGACCTAAAATGTTTTTGC+GGG | + | chr2.4:2613158-2613177 | MS.gene89094:intron | 35.0% |
| !! | TTCTGTGTTGGTTTAAGTCA+TGG | + | chr2.4:2613274-2613293 | MS.gene89094:intron | 35.0% |
| !!! | TATAGCTGTTTTTGGTTGGT+AGG | + | chr2.4:2614612-2614631 | MS.gene89094:intron | 35.0% |
| !!! | TCTCATGTGCTAGTTTTTGT+GGG | + | chr2.4:2615446-2615465 | MS.gene89094:intron | 35.0% |
| AAACAAAAAACAAGTGGGCC+TGG | - | chr2.4:2615917-2615936 | None:intergenic | 40.0% | |
| AAACTAGCACATGAGACAAG+GGG | - | chr2.4:2615442-2615461 | None:intergenic | 40.0% | |
| AAAGCAAGCACATACTCCAT+TGG | - | chr2.4:2615864-2615883 | None:intergenic | 40.0% | |
| AAGCAAGCACATACTCCATT+GGG | - | chr2.4:2615863-2615882 | None:intergenic | 40.0% | |
| ACCTGCAGTAATGTATTGTC+AGG | - | chr2.4:2616072-2616091 | None:intergenic | 40.0% | |
| ACGATTCTGCACAGAGAAAT+AGG | - | chr2.4:2613861-2613880 | None:intergenic | 40.0% | |
| AGAAGAAATCGATGCTTTGG+TGG | + | chr2.4:2616137-2616156 | MS.gene89094:CDS | 40.0% | |
| ATACGAAGGAACTGTGTTTC+TGG | - | chr2.4:2613942-2613961 | None:intergenic | 40.0% | |
| ATAGAATCCAACTAGGATCG+TGG | - | chr2.4:2613552-2613571 | None:intergenic | 40.0% | |
| ATATCATCATTCGATCCACC+TGG | - | chr2.4:2616011-2616030 | None:intergenic | 40.0% | |
| CAACAAGGTTAACAATGTGC+AGG | - | chr2.4:2614665-2614684 | None:intergenic | 40.0% | |
| CGATTCTGCACAGAGAAATA+GGG | - | chr2.4:2613860-2613879 | None:intergenic | 40.0% | |
| CTCAAGAAAGAAAACGTGCT+TGG | + | chr2.4:2614511-2614530 | MS.gene89094:CDS | 40.0% | |
| GACTTGAGGAAAACAAGAAG+AGG | + | chr2.4:2612904-2612923 | MS.gene89094:CDS | 40.0% | |
| GGAAAACAAGAAGAGGTTTG+AGG | + | chr2.4:2612911-2612930 | MS.gene89094:CDS | 40.0% | |
| GGTTGAAGCAGCAAGATTTA+AGG | + | chr2.4:2614962-2614981 | MS.gene89094:CDS | 40.0% | |
| GTCTATCACGACAGATTGAT+TGG | - | chr2.4:2615053-2615072 | None:intergenic | 40.0% | |
| GTTGCCAAACAAGAAAAGGA+AGG | + | chr2.4:2616422-2616441 | MS.gene89094:CDS | 40.0% | |
| TACTGCAATTGAGCCAAAAG+AGG | + | chr2.4:2616359-2616378 | MS.gene89094:CDS | 40.0% | |
| TCCTGACAATACATTACTGC+AGG | + | chr2.4:2616068-2616087 | MS.gene89094:intron | 40.0% | |
| TGTCTTGTCTTGAGTGTGAA+AGG | + | chr2.4:2615576-2615595 | MS.gene89094:intron | 40.0% | |
| TTCCTCAAGTCTTTGTTCTC+TGG | - | chr2.4:2612895-2612914 | None:intergenic | 40.0% | |
| ! | CATAAAAATGGGCTTAGTGG+TGG | + | chr2.4:2614879-2614898 | MS.gene89094:CDS | 40.0% |
| ! | GAAGACTGACTTAGAGAAGA+AGG | + | chr2.4:2616500-2616519 | MS.gene89094:CDS | 40.0% |
| ! | GCTACTTTGATTTCATCCAG+TGG | - | chr2.4:2614486-2614505 | None:intergenic | 40.0% |
| ! | TCTTCCCAGTAGATTTTGTG+AGG | + | chr2.4:2614779-2614798 | MS.gene89094:CDS | 40.0% |
| !! | AGTTTCTAGTCTTGAGGAAG+AGG | + | chr2.4:2615189-2615208 | MS.gene89094:intron | 40.0% |
| !! | CACCACTAAGCCCATTTTTA+TGG | - | chr2.4:2614881-2614900 | None:intergenic | 40.0% |
| !! | CTAATCTTGTTCTGGAACCT+AGG | + | chr2.4:2613903-2613922 | MS.gene89094:CDS | 40.0% |
| !! | GCAATGTTCTCTAAAACTGC+AGG | + | chr2.4:2615891-2615910 | MS.gene89094:intron | 40.0% |
