Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89579.t1 | XP_013468459.1 | 97.6 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 8.60E-258 | 899 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89579.t1 | Q8LPJ1 | 72.6 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 6.8e-187 | 654.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89579.t1 | A0A072VLK3 | 97.6 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 6.2e-258 | 899.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68906 | MS.gene89579 | PPI |
| MS.gene89579 | MS.gene00289 | PPI |
| MS.gene89579 | MS.gene004548 | PPI |
| MS.gene52398 | MS.gene89579 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89579.t1 | MTR_1g069720 | 97.577 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 0.0 | 919 |
| MS.gene89579.t1 | MTR_7g097160 | 78.065 | 465 | 83 | 7 | 1 | 448 | 1 | 463 | 0.0 | 726 |
| MS.gene89579.t1 | MTR_1g075870 | 71.304 | 460 | 115 | 6 | 1 | 446 | 2 | 458 | 0.0 | 641 |
| MS.gene89579.t1 | MTR_1g042280 | 71.145 | 454 | 120 | 5 | 1 | 446 | 2 | 452 | 0.0 | 632 |
| MS.gene89579.t1 | MTR_1g075870 | 84.098 | 327 | 51 | 1 | 1 | 327 | 2 | 327 | 0.0 | 585 |
| MS.gene89579.t1 | MTR_2g099670 | 65.358 | 433 | 114 | 8 | 1 | 425 | 1 | 405 | 0.0 | 551 |
| MS.gene89579.t1 | MTR_4g126010 | 72.222 | 360 | 87 | 4 | 1 | 347 | 1 | 360 | 0.0 | 545 |
| MS.gene89579.t1 | MTR_8g018310 | 59.958 | 472 | 154 | 10 | 1 | 444 | 1 | 465 | 0.0 | 540 |
| MS.gene89579.t1 | MTR_8g018310 | 79.167 | 312 | 64 | 1 | 1 | 312 | 1 | 311 | 0.0 | 533 |
| MS.gene89579.t1 | MTR_2g039930 | 55.274 | 474 | 176 | 6 | 1 | 447 | 1 | 465 | 0.0 | 516 |
| MS.gene89579.t1 | MTR_0492s0030 | 68.011 | 372 | 110 | 4 | 1 | 370 | 1 | 365 | 0.0 | 515 |
| MS.gene89579.t1 | MTR_0543s0020 | 68.011 | 372 | 110 | 4 | 1 | 370 | 1 | 365 | 0.0 | 515 |
| MS.gene89579.t1 | MTR_1g042280 | 89.474 | 266 | 28 | 0 | 40 | 305 | 9 | 274 | 0.0 | 513 |
| MS.gene89579.t1 | MTR_6g087070 | 76.797 | 306 | 71 | 0 | 1 | 306 | 1 | 306 | 3.19e-179 | 508 |
| MS.gene89579.t1 | MTR_8g102930 | 77.181 | 298 | 68 | 0 | 1 | 298 | 1 | 298 | 3.98e-177 | 502 |
| MS.gene89579.t1 | MTR_1g075870 | 81.295 | 278 | 50 | 2 | 57 | 334 | 1 | 276 | 2.24e-171 | 482 |
| MS.gene89579.t1 | MTR_3g110180 | 55.582 | 421 | 171 | 4 | 1 | 417 | 1 | 409 | 3.88e-164 | 469 |
| MS.gene89579.t1 | MTR_3g110180 | 55.582 | 421 | 170 | 5 | 1 | 417 | 1 | 408 | 1.24e-162 | 466 |
| MS.gene89579.t1 | MTR_1g004990 | 70.508 | 295 | 87 | 0 | 1 | 295 | 1 | 295 | 1.71e-162 | 465 |
| MS.gene89579.t1 | MTR_2g099670 | 63.441 | 372 | 100 | 8 | 62 | 425 | 10 | 353 | 1.26e-157 | 452 |
| MS.gene89579.t1 | MTR_7g097160 | 71.118 | 322 | 74 | 7 | 144 | 448 | 25 | 344 | 4.31e-154 | 441 |
| MS.gene89579.t1 | MTR_2g039930 | 52.926 | 393 | 149 | 6 | 82 | 447 | 1 | 384 | 4.22e-136 | 397 |
| MS.gene89579.t1 | MTR_7g006030 | 37.716 | 289 | 161 | 6 | 5 | 277 | 31 | 316 | 1.21e-57 | 200 |
| MS.gene89579.t1 | MTR_3g110240 | 37.276 | 279 | 162 | 6 | 5 | 273 | 115 | 390 | 2.96e-54 | 192 |
| MS.gene89579.t1 | MTR_7g085540 | 36.525 | 282 | 163 | 5 | 9 | 277 | 147 | 425 | 4.43e-54 | 192 |
| MS.gene89579.t1 | MTR_1g007150 | 36.918 | 279 | 163 | 6 | 5 | 273 | 118 | 393 | 4.95e-54 | 191 |
| MS.gene89579.t1 | MTR_1g116210 | 36.268 | 284 | 167 | 6 | 5 | 277 | 113 | 393 | 1.45e-53 | 190 |
| MS.gene89579.t1 | MTR_8g014050 | 36.170 | 282 | 158 | 7 | 9 | 273 | 128 | 404 | 1.26e-49 | 179 |
| MS.gene89579.t1 | MTR_7g116400 | 62.687 | 67 | 24 | 1 | 80 | 145 | 1 | 67 | 9.55e-21 | 86.7 |
| MS.gene89579.t1 | MTR_7g106710 | 29.167 | 216 | 131 | 9 | 9 | 215 | 135 | 337 | 2.98e-14 | 74.7 |
| MS.gene89579.t1 | MTR_5g007590 | 45.333 | 75 | 33 | 1 | 71 | 145 | 53 | 119 | 3.62e-14 | 69.7 |
| MS.gene89579.t1 | MTR_5g022030 | 26.818 | 220 | 144 | 6 | 8 | 219 | 98 | 308 | 4.06e-14 | 74.7 |
| MS.gene89579.t1 | MTR_5g022030 | 26.818 | 220 | 144 | 6 | 8 | 219 | 98 | 308 | 4.77e-14 | 74.7 |
| MS.gene89579.t1 | MTR_7g106710 | 29.167 | 216 | 131 | 9 | 9 | 215 | 135 | 337 | 6.77e-14 | 73.9 |
| MS.gene89579.t1 | MTR_7g106710 | 29.167 | 216 | 131 | 9 | 9 | 215 | 135 | 337 | 7.40e-14 | 73.9 |
| MS.gene89579.t1 | MTR_4g128820 | 29.630 | 216 | 128 | 7 | 7 | 213 | 8 | 208 | 8.37e-14 | 73.6 |
| MS.gene89579.t1 | MTR_7g106710 | 29.167 | 216 | 131 | 9 | 9 | 215 | 135 | 337 | 1.19e-13 | 73.6 |
| MS.gene89579.t1 | MTR_3g466480 | 29.817 | 218 | 133 | 9 | 5 | 214 | 17 | 222 | 1.11e-12 | 70.1 |
| MS.gene89579.t1 | MTR_7g073520 | 34.375 | 128 | 70 | 4 | 109 | 236 | 252 | 365 | 2.51e-12 | 68.9 |
| MS.gene89579.t1 | MTR_1g026190 | 28.030 | 264 | 151 | 10 | 9 | 251 | 78 | 323 | 3.90e-12 | 68.6 |
| MS.gene89579.t1 | MTR_5g092815 | 26.609 | 233 | 148 | 8 | 9 | 233 | 91 | 308 | 9.31e-12 | 67.0 |
| MS.gene89579.t1 | MTR_7g106730 | 26.522 | 230 | 142 | 8 | 9 | 228 | 88 | 300 | 9.41e-12 | 67.0 |
| MS.gene89579.t1 | MTR_3g099920 | 28.017 | 232 | 107 | 9 | 9 | 213 | 19 | 217 | 3.30e-11 | 65.5 |
| MS.gene89579.t1 | MTR_5g092810 | 27.488 | 211 | 137 | 6 | 9 | 213 | 92 | 292 | 3.68e-11 | 65.5 |
| MS.gene89579.t1 | MTR_8g079790 | 27.948 | 229 | 139 | 10 | 6 | 219 | 122 | 339 | 4.06e-11 | 65.5 |
| MS.gene89579.t1 | MTR_1g098300 | 28.302 | 212 | 127 | 9 | 9 | 209 | 126 | 323 | 4.53e-11 | 65.5 |
| MS.gene89579.t1 | MTR_4g132860 | 25.887 | 282 | 179 | 10 | 11 | 281 | 82 | 344 | 6.35e-11 | 64.3 |
| MS.gene89579.t1 | MTR_8g099095 | 29.437 | 231 | 134 | 11 | 9 | 228 | 66 | 278 | 8.95e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89579.t1 | AT4G28540 | 72.594 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 0.0 | 679 |
| MS.gene89579.t1 | AT4G14340 | 70.861 | 453 | 116 | 7 | 1 | 446 | 7 | 450 | 0.0 | 642 |
| MS.gene89579.t1 | AT3G23340 | 71.938 | 449 | 110 | 7 | 1 | 446 | 1 | 436 | 0.0 | 642 |
| MS.gene89579.t1 | AT1G03930 | 68.354 | 474 | 121 | 8 | 1 | 448 | 1 | 471 | 0.0 | 626 |
| MS.gene89579.t1 | AT5G43320 | 67.579 | 475 | 124 | 7 | 1 | 446 | 1 | 474 | 0.0 | 625 |
| MS.gene89579.t1 | AT3G23340 | 69.265 | 449 | 108 | 8 | 1 | 446 | 1 | 422 | 0.0 | 608 |
| MS.gene89579.t1 | AT1G04440 | 66.164 | 464 | 137 | 8 | 1 | 446 | 1 | 462 | 0.0 | 599 |
| MS.gene89579.t1 | AT5G44100 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| MS.gene89579.t1 | AT5G44100 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| MS.gene89579.t1 | AT4G14340 | 83.537 | 328 | 53 | 1 | 1 | 328 | 7 | 333 | 0.0 | 576 |
| MS.gene89579.t1 | AT5G43320 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| MS.gene89579.t1 | AT5G43320 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| MS.gene89579.t1 | AT1G72710 | 75.152 | 330 | 79 | 2 | 1 | 328 | 1 | 329 | 0.0 | 536 |
| MS.gene89579.t1 | AT4G26100 | 80.872 | 298 | 57 | 0 | 1 | 298 | 1 | 298 | 0.0 | 535 |
| MS.gene89579.t1 | AT5G57015 | 80.537 | 298 | 58 | 0 | 1 | 298 | 1 | 298 | 0.0 | 529 |
| MS.gene89579.t1 | AT2G19470 | 73.556 | 329 | 84 | 3 | 1 | 326 | 1 | 329 | 0.0 | 524 |
| MS.gene89579.t1 | AT4G28880 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.36e-176 | 499 |
| MS.gene89579.t1 | AT4G28880 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.36e-176 | 499 |
| MS.gene89579.t1 | AT4G28880 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.36e-176 | 499 |
| MS.gene89579.t1 | AT4G28880 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.36e-176 | 499 |
| MS.gene89579.t1 | AT4G28860 | 70.533 | 319 | 94 | 0 | 1 | 319 | 1 | 319 | 1.04e-174 | 494 |
