Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89736.t1 | XP_003606488.1 | 97.2 | 109 | 3 | 0 | 122 | 230 | 162 | 270 | 5.80E-57 | 231.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89736.t1 | P30707 | 98.0 | 99 | 2 | 0 | 7 | 105 | 67 | 165 | 1.0e-46 | 188.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89736.t1 | G7JRG3 | 97.2 | 109 | 3 | 0 | 122 | 230 | 162 | 270 | 4.2e-57 | 231.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060429 | MS.gene89736 | 0.818419 | 1.98E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89736.t1 | MTR_4g060900 | 97.248 | 109 | 3 | 0 | 122 | 230 | 162 | 270 | 1.76e-73 | 232 |
| MS.gene89736.t1 | MTR_3g093110 | 98.990 | 99 | 1 | 0 | 7 | 105 | 67 | 165 | 1.65e-63 | 197 |
| MS.gene89736.t1 | MTR_5g068780 | 87.879 | 99 | 12 | 0 | 7 | 105 | 67 | 165 | 1.18e-57 | 182 |
| MS.gene89736.t1 | MTR_7g100780 | 63.889 | 108 | 38 | 1 | 122 | 228 | 194 | 301 | 1.91e-44 | 157 |
| MS.gene89736.t1 | MTR_2g086300 | 44.860 | 107 | 54 | 2 | 128 | 229 | 92 | 198 | 6.99e-23 | 96.3 |
| MS.gene89736.t1 | MTR_3g104770 | 41.739 | 115 | 59 | 4 | 128 | 234 | 173 | 287 | 4.55e-22 | 94.7 |
| MS.gene89736.t1 | MTR_4g053620 | 51.220 | 82 | 39 | 1 | 130 | 210 | 92 | 173 | 1.28e-21 | 92.8 |
| MS.gene89736.t1 | MTR_1g060130 | 46.512 | 86 | 45 | 1 | 130 | 214 | 121 | 206 | 1.41e-20 | 90.1 |
| MS.gene89736.t1 | MTR_2g086290 | 42.000 | 100 | 57 | 1 | 126 | 224 | 82 | 181 | 9.73e-20 | 87.4 |
| MS.gene89736.t1 | MTR_1g060150 | 39.000 | 100 | 60 | 1 | 130 | 228 | 121 | 220 | 2.55e-18 | 83.6 |
| MS.gene89736.t1 | MTR_1g050458 | 43.373 | 83 | 46 | 1 | 129 | 210 | 88 | 170 | 4.25e-18 | 82.4 |
| MS.gene89736.t1 | MTR_1g050458 | 43.373 | 83 | 46 | 1 | 129 | 210 | 88 | 170 | 6.99e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89736.t1 | AT1G33140 | 88.889 | 99 | 11 | 0 | 7 | 105 | 68 | 166 | 9.59e-58 | 182 |
| MS.gene89736.t1 | AT1G33120 | 88.889 | 99 | 11 | 0 | 7 | 105 | 68 | 166 | 9.59e-58 | 182 |
| MS.gene89736.t1 | AT4G10450 | 79.630 | 108 | 22 | 0 | 7 | 114 | 68 | 175 | 2.39e-56 | 178 |
| MS.gene89736.t1 | AT4G10450 | 84.848 | 99 | 15 | 0 | 7 | 105 | 68 | 166 | 4.77e-55 | 176 |
| MS.gene89736.t1 | AT3G09690 | 66.364 | 110 | 36 | 1 | 122 | 230 | 203 | 312 | 8.71e-47 | 163 |
| MS.gene89736.t1 | AT3G09690 | 66.364 | 110 | 36 | 1 | 122 | 230 | 203 | 312 | 8.71e-47 | 163 |
| MS.gene89736.t1 | AT5G02970 | 59.259 | 108 | 43 | 1 | 122 | 228 | 200 | 307 | 2.86e-41 | 148 |
| MS.gene89736.t1 | AT3G44510 | 45.299 | 117 | 56 | 4 | 126 | 234 | 49 | 165 | 2.75e-24 | 97.8 |
