Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89947.t1 | RHN66685.1 | 92.7 | 248 | 18 | 0 | 1 | 248 | 41 | 288 | 3.00E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89947.t1 | Q6NLB1 | 57.8 | 230 | 91 | 4 | 21 | 248 | 59 | 284 | 2.0e-74 | 280.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89947.t1 | A0A072UVH6 | 92.7 | 248 | 18 | 0 | 1 | 248 | 1 | 248 | 2.1e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06121 | MS.gene89947 | 0.801469 | 8.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89947.t1 | MTR_3g436860 | 92.742 | 248 | 18 | 0 | 1 | 248 | 1 | 248 | 4.35e-174 | 483 |
| MS.gene89947.t1 | MTR_3g436860 | 92.742 | 248 | 18 | 0 | 1 | 248 | 66 | 313 | 4.60e-174 | 484 |
| MS.gene89947.t1 | MTR_5g089110 | 69.412 | 255 | 70 | 5 | 1 | 248 | 59 | 312 | 1.59e-124 | 358 |
| MS.gene89947.t1 | MTR_5g089110 | 69.412 | 255 | 70 | 5 | 1 | 248 | 59 | 312 | 4.12e-124 | 358 |
| MS.gene89947.t1 | MTR_7g089640 | 56.627 | 249 | 100 | 3 | 1 | 248 | 66 | 307 | 1.21e-80 | 248 |
| MS.gene89947.t1 | MTR_7g089670 | 39.827 | 231 | 127 | 3 | 19 | 249 | 11 | 229 | 1.79e-51 | 170 |
| MS.gene89947.t1 | MTR_7g089730 | 40.586 | 239 | 113 | 6 | 22 | 249 | 10 | 230 | 4.09e-49 | 164 |
| MS.gene89947.t1 | MTR_7g089720 | 38.976 | 254 | 124 | 7 | 15 | 255 | 12 | 247 | 3.33e-47 | 159 |
| MS.gene89947.t1 | MTR_7g089700 | 38.710 | 248 | 121 | 7 | 21 | 255 | 19 | 248 | 1.45e-44 | 152 |
| MS.gene89947.t1 | MTR_6g039460 | 37.607 | 234 | 121 | 6 | 21 | 247 | 18 | 233 | 1.86e-39 | 139 |
| MS.gene89947.t1 | MTR_6g039470 | 43.243 | 74 | 42 | 0 | 21 | 94 | 90 | 163 | 3.91e-16 | 75.9 |
| MS.gene89947.t1 | MTR_1030s0010 | 33.582 | 134 | 69 | 4 | 35 | 161 | 2 | 122 | 3.45e-14 | 67.8 |
| MS.gene89947.t1 | MTR_7g089560 | 58.462 | 65 | 27 | 0 | 5 | 69 | 59 | 123 | 4.34e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89947.t1 | AT2G26850 | 55.274 | 237 | 102 | 2 | 13 | 248 | 51 | 284 | 5.41e-92 | 273 |
| MS.gene89947.t1 | AT2G26850 | 56.769 | 229 | 95 | 2 | 21 | 248 | 59 | 284 | 7.07e-90 | 270 |
| MS.gene89947.t1 | AT2G32560 | 53.942 | 241 | 106 | 3 | 10 | 248 | 48 | 285 | 1.13e-88 | 266 |
| MS.gene89947.t1 | AT2G32560 | 53.942 | 241 | 106 | 3 | 10 | 248 | 48 | 285 | 3.77e-88 | 266 |
| MS.gene89947.t1 | AT2G41170 | 50.806 | 248 | 108 | 5 | 9 | 248 | 44 | 285 | 2.58e-73 | 226 |
| MS.gene89947.t1 | AT2G41170 | 50.806 | 248 | 108 | 5 | 9 | 248 | 44 | 285 | 5.44e-72 | 225 |
| MS.gene89947.t1 | AT2G41170 | 50.806 | 248 | 108 | 5 | 9 | 248 | 44 | 285 | 8.57e-72 | 225 |
Find 56 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGGTCAAGCTGCTTAT+AGG | 0.268138 | 3.4:-36167860 | MS.gene89947:CDS |
| CTATTGAAACTGGCAGCTTC+TGG | 0.273408 | 3.4:-36167644 | MS.gene89947:CDS |
| AAGAAATGGGGTGGAGTTAT+TGG | 0.308285 | 3.4:-36167876 | MS.gene89947:CDS |