| MS.gene89579.t1 | AT4G28860 | 74.832 | 298 | 75 | 0 | 1 | 298 | 1 | 298 | 1.94e-174 | 495 |
| MS.gene89579.t1 | AT4G08800 | 66.216 | 296 | 68 | 2 | 1 | 296 | 1 | 264 | 3.59e-145 | 416 |
| MS.gene89579.t1 | AT2G25760 | 39.286 | 280 | 155 | 4 | 9 | 273 | 107 | 386 | 7.13e-59 | 204 |
| MS.gene89579.t1 | AT2G25760 | 38.929 | 280 | 153 | 5 | 9 | 273 | 107 | 383 | 3.77e-56 | 197 |
| MS.gene89579.t1 | AT3G13670 | 35.986 | 289 | 166 | 6 | 5 | 277 | 131 | 416 | 3.59e-53 | 189 |
| MS.gene89579.t1 | AT5G18190 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.80e-52 | 187 |
| MS.gene89579.t1 | AT5G18190 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.80e-52 | 187 |
| MS.gene89579.t1 | AT3G03940 | 35.461 | 282 | 166 | 5 | 9 | 277 | 140 | 418 | 4.55e-52 | 186 |
| MS.gene89579.t1 | AT3G50530 | 28.319 | 226 | 141 | 7 | 5 | 219 | 144 | 359 | 1.09e-13 | 73.6 |
| MS.gene89579.t1 | AT5G21326 | 29.870 | 231 | 113 | 10 | 7 | 214 | 11 | 215 | 3.36e-13 | 71.6 |
| MS.gene89579.t1 | AT3G20410 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.44e-12 | 68.2 |
| MS.gene89579.t1 | AT3G20410 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.44e-12 | 68.2 |
| MS.gene89579.t1 | AT2G17890 | 25.909 | 220 | 146 | 7 | 8 | 219 | 107 | 317 | 5.73e-12 | 68.2 |
| MS.gene89579.t1 | AT1G30270 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.30e-12 | 67.8 |
| MS.gene89579.t1 | AT1G30270 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.46e-12 | 67.8 |
| MS.gene89579.t1 | AT2G38910 | 28.063 | 253 | 144 | 10 | 1 | 230 | 119 | 356 | 1.06e-11 | 67.4 |
| MS.gene89579.t1 | AT3G50530 | 26.104 | 249 | 148 | 9 | 5 | 219 | 144 | 390 | 1.41e-11 | 67.0 |
| MS.gene89579.t1 | AT4G36070 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.47e-11 | 67.0 |
| MS.gene89579.t1 | AT4G36070 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.79e-11 | 66.6 |
| MS.gene89579.t1 | AT3G61960 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 1.88e-11 | 66.6 |
| MS.gene89579.t1 | AT3G61960 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 2.01e-11 | 66.6 |
| MS.gene89579.t1 | AT4G31170 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.84e-11 | 65.5 |
| MS.gene89579.t1 | AT4G31170 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.84e-11 | 65.5 |
| MS.gene89579.t1 | AT4G31170 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.84e-11 | 65.5 |
| MS.gene89579.t1 | AT4G31170 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.84e-11 | 65.5 |
| MS.gene89579.t1 | AT4G31170 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.84e-11 | 65.5 |
| MS.gene89579.t1 | AT4G31170 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.84e-11 | 65.5 |
| MS.gene89579.t1 | AT4G31170 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.84e-11 | 65.5 |
| MS.gene89579.t1 | AT1G29230 | 27.397 | 219 | 141 | 9 | 2 | 213 | 67 | 274 | 2.89e-11 | 65.9 |
| MS.gene89579.t1 | AT1G01140 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.10e-11 | 65.5 |
| MS.gene89579.t1 | AT1G01140 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.30e-11 | 65.5 |
| MS.gene89579.t1 | AT1G50700 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 4.34e-11 | 65.1 |
| MS.gene89579.t1 | AT1G76040 | 27.586 | 232 | 147 | 8 | 9 | 233 | 112 | 329 | 4.63e-11 | 65.1 |
| MS.gene89579.t1 | AT1G76040 | 28.037 | 214 | 136 | 7 | 9 | 215 | 112 | 314 | 4.65e-11 | 65.5 |
| MS.gene89579.t1 | AT4G23650 | 29.167 | 216 | 131 | 7 | 9 | 215 | 78 | 280 | 6.32e-11 | 64.7 |
| MS.gene89579.t1 | AT1G50700 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 6.52e-11 | 64.7 |
| MS.gene89579.t1 | AT4G04720 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.04e-11 | 64.3 |
| MS.gene89579.t1 | AT4G04720 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.04e-11 | 64.3 |
| MS.gene89579.t1 | AT1G50700 | 25.357 | 280 | 184 | 9 | 9 | 281 | 73 | 334 | 8.91e-11 | 64.3 |
Find 122 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAACTTGGAAGGAAAAT+TGG | 0.141980 | 1.1:-51645578 | MS.gene89579:CDS |
| TAGAATTTGCGCGGTTCCTC+TGG | 0.208716 | 1.1:+51640513 | None:intergenic |
| GAATGGTCACCTGAGGAATT+TGG | 0.252408 | 1.1:+51639966 | None:intergenic |
| CCGACTTCAAAGTGAATTTC+CGG | 0.284081 | 1.1:+51644719 | None:intergenic |
| AAAATTGGGAGTGGCTCTTT+TGG | 0.284578 | 1.1:-51645563 | MS.gene89579:CDS |
| ACATACCTTCTCGAATAAAA+AGG | 0.309439 | 1.1:+51641073 | None:intergenic |
| CTCTTTAAATATGAATAATC+TGG | 0.309704 | 1.1:+51641108 | None:intergenic |
| CAAGTCATAATTACCTCTAT+TGG | 0.319914 | 1.1:+51641749 | None:intergenic |
| TTCAGTTGGGAGAGAGATTC+GGG | 0.329420 | 1.1:-51640570 | MS.gene89579:intron |
| CAACACAATTCAACTCGATA+TGG | 0.357353 | 1.1:-51640023 | MS.gene89579:CDS |
| CATAGCGTGCCGTGCCTGTA+AGG | 0.359631 | 1.1:+51642143 | None:intergenic |
| AATTCCTCAGGTGACCATTC+TGG | 0.359748 | 1.1:-51639963 | MS.gene89579:CDS |
| ATTTATTCAATTATTGTAAC+CGG | 0.360177 | 1.1:-51644738 | MS.gene89579:CDS |
| GTGCTAATGTATTTCTTAAG+AGG | 0.362458 | 1.1:-51641932 | MS.gene89579:CDS |
| TTAAACTTGGAAGGAAAATT+GGG | 0.363410 | 1.1:-51645577 | MS.gene89579:CDS |
| TCCAGCCCTCAGTCCTTGCC+AGG | 0.368539 | 1.1:+51641820 | None:intergenic |
| AGGGAAAATAAGAACCTTAC+AGG | 0.372840 | 1.1:-51642157 | MS.gene89579:CDS |
| TTTCAGTTGGGAGAGAGATT+CGG | 0.379707 | 1.1:-51640571 | MS.gene89579:intron |
| GTCATGGTCATCGACCTTCT+TGG | 0.387600 | 1.1:-51644775 | MS.gene89579:CDS |
| CGACCTTCTTGGACCCAGTC+TGG | 0.390528 | 1.1:-51644764 | MS.gene89579:CDS |
| ATGATTCTTCAAGGAGGAAC+TGG | 0.404829 | 1.1:-51644841 | MS.gene89579:CDS |
| ACCTCAACGAACGGCAATAG+TGG | 0.405356 | 1.1:+51641142 | None:intergenic |
| ATTCCCCACCTCAAATGGTT+TGG | 0.406570 | 1.1:-51644817 | MS.gene89579:CDS |
| CTGGAATTCCCCACCTCAAA+TGG | 0.406870 | 1.1:-51644822 | MS.gene89579:CDS |
| CCTCAACTCCAAACCATTTG+AGG | 0.409202 | 1.1:+51644809 | None:intergenic |
| GCTTTGAGCTCCTCACTATC+AGG | 0.414666 | 1.1:-51639815 | MS.gene89579:CDS |
| GAGATTCGGGAGAAATTATC+TGG | 0.415618 | 1.1:-51640557 | MS.gene89579:CDS |
| CTCAAATGGTTTGGAGTTGA+GGG | 0.423483 | 1.1:-51644808 | MS.gene89579:CDS |
| TCAGCTGTTAATATACAAAC+TGG | 0.426788 | 1.1:-51645413 | MS.gene89579:intron |
| GCAAGTGTCAACACCCATCT+TGG | 0.433561 | 1.1:-51642121 | MS.gene89579:CDS |
| ATAGGGATCTTCAGACTCAT+AGG | 0.434481 | 1.1:-51642479 | MS.gene89579:CDS |
| TTTATCATGGATCATGTGAT+TGG | 0.443086 | 1.1:-51645608 | None:intergenic |
| CCTCAAATGGTTTGGAGTTG+AGG | 0.448526 | 1.1:-51644809 | MS.gene89579:CDS |
| TTGCCGTTCGTTGAGGTTTG+AGG | 0.451388 | 1.1:-51641136 | MS.gene89579:CDS |
| ATATCGAGTTGAATTGTGTT+GGG | 0.458129 | 1.1:+51640025 | None:intergenic |
| ACAAAGTCGAAGGGATGATC+TGG | 0.458546 | 1.1:-51641969 | MS.gene89579:CDS |
| TTTCGCAAGGCCGAAGTCAA+TGG | 0.458863 | 1.1:+51642506 | None:intergenic |
| CATAAAGCACAAAAGATTCC+AGG | 0.463717 | 1.1:-51640776 | MS.gene89579:intron |
| ATTGAATAAATCTTCCAGAC+TGG | 0.465309 | 1.1:+51644750 | None:intergenic |
| AAACTGTATATGATTCTTCA+AGG | 0.471640 | 1.1:-51644850 | MS.gene89579:CDS |
| GTGGAAAGTTTAAACTTGGA+AGG | 0.472881 | 1.1:-51645586 | MS.gene89579:CDS |
| GGCAGGATGGCCACAAGTGG+GGG | 0.486821 | 1.1:-51639942 | MS.gene89579:CDS |
| ATAGTGAAGCTGTGGATGCC+TGG | 0.493685 | 1.1:+51644879 | None:intergenic |
| TCTTCCCTGGCAAGGACTGA+GGG | 0.499281 | 1.1:-51641825 | MS.gene89579:CDS |