| MS.gene89736.t1 | AT3G44510 | 45.299 | 117 | 56 | 4 | 126 | 234 | 49 | 165 | 3.82e-23 | 96.7 |
| MS.gene89736.t1 | AT3G54240 | 39.252 | 107 | 64 | 1 | 126 | 231 | 89 | 195 | 4.30e-21 | 91.3 |
| MS.gene89736.t1 | AT2G36290 | 37.226 | 137 | 63 | 4 | 75 | 210 | 58 | 172 | 1.85e-20 | 89.4 |
| MS.gene89736.t1 | AT2G36290 | 37.500 | 136 | 62 | 4 | 76 | 210 | 73 | 186 | 2.22e-20 | 89.4 |
| MS.gene89736.t1 | AT1G74280 | 47.619 | 84 | 43 | 1 | 130 | 212 | 109 | 192 | 4.11e-20 | 88.6 |
| MS.gene89736.t1 | AT5G22460 | 44.186 | 86 | 47 | 1 | 126 | 210 | 82 | 167 | 2.73e-19 | 86.3 |
| MS.gene89736.t1 | AT5G22460 | 44.186 | 86 | 47 | 1 | 126 | 210 | 82 | 167 | 2.73e-19 | 86.3 |
| MS.gene89736.t1 | AT5G22460 | 44.186 | 86 | 47 | 1 | 126 | 210 | 82 | 167 | 2.73e-19 | 86.3 |
| MS.gene89736.t1 | AT1G74300 | 46.429 | 84 | 44 | 1 | 130 | 212 | 92 | 175 | 1.97e-18 | 84.0 |
| MS.gene89736.t1 | AT1G08310 | 50.000 | 82 | 40 | 1 | 130 | 210 | 55 | 136 | 1.59e-17 | 79.7 |
| MS.gene89736.t1 | AT1G08310 | 50.000 | 82 | 40 | 1 | 130 | 210 | 55 | 136 | 1.86e-17 | 80.5 |
| MS.gene89736.t1 | AT1G08310 | 48.810 | 84 | 42 | 1 | 128 | 210 | 56 | 139 | 1.90e-17 | 80.9 |
| MS.gene89736.t1 | AT3G48410 | 45.783 | 83 | 44 | 1 | 129 | 210 | 119 | 201 | 5.79e-17 | 80.1 |
| MS.gene89736.t1 | AT3G48410 | 45.783 | 83 | 44 | 1 | 129 | 210 | 161 | 243 | 6.38e-17 | 80.1 |
| MS.gene89736.t1 | AT1G74290 | 45.349 | 86 | 44 | 2 | 130 | 212 | 109 | 194 | 1.19e-16 | 79.0 |
| MS.gene89736.t1 | AT3G03230 | 40.698 | 86 | 50 | 1 | 126 | 210 | 78 | 163 | 2.26e-16 | 77.8 |
| MS.gene89736.t1 | AT1G74300 | 47.368 | 76 | 39 | 1 | 138 | 212 | 1 | 76 | 4.50e-16 | 75.9 |
| MS.gene89736.t1 | AT3G03240 | 38.372 | 86 | 52 | 1 | 126 | 210 | 78 | 163 | 7.15e-16 | 76.3 |
Find 59 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATTTGTGTTTGAAATT+AGG | 0.133308 | 1.3:+34725236 | MS.gene89736:CDS |
| CTCTTGGTGTTGACAAGTTT+TGG | 0.207857 | 1.3:+34725402 | MS.gene89736:CDS |
| ATTGAGATCCGAAACTTTCT+TGG | 0.238218 | 1.3:+34724556 | MS.gene89736:CDS |
| ACTTATGATCTGTCTGGTTT+TGG | 0.260411 | 1.3:+34725311 | MS.gene89736:CDS |
| TCCTCATCCCAAACGAAATC+TGG | 0.315816 | 1.3:+34725343 | MS.gene89736:CDS |
| GGTGAAGGATGAGGTTGTTT+TGG | 0.319250 | 1.3:+34725010 | MS.gene89736:CDS |
| ATGACATTGAGCTTGTTTCT+AGG | 0.326351 | 1.3:+34725039 | MS.gene89736:CDS |
| TTAATACCTGCAAGTCTATC+AGG | 0.327430 | 1.3:-34725479 | None:intergenic |
| TATTGATGTTCTCTTGTTCA+TGG | 0.332907 | 1.3:+34726113 | MS.gene89736:CDS |
| TGTTCGCGTCCATTTGTTCC+AGG | 0.333418 | 1.3:-34726068 | None:intergenic |
