Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89659.t1 | XP_003629314.1 | 94.1 | 674 | 32 | 3 | 1 | 673 | 1 | 667 | 0.00E+00 | 1152.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89659.t1 | B7FF18 | 94.1 | 674 | 32 | 3 | 1 | 673 | 1 | 667 | 0.0e+00 | 1152.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050551 | MS.gene89659 | 0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene89659 | 0.802291 | 6.02E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene89659 | 0.800691 | 1.28E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89659.t1 | MTR_8g075770 | 97.329 | 674 | 10 | 3 | 1 | 673 | 1 | 667 | 0.0 | 1324 |
| MS.gene89659.t1 | MTR_5g022240 | 71.014 | 690 | 180 | 8 | 1 | 673 | 1 | 687 | 0.0 | 936 |
| MS.gene89659.t1 | MTR_4g073830 | 60.358 | 671 | 246 | 6 | 1 | 669 | 1 | 653 | 0.0 | 809 |
| MS.gene89659.t1 | MTR_5g033190 | 36.556 | 662 | 338 | 11 | 9 | 662 | 14 | 601 | 1.59e-115 | 359 |
| MS.gene89659.t1 | MTR_0064s0050 | 57.143 | 217 | 91 | 2 | 1 | 216 | 1 | 216 | 6.22e-69 | 225 |
| MS.gene89659.t1 | MTR_0064s0010 | 54.808 | 208 | 92 | 2 | 1 | 207 | 1 | 207 | 1.10e-64 | 214 |
| MS.gene89659.t1 | MTR_1g046850 | 53.241 | 216 | 90 | 4 | 5 | 219 | 8 | 213 | 4.01e-62 | 211 |
| MS.gene89659.t1 | MTR_4g105110 | 39.689 | 257 | 151 | 4 | 408 | 662 | 328 | 582 | 3.60e-46 | 173 |
| MS.gene89659.t1 | MTR_4g105110 | 36.129 | 310 | 170 | 9 | 12 | 307 | 23 | 318 | 1.09e-39 | 154 |
| MS.gene89659.t1 | MTR_4g105110 | 39.689 | 257 | 151 | 4 | 408 | 662 | 329 | 583 | 4.10e-46 | 173 |
| MS.gene89659.t1 | MTR_4g105110 | 36.129 | 310 | 170 | 9 | 12 | 307 | 24 | 319 | 1.22e-39 | 154 |
| MS.gene89659.t1 | MTR_0116s0040 | 48.677 | 189 | 89 | 3 | 1 | 188 | 1 | 182 | 4.34e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89659.t1 | AT5G66200 | 68.107 | 671 | 188 | 7 | 1 | 668 | 1 | 648 | 0.0 | 877 |
| MS.gene89659.t1 | AT4G34940 | 64.948 | 679 | 213 | 7 | 1 | 669 | 1 | 664 | 0.0 | 850 |
| MS.gene89659.t1 | AT4G36030 | 60.088 | 679 | 251 | 10 | 1 | 669 | 1 | 669 | 0.0 | 750 |
| MS.gene89659.t1 | AT3G26600 | 34.709 | 654 | 342 | 10 | 21 | 662 | 23 | 603 | 2.09e-102 | 325 |
| MS.gene89659.t1 | AT3G26600 | 40.074 | 272 | 151 | 3 | 392 | 662 | 262 | 522 | 1.78e-47 | 176 |
| MS.gene89659.t1 | AT3G26600 | 43.814 | 194 | 101 | 3 | 21 | 206 | 23 | 216 | 4.92e-40 | 154 |
Find 144 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCGTTGACTTTGCATTTA+AGG | 0.041811 | 8.3:-27973645 | None:intergenic |
| TGCTTCAAATGAACCGATTT+TGG | 0.092510 | 8.3:+27973819 | MS.gene89659:CDS |
| CTTCTGCTGCTTTGCTTACT+TGG | 0.155557 | 8.3:-27973453 | None:intergenic |
| ATTCCTTGTATCAAGGTTAT+TGG | 0.217001 | 8.3:+27974960 | MS.gene89659:CDS |
| TGCAAAAGCAATTGGGTTAT+TGG | 0.224907 | 8.3:+27974029 | MS.gene89659:CDS |
| ATCTGATGCTGCTGCTTCTT+TGG | 0.233722 | 8.3:+27973894 | MS.gene89659:CDS |
| GGAGTTTGGCCAGGACATTC+AGG | 0.300641 | 8.3:+27974982 | MS.gene89659:CDS |
| ACTAGCAAAAGCTGAGATTC+TGG | 0.303673 | 8.3:+27975265 | MS.gene89659:CDS |
| AATGCCGATCTTCTCAATTC+AGG | 0.304005 | 8.3:-27974858 | None:intergenic |
| TCTCATCTTGAGAATTCAAT+TGG | 0.313541 | 8.3:+27973721 | MS.gene89659:CDS |
| AAGCAAGGCTATTCGTATTC+TGG | 0.315669 | 8.3:+27974603 | MS.gene89659:CDS |
| CAATGGCTGCGAAAGCTCTT+AGG | 0.319184 | 8.3:+27974682 | MS.gene89659:CDS |
| TTGCTCAGCATAATATTGTT+AGG | 0.320910 | 8.3:+27974205 | MS.gene89659:CDS |
| TATCAAGGTTATTGGGAGTT+TGG | 0.328721 | 8.3:+27974968 | MS.gene89659:CDS |
| TTCCTTGTATCAAGGTTATT+GGG | 0.333782 | 8.3:+27974961 | MS.gene89659:CDS |