| TATTGGTCAAGCTGCTTATA+GGG | 0.310671 | 3.4:-36167859 | MS.gene89947:CDS |
| AGAAAATTTACCTTGCTAGA+AGG | 0.316417 | 3.4:+36167144 | None:intergenic |
| TGGTATCTTGCTATTGAAAC+TGG | 0.365562 | 3.4:-36167654 | MS.gene89947:CDS |
| TTACCTTGCTAGAAGGGTAT+TGG | 0.378676 | 3.4:+36167151 | None:intergenic |
| AGAGACACATGAAGAAGAAA+TGG | 0.390116 | 3.4:-36167890 | MS.gene89947:CDS |
| ATGGCAAACAAAGTGGGTTA+TGG | 0.390808 | 3.4:-36167788 | MS.gene89947:CDS |
| TGAGGAGAAGTTATCATTGT+TGG | 0.399408 | 3.4:-36168030 | MS.gene89947:CDS |
| ATTAATTTCATCCCTTGAAA+AGG | 0.407791 | 3.4:+36167741 | None:intergenic |
| GGTGTGTGAGTGATTACTTT+TGG | 0.408241 | 3.4:-36167914 | MS.gene89947:CDS |
| CAGCATCATAGCAAGATAAC+AGG | 0.411746 | 3.4:+36167195 | None:intergenic |
| CTTAAATATGGCAAACAAAG+TGG | 0.431167 | 3.4:-36167795 | MS.gene89947:CDS |
| TGTTTAAATGATTTGCATCC+TGG | 0.435950 | 3.4:-36166689 | MS.gene89947:CDS |
| AATTCACACAAGGATGTCTA+TGG | 0.439355 | 3.4:-36168096 | None:intergenic |
| TGATCATGTTGAAGAGATTG+AGG | 0.446335 | 3.4:-36168048 | MS.gene89947:CDS |
| CTGTTGATTCTGTTATGAAT+TGG | 0.447633 | 3.4:-36167674 | MS.gene89947:CDS |
| GAAAATTTACCTTGCTAGAA+GGG | 0.455807 | 3.4:+36167145 | None:intergenic |
| TTTGCCATTCATTGAGGGAG+AGG | 0.463802 | 3.4:-36167935 | MS.gene89947:CDS |
| GAGACACATGAAGAAGAAAT+GGG | 0.464075 | 3.4:-36167889 | MS.gene89947:CDS |
| GAAATGATAGCTGCAATCAT+AGG | 0.468430 | 3.4:-36167707 | MS.gene89947:CDS |
| TCATGTGGAGAGATATCAAC+AGG | 0.476304 | 3.4:+36166728 | None:intergenic |
| GTGTTGTAGAATGGTCATCT+TGG | 0.481169 | 3.4:-36167221 | MS.gene89947:intron |
| GTCAAGCTGCTTATAGGGAA+TGG | 0.482088 | 3.4:-36167854 | MS.gene89947:CDS |
| CACACCTCTCCCTCAATGAA+TGG | 0.486048 | 3.4:+36167931 | None:intergenic |
| GGACTTGCCAGAGCTAACTT+TGG | 0.486829 | 3.4:-36168009 | MS.gene89947:CDS |
| CTGCTTATAGGGAATGGAAA+TGG | 0.494975 | 3.4:-36167848 | MS.gene89947:CDS |
| GGTGTTGGGAGTCTTAAATA+TGG | 0.497305 | 3.4:-36167807 | MS.gene89947:CDS |
| TGGTGTTTGCCATTCATTGA+GGG | 0.502353 | 3.4:-36167940 | MS.gene89947:CDS |
| CAAGGGATGAAATTAATGGT+TGG | 0.513850 | 3.4:-36167735 | MS.gene89947:CDS |
| CAATTCATAACAGAATCAAC+AGG | 0.536613 | 3.4:+36167675 | None:intergenic |
| TGAATCTCTATGTGATTGCC+AGG | 0.537023 | 3.4:+36166671 | None:intergenic |
| ATGCATTCCAAAGTTAGCTC+TGG | 0.537840 | 3.4:+36168002 | None:intergenic |
| TTCCCCAGATCCGTGTAACA+TGG | 0.551967 | 3.4:-36166485 | MS.gene89947:intron |
| GCTTCTCTTCTTCCATGTGA+AGG | 0.553293 | 3.4:+36166791 | None:intergenic |
| TCACGGTTATAGACTTGAGC+AGG | 0.560717 | 3.4:+36167618 | None:intergenic |
| CTACAGAGTGTGGAATTCCA+TGG | 0.563301 | 3.4:-36166769 | MS.gene89947:CDS |
| AGAAGAGAAGCTACAGAGTG+TGG | 0.568736 | 3.4:-36166779 | MS.gene89947:CDS |
| CTGGTGTTTGCCATTCATTG+AGG | 0.574818 | 3.4:-36167941 | MS.gene89947:CDS |
| TTAAATATGGCAAACAAAGT+GGG | 0.582651 | 3.4:-36167794 | MS.gene89947:CDS |