| TGACGATTCCAGATTTCGTT+TGG | 0.334193 | 1.3:-34725351 | None:intergenic |
| TACATACCTGATAGACTTGC+AGG | 0.361619 | 1.3:+34725473 | MS.gene89736:CDS |
| TCTTCTCTCCAAGAAAGTTT+CGG | 0.365793 | 1.3:-34724564 | None:intergenic |
| TTTGTCATCAAAGGATCATA+TGG | 0.395653 | 1.3:-34726028 | None:intergenic |
| CTCAATCGACTTGTTGTCAT+TGG | 0.397158 | 1.3:-34724539 | None:intergenic |
| TGTTTGAAATTAGGAATTCC+TGG | 0.403021 | 1.3:+34725245 | MS.gene89736:CDS |
| TTGATTACTTATGATCTGTC+TGG | 0.408323 | 1.3:+34725305 | MS.gene89736:CDS |
| GACGATTCCAGATTTCGTTT+GGG | 0.408411 | 1.3:-34725350 | None:intergenic |
| CAAGTGGAAGCAAGCATGCT+TGG | 0.416127 | 1.3:+34725438 | MS.gene89736:CDS |
| GACGAAGAACCTGGAACAAA+TGG | 0.419319 | 1.3:+34726059 | MS.gene89736:CDS |
| GATTCACTGATGGAAGAGTT+TGG | 0.426210 | 1.3:+34725275 | MS.gene89736:CDS |
| CTCTCTTCGTTTGTCATCAA+AGG | 0.426304 | 1.3:-34726037 | None:intergenic |
| TGGGAAGACCCACTTGATAT+AGG | 0.432491 | 1.3:+34726133 | MS.gene89736:CDS |
| ATTGGTGATGCTAGCGTTGA+TGG | 0.438976 | 1.3:-34724521 | None:intergenic |
| AGGAAAGTAGATTTGCTTGA+TGG | 0.454716 | 1.3:+34724963 | MS.gene89736:CDS |
| ACGAAGAGAGACGAAGAACC+TGG | 0.455949 | 1.3:+34726050 | MS.gene89736:CDS |
| AGCAGTTCTGATGGCGGCGG+AGG | 0.457127 | 1.3:-34724419 | None:intergenic |
| TCCAGATTTCGTTTGGGATG+AGG | 0.462321 | 1.3:-34725344 | None:intergenic |
| AAGTGGAAGCAAGCATGCTT+GGG | 0.466214 | 1.3:+34725439 | MS.gene89736:CDS |
| ATCAATAATGTGTGACTCAA+AGG | 0.471308 | 1.3:-34726097 | None:intergenic |
| GGATCATATGGGTTCACCAT+GGG | 0.473212 | 1.3:-34726016 | None:intergenic |
| AAACTTTCTTGGAGAGAAGA+AGG | 0.493598 | 1.3:+34724567 | MS.gene89736:CDS |
| TTCAATTGTTCGATCTGAGA+AGG | 0.526562 | 1.3:+34724989 | MS.gene89736:CDS |
| TTGTCATCAAAGGATCATAT+GGG | 0.529008 | 1.3:-34726027 | None:intergenic |
| ATTGATGTTCTCTTGTTCAT+GGG | 0.529830 | 1.3:+34726114 | MS.gene89736:CDS |
| TTGGTGATGCTAGCGTTGAT+GGG | 0.543746 | 1.3:-34724520 | None:intergenic |
| CACGTTGAGAATCTCATCAC+TGG | 0.554104 | 1.3:+34724448 | MS.gene89736:CDS |
| CATCTTGTAGCGGAAACCCT+TGG | 0.558729 | 1.3:-34724476 | None:intergenic |
| AGGGTTTCCGCTACAAGATG+AGG | 0.564650 | 1.3:+34724479 | MS.gene89736:CDS |
| TGGATCATTGGTTACTCAAG+TGG | 0.565359 | 1.3:+34725422 | MS.gene89736:CDS |
| TGGTGTTAAAGATTCACTGA+TGG | 0.566190 | 1.3:+34725265 | MS.gene89736:CDS |
| ATCTGAGAAGGTGAAGGATG+AGG | 0.567425 | 1.3:+34725001 | MS.gene89736:CDS |
| TGTCTATTTCCTATATCAAG+TGG | 0.568760 | 1.3:-34726142 | None:intergenic |
| ATCAGTGAATCTTTAACACC+AGG | 0.570063 | 1.3:-34725263 | None:intergenic |