| TTGTGGCCATCCTGCCAGAA+TGG | 0.501550 | 1.1:+51639949 | None:intergenic |
| CCCTGGCAAGGACTGAGGGC+TGG | 0.502421 | 1.1:-51641821 | MS.gene89579:CDS |
| GTCAACACCCATCTTGGAAT+CGG | 0.505171 | 1.1:-51642115 | MS.gene89579:intron |
| ATCATCATAAGTCCTATGTC+TGG | 0.505727 | 1.1:+51640469 | None:intergenic |
| CATATCGAGTTGAATTGTGT+TGG | 0.505789 | 1.1:+51640024 | None:intergenic |
| ATTGGTGGAAAGTTTAAACT+TGG | 0.508093 | 1.1:-51645590 | MS.gene89579:CDS |
| AGAGGAGGTGGCTGTTAAGC+TGG | 0.511655 | 1.1:-51645390 | MS.gene89579:intron |
| CAGGTGTATGCCATTGACTT+CGG | 0.512497 | 1.1:-51642516 | MS.gene89579:CDS |
| AGAATTTGCGCGGTTCCTCT+GGG | 0.513807 | 1.1:+51640514 | None:intergenic |
| CTGGCAGGATGGCCACAAGT+GGG | 0.513957 | 1.1:-51639944 | MS.gene89579:CDS |
| AGGGATGATCTGGAATCTCT+TGG | 0.515030 | 1.1:-51641959 | MS.gene89579:CDS |
| GAAGGTATCAACTCCAATAG+AGG | 0.515426 | 1.1:-51641762 | MS.gene89579:intron |
| GTCTTCCCTGGCAAGGACTG+AGG | 0.516641 | 1.1:-51641826 | MS.gene89579:CDS |
| AATTGTCTGGCTTTATGTCT+CGG | 0.521040 | 1.1:+51644535 | None:intergenic |
| ATCACTTACCGATTCCAAGA+TGG | 0.522339 | 1.1:+51642107 | None:intergenic |
| TCCACTATTGCCGTTCGTTG+AGG | 0.522705 | 1.1:-51641143 | MS.gene89579:CDS |
| CAGAGTAGTGGCAGCTCTAG+AGG | 0.523385 | 1.1:-51640918 | MS.gene89579:CDS |
| TCACTTACCGATTCCAAGAT+GGG | 0.528445 | 1.1:+51642108 | None:intergenic |
| AGGCCCATCAGAAAATTGTC+TGG | 0.529417 | 1.1:+51644522 | None:intergenic |
| AACTCCAAACCATTTGAGGT+GGG | 0.533255 | 1.1:+51644813 | None:intergenic |
| TGGCAGGATGGCCACAAGTG+GGG | 0.534769 | 1.1:-51639943 | MS.gene89579:CDS |
| CTCTATGTGCGCCAGATGGA+CGG | 0.535759 | 1.1:+51639919 | None:intergenic |
| CTTGATTTGCTTTACGTCCG+AGG | 0.536022 | 1.1:+51644502 | None:intergenic |
| TTGTAACGACAGCATGGCAC+TGG | 0.538838 | 1.1:-51640830 | MS.gene89579:intron |
| ATCATGGATCATGTGATTGG+TGG | 0.540398 | 1.1:-51645605 | MS.gene89579:CDS |
| TATACAAACTGGAGAGGAGG+TGG | 0.543406 | 1.1:-51645402 | MS.gene89579:CDS |
| TTGAATAAATCTTCCAGACT+GGG | 0.547330 | 1.1:+51644751 | None:intergenic |
| TAATGTATTTCTTAAGAGGA+AGG | 0.552033 | 1.1:-51641928 | MS.gene89579:intron |
| TAGTGGCAGCTCTAGAGGAC+GGG | 0.553447 | 1.1:-51640913 | MS.gene89579:intron |
| TCTGGCAGGATGGCCACAAG+TGG | 0.554722 | 1.1:-51639945 | MS.gene89579:CDS |
| GTAGTGGCAGCTCTAGAGGA+CGG | 0.557752 | 1.1:-51640914 | MS.gene89579:CDS |
| GTTGAATACATGCATTCAAG+AGG | 0.558652 | 1.1:-51644567 | MS.gene89579:CDS |
| TCATCAAAGCCAAATTCCTC+AGG | 0.559975 | 1.1:-51639975 | MS.gene89579:CDS |
| TCCAGGAATCTGTGAAGACC+AGG | 0.574379 | 1.1:-51644897 | MS.gene89579:intron |
| CCTCAGGTGACCATTCTGGC+AGG | 0.574601 | 1.1:-51639959 | MS.gene89579:CDS |
| AGGTGACCATTCTGGCAGGA+TGG | 0.577708 | 1.1:-51639955 | MS.gene89579:CDS |
| TGGTGTGTTCACCGTGATGA+GGG | 0.579905 | 1.1:+51640489 | None:intergenic |
| CTCATAGGCACATACCGTAC+AGG | 0.580718 | 1.1:-51642464 | MS.gene89579:intron |
| AGACAGACTTACTAATTGAT+CGG | 0.581760 | 1.1:+51644684 | None:intergenic |
| CTTCCAGACTGGGTCCAAGA+AGG | 0.585280 | 1.1:+51644761 | None:intergenic |
| GATCACAAAACCAACCTGTA+CGG | 0.586380 | 1.1:+51642450 | None:intergenic |
| CAACTCCAAACCATTTGAGG+TGG | 0.588360 | 1.1:+51644812 | None:intergenic |
| GAGATTACTTCCTGATAGTG+AGG | 0.590566 | 1.1:+51639805 | None:intergenic |
| CCAGCCCTCAGTCCTTGCCA+GGG | 0.593406 | 1.1:+51641821 | None:intergenic |
| TGAACTCTATGTGCGCCAGA+TGG | 0.596034 | 1.1:+51639915 | None:intergenic |
| ATTTGGCTTTGATGATACCA+TGG | 0.597247 | 1.1:+51639983 | None:intergenic |
| TGGTGGCAGAACAAAGTCGA+AGG | 0.597531 | 1.1:-51641979 | MS.gene89579:intron |
| GCTTGTTTCGTATCATACAC+AGG | 0.597643 | 1.1:+51639891 | None:intergenic |
| ACGGTGAACACACCAGACAT+AGG | 0.599179 | 1.1:-51640481 | MS.gene89579:CDS |
| GCTCGCAATGGGTCTATGAG+AGG | 0.601655 | 1.1:-51639861 | MS.gene89579:CDS |
| CCGGAAATTCACTTTGAAGT+CGG | 0.603149 | 1.1:-51644719 | MS.gene89579:CDS |
| CTGGTGTGTTCACCGTGATG+AGG | 0.605762 | 1.1:+51640488 | None:intergenic |
| AGGAGCTCAAAGCTCCTCAG+AGG | 0.611695 | 1.1:+51639825 | None:intergenic |
| ACATAGGACTTATGATGATG+TGG | 0.615199 | 1.1:-51640465 | MS.gene89579:intron |
| ACGACAGCATGGCACTGGCA+AGG | 0.615258 | 1.1:-51640825 | MS.gene89579:intron |
| CTTGGAAGGAAAATTGGGAG+TGG | 0.615747 | 1.1:-51645572 | MS.gene89579:CDS |
| TTGAAGTATCCACAGAGTAG+TGG | 0.619683 | 1.1:-51640930 | MS.gene89579:CDS |
| ACTCCAAACCATTTGAGGTG+GGG | 0.620464 | 1.1:+51644814 | None:intergenic |
| TTTGACTCATAGTGAAGCTG+TGG | 0.620621 | 1.1:+51644871 | None:intergenic |
| CGATAAAATCAGTGAGACGA+AGG | 0.621170 | 1.1:-51641780 | MS.gene89579:CDS |
| TGTCCTCAAACCTCAACGAA+CGG | 0.628598 | 1.1:+51641133 | None:intergenic |
| TGAGGGAGAGTACAATGTCA+TGG | 0.631924 | 1.1:-51644791 | MS.gene89579:CDS |
| AAATAAGAACCTTACAGGCA+CGG | 0.632067 | 1.1:-51642152 | MS.gene89579:CDS |
| GATGAGGGCTAGAATTTGCG+CGG | 0.634849 | 1.1:+51640504 | None:intergenic |
| TAATATACAAACTGGAGAGG+AGG | 0.635465 | 1.1:-51645405 | MS.gene89579:CDS |
| AAGCAGTTCAAGAAGAGCCA+TGG | 0.646616 | 1.1:-51640000 | MS.gene89579:CDS |
| CTAGAGCTGCCACTACTCTG+TGG | 0.650464 | 1.1:+51640921 | None:intergenic |
| AAGTATGATACAAACTCAGA+GGG | 0.655305 | 1.1:+51641165 | None:intergenic |
| TGTTAATATACAAACTGGAG+AGG | 0.660638 | 1.1:-51645408 | MS.gene89579:CDS |
| GAAGTATGATACAAACTCAG+AGG | 0.660966 | 1.1:+51641164 | None:intergenic |
| GGTGGCAGAACAAAGTCGAA+GGG | 0.669079 | 1.1:-51641978 | MS.gene89579:intron |
| TTGTTGAAGCATTCACCCAG+AGG | 0.669158 | 1.1:-51640529 | MS.gene89579:CDS |
| CCTGCCAGAATGGTCACCTG+AGG | 0.679602 | 1.1:+51639959 | None:intergenic |
| GCAAATTCTAGCCCTCATCA+CGG | 0.684087 | 1.1:-51640500 | MS.gene89579:CDS |
| AGCTCCTCAGAGGATCATCA+CGG | 0.696325 | 1.1:+51639835 | None:intergenic |
| GCCACCGTGATGATCCTCTG+AGG | 0.725239 | 1.1:-51639839 | MS.gene89579:CDS |
| CTGTATATGATTCTTCAAGG+AGG | 0.728537 | 1.1:-51644847 | MS.gene89579:CDS |
| TCCTCAGAGGATCATCACGG+TGG | 0.751052 | 1.1:+51639838 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATTATTACATTATT+AGG | - | chr1.1:51643373-51643392 | MS.gene89579:intron | 10.0% |
| !! | ATTAAATATAAGAAAATCTT+GGG | - | chr1.1:51641297-51641316 | MS.gene89579:intron | 10.0% |
| !! | CCATAAAATAAAATAAAAAA+TGG | + | chr1.1:51642812-51642831 | None:intergenic | 10.0% |
| !! | TAATCATATATAGATAATTT+AGG | + | chr1.1:51641039-51641058 | None:intergenic | 10.0% |
| !!! | CCATTTTTTATTTTATTTTA+TGG | - | chr1.1:51642809-51642828 | MS.gene89579:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+CGG | - | chr1.1:51643924-51643943 | MS.gene89579:intron | 10.0% |
| !!! | TACTTTTCTTTTTTAAATTA+CGG | + | chr1.1:51644054-51644073 | None:intergenic | 10.0% |
| !!! | TTTATGAAAATAACATTTTA+GGG | + | chr1.1:51644121-51644140 | None:intergenic | 10.0% |
| !!! | TTTTAGATTTGTAAATAAAA+CGG | + | chr1.1:51645181-51645200 | None:intergenic | 10.0% |
| !!! | TTTTATGAAAATAACATTTT+AGG | + | chr1.1:51644122-51644141 | None:intergenic | 10.0% |
| !! | AAAAACATAATAGCTTAAAA+TGG | + | chr1.1:51641124-51641143 | None:intergenic | 15.0% |
| !! | AAAACATAATAGCTTAAAAT+GGG | + | chr1.1:51641123-51641142 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTATTGTAAC+CGG | - | chr1.1:51640673-51640692 | MS.gene89579:intron | 15.0% |
| !! | CTAAAATATTATCTACATTT+AGG | + | chr1.1:51643144-51643163 | None:intergenic | 15.0% |
| !! | GATATTATCTTAACTATTTA+GGG | - | chr1.1:51640154-51640173 | MS.gene89579:intron | 15.0% |