| TGTTATAGGTATCCTTCACA+TGG | 0.589247 | 3.4:-36166803 | MS.gene89947:intron |
| ATGAAATTAATGGTTGGTGA+TGG | 0.589442 | 3.4:-36167729 | MS.gene89947:CDS |
| AGTGTGGAATTCCATGGGAA+AGG | 0.593828 | 3.4:-36166763 | MS.gene89947:CDS |
| TACAGAGTGTGGAATTCCAT+GGG | 0.597153 | 3.4:-36166768 | MS.gene89947:CDS |
| GCAATCACATAGAGATTCAG+TGG | 0.599756 | 3.4:-36166667 | MS.gene89947:CDS |
| CACATGAAGAAGAAATGGGG+TGG | 0.618879 | 3.4:-36167885 | MS.gene89947:CDS |
| TCAGAGATATGAAGATCATG+TGG | 0.622183 | 3.4:+36166713 | None:intergenic |
| GGTGCTCTTAGCCTTTCCCA+TGG | 0.627050 | 3.4:+36166752 | None:intergenic |
| GAACCAATACCCTTCTAGCA+AGG | 0.643683 | 3.4:-36167154 | MS.gene89947:intron |
| ACACAAGGATGTCTATGGTG+AGG | 0.658567 | 3.4:-36168091 | None:intergenic |
| AGTCAAGATTCCATGTTACA+CGG | 0.684199 | 3.4:+36166475 | None:intergenic |
| AGACACATGAAGAAGAAATG+GGG | 0.695841 | 3.4:-36167888 | MS.gene89947:CDS |
| TGCTCAAGTCTATAACCGTG+AGG | 0.705835 | 3.4:-36167616 | MS.gene89947:intron |
| ATCACATAGAGATTCAGTGG+AGG | 0.714698 | 3.4:-36166664 | MS.gene89947:CDS |
| TGTGGAGAGATATCAACAGG+AGG | 0.726181 | 3.4:+36166731 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATCTATTATGTATTAAAT+TGG | - | chr3.4:36167480-36167499 | MS.gene89947:intron | 15.0% |
| !! | TAAACAACTTAAACTTAAAA+TGG | + | chr3.4:36167667-36167686 | None:intergenic | 15.0% |
| !! | TAGTTAATAGAATTAATACA+TGG | + | chr3.4:36167977-36167996 | None:intergenic | 15.0% |
| !!! | AATTTTCATAACAAATTAGA+TGG | + | chr3.4:36167162-36167181 | None:intergenic | 15.0% |
| !!! | TTATTTTCAATGGAATTTAA+TGG | - | chr3.4:36167276-36167295 | MS.gene89947:intron | 15.0% |
| !! | AGAAAAAAAGAATTTCCTTA+TGG | - | chr3.4:36167919-36167938 | MS.gene89947:CDS | 20.0% |
| !! | ATTAATGTAGTTCAAATAAG+TGG | - | chr3.4:36167043-36167062 | MS.gene89947:intron | 20.0% |
| !! | CAAGACAAAATTTCTATTTA+TGG | + | chr3.4:36167585-36167604 | None:intergenic | 20.0% |
| !! | TACATGGAATTAAAAAATGA+TGG | + | chr3.4:36167961-36167980 | None:intergenic | 20.0% |
| !!! | ATCAATTGCTTTATTTTCAA+TGG | - | chr3.4:36167266-36167285 | MS.gene89947:intron | 20.0% |
| !!! | ATTAAATGATTGCTTGTTAT+AGG | - | chr3.4:36167743-36167762 | MS.gene89947:CDS | 20.0% |
| !!! | TGGTAAGATTTTATCAAAAA+TGG | + | chr3.4:36167647-36167666 | None:intergenic | 20.0% |
| ! | ATGGAATTAAAAAATGATGG+TGG | + | chr3.4:36167958-36167977 | None:intergenic | 25.0% |
| ! | ATTAATTTCATCCCTTGAAA+AGG | + | chr3.4:36166822-36166841 | None:intergenic | 25.0% |
| ! | CCTAAAAAAAAATGACCAAA+GGG | + | chr3.4:36166982-36167001 | None:intergenic | 25.0% |
| ! | GTTAATACAGTTCAAATATG+TGG | + | chr3.4:36167140-36167159 | None:intergenic | 25.0% |
| ! | TTAAATATGGCAAACAAAGT+GGG | - | chr3.4:36166766-36166785 | MS.gene89947:CDS | 25.0% |