| CTCATCACTGGTGTTACCAA+GGG | 0.573994 | 1.3:+34724460 | MS.gene89736:CDS |
| GAGAGCAGTTCTGATGGCGG+CGG | 0.574544 | 1.3:-34724422 | None:intergenic |
| GTGGCTGAGAGCAGTTCTGA+TGG | 0.581831 | 1.3:-34724428 | None:intergenic |
| GTCTATTTCCTATATCAAGT+GGG | 0.590675 | 1.3:-34726141 | None:intergenic |
| TCTCATCACTGGTGTTACCA+AGG | 0.595050 | 1.3:+34724459 | MS.gene89736:CDS |
| GATCATATGGGTTCACCATG+GGG | 0.606822 | 1.3:-34726015 | None:intergenic |
| GTCATGTGCACTTATTAACC+AGG | 0.625933 | 1.3:+34725061 | MS.gene89736:CDS |
| TGTTCGATCTGAGAAGGTGA+AGG | 0.628133 | 1.3:+34724995 | MS.gene89736:CDS |
| AGGATCATATGGGTTCACCA+TGG | 0.635002 | 1.3:-34726017 | None:intergenic |
| ATCATATGGGTTCACCATGG+GGG | 0.655135 | 1.3:-34726014 | None:intergenic |
| TGGTGATGCTAGCGTTGATG+GGG | 0.676063 | 1.3:-34724519 | None:intergenic |
| GCTGAGAGCAGTTCTGATGG+CGG | 0.677632 | 1.3:-34724425 | None:intergenic |
| ACACAAACCTCATCTTGTAG+CGG | 0.691692 | 1.3:-34724486 | None:intergenic |
| TGATATAGGAAATAGACATG+TGG | 0.705651 | 1.3:+34726147 | MS.gene89736:CDS |
| CAGTGATGAGATTCTCAACG+TGG | 0.725921 | 1.3:-34724447 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATTAGATTAAAACTA+GGG | - | chr1.3:34724688-34724707 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | - | chr1.3:34724689-34724708 | None:intergenic | 10.0% |
| !!! | ATGAGTTAATTTTTTTATTT+TGG | + | chr1.3:34724831-34724850 | MS.gene89736:intron | 10.0% |
| !!! | ATTTTAATTTCTTCAATTTT+AGG | + | chr1.3:34724621-34724640 | MS.gene89736:intron | 10.0% |
| !!! | TAATAATTTTCGTATATTAC+AGG | + | chr1.3:34724729-34724748 | MS.gene89736:intron | 15.0% |
| !!! | TACTTCATTAAATTTAGTTT+AGG | + | chr1.3:34725645-34725664 | MS.gene89736:intron | 15.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | - | chr1.3:34724655-34724674 | None:intergenic | 20.0% |
| !!! | AAATGAGTTAATCTTTTATC+CGG | + | chr1.3:34724799-34724818 | MS.gene89736:intron | 20.0% |
| !!! | ACTTTTAACTTGACAAAATT+TGG | + | chr1.3:34725553-34725572 | MS.gene89736:intron | 20.0% |
| !!! | ATTAACTCATTTTTAATCAC+CGG | - | chr1.3:34724821-34724840 | None:intergenic | 20.0% |
| !!! | TCTATTTCTCAATTTATTAC+CGG | + | chr1.3:34725858-34725877 | MS.gene89736:intron | 20.0% |
| !!! | TTGAATTTGTGTTTGAAATT+AGG | + | chr1.3:34725236-34725255 | MS.gene89736:CDS | 20.0% |
| ! | ACAAAAATAAAGCATGTTCA+TGG | - | chr1.3:34725105-34725124 | None:intergenic | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | + | chr1.3:34724938-34724957 | MS.gene89736:intron | 25.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | + | chr1.3:34724865-34724884 | MS.gene89736:intron | 25.0% |