| !! | GATTAAATATAAGAAAATCT+TGG | - | chr1.1:51641296-51641315 | MS.gene89579:intron | 15.0% |
| !! | TAATATGGTTCTTTATATAA+TGG | - | chr1.1:51640771-51640790 | MS.gene89579:intron | 15.0% |
| !! | TATTATATTGATATTGATAG+CGG | - | chr1.1:51641886-51641905 | MS.gene89579:intron | 15.0% |
| !!! | CATAGTAATATTTACTTTTT+GGG | - | chr1.1:51642344-51642363 | MS.gene89579:intron | 15.0% |
| !!! | TCATAGTAATATTTACTTTT+TGG | - | chr1.1:51642343-51642362 | MS.gene89579:intron | 15.0% |
| !!! | TTGTTTTTTTACATTTTTGT+TGG | - | chr1.1:51644542-51644561 | MS.gene89579:CDS | 15.0% |
| !! | AACTAAAACAATATCAAACT+TGG | - | chr1.1:51643172-51643191 | MS.gene89579:intron | 20.0% |
| !! | AATGATTTCCAGTAAAAAAA+TGG | + | chr1.1:51643120-51643139 | None:intergenic | 20.0% |
| !! | ACAAAATATATTGAGATCAA+TGG | + | chr1.1:51643210-51643229 | None:intergenic | 20.0% |
| !! | AGCAATTATTAAGCAATATA+AGG | + | chr1.1:51643041-51643060 | None:intergenic | 20.0% |
| !! | ATATTTACAAATGGTAAACA+AGG | + | chr1.1:51645118-51645137 | None:intergenic | 20.0% |
| !! | CAAAATATATTGAGATCAAT+GGG | + | chr1.1:51643209-51643228 | None:intergenic | 20.0% |
| !! | CTAGTACAAATATTTACAAA+TGG | + | chr1.1:51645127-51645146 | None:intergenic | 20.0% |
| !! | CTCTTTAAATATGAATAATC+TGG | + | chr1.1:51644306-51644325 | None:intergenic | 20.0% |
| !! | GGATATTATCTTAACTATTT+AGG | - | chr1.1:51640153-51640172 | MS.gene89579:intron | 20.0% |
| !!! | AAGCTATTATGTTTTTTCTT+TGG | - | chr1.1:51641128-51641147 | MS.gene89579:CDS | 20.0% |
| !!! | AGTATATTTTACTGGAAATT+CGG | - | chr1.1:51644389-51644408 | MS.gene89579:intron | 20.0% |
| !!! | ATATTTTTCTTCTTTGCTTA+GGG | - | chr1.1:51643235-51643254 | MS.gene89579:intron | 20.0% |
| !!! | ATGCTTTAAATGTTAACTTT+TGG | - | chr1.1:51640242-51640261 | MS.gene89579:intron | 20.0% |
| !!! | GTTTCTTGTTTATTAGAAAT+TGG | - | chr1.1:51643769-51643788 | MS.gene89579:intron | 20.0% |
| !!! | TACAAAATGAAGTCTTTTAA+AGG | + | chr1.1:51642690-51642709 | None:intergenic | 20.0% |
| !!! | TCTTTATTTATATCAAAGAC+AGG | + | chr1.1:51642110-51642129 | None:intergenic | 20.0% |
| !!! | TTACGTGCTTTTATAAAAAT+AGG | - | chr1.1:51644206-51644225 | MS.gene89579:intron | 20.0% |
| !!! | TTTCATGAATTTCTAGAATT+TGG | - | chr1.1:51640092-51640111 | MS.gene89579:intron | 20.0% |
| !!! | TTTGGTAGATTTTTATTTTC+TGG | - | chr1.1:51640110-51640129 | MS.gene89579:intron | 20.0% |
| !!! | TTTTTTTTGTTATCAGTTAG+TGG | - | chr1.1:51640427-51640446 | MS.gene89579:intron | 20.0% |
| ! | AAACTGTATATGATTCTTCA+AGG | - | chr1.1:51640561-51640580 | MS.gene89579:CDS | 25.0% |
| ! | ACCTAGAAAAGAATTATGAT+AGG | - | chr1.1:51641065-51641084 | MS.gene89579:intron | 25.0% |
| ! | AGAGTCTAAATAGGAATAAA+TGG | - | chr1.1:51641230-51641249 | MS.gene89579:intron | 25.0% |
| ! | AGCTGAATAAGAATGAAATT+CGG | - | chr1.1:51644671-51644690 | MS.gene89579:intron | 25.0% |
| ! | ATAACATCAAAATACAAGCT+TGG | - | chr1.1:51642161-51642180 | MS.gene89579:intron | 25.0% |
| ! | ATATACTAATTGTGTGATTG+TGG | - | chr1.1:51643412-51643431 | MS.gene89579:intron | 25.0% |
| ! | ATATCATTTATCGAAGGAAA+TGG | - | chr1.1:51640211-51640230 | MS.gene89579:intron | 25.0% |
| ! | ATGAAAATAAGCAAAATGAC+TGG | + | chr1.1:51642293-51642312 | None:intergenic | 25.0% |
| ! | ATGTTATAATTAGCACTGTA+TGG | + | chr1.1:51642594-51642613 | None:intergenic | 25.0% |
| ! | CCTAGAAAAGAATTATGATA+GGG | - | chr1.1:51641066-51641085 | MS.gene89579:intron | 25.0% |
| ! | GGTAAACAAGGTAAAAAAAA+GGG | + | chr1.1:51645106-51645125 | None:intergenic | 25.0% |
| ! | TAATGTATTTCTTAAGAGGA+AGG | - | chr1.1:51643483-51643502 | MS.gene89579:intron | 25.0% |
| ! | TGAAAAAACAAACAAAAGTG+AGG | + | chr1.1:51640814-51640833 | None:intergenic | 25.0% |
| ! | TGGTAAACAAGGTAAAAAAA+AGG | + | chr1.1:51645107-51645126 | None:intergenic | 25.0% |
| ! | TTAAACTTGGAAGGAAAATT+GGG | - | chr1.1:51639834-51639853 | MS.gene89579:CDS | 25.0% |
| ! | TTAATTCCTTTGTCTATTGT+GGG | - | chr1.1:51640968-51640987 | MS.gene89579:CDS | 25.0% |
| ! | TTAGGTTAAGCTAAACAATT+AGG | - | chr1.1:51643006-51643025 | MS.gene89579:intron | 25.0% |
| ! | TTCAGTTATTTGTGTTTGAA+AGG | - | chr1.1:51641512-51641531 | MS.gene89579:intron | 25.0% |
| ! | TTGGCGAAAGTTATTTAATA+TGG | - | chr1.1:51640756-51640775 | MS.gene89579:intron | 25.0% |
| ! | TTTAAACTTGGAAGGAAAAT+TGG | - | chr1.1:51639833-51639852 | MS.gene89579:CDS | 25.0% |
| ! | TTTAATTCCTTTGTCTATTG+TGG | - | chr1.1:51640967-51640986 | MS.gene89579:CDS | 25.0% |
| !! | AAAGCAATTGGTTTCTTTAA+GGG | - | chr1.1:51642725-51642744 | MS.gene89579:intron | 25.0% |
| !! | AATGTTAACTTTTGGTCAAT+AGG | - | chr1.1:51640250-51640269 | MS.gene89579:intron | 25.0% |
| !! | ACAAGATTCTATCATCTTTT+CGG | + | chr1.1:51641715-51641734 | None:intergenic | 25.0% |
| !! | ATGCATTCAGTATATTTTAC+TGG | - | chr1.1:51644381-51644400 | MS.gene89579:intron | 25.0% |
| !! | ATGCATTTTCCACATTATTT+TGG | + | chr1.1:51644367-51644386 | None:intergenic | 25.0% |
| !! | GATATTTTTCTTCTTTGCTT+AGG | - | chr1.1:51643234-51643253 | MS.gene89579:intron | 25.0% |
| !! | TATTTTCATATCACGTCTAT+TGG | - | chr1.1:51642304-51642323 | MS.gene89579:intron | 25.0% |
| !! | TGCATTTTCCACATTATTTT+GGG | + | chr1.1:51644366-51644385 | None:intergenic | 25.0% |
| !! | TGTCATATATTTTCTTGTGT+GGG | - | chr1.1:51641189-51641208 | MS.gene89579:intron | 25.0% |
| !! | TTATGTGAAAAAGCATGAAA+TGG | + | chr1.1:51645071-51645090 | None:intergenic | 25.0% |
| !! | TTTGTGATCATAATTTTAGG+AGG | - | chr1.1:51642975-51642994 | MS.gene89579:intron | 25.0% |
| !!! | AACTTAGGATTTTAAAGGAA+AGG | + | chr1.1:51642268-51642287 | None:intergenic | 25.0% |
| !!! | AATTTGACTATGTTTTTGAC+TGG | - | chr1.1:51644452-51644471 | MS.gene89579:intron | 25.0% |
| !!! | AGTAATATTTACTTTTTGGG+AGG | - | chr1.1:51642347-51642366 | MS.gene89579:intron | 25.0% |
| !!! | AGTCTTTTAAAGGATACAAA+CGG | + | chr1.1:51642680-51642699 | None:intergenic | 25.0% |
| !!! | CAGTCGATTATATTTAGTTT+TGG | + | chr1.1:51642850-51642869 | None:intergenic | 25.0% |
| !!! | CTAACATCAACTTTTTTTAC+CGG | + | chr1.1:51641766-51641785 | None:intergenic | 25.0% |
| !!! | GGTTTTGTGATCATAATTTT+AGG | - | chr1.1:51642972-51642991 | MS.gene89579:intron | 25.0% |
| !!! | GTAATATTTACTTTTTGGGA+GGG | - | chr1.1:51642348-51642367 | MS.gene89579:intron | 25.0% |
| !!! | TAACATCAACTTTTTTTACC+GGG | + | chr1.1:51641765-51641784 | None:intergenic | 25.0% |
| !!! | TTGTGATCATAATTTTAGGA+GGG | - | chr1.1:51642976-51642995 | MS.gene89579:intron | 25.0% |
| AAAAAAAAACTGACAGATGC+AGG | + | chr1.1:51643692-51643711 | None:intergenic | 30.0% | |
| AAAAGTTTGATAGAGGAGTA+TGG | - | chr1.1:51641007-51641026 | MS.gene89579:intron | 30.0% | |
| AAGTATGATACAAACTCAGA+GGG | + | chr1.1:51644249-51644268 | None:intergenic | 30.0% | |
| ACATACCTTCTCGAATAAAA+AGG | + | chr1.1:51644341-51644360 | None:intergenic | 30.0% | |
| ACATTGAGACGATTAGAAAT+TGG | + | chr1.1:51640480-51640499 | None:intergenic | 30.0% | |
| AGACAGACTTACTAATTGAT+CGG | + | chr1.1:51640730-51640749 | None:intergenic | 30.0% | |
| ATATTCCCCTCTTAATATTC+AGG | + | chr1.1:51641360-51641379 | None:intergenic | 30.0% | |
| ATTGAATAAATCTTCCAGAC+TGG | + | chr1.1:51640664-51640683 | None:intergenic | 30.0% | |
| ATTGGTGGAAAGTTTAAACT+TGG | - | chr1.1:51639821-51639840 | MS.gene89579:CDS | 30.0% | |
| CAACTCAACATTATACTCAA+GGG | + | chr1.1:51642470-51642489 | None:intergenic | 30.0% | |