| ATTAAGATGCAGCATCCTTT+AGG | 0.336683 | 8.3:+27974396 | MS.gene89659:CDS |
| TGCTTACTTGGTCAGCTAGT+TGG | 0.339375 | 8.3:-27973441 | None:intergenic |
| TATTGCCTTTGAAACTGTTC+AGG | 0.347039 | 8.3:+27974242 | MS.gene89659:CDS |
| ATCGGTTCATTTGAAGCAAT+TGG | 0.349857 | 8.3:-27973814 | None:intergenic |
| GCAAAAGCAATTGGGTTATT+GGG | 0.350394 | 8.3:+27974030 | MS.gene89659:CDS |
| TTGGTTCAGCTTGTGTATCT+AGG | 0.352205 | 8.3:+27975170 | MS.gene89659:CDS |
| GCAACTGAAACAAGGATAAT+TGG | 0.357865 | 8.3:+27975005 | MS.gene89659:CDS |
| ATTCAATTGGGGATGTTTCA+TGG | 0.361909 | 8.3:+27973734 | MS.gene89659:CDS |
| GAGAATGCTGCAAAAGCAAT+TGG | 0.362014 | 8.3:+27974021 | MS.gene89659:CDS |
| ATATGCAATTGTTAGTAATA+AGG | 0.366313 | 8.3:+27974275 | MS.gene89659:CDS |
| ACAACAGCTTGAACTTTCAT+AGG | 0.369367 | 8.3:-27974129 | None:intergenic |
| GCTTCATCATGAGCCATGTT+AGG | 0.369601 | 8.3:-27975314 | None:intergenic |
| CTCATCTTGAGAATTCAATT+GGG | 0.370800 | 8.3:+27973722 | MS.gene89659:CDS |
| TTCCCATTCCCATTCCCATT+TGG | 0.387109 | 8.3:-27974558 | None:intergenic |
| GCTTTACAAGCAGGAGTGTT+TGG | 0.388856 | 8.3:-27974885 | None:intergenic |
| TGGCACGTGCAACGCAATAT+AGG | 0.392263 | 8.3:-27975231 | None:intergenic |
| TGTAAGGCAATTATAAGCTT+TGG | 0.395487 | 8.3:+27975134 | MS.gene89659:CDS |
| TGGTTCAGCTTGTGTATCTA+GGG | 0.405199 | 8.3:+27975171 | MS.gene89659:CDS |
| TAAAGTTGTGGCAAGTACTA+TGG | 0.408206 | 8.3:+27974443 | MS.gene89659:CDS |
| ACTCAATTTACTCCCTTCAT+TGG | 0.408757 | 8.3:-27974499 | None:intergenic |
| TTTGCTAGTTCTTCACTGTC+TGG | 0.418688 | 8.3:-27975251 | None:intergenic |
| AGATTCTGGGAGTTCTTGAA+TGG | 0.421182 | 8.3:+27975279 | MS.gene89659:CDS |
| TTGAAAGAAGGTAAGAAAGA+AGG | 0.434332 | 8.3:+27973994 | MS.gene89659:CDS |
| AGTGAAGTATAATTCTGCTT+TGG | 0.436624 | 8.3:+27974800 | MS.gene89659:CDS |
| TGGGTTATTGGGTCGTGATC+CGG | 0.442718 | 8.3:+27974041 | MS.gene89659:CDS |
| GTAAGCAAAGCAGCAGAAGA+AGG | 0.443236 | 8.3:+27973457 | MS.gene89659:CDS |
| TTCCAAATGGGAATGGGAAT+GGG | 0.450491 | 8.3:+27974556 | MS.gene89659:CDS |
| GTAAAGCTCCAGCCTACTCT+TGG | 0.452894 | 8.3:-27975360 | None:intergenic |
| AGTTCAAGCTGTTGTAGCTT+GGG | 0.453281 | 8.3:+27974137 | MS.gene89659:CDS |
| GCTTGAGGATGCCGAGAGTA+AGG | 0.455737 | 8.3:+27974647 | MS.gene89659:CDS |
| ATTCCAAATGGGAATGGGAA+TGG | 0.457986 | 8.3:+27974555 | MS.gene89659:CDS |
| AGCTCTTAGGTATTTAGCTA+AGG | 0.459453 | 8.3:+27974695 | MS.gene89659:CDS |
| TTCGATTCATGCTGTTGTGT+TGG | 0.463321 | 8.3:+27974305 | MS.gene89659:CDS |
| GGAATACTAGCCACATGAAC+CGG | 0.467341 | 8.3:-27974537 | None:intergenic |
| AACAAGCAACAAACCAATGA+AGG | 0.467751 | 8.3:+27974486 | MS.gene89659:CDS |
| AAGGTAGCTATGAATGTCTT+GGG | 0.470872 | 8.3:+27973785 | MS.gene89659:CDS |
| TTCGCGAAGATTCTTAAAGA+AGG | 0.472392 | 8.3:+27974105 | MS.gene89659:CDS |
| TCCCAAATTAAACCCAAAAT+CGG | 0.473660 | 8.3:-27973832 | None:intergenic |
| TTCAGTTGCCCTGAATGTCC+TGG | 0.478968 | 8.3:-27974991 | None:intergenic |
| TAATTGCCTTACAGTGATCA+AGG | 0.481151 | 8.3:-27975124 | None:intergenic |
| GAAGGTAGCTATGAATGTCT+TGG | 0.483718 | 8.3:+27973784 | MS.gene89659:CDS |
| GAGTTTAAACTCTCAACCTC+CGG | 0.485410 | 8.3:+27974518 | MS.gene89659:CDS |
| CTCTTGTTCGTGATAATGAT+CGG | 0.486577 | 8.3:+27973920 | MS.gene89659:CDS |
| CTTTGGTGGTGTAAAACCCT+TGG | 0.489322 | 8.3:+27975151 | MS.gene89659:CDS |
| AAGGTGAAGGTAGTTATCAT+TGG | 0.490542 | 8.3:-27975105 | None:intergenic |
| ATCATAACCTCAACACTCTC+CGG | 0.491666 | 8.3:-27974060 | None:intergenic |
| AAGTTCAAGCTGTTGTAGCT+TGG | 0.491997 | 8.3:+27974136 | MS.gene89659:CDS |