| !! | ACAAAATTTGGAACTTTCAT+AGG | + | chr1.3:34725565-34725584 | MS.gene89736:intron | 25.0% |
| !! | CATGATAGTTGTTATTCAAA+AGG | - | chr1.3:34725609-34725628 | None:intergenic | 25.0% |
| !!! | TGAGAAGAATAGAAGTTTTT+TGG | - | chr1.3:34724369-34724388 | None:intergenic | 25.0% |
| ATCAATAATGTGTGACTCAA+AGG | - | chr1.3:34726100-34726119 | None:intergenic | 30.0% | |
| ATTGATGTTCTCTTGTTCAT+GGG | + | chr1.3:34726114-34726133 | MS.gene89736:CDS | 30.0% | |
| GAATAATGTTGTATTAGGTG+AGG | + | chr1.3:34724943-34724962 | MS.gene89736:intron | 30.0% | |
| GATGTTGTGTATTAACTTTC+AGG | + | chr1.3:34725977-34725996 | MS.gene89736:intron | 30.0% | |
| GTCTATTTCCTATATCAAGT+GGG | - | chr1.3:34726144-34726163 | None:intergenic | 30.0% | |
| GTCTGATTTATTTGGTTATC+TGG | + | chr1.3:34724873-34724892 | MS.gene89736:intron | 30.0% | |
| TATTGATGTTCTCTTGTTCA+TGG | + | chr1.3:34726113-34726132 | MS.gene89736:CDS | 30.0% | |
| TCAAAAATGCCTCAAACTAA+GGG | - | chr1.3:34725205-34725224 | None:intergenic | 30.0% | |
| TGATATAGGAAATAGACATG+TGG | + | chr1.3:34726147-34726166 | MS.gene89736:CDS | 30.0% | |
| TGTCTATTTCCTATATCAAG+TGG | - | chr1.3:34726145-34726164 | None:intergenic | 30.0% | |
| TTCAAAAATGCCTCAAACTA+AGG | - | chr1.3:34725206-34725225 | None:intergenic | 30.0% | |
| TTGATTACTTATGATCTGTC+TGG | + | chr1.3:34725305-34725324 | MS.gene89736:CDS | 30.0% | |
| TTGTCATCAAAGGATCATAT+GGG | - | chr1.3:34726030-34726049 | None:intergenic | 30.0% | |
| TTTGTCATCAAAGGATCATA+TGG | - | chr1.3:34726031-34726050 | None:intergenic | 30.0% | |
| ! | ACTTGTTTAGAGTGAGTTAA+CGG | + | chr1.3:34725707-34725726 | MS.gene89736:intron | 30.0% |
| ! | TGTTTGAAATTAGGAATTCC+TGG | + | chr1.3:34725245-34725264 | MS.gene89736:CDS | 30.0% |
| ! | TTTACTAGTTTGAGAATCTG+TGG | + | chr1.3:34724911-34724930 | MS.gene89736:intron | 30.0% |
| !! | ATGAAGCACTGAAATATACA+CGG | - | chr1.3:34725918-34725937 | None:intergenic | 30.0% |
| !! | GAATGTTGTTGTTGTGTTTT+TGG | + | chr1.3:34725145-34725164 | MS.gene89736:intron | 30.0% |
| !!! | AGAAGTTTTTTGGAGTAGAA+GGG | - | chr1.3:34724359-34724378 | None:intergenic | 30.0% |
| !!! | TAGAAGTTTTTTGGAGTAGA+AGG | - | chr1.3:34724360-34724379 | None:intergenic | 30.0% |
| AAACTAAGGGAGAATTCTAG+AGG | - | chr1.3:34725192-34725211 | None:intergenic | 35.0% | |
| AAACTTTCTTGGAGAGAAGA+AGG | + | chr1.3:34724567-34724586 | MS.gene89736:CDS | 35.0% | |
| ATCAGTGAATCTTTAACACC+AGG | - | chr1.3:34725266-34725285 | None:intergenic | 35.0% | |