| !! | TAAGCCCATTTTTATGGGCA+AGG | - | chr2.4:2614875-2614894 | None:intergenic | 40.0% |
| !!! | GTCTCATGTGCTAGTTTTTG+TGG | + | chr2.4:2615445-2615464 | MS.gene89094:intron | 40.0% |
| AAGAAAACGTGCTTGGGATG+CGG | + | chr2.4:2614518-2614537 | MS.gene89094:CDS | 45.0% | |
| AGTTCCTTCGTATGCTGAAG+AGG | + | chr2.4:2613949-2613968 | MS.gene89094:CDS | 45.0% | |
| ATCGATGCTTTGGTGGAAGA+CGG | + | chr2.4:2616144-2616163 | MS.gene89094:CDS | 45.0% | |
| CACACTCAAGACAAGACATC+TGG | - | chr2.4:2615574-2615593 | None:intergenic | 45.0% | |
| CTTACCTCTTCAGCATACGA+AGG | - | chr2.4:2613956-2613975 | None:intergenic | 45.0% | |
| GAAGAAGGAAGAACCTGTTG+AGG | + | chr2.4:2616515-2616534 | MS.gene89094:CDS | 45.0% | |
| GGTCATGTCTCTAACTGATG+TGG | - | chr2.4:2615385-2615404 | None:intergenic | 45.0% | |
| GTCAAGGTCAAGTTCGTCAT+GGG | + | chr2.4:2614363-2614382 | MS.gene89094:CDS | 45.0% | |
| TCAAGGTCAAGTTCGTCATG+GGG | + | chr2.4:2614364-2614383 | MS.gene89094:CDS | 45.0% | |
| TCGACATCAACATCCTCAAC+AGG | - | chr2.4:2616531-2616550 | None:intergenic | 45.0% | |
| TCGTATGCTGAAGAGGTAAG+CGG | + | chr2.4:2613956-2613975 | MS.gene89094:intron | 45.0% | |
| TGCTGAGCCACCATTTGTAA+TGG | + | chr2.4:2615525-2615544 | MS.gene89094:intron | 45.0% | |
| ! | ACAAGACATCTGGAGCATGA+AGG | - | chr2.4:2615564-2615583 | None:intergenic | 45.0% |
| ! | GCCCATAAAAATGGGCTTAG+TGG | + | chr2.4:2614876-2614895 | MS.gene89094:CDS | 45.0% |
| ! | TTTTGCAGGCTAGTGTTGTG+TGG | + | chr2.4:2614186-2614205 | MS.gene89094:intron | 45.0% |
| !! | CATTTTAGGTCACGCCATCA+AGG | - | chr2.4:2613151-2613170 | None:intergenic | 45.0% |
| !! | TTTGGAGCTCGAATTTTCCG+AGG | - | chr2.4:2616603-2616622 | None:intergenic | 45.0% |
| !!! | GTGCTAGTTTTTGTGGGTTC+AGG | + | chr2.4:2615452-2615471 | MS.gene89094:intron | 45.0% |
| !! | AAATAAAGATAATATATATT+AGG | - | chr2.4:2614751-2614770 | None:intergenic | 5.0% |
| AACCTGCCGCAGAAAAACCT+CGG | + | chr2.4:2616583-2616602 | MS.gene89094:CDS | 50.0% | |
| ACCTCCTCTGCAATTGTGGA+AGG | - | chr2.4:2614339-2614358 | None:intergenic | 50.0% | |
| ACCTTCCACAATTGCAGAGG+AGG | + | chr2.4:2614335-2614354 | MS.gene89094:CDS | 50.0% | |
| AGCACATGAGACAAGGGGTA+AGG | - | chr2.4:2615437-2615456 | None:intergenic | 50.0% | |
| ATACTAGTGGTGAGGGACAC+AGG | - | chr2.4:2613633-2613652 | None:intergenic | 50.0% | |
| CACAATTGCAGAGGAGGTCA+AGG | + | chr2.4:2614341-2614360 | MS.gene89094:CDS | 50.0% | |
| CAGACCTTCCACAATTGCAG+AGG | + | chr2.4:2614332-2614351 | MS.gene89094:CDS | 50.0% | |
| CCTCGAAACAGTGAAACCAG+AGG | + | chr2.4:2616389-2616408 | MS.gene89094:CDS | 50.0% | |
| CTTGACCTCCTCTGCAATTG+TGG | - | chr2.4:2614343-2614362 | None:intergenic | 50.0% | |
| GGCCAGAGAACAAAGACTTG+AGG | + | chr2.4:2612890-2612909 | MS.gene89094:CDS | 50.0% | |
| GGTCAAGGTCAAGTTCGTCA+TGG | + | chr2.4:2614362-2614381 | MS.gene89094:CDS | 50.0% | |
| GTTGTCAACTGTGGTTGTCG+TGG | + | chr2.4:2613314-2613333 | MS.gene89094:intron | 50.0% | |
| TGTGGTCGTGTTGTCAACTG+TGG | + | chr2.4:2613305-2613324 | MS.gene89094:intron | 50.0% | |
| ! | AAAATGGGCTTAGTGGTGGC+TGG | + | chr2.4:2614883-2614902 | MS.gene89094:CDS | 50.0% |