| CATGTGGCTAGTATTCCAAA+TGG | 0.492146 | 8.3:+27974543 | MS.gene89659:CDS |
| CTAGCAAAAGCTGAGATTCT+GGG | 0.492983 | 8.3:+27975266 | MS.gene89659:CDS |
| TTTGCAGACTTATCACCTAA+AGG | 0.493122 | 8.3:-27974411 | None:intergenic |
| GTCGTAGCATAACTGAATCA+AGG | 0.494600 | 8.3:+27974733 | MS.gene89659:CDS |
| TGTGGGTCGTTCGTATAAAT+CGG | 0.497380 | 8.3:-27973569 | None:intergenic |
| ACCAAGGCTGAATATTGAAC+TGG | 0.499286 | 8.3:-27975200 | None:intergenic |
| GCCAGTTCAATATTCAGCCT+TGG | 0.499819 | 8.3:+27975199 | MS.gene89659:CDS |
| TATCATCGGAGACACCGAAC+AGG | 0.500516 | 8.3:+27973597 | MS.gene89659:CDS |
| TTCGTGATAATGATCGGAAT+GGG | 0.503368 | 8.3:+27973926 | MS.gene89659:CDS |
| TGAAAGAAGGTAAGAAAGAA+GGG | 0.510994 | 8.3:+27973995 | MS.gene89659:CDS |
| CTAGTATTCCAAATGGGAAT+GGG | 0.511642 | 8.3:+27974550 | MS.gene89659:CDS |
| GAGTTTGGCCAGGACATTCA+GGG | 0.511848 | 8.3:+27974983 | MS.gene89659:CDS |
| GCTAGTATTCCAAATGGGAA+TGG | 0.513562 | 8.3:+27974549 | MS.gene89659:CDS |
| GGGAAATTGATTATTGAAGA+GGG | 0.514529 | 8.3:+27973946 | MS.gene89659:CDS |
| AGGTTATTGGGAGTTTGGCC+AGG | 0.515595 | 8.3:+27974973 | MS.gene89659:CDS |
| AACAAGGATAATTGGTCCGT+TGG | 0.519943 | 8.3:+27975013 | MS.gene89659:CDS |
| TGGGAAATTGATTATTGAAG+AGG | 0.520796 | 8.3:+27973945 | MS.gene89659:CDS |
| TTATTGAAGAGGGTGGTGTT+GGG | 0.522924 | 8.3:+27973956 | MS.gene89659:CDS |
| AAGGCAATTATAAGCTTTGG+TGG | 0.523348 | 8.3:+27975137 | MS.gene89659:CDS |
| AGAATGCTGCAAAAGCAATT+GGG | 0.526059 | 8.3:+27974022 | MS.gene89659:CDS |
| CCTTCACCTTGATCACTGTA+AGG | 0.527091 | 8.3:+27975118 | MS.gene89659:CDS |
| CATGCTGTTGTGTTGGCTAG+TGG | 0.527156 | 8.3:+27974312 | MS.gene89659:CDS |
| GTTTCTGCTCCGGCTGAAGA+AGG | 0.528229 | 8.3:+27973766 | MS.gene89659:CDS |
| GGCATCTAAGCAACCTAACA+TGG | 0.529369 | 8.3:+27975301 | MS.gene89659:CDS |
| AATGGGAATGGGAATGGTAA+TGG | 0.530255 | 8.3:+27974567 | MS.gene89659:CDS |
| ACTTGGTCAGCTAGTTGGAT+CGG | 0.531313 | 8.3:-27973436 | None:intergenic |
| ATTATTGAAGAGGGTGGTGT+TGG | 0.531709 | 8.3:+27973955 | MS.gene89659:CDS |
| GAATTATACTTCACTTCTTG+AGG | 0.532839 | 8.3:-27974792 | None:intergenic |
| CTCCCAATAACCTTGATACA+AGG | 0.533183 | 8.3:-27974963 | None:intergenic |
| TCAACAACCGCTTTACAAGC+AGG | 0.535285 | 8.3:-27974894 | None:intergenic |
| AGAGGCTGAAGTATCAAAAG+AGG | 0.535965 | 8.3:+27975055 | MS.gene89659:CDS |
| CTCTCAACCTCCGGTTCATG+TGG | 0.536841 | 8.3:+27974527 | MS.gene89659:CDS |
| AGATCCTGAATTGAGAAGAT+CGG | 0.537419 | 8.3:+27974854 | MS.gene89659:CDS |
| GTTCGTGATAATGATCGGAA+TGG | 0.538777 | 8.3:+27973925 | MS.gene89659:CDS |
| TTTCATGTCAGCCTTACTCT+CGG | 0.543304 | 8.3:-27974658 | None:intergenic |
| TCATAGCTACCTTCTTCAGC+CGG | 0.546840 | 8.3:-27973775 | None:intergenic |
| GCTCTTAGGTATTTAGCTAA+GGG | 0.547848 | 8.3:+27974696 | MS.gene89659:CDS |
| GCAAGAATCCAAGAGTAGGC+TGG | 0.548621 | 8.3:+27975352 | MS.gene89659:CDS |
| CGACCCACACGTCGTATCAT+CGG | 0.549205 | 8.3:+27973583 | MS.gene89659:CDS |
| GTCCTTAAATGCAAAGTCAA+CGG | 0.550403 | 8.3:+27973643 | MS.gene89659:CDS |
| CTGGAATTAACATGAAGGGA+AGG | 0.550661 | 8.3:+27974622 | MS.gene89659:CDS |
| GGCTCATGATGAAGCTATTG+AGG | 0.550672 | 8.3:+27975322 | MS.gene89659:CDS |
| AATGGGAATGGTAATGGTAA+TGG | 0.555636 | 8.3:+27974573 | MS.gene89659:CDS |
| ATGTGGCTAGTATTCCAAAT+GGG | 0.556194 | 8.3:+27974544 | MS.gene89659:CDS |
| AATGGGAATGGGAATGGGAA+TGG | 0.559850 | 8.3:+27974561 | MS.gene89659:CDS |
| TCATCTTGAGAATTCAATTG+GGG | 0.560153 | 8.3:+27973723 | MS.gene89659:CDS |