| ATGTTCATGGACCATGTTAA+GGG | - | chr1.3:34725092-34725111 | None:intergenic | 35.0% | |
| ATTGAGATCCGAAACTTTCT+TGG | + | chr1.3:34724556-34724575 | MS.gene89736:CDS | 35.0% | |
| TCTTCTCTCCAAGAAAGTTT+CGG | - | chr1.3:34724567-34724586 | None:intergenic | 35.0% | |
| TTAATACCTGCAAGTCTATC+AGG | - | chr1.3:34725482-34725501 | None:intergenic | 35.0% | |
| TTCAATTGTTCGATCTGAGA+AGG | + | chr1.3:34724989-34725008 | MS.gene89736:CDS | 35.0% | |
| TTGTGTCACATCAATAGAAC+AGG | + | chr1.3:34725761-34725780 | MS.gene89736:intron | 35.0% | |
| TTTCAGTGAGAATAAGTGTC+TGG | + | chr1.3:34725787-34725806 | MS.gene89736:intron | 35.0% | |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | + | chr1.3:34724963-34724982 | MS.gene89736:CDS | 35.0% |
| ! | ATGACATTGAGCTTGTTTCT+AGG | + | chr1.3:34725039-34725058 | MS.gene89736:CDS | 35.0% |
| ! | TAGAATTCTCCCTTAGTTTG+AGG | + | chr1.3:34725193-34725212 | MS.gene89736:intron | 35.0% |
| ! | TGGTGTTAAAGATTCACTGA+TGG | + | chr1.3:34725265-34725284 | MS.gene89736:CDS | 35.0% |
| !! | ACTTATGATCTGTCTGGTTT+TGG | + | chr1.3:34725311-34725330 | MS.gene89736:CDS | 35.0% |
| !!! | GAAGTTTTTTGGAGTAGAAG+GGG | - | chr1.3:34724358-34724377 | None:intergenic | 35.0% |
| !!! | GTTGACAAGTTTTGGATCAT+TGG | + | chr1.3:34725410-34725429 | MS.gene89736:CDS | 35.0% |
| AATCATTCCATTCGTAAGCG+AGG | + | chr1.3:34724326-34724345 | MS.gene89736:intron | 40.0% | |
| ACACAAACCTCATCTTGTAG+CGG | - | chr1.3:34724489-34724508 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | - | chr1.3:34725093-34725112 | None:intergenic | 40.0% | |
| CTCTCTTCGTTTGTCATCAA+AGG | - | chr1.3:34726040-34726059 | None:intergenic | 40.0% | |
| GACGATTCCAGATTTCGTTT+GGG | - | chr1.3:34725353-34725372 | None:intergenic | 40.0% | |
| GATTCACTGATGGAAGAGTT+TGG | + | chr1.3:34725275-34725294 | MS.gene89736:CDS | 40.0% | |
| GGAACAGAAATGCCAAGTTA+AGG | + | chr1.3:34725166-34725185 | MS.gene89736:intron | 40.0% | |
| GTCATGTGCACTTATTAACC+AGG | + | chr1.3:34725061-34725080 | MS.gene89736:CDS | 40.0% | |
| TACATACCTGATAGACTTGC+AGG | + | chr1.3:34725473-34725492 | MS.gene89736:CDS | 40.0% | |
| TGACGATTCCAGATTTCGTT+TGG | - | chr1.3:34725354-34725373 | None:intergenic | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | - | chr1.3:34725091-34725110 | None:intergenic | 40.0% | |
| TTCTTCTCAAGATCGATGCT+TGG | + | chr1.3:34724380-34724399 | MS.gene89736:intron | 40.0% | |
| ! | GAATTCTAGAGGCCTTAACT+TGG | - | chr1.3:34725181-34725200 | None:intergenic | 40.0% |
| ! | TGGATCATTGGTTACTCAAG+TGG | + | chr1.3:34725422-34725441 | MS.gene89736:CDS | 40.0% |