| CAAGTCATAATTACCTCTAT+TGG | + | chr1.1:51643665-51643684 | None:intergenic | 30.0% | |
| CATAGTTGAAGAGTCTAAAT+AGG | - | chr1.1:51641221-51641240 | MS.gene89579:intron | 30.0% | |
| CTATAGACAAGTATAACACA+TGG | - | chr1.1:51641092-51641111 | MS.gene89579:CDS | 30.0% | |
| GAAAAGATATGATTGTGCAA+TGG | - | chr1.1:51641628-51641647 | MS.gene89579:intron | 30.0% | |
| GAATATTAAGAGGGGAATAT+TGG | - | chr1.1:51641360-51641379 | MS.gene89579:intron | 30.0% | |
| GTATGACCTGAATATTAAGA+GGG | - | chr1.1:51641351-51641370 | MS.gene89579:intron | 30.0% | |
| GTATGTTACCCAAAATAATG+TGG | - | chr1.1:51644355-51644374 | MS.gene89579:intron | 30.0% | |
| GTGCTAATGTATTTCTTAAG+AGG | - | chr1.1:51643479-51643498 | MS.gene89579:intron | 30.0% | |
| TACCCATTATAATGAGTCTT+CGG | - | chr1.1:51642132-51642151 | MS.gene89579:CDS | 30.0% | |
| TATAATTAGCACTGTATGGT+TGG | + | chr1.1:51642590-51642609 | None:intergenic | 30.0% | |
| TATGACCTGAATATTAAGAG+GGG | - | chr1.1:51641352-51641371 | MS.gene89579:intron | 30.0% | |
| TCAGCTGTTAATATACAAAC+TGG | - | chr1.1:51639998-51640017 | MS.gene89579:CDS | 30.0% | |
| TCTTGAAATGAGATGTGAAA+TGG | - | chr1.1:51640285-51640304 | MS.gene89579:intron | 30.0% | |
| TGGAGAAAGATATAAATCGT+AGG | - | chr1.1:51641457-51641476 | MS.gene89579:intron | 30.0% | |
| TGGTTGAGTAACATTTGAAT+TGG | - | chr1.1:51642181-51642200 | MS.gene89579:intron | 30.0% | |
| TGTTAATATACAAACTGGAG+AGG | - | chr1.1:51640003-51640022 | MS.gene89579:CDS | 30.0% | |
| TGTTCTGTCAAAAATATTCC+AGG | - | chr1.1:51640497-51640516 | MS.gene89579:CDS | 30.0% | |
| TTGAATAAATCTTCCAGACT+GGG | + | chr1.1:51640663-51640682 | None:intergenic | 30.0% | |
| ! | AAAGTTTGATAGAGGAGTAT+GGG | - | chr1.1:51641008-51641027 | MS.gene89579:intron | 30.0% |
| ! | AAGATTTTACATGAGACAGA+AGG | + | chr1.1:51644161-51644180 | None:intergenic | 30.0% |
| ! | AGATTTTACATGAGACAGAA+GGG | + | chr1.1:51644160-51644179 | None:intergenic | 30.0% |
| ! | ATATTTTACTGGAAATTCGG+TGG | - | chr1.1:51644392-51644411 | MS.gene89579:intron | 30.0% |
| ! | ATCTTTTGTGCTTTATGTAC+AGG | + | chr1.1:51644632-51644651 | None:intergenic | 30.0% |
| ! | ATTTCCTTCAAACTTTTGAG+AGG | + | chr1.1:51641540-51641559 | None:intergenic | 30.0% |
| ! | CAAAGCAATTGGTTTCTTTA+AGG | - | chr1.1:51642724-51642743 | MS.gene89579:intron | 30.0% |
| ! | CCCTATCATAATTCTTTTCT+AGG | + | chr1.1:51641069-51641088 | None:intergenic | 30.0% |
| ! | CCTCTATCAAACTTTTCAAA+AGG | + | chr1.1:51641003-51641022 | None:intergenic | 30.0% |
| ! | CTGTCATATATTTTCTTGTG+TGG | - | chr1.1:51641188-51641207 | MS.gene89579:intron | 30.0% |
| ! | TAGTTTTTGACAGAATGCAA+CGG | - | chr1.1:51642025-51642044 | MS.gene89579:intron | 30.0% |
| ! | TCATGCTATTTGTTTCAGTT+GGG | - | chr1.1:51644828-51644847 | MS.gene89579:CDS | 30.0% |
| ! | TGGTGAACTTAGGATTTTAA+AGG | + | chr1.1:51642273-51642292 | None:intergenic | 30.0% |
| ! | TTAGAGATGAGAATTTTGCA+GGG | - | chr1.1:51641588-51641607 | MS.gene89579:intron | 30.0% |
| ! | TTCATGCTATTTGTTTCAGT+TGG | - | chr1.1:51644827-51644846 | MS.gene89579:CDS | 30.0% |
| ! | TTGTGTAGTTTGGATGATTT+TGG | - | chr1.1:51642074-51642093 | MS.gene89579:intron | 30.0% |
| ! | TTTAGAGATGAGAATTTTGC+AGG | - | chr1.1:51641587-51641606 | MS.gene89579:intron | 30.0% |
| !! | ATATCGAGTTGAATTGTGTT+GGG | + | chr1.1:51645389-51645408 | None:intergenic | 30.0% |
| !! | ATTTCCTAAATTTGTTGTGC+AGG | + | chr1.1:51642437-51642456 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAGTTTGATAG+AGG | - | chr1.1:51641000-51641019 | MS.gene89579:intron | 30.0% |
| !! | GTTTTAATGGTTGTGTAGTT+TGG | - | chr1.1:51642064-51642083 | MS.gene89579:intron | 30.0% |
| !! | TCAGTTTATTGATTTCATCC+TGG | - | chr1.1:51642560-51642579 | MS.gene89579:intron | 30.0% |
| !! | TTTCCTAAATTTGTTGTGCA+GGG | + | chr1.1:51642436-51642455 | None:intergenic | 30.0% |
| !! | TTTTTGTTATCAGTTAGTGG+TGG | - | chr1.1:51640430-51640449 | MS.gene89579:intron | 30.0% |
| !!! | AACATCAACTTTTTTTACCG+GGG | + | chr1.1:51641764-51641783 | None:intergenic | 30.0% |
| !!! | ATAACATTTTAGGGTGTGTT+TGG | + | chr1.1:51644112-51644131 | None:intergenic | 30.0% |
| !!! | CATTTGATTCGTGGTTTTAA+TGG | - | chr1.1:51642051-51642070 | MS.gene89579:intron | 30.0% |
| !!! | CTGTTATGCCATTTTTTTAC+TGG | - | chr1.1:51643109-51643128 | MS.gene89579:intron | 30.0% |
| !!! | GGTAGATTTTTATTTTCTGG+TGG | - | chr1.1:51640113-51640132 | MS.gene89579:intron | 30.0% |
| !!! | TTTTTATTTTCTGGTGGTTC+TGG | - | chr1.1:51640119-51640138 | MS.gene89579:intron | 30.0% |
| AAACACTTGACTTCTCTTGT+TGG | + | chr1.1:51641569-51641588 | None:intergenic | 35.0% | |
| AAATAAGAACCTTACAGGCA+CGG | - | chr1.1:51643259-51643278 | MS.gene89579:intron | 35.0% | |
| AGAATCTTGTCTAACATGTG+AGG | - | chr1.1:51641725-51641744 | MS.gene89579:intron | 35.0% | |
| AGACAAGTATAACACATGGT+AGG | - | chr1.1:51641096-51641115 | MS.gene89579:CDS | 35.0% | |
| AGCGTAAGTCATTGAACTAA+AGG | + | chr1.1:51642383-51642402 | None:intergenic | 35.0% | |
| AGGGAAAATAAGAACCTTAC+AGG | - | chr1.1:51643254-51643273 | MS.gene89579:intron | 35.0% | |
| ATCATCATAAGTCCTATGTC+TGG | + | chr1.1:51644945-51644964 | None:intergenic | 35.0% | |
| ATGCAATAGTGCTCAATAAC+TGG | + | chr1.1:51643749-51643768 | None:intergenic | 35.0% | |
| ATGCCGAAGACTCATTATAA+TGG | + | chr1.1:51642138-51642157 | None:intergenic | 35.0% | |
| ATGGCATAACAGCCTATTAA+AGG | + | chr1.1:51643101-51643120 | None:intergenic | 35.0% | |
| ATGTTCTTACTAGCATATCC+AGG | - | chr1.1:51641157-51641176 | MS.gene89579:CDS | 35.0% | |
| ATTGAACCCACAATAGACAA+AGG | + | chr1.1:51640977-51640996 | None:intergenic | 35.0% | |
| CAACACAATTCAACTCGATA+TGG | - | chr1.1:51645388-51645407 | MS.gene89579:intron | 35.0% | |
| CAGTTGAATGCAGGAAATAT+AGG | + | chr1.1:51643842-51643861 | None:intergenic | 35.0% | |
| CATAAAGCACAAAAGATTCC+AGG | - | chr1.1:51644635-51644654 | MS.gene89579:intron | 35.0% | |
| CATATTAATGCCACAACACA+AGG | - | chr1.1:51641387-51641406 | MS.gene89579:intron | 35.0% | |
| CATGCGATATCATTTATCGA+AGG | - | chr1.1:51640205-51640224 | MS.gene89579:intron | 35.0% | |
| CATTCAACTGTTAGCACTTA+GGG | - | chr1.1:51643852-51643871 | MS.gene89579:intron | 35.0% | |
| CCAACTCAACATTATACTCA+AGG | + | chr1.1:51642471-51642490 | None:intergenic | 35.0% | |
| CCTTGAGTATAATGTTGAGT+TGG | - | chr1.1:51642468-51642487 | MS.gene89579:CDS | 35.0% | |
| CTGTATATGATTCTTCAAGG+AGG | - | chr1.1:51640564-51640583 | MS.gene89579:CDS | 35.0% | |
| CTTCTCGAATAAAAAGGTCT+CGG | + | chr1.1:51644335-51644354 | None:intergenic | 35.0% | |
| CTTGGTATGATAGATTCAAG+GGG | + | chr1.1:51641426-51641445 | None:intergenic | 35.0% | |
| GAAAAACTCAAGGACAAACA+TGG | + | chr1.1:51642220-51642239 | None:intergenic | 35.0% | |
| GAAGTATGATACAAACTCAG+AGG | + | chr1.1:51644250-51644269 | None:intergenic | 35.0% | |
| GACAAGTATAACACATGGTA+GGG | - | chr1.1:51641097-51641116 | MS.gene89579:CDS | 35.0% | |
| GAGTACTCTTGAAAAACTCA+AGG | + | chr1.1:51642230-51642249 | None:intergenic | 35.0% | |
| GCTTGGTATGATAGATTCAA+GGG | + | chr1.1:51641427-51641446 | None:intergenic | 35.0% | |
| GGATACAAACGGTTAAGTTT+AGG | + | chr1.1:51642669-51642688 | None:intergenic | 35.0% | |
| GGTATGACCTGAATATTAAG+AGG | - | chr1.1:51641350-51641369 | MS.gene89579:intron | 35.0% | |
| GTGGAAAGTTTAAACTTGGA+AGG | - | chr1.1:51639825-51639844 | MS.gene89579:CDS | 35.0% | |
| GTTGAATACATGCATTCAAG+AGG | - | chr1.1:51640844-51640863 | MS.gene89579:intron | 35.0% | |