| GATTCTGGGAGTTCTTGAAT+GGG | 0.561370 | 8.3:+27975280 | MS.gene89659:CDS |
| CATGAAGGGAAGGGAGCTTG+AGG | 0.567794 | 8.3:+27974632 | MS.gene89659:CDS |
| TGGAATTAACATGAAGGGAA+GGG | 0.568958 | 8.3:+27974623 | MS.gene89659:CDS |
| GTTGAGGTTATGATTCATGC+TGG | 0.574008 | 8.3:+27974069 | MS.gene89659:CDS |
| GGTAATGGTAACACGAAGCA+AGG | 0.575595 | 8.3:+27974588 | MS.gene89659:CDS |
| TCGTAGCATAACTGAATCAA+GGG | 0.578811 | 8.3:+27974734 | MS.gene89659:CDS |
| TCTTTCAAAAGTTTCAGCAA+AGG | 0.579129 | 8.3:-27973979 | None:intergenic |
| GGTTCATTTGAAGCAATTGG+TGG | 0.580378 | 8.3:-27973811 | None:intergenic |
| TATTCTGGAATTAACATGAA+GGG | 0.583104 | 8.3:+27974618 | MS.gene89659:CDS |
| TCGACTTCTTGATGAAAGAG+AGG | 0.587806 | 8.3:+27975037 | MS.gene89659:CDS |
| TAAATCGGAGCTTGATCTTG+CGG | 0.589182 | 8.3:-27973554 | None:intergenic |
| GTATTCTGGAATTAACATGA+AGG | 0.590360 | 8.3:+27974617 | MS.gene89659:CDS |
| ATGTTCCTGAACAGTTTCAA+AGG | 0.594223 | 8.3:-27974247 | None:intergenic |
| ATCCTCGTGAACCTCTAGAC+TGG | 0.598484 | 8.3:-27975382 | None:intergenic |
| GGTTCAGCTTGTGTATCTAG+GGG | 0.599727 | 8.3:+27975172 | MS.gene89659:CDS |
| CCTTACAGTGATCAAGGTGA+AGG | 0.602748 | 8.3:-27975118 | None:intergenic |
| CATTCAGGGCAACTGAAACA+AGG | 0.602936 | 8.3:+27974997 | MS.gene89659:CDS |
| CTGGAGCTTTACCAGTCTAG+AGG | 0.603436 | 8.3:+27975371 | MS.gene89659:CDS |
| GTCTCCGATGATACGACGTG+TGG | 0.607914 | 8.3:-27973587 | None:intergenic |
| GCTTCTTCGAGTTTCTGCTC+CGG | 0.616498 | 8.3:+27973756 | MS.gene89659:CDS |
| AAATCAGATGCATAAAGTTG+TGG | 0.616774 | 8.3:+27974431 | MS.gene89659:CDS |
| TCGTGATCCGGAGAGTGTTG+AGG | 0.617482 | 8.3:+27974053 | MS.gene89659:CDS |
| ACAAGCAACAAACCAATGAA+GGG | 0.626307 | 8.3:+27974487 | MS.gene89659:CDS |
| AAACACTCCTGCTTGTAAAG+CGG | 0.627963 | 8.3:+27974887 | MS.gene89659:CDS |
| TAGATACACAAGCTGAACCA+AGG | 0.635758 | 8.3:-27975168 | None:intergenic |
| TGTTGCAAGAATCCAAGAGT+AGG | 0.638612 | 8.3:+27975348 | MS.gene89659:CDS |
| TAAGGCTGACATGAAAGCAA+TGG | 0.638661 | 8.3:+27974665 | MS.gene89659:CDS |
| AAGGCTGAATATTGAACTGG+CGG | 0.644602 | 8.3:-27975197 | None:intergenic |
| AGATACACAAGCTGAACCAA+GGG | 0.658647 | 8.3:-27975167 | None:intergenic |
| TCATCAAGAAGTCGAACCAA+CGG | 0.665124 | 8.3:-27975029 | None:intergenic |
| TACCAGTCTAGAGGTTCACG+AGG | 0.671861 | 8.3:+27975380 | MS.gene89659:CDS |
| AAATTGATTATTGAAGAGGG+TGG | 0.676552 | 8.3:+27973949 | MS.gene89659:CDS |
| TCTCCGATGATACGACGTGT+GGG | 0.680678 | 8.3:-27973586 | None:intergenic |
| ATTGAAAGAGATTACTGCAG+TGG | 0.680776 | 8.3:+27974824 | MS.gene89659:CDS |
| AATATAGGATAGCAGAACCA+AGG | 0.686714 | 8.3:-27975216 | None:intergenic |
| ATACTAGCCACATGAACCGG+AGG | 0.714653 | 8.3:-27974534 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGCAATTGTTAGTAATA+AGG | + | chr8.3:27974275-27974294 | MS.gene89659:CDS | 20.0% |
| !!! | TTGCTATTTTACTTGAAAAA+GGG | + | chr8.3:27974769-27974788 | MS.gene89659:CDS | 20.0% |
| !!! | TTTGCTATTTTACTTGAAAA+AGG | + | chr8.3:27974768-27974787 | MS.gene89659:CDS | 20.0% |
| !! | AGATTGCGATTTTACATAAT+GGG | + | chr8.3:27973857-27973876 | MS.gene89659:CDS | 25.0% |
| !!! | TATTCTGGAATTAACATGAA+GGG | + | chr8.3:27974618-27974637 | MS.gene89659:CDS | 25.0% |
| AAATCAGATGCATAAAGTTG+TGG | + | chr8.3:27974431-27974450 | MS.gene89659:CDS | 30.0% | |
| AAATTGATTATTGAAGAGGG+TGG | + | chr8.3:27973949-27973968 | MS.gene89659:CDS | 30.0% | |
| AGTGAAGTATAATTCTGCTT+TGG | + | chr8.3:27974800-27974819 | MS.gene89659:CDS | 30.0% | |
| ATTCCTTGTATCAAGGTTAT+TGG | + | chr8.3:27974960-27974979 | MS.gene89659:CDS | 30.0% | |