| !! | CTCAATCGACTTGTTGTCAT+TGG | - | chr1.3:34724542-34724561 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | + | chr1.3:34725014-34725033 | MS.gene89736:CDS | 40.0% |
| !!! | CTCTTGGTGTTGACAAGTTT+TGG | + | chr1.3:34725402-34725421 | MS.gene89736:CDS | 40.0% |
| !!! | TCGTTTTTAGCTGATGCTCT+TGG | + | chr1.3:34725386-34725405 | MS.gene89736:CDS | 40.0% |
| AAGTGGAAGCAAGCATGCTT+GGG | + | chr1.3:34725439-34725458 | MS.gene89736:CDS | 45.0% | |
| AGGATCATATGGGTTCACCA+TGG | - | chr1.3:34726020-34726039 | None:intergenic | 45.0% | |
| ATCATATGGGTTCACCATGG+GGG | - | chr1.3:34726017-34726036 | None:intergenic | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | + | chr1.3:34725001-34725020 | MS.gene89736:CDS | 45.0% | |
| CACGTTGAGAATCTCATCAC+TGG | + | chr1.3:34724448-34724467 | MS.gene89736:CDS | 45.0% | |
| CAGTGATGAGATTCTCAACG+TGG | - | chr1.3:34724450-34724469 | None:intergenic | 45.0% | |
| CTCAAGATCGATGCTTGGTT+TGG | + | chr1.3:34724385-34724404 | MS.gene89736:intron | 45.0% | |
| GACGAAGAACCTGGAACAAA+TGG | + | chr1.3:34726059-34726078 | MS.gene89736:CDS | 45.0% | |
| GATCATATGGGTTCACCATG+GGG | - | chr1.3:34726018-34726037 | None:intergenic | 45.0% | |
| GGATCATATGGGTTCACCAT+GGG | - | chr1.3:34726019-34726038 | None:intergenic | 45.0% | |
| TCCTCATCCCAAACGAAATC+TGG | + | chr1.3:34725343-34725362 | MS.gene89736:CDS | 45.0% | |
| TGGGAAGACCCACTTGATAT+AGG | + | chr1.3:34726133-34726152 | MS.gene89736:CDS | 45.0% | |
| TGTCAGTGTCATGTCGTGTT+TGG | + | chr1.3:34725889-34725908 | MS.gene89736:intron | 45.0% | |
| TGTTCGATCTGAGAAGGTGA+AGG | + | chr1.3:34724995-34725014 | MS.gene89736:CDS | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | + | chr1.3:34725010-34725029 | MS.gene89736:CDS | 45.0% |
| ! | TCCAGATTTCGTTTGGGATG+AGG | - | chr1.3:34725347-34725366 | None:intergenic | 45.0% |
| !! | ATTGGTGATGCTAGCGTTGA+TGG | - | chr1.3:34724524-34724543 | None:intergenic | 45.0% |
| !! | CTCATCACTGGTGTTACCAA+GGG | + | chr1.3:34724460-34724479 | MS.gene89736:CDS | 45.0% |
| !! | TCTCATCACTGGTGTTACCA+AGG | + | chr1.3:34724459-34724478 | MS.gene89736:CDS | 45.0% |
| !! | TTGGTGATGCTAGCGTTGAT+GGG | - | chr1.3:34724523-34724542 | None:intergenic | 45.0% |
| ACCAGGTACACCCCTTAACA+TGG | + | chr1.3:34725078-34725097 | MS.gene89736:intron | 50.0% | |
| ACGAAGAGAGACGAAGAACC+TGG | + | chr1.3:34726050-34726069 | MS.gene89736:CDS | 50.0% | |
| AGGGTTTCCGCTACAAGATG+AGG | + | chr1.3:34724479-34724498 | MS.gene89736:CDS | 50.0% | |
| CAAGTGGAAGCAAGCATGCT+TGG | + | chr1.3:34725438-34725457 | MS.gene89736:CDS | 50.0% | |