| TAATATACAAACTGGAGAGG+AGG | - | chr1.1:51640006-51640025 | MS.gene89579:CDS | 35.0% | |
| TACTAATTGTGTGATTGTGG+TGG | - | chr1.1:51643415-51643434 | MS.gene89579:intron | 35.0% | |
| TATTAAGAGGGGAATATTGG+AGG | - | chr1.1:51641363-51641382 | MS.gene89579:intron | 35.0% | |
| TGAGATCAATGGGAATTTGT+GGG | + | chr1.1:51643199-51643218 | None:intergenic | 35.0% | |
| TGCCGAAGACTCATTATAAT+GGG | + | chr1.1:51642137-51642156 | None:intergenic | 35.0% | |
| TGCTTGATTGCACTATGTAA+CGG | + | chr1.1:51641946-51641965 | None:intergenic | 35.0% | |
| TGGCATAACAGCCTATTAAA+GGG | + | chr1.1:51643100-51643119 | None:intergenic | 35.0% | |
| TTGAGATCAATGGGAATTTG+TGG | + | chr1.1:51643200-51643219 | None:intergenic | 35.0% | |
| ! | AAAGCCAGACAATTTTCTGA+TGG | - | chr1.1:51640885-51640904 | MS.gene89579:intron | 35.0% |
| ! | AAGCCAGACAATTTTCTGAT+GGG | - | chr1.1:51640886-51640905 | MS.gene89579:intron | 35.0% |
| ! | ACATAGGACTTATGATGATG+TGG | - | chr1.1:51644946-51644965 | MS.gene89579:intron | 35.0% |
| ! | CAATTGGTTTCTTTAAGGGT+GGG | - | chr1.1:51642729-51642748 | MS.gene89579:intron | 35.0% |
| ! | CATTTTATCGTGTTAACGCT+AGG | + | chr1.1:51642643-51642662 | None:intergenic | 35.0% |
| ! | CGGTAAGTGATATTTTATGC+TGG | - | chr1.1:51643316-51643335 | MS.gene89579:intron | 35.0% |
| ! | GTTAACTTTTGGTCAATAGG+TGG | - | chr1.1:51640253-51640272 | MS.gene89579:intron | 35.0% |
| ! | TAGAGATGAGAATTTTGCAG+GGG | - | chr1.1:51641589-51641608 | MS.gene89579:intron | 35.0% |
| ! | TCATTTTGTAGTCTCCTTGT+TGG | - | chr1.1:51642700-51642719 | MS.gene89579:intron | 35.0% |
| ! | TGTTTTTCCTACTCTCTCTT+GGG | + | chr1.1:51641685-51641704 | None:intergenic | 35.0% |
| ! | TTCAAGTGAGTTGGATGAAA+TGG | - | chr1.1:51641481-51641500 | MS.gene89579:intron | 35.0% |
| ! | TTTGACATGTGCACACATTT+TGG | - | chr1.1:51642513-51642532 | MS.gene89579:CDS | 35.0% |
| ! | TTTTCTGTCACAGCACATAT+TGG | + | chr1.1:51644704-51644723 | None:intergenic | 35.0% |
| !! | AATTGTCTGGCTTTATGTCT+CGG | + | chr1.1:51640879-51640898 | None:intergenic | 35.0% |
| !! | ATGCTGGTTTGTTACTTTCT+CGG | - | chr1.1:51643332-51643351 | MS.gene89579:intron | 35.0% |
| !! | ATTTGGCTTTGATGATACCA+TGG | + | chr1.1:51645431-51645450 | None:intergenic | 35.0% |
| !! | ATTTTCTTGTGTGGGTTGTA+TGG | - | chr1.1:51641197-51641216 | MS.gene89579:intron | 35.0% |
| !! | CATATCGAGTTGAATTGTGT+TGG | + | chr1.1:51645390-51645409 | None:intergenic | 35.0% |
| !! | TCTTTTGGAGAGCTTTACTT+AGG | - | chr1.1:51639863-51639882 | MS.gene89579:CDS | 35.0% |
| !! | TGAGAATGTTGTTTCCTGTT+TGG | - | chr1.1:51645023-51645042 | MS.gene89579:intron | 35.0% |
| !! | TTTTAGGAGGGAGCAATATT+AGG | - | chr1.1:51642988-51643007 | MS.gene89579:intron | 35.0% |
| !!! | GATCCCTATATTTTTTCGCA+AGG | + | chr1.1:51642921-51642940 | None:intergenic | 35.0% |
| !!! | GTGGTTCTGGATGTATTTTT+AGG | - | chr1.1:51640132-51640151 | MS.gene89579:intron | 35.0% |
| AACGTCTTGTCAAACCAAAC+AGG | + | chr1.1:51645040-51645059 | None:intergenic | 40.0% | |
| AAGTGCTAACAGTTGAATGC+AGG | + | chr1.1:51643851-51643870 | None:intergenic | 40.0% | |
| ACCAATTGCTTTGACCAACA+AGG | + | chr1.1:51642717-51642736 | None:intergenic | 40.0% | |
| AGGTCATACCATATCCAATG+TGG | + | chr1.1:51641340-51641359 | None:intergenic | 40.0% | |
| AGTAAGTCTGTCTGTCAAGT+TGG | - | chr1.1:51640737-51640756 | MS.gene89579:intron | 40.0% | |
| ATAGGGATCTTCAGACTCAT+AGG | - | chr1.1:51642932-51642951 | MS.gene89579:intron | 40.0% | |
| ATCGTAGGATTCAAGTGAGT+TGG | - | chr1.1:51641472-51641491 | MS.gene89579:intron | 40.0% | |
| ATGATTCTTCAAGGAGGAAC+TGG | - | chr1.1:51640570-51640589 | MS.gene89579:intron | 40.0% | |
| CACACTCTGTATCTCATTTC+AGG | - | chr1.1:51642876-51642895 | MS.gene89579:intron | 40.0% | |
| CCGACTTCAAAGTGAATTTC+CGG | + | chr1.1:51640695-51640714 | None:intergenic | 40.0% | |
| CGATAAAATCAGTGAGACGA+AGG | - | chr1.1:51643631-51643650 | MS.gene89579:intron | 40.0% | |
| CGCATTTGCATCCCTTTAAT+AGG | - | chr1.1:51643086-51643105 | MS.gene89579:intron | 40.0% | |
| CGCTTGGTATGATAGATTCA+AGG | + | chr1.1:51641428-51641447 | None:intergenic | 40.0% | |
| CGGCCTTGCGAAAAAATATA+GGG | - | chr1.1:51642915-51642934 | MS.gene89579:intron | 40.0% | |
| GAGATTCGGGAGAAATTATC+TGG | - | chr1.1:51644854-51644873 | MS.gene89579:CDS | 40.0% | |
| GATCACAAAACCAACCTGTA+CGG | + | chr1.1:51642964-51642983 | None:intergenic | 40.0% | |
| GATCCCTGCACAACAAATTT+AGG | - | chr1.1:51642430-51642449 | MS.gene89579:intron | 40.0% | |
| GCAAAATGACTGGTGAACTT+AGG | + | chr1.1:51642283-51642302 | None:intergenic | 40.0% | |
| GCATGCAAGTGACTTTATGT+TGG | - | chr1.1:51642535-51642554 | MS.gene89579:intron | 40.0% | |
| GCATTCAACTGTTAGCACTT+AGG | - | chr1.1:51643851-51643870 | MS.gene89579:intron | 40.0% | |
| GCTTGTTTCGTATCATACAC+AGG | + | chr1.1:51645523-51645542 | None:intergenic | 40.0% | |
| GGGAAGACTGAAAAAGGAAA+AGG | + | chr1.1:51643573-51643592 | None:intergenic | 40.0% | |
| GGTCATACCATATCCAATGT+GGG | + | chr1.1:51641339-51641358 | None:intergenic | 40.0% | |
| GGTGGGAATTTCTTAATCGT+TGG | - | chr1.1:51642746-51642765 | MS.gene89579:intron | 40.0% | |
| GGTTCCTCTCAAAAGTTTGA+AGG | - | chr1.1:51641533-51641552 | MS.gene89579:intron | 40.0% | |
| TCAAGGACAAACATGGAAAC+AGG | + | chr1.1:51642213-51642232 | None:intergenic | 40.0% | |
| TCATCAAAGCCAAATTCCTC+AGG | - | chr1.1:51645436-51645455 | MS.gene89579:intron | 40.0% | |
| TCCTTGTTGGTCAAAGCAAT+TGG | - | chr1.1:51642713-51642732 | MS.gene89579:intron | 40.0% | |
| TCGGCCTTGCGAAAAAATAT+AGG | - | chr1.1:51642914-51642933 | MS.gene89579:intron | 40.0% | |
| TGTAAATTCGTAGTCCTGAC+AGG | + | chr1.1:51641661-51641680 | None:intergenic | 40.0% | |
| TTCTTACTAGCATATCCAGG+AGG | - | chr1.1:51641160-51641179 | MS.gene89579:CDS | 40.0% | |
| TTGGTCAATAGGTGGATGAT+TGG | - | chr1.1:51640261-51640280 | MS.gene89579:intron | 40.0% | |
| TTTACAACCCAAGAGAGAGT+AGG | - | chr1.1:51641675-51641694 | MS.gene89579:intron | 40.0% | |
| TTTCAGTTGGGAGAGAGATT+CGG | - | chr1.1:51644840-51644859 | MS.gene89579:CDS | 40.0% | |
| TTTGACTCATAGTGAAGCTG+TGG | + | chr1.1:51640543-51640562 | None:intergenic | 40.0% | |
| ! | AAAATTGGGAGTGGCTCTTT+TGG | - | chr1.1:51639848-51639867 | MS.gene89579:CDS | 40.0% |
| ! | AACTCCAAACCATTTGAGGT+GGG | + | chr1.1:51640601-51640620 | None:intergenic | 40.0% |
| ! | AAGCAACTTTTGCTCGCAAT+GGG | - | chr1.1:51645539-51645558 | MS.gene89579:intron | 40.0% |
| ! | ACATTTGTTGAGTCCCACAT+TGG | - | chr1.1:51641323-51641342 | MS.gene89579:intron | 40.0% |
| ! | CGAGACCTTTTTATTCGAGA+AGG | - | chr1.1:51644333-51644352 | MS.gene89579:intron | 40.0% |
| ! | CTCAAATGGTTTGGAGTTGA+GGG | - | chr1.1:51640603-51640622 | MS.gene89579:intron | 40.0% |
| ! | CTGTTGCTCAGTTCTTTTCA+AGG | + | chr1.1:51641792-51641811 | None:intergenic | 40.0% |
| ! | GCAATTGGTTTCTTTAAGGG+TGG | - | chr1.1:51642728-51642747 | MS.gene89579:intron | 40.0% |
| ! | GTGTTTTTCCTACTCTCTCT+TGG | + | chr1.1:51641686-51641705 | None:intergenic | 40.0% |
| ! | TGTGTTTGGATGGAGTGTTT+AGG | - | chr1.1:51643875-51643894 | MS.gene89579:intron | 40.0% |
| ! | TTGAAGTATCCACAGAGTAG+TGG | - | chr1.1:51644481-51644500 | MS.gene89579:intron | 40.0% |
| ! | TTTGGATGGAGTGTTTAGGA+GGG | - | chr1.1:51643879-51643898 | MS.gene89579:intron | 40.0% |
| ! | TTTTTGTTGGTCGCTTACTG+TGG | - | chr1.1:51644555-51644574 | MS.gene89579:CDS | 40.0% |
| !! | ATCACTTACCGATTCCAAGA+TGG | + | chr1.1:51643307-51643326 | None:intergenic | 40.0% |