| CTCATCTTGAGAATTCAATT+GGG | + | chr8.3:27973722-27973741 | MS.gene89659:CDS | 30.0% | |
| GAATTATACTTCACTTCTTG+AGG | - | chr8.3:27974795-27974814 | None:intergenic | 30.0% | |
| GCAAAAACATCTTGACATTT+AGG | - | chr8.3:27974189-27974208 | None:intergenic | 30.0% | |
| GGGAAATTGATTATTGAAGA+GGG | + | chr8.3:27973946-27973965 | MS.gene89659:CDS | 30.0% | |
| TCATCTTGAGAATTCAATTG+GGG | + | chr8.3:27973723-27973742 | MS.gene89659:CDS | 30.0% | |
| TCCCAAATTAAACCCAAAAT+CGG | - | chr8.3:27973835-27973854 | None:intergenic | 30.0% | |
| TCTCATCTTGAGAATTCAAT+TGG | + | chr8.3:27973721-27973740 | MS.gene89659:CDS | 30.0% | |
| TCTTTCAAAAGTTTCAGCAA+AGG | - | chr8.3:27973982-27974001 | None:intergenic | 30.0% | |
| TGAAAGAAGGTAAGAAAGAA+GGG | + | chr8.3:27973995-27974014 | MS.gene89659:CDS | 30.0% | |
| TGGGAAATTGATTATTGAAG+AGG | + | chr8.3:27973945-27973964 | MS.gene89659:CDS | 30.0% | |
| TGTAAGGCAATTATAAGCTT+TGG | + | chr8.3:27975134-27975153 | MS.gene89659:CDS | 30.0% | |
| TTCCTTGTATCAAGGTTATT+GGG | + | chr8.3:27974961-27974980 | MS.gene89659:CDS | 30.0% | |
| TTGAAAGAAGGTAAGAAAGA+AGG | + | chr8.3:27973994-27974013 | MS.gene89659:CDS | 30.0% | |
| TTGCTCAGCATAATATTGTT+AGG | + | chr8.3:27974205-27974224 | MS.gene89659:CDS | 30.0% | |
| ! | CAGATTGCGATTTTACATAA+TGG | + | chr8.3:27973856-27973875 | MS.gene89659:CDS | 30.0% |
| !! | ACTTTTGATTCCTTGTATCA+AGG | + | chr8.3:27974953-27974972 | MS.gene89659:CDS | 30.0% |
| !! | GTATTCTGGAATTAACATGA+AGG | + | chr8.3:27974617-27974636 | MS.gene89659:CDS | 30.0% |
| !! | TTGCTGAAACTTTTGAAAGA+AGG | + | chr8.3:27973982-27974001 | MS.gene89659:CDS | 30.0% |
| !!! | AACCGATTTTGGGTTTAATT+TGG | + | chr8.3:27973830-27973849 | MS.gene89659:CDS | 30.0% |
| !!! | ACCGATTTTGGGTTTAATTT+GGG | + | chr8.3:27973831-27973850 | MS.gene89659:CDS | 30.0% |
| AACAAGCAACAAACCAATGA+AGG | + | chr8.3:27974486-27974505 | MS.gene89659:CDS | 35.0% | |
| AAGGTAGCTATGAATGTCTT+GGG | + | chr8.3:27973785-27973804 | MS.gene89659:CDS | 35.0% | |
| AAGGTGAAGGTAGTTATCAT+TGG | - | chr8.3:27975108-27975127 | None:intergenic | 35.0% | |
| AATATAGGATAGCAGAACCA+AGG | - | chr8.3:27975219-27975238 | None:intergenic | 35.0% | |
| ACAACAGCTTGAACTTTCAT+AGG | - | chr8.3:27974132-27974151 | None:intergenic | 35.0% | |
| ACAAGCAACAAACCAATGAA+GGG | + | chr8.3:27974487-27974506 | MS.gene89659:CDS | 35.0% | |
| ACTCAATTTACTCCCTTCAT+TGG | - | chr8.3:27974502-27974521 | None:intergenic | 35.0% | |
| AGAATGCTGCAAAAGCAATT+GGG | + | chr8.3:27974022-27974041 | MS.gene89659:CDS | 35.0% | |
| AGATCCTGAATTGAGAAGAT+CGG | + | chr8.3:27974854-27974873 | MS.gene89659:CDS | 35.0% | |
| AGCTCTTAGGTATTTAGCTA+AGG | + | chr8.3:27974695-27974714 | MS.gene89659:CDS | 35.0% | |
| ATGTGGCTAGTATTCCAAAT+GGG | + | chr8.3:27974544-27974563 | MS.gene89659:CDS | 35.0% | |
| ATGTTCCTGAACAGTTTCAA+AGG | - | chr8.3:27974250-27974269 | None:intergenic | 35.0% | |
| ATTAAGATGCAGCATCCTTT+AGG | + | chr8.3:27974396-27974415 | MS.gene89659:CDS | 35.0% | |
| ATTCAATTGGGGATGTTTCA+TGG | + | chr8.3:27973734-27973753 | MS.gene89659:CDS | 35.0% | |
| ATTGAAAGAGATTACTGCAG+TGG | + | chr8.3:27974824-27974843 | MS.gene89659:CDS | 35.0% | |
| CTAGTATTCCAAATGGGAAT+GGG | + | chr8.3:27974550-27974569 | MS.gene89659:CDS | 35.0% | |
| GCAAAAGCAATTGGGTTATT+GGG | + | chr8.3:27974030-27974049 | MS.gene89659:CDS | 35.0% | |
| GCAACTGAAACAAGGATAAT+TGG | + | chr8.3:27975005-27975024 | MS.gene89659:CDS | 35.0% | |
| GCTCTTAGGTATTTAGCTAA+GGG | + | chr8.3:27974696-27974715 | MS.gene89659:CDS | 35.0% | |