| ! | CCTCTGGTTTCACTGTTTCG+AGG | - | chr2.4:2616392-2616411 | None:intergenic | 50.0% |
| ! | GGCCGCTTCATACTTGTTAC+TGG | - | chr2.4:2612874-2612893 | None:intergenic | 50.0% |
| ! | TCGAGGTGTGCATCCTCTTT+TGG | - | chr2.4:2616375-2616394 | None:intergenic | 50.0% |
| !! | GTTCTCTAAAACTGCAGGCC+AGG | + | chr2.4:2615896-2615915 | MS.gene89094:intron | 50.0% |
| CAAGTTCGTCATGGGGAAGG+TGG | + | chr2.4:2614371-2614390 | MS.gene89094:intron | 55.0% | |
| GGCAACTTTGTAGCTGCCTC+TGG | - | chr2.4:2616408-2616427 | None:intergenic | 55.0% | |
| GGTCAAGTTCGTCATGGGGA+AGG | + | chr2.4:2614368-2614387 | MS.gene89094:CDS | 55.0% | |
| TCAGTTACGCTTACGCTGCG+AGG | + | chr2.4:2614460-2614479 | MS.gene89094:intron | 55.0% | |
| TGCAGAGGAGGTCAAGGTCA+AGG | + | chr2.4:2614347-2614366 | MS.gene89094:CDS | 55.0% | |
| ! | TTCCGAGGTTTTTCTGCGGC+AGG | - | chr2.4:2616588-2616607 | None:intergenic | 55.0% |
| GGATCGTGGCCGCAACGTTA+AGG | - | chr2.4:2613538-2613557 | None:intergenic | 60.0% | |
| GTTGCGGCCACGATCCTAGT+TGG | + | chr2.4:2613542-2613561 | MS.gene89094:intron | 60.0% | |
| ACGTGCTTGGGATGCGGCAG+AGG | + | chr2.4:2614524-2614543 | MS.gene89094:CDS | 65.0% | |
| GGGCTTAGTGGTGGCTGGAG+AGG | + | chr2.4:2614888-2614907 | MS.gene89094:CDS | 65.0% | |
| !! | CTGGCACGAGAAGAGCGCCT+AGG | - | chr2.4:2613923-2613942 | None:intergenic | 65.0% |
| CGCTTACGCTGCGAGGCCAC+TGG | + | chr2.4:2614467-2614486 | MS.gene89094:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 2612849 | 2616644 | 2612849 | ID=MS.gene89094 |
| chr2.4 | mRNA | 2612849 | 2616644 | 2612849 | ID=MS.gene89094.t1;Parent=MS.gene89094 |
| chr2.4 | exon | 2612849 | 2612932 | 2612849 | ID=MS.gene89094.t1.exon1;Parent=MS.gene89094.t1 |
| chr2.4 | CDS | 2612849 | 2612932 | 2612849 | ID=cds.MS.gene89094.t1;Parent=MS.gene89094.t1 |
| chr2.4 | exon | 2613724 | 2613789 | 2613724 | ID=MS.gene89094.t1.exon2;Parent=MS.gene89094.t1 |
| chr2.4 | CDS | 2613724 | 2613789 | 2613724 | ID=cds.MS.gene89094.t1;Parent=MS.gene89094.t1 |
| chr2.4 | exon | 2613875 | 2613970 | 2613875 | ID=MS.gene89094.t1.exon3;Parent=MS.gene89094.t1 |
| chr2.4 | CDS | 2613875 | 2613970 | 2613875 | ID=cds.MS.gene89094.t1;Parent=MS.gene89094.t1 |
| chr2.4 | exon | 2614325 | 2614389 | 2614325 | ID=MS.gene89094.t1.exon4;Parent=MS.gene89094.t1 |
| chr2.4 | CDS | 2614325 | 2614389 | 2614325 | ID=cds.MS.gene89094.t1;Parent=MS.gene89094.t1 |
| chr2.4 | exon | 2614464 | 2614629 | 2614464 | ID=MS.gene89094.t1.exon5;Parent=MS.gene89094.t1 |
| chr2.4 | CDS | 2614464 | 2614629 | 2614464 | ID=cds.MS.gene89094.t1;Parent=MS.gene89094.t1 |
| chr2.4 | exon | 2614777 | 2614983 | 2614777 | ID=MS.gene89094.t1.exon6;Parent=MS.gene89094.t1 |
| chr2.4 | CDS | 2614777 | 2614983 | 2614777 | ID=cds.MS.gene89094.t1;Parent=MS.gene89094.t1 |
| chr2.4 | exon | 2616090 | 2616644 | 2616090 | ID=MS.gene89094.t1.exon7;Parent=MS.gene89094.t1 |
| chr2.4 | CDS | 2616090 | 2616644 | 2616090 | ID=cds.MS.gene89094.t1;Parent=MS.gene89094.t1 |
| Gene Sequence |
| Protein sequence |