| !! | CCGGAAATTCACTTTGAAGT+CGG | - | chr1.1:51640692-51640711 | MS.gene89579:intron | 40.0% |
| !! | GAAGGTATCAACTCCAATAG+AGG | - | chr1.1:51643649-51643668 | MS.gene89579:intron | 40.0% |
| !! | GGATTTTAAAGGAAAGGTCC+AGG | + | chr1.1:51642262-51642281 | None:intergenic | 40.0% |
| !! | GGTTTGTTACTTTCTCGGTT+AGG | - | chr1.1:51643337-51643356 | MS.gene89579:intron | 40.0% |
| !! | TCACTTACCGATTCCAAGAT+GGG | + | chr1.1:51643306-51643325 | None:intergenic | 40.0% |
| !!! | TTTCCTTTTTCAGTCTTCCC+TGG | - | chr1.1:51643573-51643592 | MS.gene89579:intron | 40.0% |
| AAACTGTGCACCTTGTGTTG+TGG | + | chr1.1:51641400-51641419 | None:intergenic | 45.0% | |
| AAGCAGTTCAAGAAGAGCCA+TGG | - | chr1.1:51645411-51645430 | MS.gene89579:CDS | 45.0% | |
| AATTCCTCAGGTGACCATTC+TGG | - | chr1.1:51645448-51645467 | MS.gene89579:intron | 45.0% | |
| ACAAAGTCGAAGGGATGATC+TGG | - | chr1.1:51643442-51643461 | MS.gene89579:intron | 45.0% | |
| AGGCCCATCAGAAAATTGTC+TGG | + | chr1.1:51640892-51640911 | None:intergenic | 45.0% | |
| ATTCCCCACCTCAAATGGTT+TGG | - | chr1.1:51640594-51640613 | MS.gene89579:intron | 45.0% | |
| CAACACAAGGTGCACAGTTT+CGG | - | chr1.1:51641400-51641419 | MS.gene89579:intron | 45.0% | |
| CAACTCCAAACCATTTGAGG+TGG | + | chr1.1:51640602-51640621 | None:intergenic | 45.0% | |
| CATACCAAGCGACGAAGAAA+TGG | - | chr1.1:51641437-51641456 | MS.gene89579:intron | 45.0% | |
| CCTCAACTCCAAACCATTTG+AGG | + | chr1.1:51640605-51640624 | None:intergenic | 45.0% | |
| CGCATGCATGCTCAATTTCA+TGG | + | chr1.1:51640191-51640210 | None:intergenic | 45.0% | |
| CTTGGAAGGAAAATTGGGAG+TGG | - | chr1.1:51639839-51639858 | MS.gene89579:CDS | 45.0% | |
| GAATGGTCACCTGAGGAATT+TGG | + | chr1.1:51645448-51645467 | None:intergenic | 45.0% | |
| GAGACAGAAGGGAAATGAAG+AGG | + | chr1.1:51644149-51644168 | None:intergenic | 45.0% | |
| GAGGAGTCTAATAGAAACCC+CGG | - | chr1.1:51641744-51641763 | MS.gene89579:intron | 45.0% | |
| GCAAATTCTAGCCCTCATCA+CGG | - | chr1.1:51644911-51644930 | MS.gene89579:intron | 45.0% | |
| GCAATGGAATAACACCTGTC+AGG | - | chr1.1:51641644-51641663 | MS.gene89579:intron | 45.0% | |
| GTCAACACCCATCTTGGAAT+CGG | - | chr1.1:51643296-51643315 | MS.gene89579:intron | 45.0% | |
| GTTAGCACTTAGGGTGTGTT+TGG | - | chr1.1:51643861-51643880 | MS.gene89579:intron | 45.0% | |
| GTTGAGTCCCACATTGGATA+TGG | - | chr1.1:51641329-51641348 | MS.gene89579:intron | 45.0% | |
| TATACAAACTGGAGAGGAGG+TGG | - | chr1.1:51640009-51640028 | MS.gene89579:CDS | 45.0% | |
| TATATGACAGCGTTACCTCC+TGG | + | chr1.1:51641178-51641197 | None:intergenic | 45.0% | |
| TGGTTGTTGTAACGACAGCA+TGG | - | chr1.1:51644575-51644594 | MS.gene89579:CDS | 45.0% | |
| TGTCCTCAAACCTCAACGAA+CGG | + | chr1.1:51644281-51644300 | None:intergenic | 45.0% | |
| TTCAGTTGGGAGAGAGATTC+GGG | - | chr1.1:51644841-51644860 | MS.gene89579:CDS | 45.0% | |
| TTCTCCATTTCTTCGTCGCT+TGG | + | chr1.1:51641444-51641463 | None:intergenic | 45.0% | |
| TTGCCAGGGAAGACTGAAAA+AGG | + | chr1.1:51643579-51643598 | None:intergenic | 45.0% | |
| TTGTGCAGGGATCTATGCTA+TGG | + | chr1.1:51642423-51642442 | None:intergenic | 45.0% | |
| ! | ACTCCAAACCATTTGAGGTG+GGG | + | chr1.1:51640600-51640619 | None:intergenic | 45.0% |
| ! | AGAATTTTGCAGGGGATGAG+TGG | - | chr1.1:51641597-51641616 | MS.gene89579:intron | 45.0% |
| ! | AGAGTACTCTCACTTTGTCC+TGG | - | chr1.1:51642241-51642260 | MS.gene89579:intron | 45.0% |
| ! | AGGGATGATCTGGAATCTCT+TGG | - | chr1.1:51643452-51643471 | MS.gene89579:intron | 45.0% |
| ! | CAAGCAACTTTTGCTCGCAA+TGG | - | chr1.1:51645538-51645557 | MS.gene89579:intron | 45.0% |
| ! | CCTCAAATGGTTTGGAGTTG+AGG | - | chr1.1:51640602-51640621 | MS.gene89579:intron | 45.0% |
| ! | GTTTGGATGGAGTGTTTAGG+AGG | - | chr1.1:51643878-51643897 | MS.gene89579:intron | 45.0% |
| ! | TGAGGGAGAGTACAATGTCA+TGG | - | chr1.1:51640620-51640639 | MS.gene89579:intron | 45.0% |
| ! | TTGGATGGAGTGTTTAGGAG+GGG | - | chr1.1:51643880-51643899 | MS.gene89579:intron | 45.0% |
| ! | TTGTTGAAGCATTCACCCAG+AGG | - | chr1.1:51644882-51644901 | MS.gene89579:CDS | 45.0% |
| !! | CAGGTGTATGCCATTGACTT+CGG | - | chr1.1:51642895-51642914 | MS.gene89579:intron | 45.0% |
| !! | CTTGATTTGCTTTACGTCCG+AGG | + | chr1.1:51640912-51640931 | None:intergenic | 45.0% |
| !! | GACAATTTTCTGATGGGCCT+CGG | - | chr1.1:51640892-51640911 | MS.gene89579:intron | 45.0% |
| !! | TTTTTCAGTCTTCCCTGGCA+AGG | - | chr1.1:51643578-51643597 | MS.gene89579:intron | 45.0% |
| !! | AATGAATTAAAATTAAAAAA+AGG | + | chr1.1:51639906-51639925 | None:intergenic | 5.0% |
| !! | ATGAATTAAAATTAAAAAAA+GGG | + | chr1.1:51639905-51639924 | None:intergenic | 5.0% |
| !!! | TAATTTTAATTCATTTATTT+GGG | - | chr1.1:51639911-51639930 | MS.gene89579:CDS | 5.0% |
| !!! | TTAATTTTAATTCATTTATT+TGG | - | chr1.1:51639910-51639929 | MS.gene89579:CDS | 5.0% |
| ACCTCAACGAACGGCAATAG+TGG | + | chr1.1:51644272-51644291 | None:intergenic | 50.0% | |
| ACGGTGAACACACCAGACAT+AGG | - | chr1.1:51644930-51644949 | MS.gene89579:intron | 50.0% | |
| AGAATTTGCGCGGTTCCTCT+GGG | + | chr1.1:51644900-51644919 | None:intergenic | 50.0% | |
| AGCTCCTCAGAGGATCATCA+CGG | + | chr1.1:51645579-51645598 | None:intergenic | 50.0% | |
| ATAGTGAAGCTGTGGATGCC+TGG | + | chr1.1:51640535-51640554 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr1.1:51644089-51644108 | None:intergenic | 50.0% | |
| CAAGCAACTGCAAGCTAGTC+AGG | - | chr1.1:51641960-51641979 | MS.gene89579:CDS | 50.0% | |
| CAGCTGAAAGACAACAGACC+TGG | + | chr1.1:51644656-51644675 | None:intergenic | 50.0% | |
| CGGTGGTTGTGAATTGACGT+GGG | - | chr1.1:51644409-51644428 | MS.gene89579:intron | 50.0% | |
| CTCATAGGCACATACCGTAC+AGG | - | chr1.1:51642947-51642966 | MS.gene89579:intron | 50.0% | |
| CTGGAATTCCCCACCTCAAA+TGG | - | chr1.1:51640589-51640608 | MS.gene89579:intron | 50.0% | |
| CTGTCACAGCACATATTGGC+AGG | + | chr1.1:51644700-51644719 | None:intergenic | 50.0% | |
| GATGAGGGCTAGAATTTGCG+CGG | + | chr1.1:51644910-51644929 | None:intergenic | 50.0% | |
| GCAAGTGTCAACACCCATCT+TGG | - | chr1.1:51643290-51643309 | MS.gene89579:intron | 50.0% | |
| GCACTTAGGGTGTGTTTGGA+TGG | - | chr1.1:51643865-51643884 | MS.gene89579:intron | 50.0% | |
| GGTGGCAGAACAAAGTCGAA+GGG | - | chr1.1:51643433-51643452 | MS.gene89579:intron | 50.0% | |
| GTCATGGTCATCGACCTTCT+TGG | - | chr1.1:51640636-51640655 | MS.gene89579:intron | 50.0% | |
| TAGAATTTGCGCGGTTCCTC+TGG | + | chr1.1:51644901-51644920 | None:intergenic | 50.0% | |
| TAGGCACATACCGTACAGGT+TGG | - | chr1.1:51642951-51642970 | MS.gene89579:intron | 50.0% | |
| TCCACTATTGCCGTTCGTTG+AGG | - | chr1.1:51644268-51644287 | MS.gene89579:intron | 50.0% | |
| TCCAGGAATCTGTGAAGACC+AGG | - | chr1.1:51640514-51640533 | MS.gene89579:CDS | 50.0% | |
| TCGGTGGTTGTGAATTGACG+TGG | - | chr1.1:51644408-51644427 | MS.gene89579:intron | 50.0% | |
| TGAACTCTATGTGCGCCAGA+TGG | + | chr1.1:51645499-51645518 | None:intergenic | 50.0% | |
| TGGTGGCAGAACAAAGTCGA+AGG | - | chr1.1:51643432-51643451 | MS.gene89579:intron | 50.0% | |
| TGGTGTGTTCACCGTGATGA+GGG | + | chr1.1:51644925-51644944 | None:intergenic | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | + | chr1.1:51644088-51644107 | None:intergenic | 50.0% | |
| TTGCCGTTCGTTGAGGTTTG+AGG | - | chr1.1:51644275-51644294 | MS.gene89579:intron | 50.0% | |
| TTGTAACGACAGCATGGCAC+TGG | - | chr1.1:51644581-51644600 | MS.gene89579:intron | 50.0% | |