| GTCCTTAAATGCAAAGTCAA+CGG | + | chr8.3:27973643-27973662 | MS.gene89659:CDS | 35.0% | |
| TAAAGTTGTGGCAAGTACTA+TGG | + | chr8.3:27974443-27974462 | MS.gene89659:CDS | 35.0% | |
| TAATTGCCTTACAGTGATCA+AGG | - | chr8.3:27975127-27975146 | None:intergenic | 35.0% | |
| TATCAAGGTTATTGGGAGTT+TGG | + | chr8.3:27974968-27974987 | MS.gene89659:CDS | 35.0% | |
| TCGTAGCATAACTGAATCAA+GGG | + | chr8.3:27974734-27974753 | MS.gene89659:CDS | 35.0% | |
| TGCAAAAGCAATTGGGTTAT+TGG | + | chr8.3:27974029-27974048 | MS.gene89659:CDS | 35.0% | |
| TGGAATTAACATGAAGGGAA+GGG | + | chr8.3:27974623-27974642 | MS.gene89659:CDS | 35.0% | |
| TTCGCGAAGATTCTTAAAGA+AGG | + | chr8.3:27974105-27974124 | MS.gene89659:CDS | 35.0% | |
| TTTGCAGACTTATCACCTAA+AGG | - | chr8.3:27974414-27974433 | None:intergenic | 35.0% | |
| ! | AAGAAGAGAAGCGAGTTTTT+CGG | - | chr8.3:27973527-27973546 | None:intergenic | 35.0% |
| ! | AAGGCAATTATAAGCTTTGG+TGG | + | chr8.3:27975137-27975156 | MS.gene89659:CDS | 35.0% |
| ! | ATCGGTTCATTTGAAGCAAT+TGG | - | chr8.3:27973817-27973836 | None:intergenic | 35.0% |
| ! | CTCTTGTTCGTGATAATGAT+CGG | + | chr8.3:27973920-27973939 | MS.gene89659:CDS | 35.0% |
| ! | TTCGTGATAATGATCGGAAT+GGG | + | chr8.3:27973926-27973945 | MS.gene89659:CDS | 35.0% |
| !! | AATGGGAATGGTAATGGTAA+TGG | + | chr8.3:27974573-27974592 | MS.gene89659:CDS | 35.0% |
| !! | GCTTCAAATGAACCGATTTT+GGG | + | chr8.3:27973820-27973839 | MS.gene89659:CDS | 35.0% |
| !! | TATTGCCTTTGAAACTGTTC+AGG | + | chr8.3:27974242-27974261 | MS.gene89659:CDS | 35.0% |
| !! | TGCTTCAAATGAACCGATTT+TGG | + | chr8.3:27973819-27973838 | MS.gene89659:CDS | 35.0% |
| !!! | GTTTTTCGGTTTTGGATTTG+AGG | - | chr8.3:27973513-27973532 | None:intergenic | 35.0% |
| !!! | TGCTTTTTCAAGAACCTGTT+CGG | - | chr8.3:27973614-27973633 | None:intergenic | 35.0% |
| AAACACTCCTGCTTGTAAAG+CGG | + | chr8.3:27974887-27974906 | MS.gene89659:CDS | 40.0% | |
| AACAAGGATAATTGGTCCGT+TGG | + | chr8.3:27975013-27975032 | MS.gene89659:CDS | 40.0% | |
| AAGCAAGGCTATTCGTATTC+TGG | + | chr8.3:27974603-27974622 | MS.gene89659:CDS | 40.0% | |
| AAGGCTGAATATTGAACTGG+CGG | - | chr8.3:27975200-27975219 | None:intergenic | 40.0% | |
| AAGTTCAAGCTGTTGTAGCT+TGG | + | chr8.3:27974136-27974155 | MS.gene89659:CDS | 40.0% | |
| AATGCCGATCTTCTCAATTC+AGG | - | chr8.3:27974861-27974880 | None:intergenic | 40.0% | |
| AATGGGAATGGGAATGGTAA+TGG | + | chr8.3:27974567-27974586 | MS.gene89659:CDS | 40.0% | |
| ACCAAGGCTGAATATTGAAC+TGG | - | chr8.3:27975203-27975222 | None:intergenic | 40.0% | |
| ACTAGCAAAAGCTGAGATTC+TGG | + | chr8.3:27975265-27975284 | MS.gene89659:CDS | 40.0% | |
| AGATACACAAGCTGAACCAA+GGG | - | chr8.3:27975170-27975189 | None:intergenic | 40.0% | |
| AGTTCAAGCTGTTGTAGCTT+GGG | + | chr8.3:27974137-27974156 | MS.gene89659:CDS | 40.0% | |
| ATCATAACCTCAACACTCTC+CGG | - | chr8.3:27974063-27974082 | None:intergenic | 40.0% | |
| ATTATTGAAGAGGGTGGTGT+TGG | + | chr8.3:27973955-27973974 | MS.gene89659:CDS | 40.0% | |
| ATTCCAAATGGGAATGGGAA+TGG | + | chr8.3:27974555-27974574 | MS.gene89659:CDS | 40.0% | |
| CATGTGGCTAGTATTCCAAA+TGG | + | chr8.3:27974543-27974562 | MS.gene89659:CDS | 40.0% | |
| CTAGCAAAAGCTGAGATTCT+GGG | + | chr8.3:27975266-27975285 | MS.gene89659:CDS | 40.0% | |
| CTCCCAATAACCTTGATACA+AGG | - | chr8.3:27974966-27974985 | None:intergenic | 40.0% | |
| CTGGAATTAACATGAAGGGA+AGG | + | chr8.3:27974622-27974641 | MS.gene89659:CDS | 40.0% | |
| GAAAAAAGAGAACGACGATG+AGG | + | chr8.3:27974368-27974387 | MS.gene89659:CDS | 40.0% | |