| TGACACTGACACGTAGAGAC+CGG | - | chr1.3:34725880-34725899 | None:intergenic | 50.0% | |
| TGTTCGCGTCCATTTGTTCC+AGG | - | chr1.3:34726071-34726090 | None:intergenic | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | - | chr1.3:34725082-34725101 | None:intergenic | 50.0% |
| ! | CATCTTGTAGCGGAAACCCT+TGG | - | chr1.3:34724479-34724498 | None:intergenic | 50.0% |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | + | chr1.3:34724392-34724411 | MS.gene89736:intron | 50.0% |
| !! | TGGTGATGCTAGCGTTGATG+GGG | - | chr1.3:34724522-34724541 | None:intergenic | 50.0% |
| GCTTCGACCTCGCTTACGAA+TGG | - | chr1.3:34724336-34724355 | None:intergenic | 55.0% | |
| GTTCACCATGGGGGCAAACA+TGG | - | chr1.3:34726008-34726027 | None:intergenic | 55.0% | |
| TACTGCCATGTTTGCCCCCA+TGG | + | chr1.3:34726000-34726019 | MS.gene89736:CDS | 55.0% | |
| ! | GCTGAGAGCAGTTCTGATGG+CGG | - | chr1.3:34724428-34724447 | None:intergenic | 55.0% |
| ! | GTGGCTGAGAGCAGTTCTGA+TGG | - | chr1.3:34724431-34724450 | None:intergenic | 55.0% |
| !! | GAGAGCAGTTCTGATGGCGG+CGG | - | chr1.3:34724425-34724444 | None:intergenic | 60.0% |
| !! | AGCAGTTCTGATGGCGGCGG+AGG | - | chr1.3:34724422-34724441 | None:intergenic | 65.0% |
| !! | GATGGCGGCGGAGGTTTTCC+TGG | - | chr1.3:34724413-34724432 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 34724322 | 34726177 | 34724322 | ID=MS.gene89736 |
| chr1.3 | mRNA | 34724322 | 34726177 | 34724322 | ID=MS.gene89736.t1;Parent=MS.gene89736 |
| chr1.3 | exon | 34724322 | 34724338 | 34724322 | ID=MS.gene89736.t1.exon1;Parent=MS.gene89736.t1 |
| chr1.3 | CDS | 34724322 | 34724338 | 34724322 | ID=cds.MS.gene89736.t1;Parent=MS.gene89736.t1 |
| chr1.3 | exon | 34724414 | 34724588 | 34724414 | ID=MS.gene89736.t1.exon2;Parent=MS.gene89736.t1 |
| chr1.3 | CDS | 34724414 | 34724588 | 34724414 | ID=cds.MS.gene89736.t1;Parent=MS.gene89736.t1 |
| chr1.3 | exon | 34724960 | 34725082 | 34724960 | ID=MS.gene89736.t1.exon3;Parent=MS.gene89736.t1 |
| chr1.3 | CDS | 34724960 | 34725082 | 34724960 | ID=cds.MS.gene89736.t1;Parent=MS.gene89736.t1 |
| chr1.3 | exon | 34725209 | 34725494 | 34725209 | ID=MS.gene89736.t1.exon4;Parent=MS.gene89736.t1 |
| chr1.3 | CDS | 34725209 | 34725494 | 34725209 | ID=cds.MS.gene89736.t1;Parent=MS.gene89736.t1 |
| chr1.3 | exon | 34725999 | 34726177 | 34725999 | ID=MS.gene89736.t1.exon5;Parent=MS.gene89736.t1 |
| chr1.3 | CDS | 34725999 | 34726177 | 34725999 | ID=cds.MS.gene89736.t1;Parent=MS.gene89736.t1 |
| Gene Sequence |
| Protein sequence |