| TTTCGCAAGGCCGAAGTCAA+TGG | + | chr1.1:51642908-51642927 | None:intergenic | 50.0% | |
| ! | ATGGAGTGTTTAGGAGGGGA+GGG | - | chr1.1:51643884-51643903 | MS.gene89579:intron | 50.0% |
| ! | CAACGGCGTCATTTGATTCG+TGG | - | chr1.1:51642042-51642061 | MS.gene89579:intron | 50.0% |
| ! | CACTGTATGGTTGGTATGCC+AGG | + | chr1.1:51642581-51642600 | None:intergenic | 50.0% |
| ! | GCTTTGAGCTCCTCACTATC+AGG | - | chr1.1:51645596-51645615 | MS.gene89579:CDS | 50.0% |
| AGAGGAGGTGGCTGTTAAGC+TGG | - | chr1.1:51640021-51640040 | MS.gene89579:CDS | 55.0% | |
| AGGAGCTCAAAGCTCCTCAG+AGG | + | chr1.1:51645589-51645608 | None:intergenic | 55.0% | |
| AGGTGACCATTCTGGCAGGA+TGG | - | chr1.1:51645456-51645475 | MS.gene89579:intron | 55.0% | |
| CTAGAGCTGCCACTACTCTG+TGG | + | chr1.1:51644493-51644512 | None:intergenic | 55.0% | |
| CTCTATGTGCGCCAGATGGA+CGG | + | chr1.1:51645495-51645514 | None:intergenic | 55.0% | |
| CTGGTGTGTTCACCGTGATG+AGG | + | chr1.1:51644926-51644945 | None:intergenic | 55.0% | |
| CTTCCAGACTGGGTCCAAGA+AGG | + | chr1.1:51640653-51640672 | None:intergenic | 55.0% | |
| GCTCGCAATGGGTCTATGAG+AGG | - | chr1.1:51645550-51645569 | MS.gene89579:CDS | 55.0% | |
| TCCTCAGAGGATCATCACGG+TGG | + | chr1.1:51645576-51645595 | None:intergenic | 55.0% | |
| TCTTCCCTGGCAAGGACTGA+GGG | - | chr1.1:51643586-51643605 | MS.gene89579:intron | 55.0% | |
| TGTTTAGGAGGGGAGGGGAA+GGG | - | chr1.1:51643890-51643909 | MS.gene89579:intron | 55.0% | |
| TTGTGGCCATCCTGCCAGAA+TGG | + | chr1.1:51645465-51645484 | None:intergenic | 55.0% | |
| ! | CAGAGTAGTGGCAGCTCTAG+AGG | - | chr1.1:51644493-51644512 | MS.gene89579:intron | 55.0% |
| ! | GATGGAGTGTTTAGGAGGGG+AGG | - | chr1.1:51643883-51643902 | MS.gene89579:intron | 55.0% |
| ! | GCCTGGTCTTCACAGATTCC+TGG | + | chr1.1:51640518-51640537 | None:intergenic | 55.0% |
| ! | TGGAGTGTTTAGGAGGGGAG+GGG | - | chr1.1:51643885-51643904 | MS.gene89579:intron | 55.0% |
| !! | GACGTGGGCATTGATCATGC+AGG | - | chr1.1:51644424-51644443 | MS.gene89579:intron | 55.0% |
| !! | GTAGTGGCAGCTCTAGAGGA+CGG | - | chr1.1:51644497-51644516 | MS.gene89579:intron | 55.0% |
| !! | TAGTGGCAGCTCTAGAGGAC+GGG | - | chr1.1:51644498-51644517 | MS.gene89579:intron | 55.0% |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr1.1:51644085-51644104 | None:intergenic | 60.0% | |
| CATAGCGTGCCGTGCCTGTA+AGG | + | chr1.1:51643271-51643290 | None:intergenic | 60.0% | |
| CCTCAGGTGACCATTCTGGC+AGG | - | chr1.1:51645452-51645471 | MS.gene89579:intron | 60.0% | |
| CCTGCCAGAATGGTCACCTG+AGG | + | chr1.1:51645455-51645474 | None:intergenic | 60.0% | |
| CGACCTTCTTGGACCCAGTC+TGG | - | chr1.1:51640647-51640666 | MS.gene89579:intron | 60.0% | |
| CTGGCAGGATGGCCACAAGT+GGG | - | chr1.1:51645467-51645486 | MS.gene89579:intron | 60.0% | |
| GCCACCGTGATGATCCTCTG+AGG | - | chr1.1:51645572-51645591 | MS.gene89579:CDS | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr1.1:51644084-51644103 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr1.1:51644083-51644102 | None:intergenic | 60.0% | |
| GTCTTCCCTGGCAAGGACTG+AGG | - | chr1.1:51643585-51643604 | MS.gene89579:intron | 60.0% | |
| GTGTTTAGGAGGGGAGGGGA+AGG | - | chr1.1:51643889-51643908 | MS.gene89579:intron | 60.0% | |
| TCTGGCAGGATGGCCACAAG+TGG | - | chr1.1:51645466-51645485 | MS.gene89579:intron | 60.0% | |
| TGGCAGGATGGCCACAAGTG+GGG | - | chr1.1:51645468-51645487 | MS.gene89579:intron | 60.0% | |
| !! | ACGACAGCATGGCACTGGCA+AGG | - | chr1.1:51644586-51644605 | MS.gene89579:intron | 60.0% |
| ACAAGTGGGGGCCGTCCATC+TGG | - | chr1.1:51645481-51645500 | MS.gene89579:intron | 65.0% | |
| AGATGGACGGCCCCCACTTG+TGG | + | chr1.1:51645482-51645501 | None:intergenic | 65.0% | |
| CCAGCCCTCAGTCCTTGCCA+GGG | + | chr1.1:51643593-51643612 | None:intergenic | 65.0% | |
| GGCAGGATGGCCACAAGTGG+GGG | - | chr1.1:51645469-51645488 | MS.gene89579:intron | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr1.1:51644079-51644098 | None:intergenic | 65.0% | |
| TAGGAGGGGAGGGGAAGGGA+GGG | - | chr1.1:51643894-51643913 | MS.gene89579:intron | 65.0% | |
| TCCAGCCCTCAGTCCTTGCC+AGG | + | chr1.1:51643594-51643613 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr1.1:51644080-51644099 | None:intergenic | 65.0% | |
| TTAGGAGGGGAGGGGAAGGG+AGG | - | chr1.1:51643893-51643912 | MS.gene89579:intron | 65.0% | |
| AGGAGGGGAGGGGAAGGGAG+GGG | - | chr1.1:51643895-51643914 | MS.gene89579:intron | 70.0% | |
| CCCTGGCAAGGACTGAGGGC+TGG | - | chr1.1:51643590-51643609 | MS.gene89579:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 51639809 | 51645624 | 51639809 | ID=MS.gene89579 |
| chr1.1 | mRNA | 51639809 | 51645624 | 51639809 | ID=MS.gene89579.t1;Parent=MS.gene89579 |
| chr1.1 | exon | 51645549 | 51645624 | 51645549 | ID=MS.gene89579.t1.exon1;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51645549 | 51645624 | 51645549 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51645391 | 51645431 | 51645391 | ID=MS.gene89579.t1.exon2;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51645391 | 51645431 | 51645391 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51644696 | 51644914 | 51644696 | ID=MS.gene89579.t1.exon3;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51644696 | 51644914 | 51644696 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51644503 | 51644598 | 51644503 | ID=MS.gene89579.t1.exon4;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51644503 | 51644598 | 51644503 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51642465 | 51642535 | 51642465 | ID=MS.gene89579.t1.exon5;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51642465 | 51642535 | 51642465 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51642116 | 51642177 | 51642116 | ID=MS.gene89579.t1.exon6;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51642116 | 51642177 | 51642116 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51641929 | 51641992 | 51641929 | ID=MS.gene89579.t1.exon7;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51641929 | 51641992 | 51641929 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51641763 | 51641847 | 51641763 | ID=MS.gene89579.t1.exon8;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51641763 | 51641847 | 51641763 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51641079 | 51641205 | 51641079 | ID=MS.gene89579.t1.exon9;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51641079 | 51641205 | 51641079 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51640914 | 51640987 | 51640914 | ID=MS.gene89579.t1.exon10;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51640914 | 51640987 | 51640914 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51640777 | 51640840 | 51640777 | ID=MS.gene89579.t1.exon11;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51640777 | 51640840 | 51640777 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51640466 | 51640587 | 51640466 | ID=MS.gene89579.t1.exon12;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51640466 | 51640587 | 51640466 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| chr1.1 | exon | 51639809 | 51640054 | 51639809 | ID=MS.gene89579.t1.exon13;Parent=MS.gene89579.t1 |
| chr1.1 | CDS | 51639809 | 51640054 | 51639809 | ID=cds.MS.gene89579.t1;Parent=MS.gene89579.t1 |
| Gene Sequence |
| Protein sequence |