| GAAGGTAGCTATGAATGTCT+TGG | + | chr8.3:27973784-27973803 | MS.gene89659:CDS | 40.0% | |
| GAGAATGCTGCAAAAGCAAT+TGG | + | chr8.3:27974021-27974040 | MS.gene89659:CDS | 40.0% | |
| GAGTTTAAACTCTCAACCTC+CGG | + | chr8.3:27974518-27974537 | MS.gene89659:CDS | 40.0% | |
| GCTAGTATTCCAAATGGGAA+TGG | + | chr8.3:27974549-27974568 | MS.gene89659:CDS | 40.0% | |
| GTCGTAGCATAACTGAATCA+AGG | + | chr8.3:27974733-27974752 | MS.gene89659:CDS | 40.0% | |
| GTTGAGGTTATGATTCATGC+TGG | + | chr8.3:27974069-27974088 | MS.gene89659:CDS | 40.0% | |
| TAAATCGGAGCTTGATCTTG+CGG | - | chr8.3:27973557-27973576 | None:intergenic | 40.0% | |
| TAAGGCTGACATGAAAGCAA+TGG | + | chr8.3:27974665-27974684 | MS.gene89659:CDS | 40.0% | |
| TAGATACACAAGCTGAACCA+AGG | - | chr8.3:27975171-27975190 | None:intergenic | 40.0% | |
| TCATCAAGAAGTCGAACCAA+CGG | - | chr8.3:27975032-27975051 | None:intergenic | 40.0% | |
| TCGACTTCTTGATGAAAGAG+AGG | + | chr8.3:27975037-27975056 | MS.gene89659:CDS | 40.0% | |
| TGGTTCAGCTTGTGTATCTA+GGG | + | chr8.3:27975171-27975190 | MS.gene89659:CDS | 40.0% | |
| TGTGGGTCGTTCGTATAAAT+CGG | - | chr8.3:27973572-27973591 | None:intergenic | 40.0% | |
| TGTTGCAAGAATCCAAGAGT+AGG | + | chr8.3:27975348-27975367 | MS.gene89659:CDS | 40.0% | |
| TTATTGAAGAGGGTGGTGTT+GGG | + | chr8.3:27973956-27973975 | MS.gene89659:CDS | 40.0% | |
| TTCCAAATGGGAATGGGAAT+GGG | + | chr8.3:27974556-27974575 | MS.gene89659:CDS | 40.0% | |
| TTCGATTCATGCTGTTGTGT+TGG | + | chr8.3:27974305-27974324 | MS.gene89659:CDS | 40.0% | |
| TTGGTTCAGCTTGTGTATCT+AGG | + | chr8.3:27975170-27975189 | MS.gene89659:CDS | 40.0% | |
| TTTCATGTCAGCCTTACTCT+CGG | - | chr8.3:27974661-27974680 | None:intergenic | 40.0% | |
| ! | AGAGGCTGAAGTATCAAAAG+AGG | + | chr8.3:27975055-27975074 | MS.gene89659:CDS | 40.0% |
| ! | AGATTCTGGGAGTTCTTGAA+TGG | + | chr8.3:27975279-27975298 | MS.gene89659:CDS | 40.0% |
| ! | ATTTTACGAAAAGCTGCAGC+AGG | - | chr8.3:27973697-27973716 | None:intergenic | 40.0% |
| ! | GATTCTGGGAGTTCTTGAAT+GGG | + | chr8.3:27975280-27975299 | MS.gene89659:CDS | 40.0% |
| ! | GGTTCATTTGAAGCAATTGG+TGG | - | chr8.3:27973814-27973833 | None:intergenic | 40.0% |
| ! | GTTCGTGATAATGATCGGAA+TGG | + | chr8.3:27973925-27973944 | MS.gene89659:CDS | 40.0% |
| ! | TTTGCTAGTTCTTCACTGTC+TGG | - | chr8.3:27975254-27975273 | None:intergenic | 40.0% |
| !! | AGAAGCGAGTTTTTCGGTTT+TGG | - | chr8.3:27973521-27973540 | None:intergenic | 40.0% |
| !! | GACCGTTGACTTTGCATTTA+AGG | - | chr8.3:27973648-27973667 | None:intergenic | 40.0% |
| AATGGGAATGGGAATGGGAA+TGG | + | chr8.3:27974561-27974580 | MS.gene89659:CDS | 45.0% | |
| ACTTGGTCAGCTAGTTGGAT+CGG | - | chr8.3:27973439-27973458 | None:intergenic | 45.0% | |
| CATTCAGGGCAACTGAAACA+AGG | + | chr8.3:27974997-27975016 | MS.gene89659:CDS | 45.0% | |
| CCTTACAGTGATCAAGGTGA+AGG | - | chr8.3:27975121-27975140 | None:intergenic | 45.0% | |
| CCTTCACCTTGATCACTGTA+AGG | + | chr8.3:27975118-27975137 | MS.gene89659:CDS | 45.0% | |
| GCCAGTTCAATATTCAGCCT+TGG | + | chr8.3:27975199-27975218 | MS.gene89659:CDS | 45.0% | |
| GCTTCATCATGAGCCATGTT+AGG | - | chr8.3:27975317-27975336 | None:intergenic | 45.0% | |
| GGAATACTAGCCACATGAAC+CGG | - | chr8.3:27974540-27974559 | None:intergenic | 45.0% | |
| GGCATCTAAGCAACCTAACA+TGG | + | chr8.3:27975301-27975320 | MS.gene89659:CDS | 45.0% | |
| GGCTCATGATGAAGCTATTG+AGG | + | chr8.3:27975322-27975341 | MS.gene89659:CDS | 45.0% | |
| GGTTCAGCTTGTGTATCTAG+GGG | + | chr8.3:27975172-27975191 | MS.gene89659:CDS | 45.0% | |
| GTAAGCAAAGCAGCAGAAGA+AGG | + | chr8.3:27973457-27973476 | MS.gene89659:CDS | 45.0% | |
| TCAACAACCGCTTTACAAGC+AGG | - | chr8.3:27974897-27974916 | None:intergenic | 45.0% | |
| TCATAGCTACCTTCTTCAGC+CGG | - | chr8.3:27973778-27973797 | None:intergenic | 45.0% | |
| TGCTTACTTGGTCAGCTAGT+TGG | - | chr8.3:27973444-27973463 | None:intergenic | 45.0% | |
| TTCCCATTCCCATTCCCATT+TGG | - | chr8.3:27974561-27974580 | None:intergenic | 45.0% | |
| ! | ATCTGATGCTGCTGCTTCTT+TGG | + | chr8.3:27973894-27973913 | MS.gene89659:CDS | 45.0% |
| ! | GGTAATGGTAACACGAAGCA+AGG | + | chr8.3:27974588-27974607 | MS.gene89659:CDS | 45.0% |
| !! | CTTCTGCTGCTTTGCTTACT+TGG | - | chr8.3:27973456-27973475 | None:intergenic | 45.0% |
| !! | CTTTGGTGGTGTAAAACCCT+TGG | + | chr8.3:27975151-27975170 | MS.gene89659:CDS | 45.0% |
| !! | GCTTTACAAGCAGGAGTGTT+TGG | - | chr8.3:27974888-27974907 | None:intergenic | 45.0% |
| AGGTTATTGGGAGTTTGGCC+AGG | + | chr8.3:27974973-27974992 | MS.gene89659:CDS | 50.0% | |
| ATACTAGCCACATGAACCGG+AGG | - | chr8.3:27974537-27974556 | None:intergenic | 50.0% | |
| ATCCTCGTGAACCTCTAGAC+TGG | - | chr8.3:27975385-27975404 | None:intergenic | 50.0% | |
| CAATGGCTGCGAAAGCTCTT+AGG | + | chr8.3:27974682-27974701 | MS.gene89659:CDS | 50.0% | |
| CTGGAGCTTTACCAGTCTAG+AGG | + | chr8.3:27975371-27975390 | MS.gene89659:CDS | 50.0% | |
| GAGTTTGGCCAGGACATTCA+GGG | + | chr8.3:27974983-27975002 | MS.gene89659:CDS | 50.0% | |
| GCAAGAATCCAAGAGTAGGC+TGG | + | chr8.3:27975352-27975371 | MS.gene89659:CDS | 50.0% | |
| GTAAAGCTCCAGCCTACTCT+TGG | - | chr8.3:27975363-27975382 | None:intergenic | 50.0% | |
| TACCAGTCTAGAGGTTCACG+AGG | + | chr8.3:27975380-27975399 | MS.gene89659:CDS | 50.0% | |
| TATCATCGGAGACACCGAAC+AGG | + | chr8.3:27973597-27973616 | MS.gene89659:CDS | 50.0% | |
| TCTCCGATGATACGACGTGT+GGG | - | chr8.3:27973589-27973608 | None:intergenic | 50.0% | |
| TGGCACGTGCAACGCAATAT+AGG | - | chr8.3:27975234-27975253 | None:intergenic | 50.0% | |
| TGGGTTATTGGGTCGTGATC+CGG | + | chr8.3:27974041-27974060 | MS.gene89659:CDS | 50.0% | |
| TTCAGTTGCCCTGAATGTCC+TGG | - | chr8.3:27974994-27975013 | None:intergenic | 50.0% | |
| ! | GCTTCTTCGAGTTTCTGCTC+CGG | + | chr8.3:27973756-27973775 | MS.gene89659:CDS | 50.0% |
| !! | CATGCTGTTGTGTTGGCTAG+TGG | + | chr8.3:27974312-27974331 | MS.gene89659:CDS | 50.0% |
| CATGAAGGGAAGGGAGCTTG+AGG | + | chr8.3:27974632-27974651 | MS.gene89659:CDS | 55.0% | |
| CGACCCACACGTCGTATCAT+CGG | + | chr8.3:27973583-27973602 | MS.gene89659:CDS | 55.0% | |
| CTCTCAACCTCCGGTTCATG+TGG | + | chr8.3:27974527-27974546 | MS.gene89659:CDS | 55.0% | |
| GCTTGAGGATGCCGAGAGTA+AGG | + | chr8.3:27974647-27974666 | MS.gene89659:CDS | 55.0% | |
| GGAGTTTGGCCAGGACATTC+AGG | + | chr8.3:27974982-27975001 | MS.gene89659:CDS | 55.0% | |
| GTCTCCGATGATACGACGTG+TGG | - | chr8.3:27973590-27973609 | None:intergenic | 55.0% | |
| GTTTCTGCTCCGGCTGAAGA+AGG | + | chr8.3:27973766-27973785 | MS.gene89659:CDS | 55.0% | |
| !! | TCGTGATCCGGAGAGTGTTG+AGG | + | chr8.3:27974053-27974072 | MS.gene89659:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 27973403 | 27975424 | 27973403 | ID=MS.gene89659 |
| chr8.3 | mRNA | 27973403 | 27975424 | 27973403 | ID=MS.gene89659.t1;Parent=MS.gene89659 |
| chr8.3 | exon | 27973403 | 27975424 | 27973403 | ID=MS.gene89659.t1.exon1;Parent=MS.gene89659.t1 |
| chr8.3 | CDS | 27973403 | 27975424 | 27973403 | ID=cds.MS.gene89659.t1;Parent=MS.gene89659.t1 |
| Gene Sequence |
| Protein sequence |