| !! | CTTTTCTTTTCTTAAGATAG+AGG | + | chr3.4:36168002-36168021 | None:intergenic | 25.0% |
| !! | TGAAAATTTTCTCTCTTCTT+TGG | - | chr3.4:36166796-36166815 | MS.gene89947:CDS | 25.0% |
| !! | TTTCTCACATGTTACAATTT+TGG | - | chr3.4:36167305-36167324 | MS.gene89947:intron | 25.0% |
| !!! | AAAGAATGTTCTAAGAACAT+TGG | + | chr3.4:36167691-36167710 | None:intergenic | 25.0% |
| !!! | CCTTTGGTCATTTTTTTTTA+GGG | - | chr3.4:36166980-36166999 | MS.gene89947:intron | 25.0% |
| !!! | GTCATTTTTTTTTAGGGAAA+TGG | - | chr3.4:36166986-36167005 | MS.gene89947:intron | 25.0% |
| !!! | TTTTCAAGGGATGAAATTAA+TGG | - | chr3.4:36166821-36166840 | MS.gene89947:intron | 25.0% |
| AGAAAATTTACCTTGCTAGA+AGG | + | chr3.4:36167419-36167438 | None:intergenic | 30.0% | |
| ATTTGAAAAAGTGAAGAAGG+AGG | + | chr3.4:36166597-36166616 | None:intergenic | 30.0% | |
| ATTTGAGTATCAACCAGATA+AGG | - | chr3.4:36167519-36167538 | MS.gene89947:intron | 30.0% | |
| CAATTCATAACAGAATCAAC+AGG | + | chr3.4:36166888-36166907 | None:intergenic | 30.0% | |
| CCCTAAAAAAAAATGACCAA+AGG | + | chr3.4:36166983-36167002 | None:intergenic | 30.0% | |
| CTTAAATATGGCAAACAAAG+TGG | - | chr3.4:36166765-36166784 | MS.gene89947:CDS | 30.0% | |
| GAAAATTTACCTTGCTAGAA+GGG | + | chr3.4:36167418-36167437 | None:intergenic | 30.0% | |
| GATGGCTAATGAATATAACA+AGG | - | chr3.4:36167082-36167101 | MS.gene89947:intron | 30.0% | |
| ! | AATTTTTGCAGCTAACAGTA+TGG | + | chr3.4:36167244-36167263 | None:intergenic | 30.0% |
| ! | TCTGACATTTGTGTTATTAG+AGG | + | chr3.4:36168029-36168048 | None:intergenic | 30.0% |
| ! | TGTTTAAATGATTTGCATCC+TGG | - | chr3.4:36167871-36167890 | MS.gene89947:CDS | 30.0% |
| !! | ACATGTTACAATTTTGGTGT+TGG | - | chr3.4:36167311-36167330 | MS.gene89947:intron | 30.0% |
| !! | ATGAAATTAATGGTTGGTGA+TGG | - | chr3.4:36166831-36166850 | MS.gene89947:intron | 30.0% |
| !! | CTGTTGATTCTGTTATGAAT+TGG | - | chr3.4:36166886-36166905 | MS.gene89947:intron | 30.0% |
| !! | TAAAAAATGATGGTGGAGAA+AGG | + | chr3.4:36167951-36167970 | None:intergenic | 30.0% |
| !!! | CCCTTTGGTCATTTTTTTTT+AGG | - | chr3.4:36166979-36166998 | MS.gene89947:intron | 30.0% |
| !!! | TCCTTCTTCACTTTTTCAAA+TGG | - | chr3.4:36166596-36166615 | MS.gene89947:intron | 30.0% |
| AGACACATGAAGAAGAAATG+GGG | - | chr3.4:36166672-36166691 | MS.gene89947:CDS | 35.0% | |
| AGAGACACATGAAGAAGAAA+TGG | - | chr3.4:36166670-36166689 | MS.gene89947:CDS | 35.0% | |
| ATTTCTTAGCCCATAATTCC+GGG | + | chr3.4:36167562-36167581 | None:intergenic | 35.0% | |
| CAAGGGATGAAATTAATGGT+TGG | - | chr3.4:36166825-36166844 | MS.gene89947:intron | 35.0% | |
| GAAATGATAGCTGCAATCAT+AGG | - | chr3.4:36166853-36166872 | MS.gene89947:intron | 35.0% | |
| GAGACACATGAAGAAGAAAT+GGG | - | chr3.4:36166671-36166690 | MS.gene89947:CDS | 35.0% | |
| GATTTCTTAGCCCATAATTC+CGG | + | chr3.4:36167563-36167582 | None:intergenic | 35.0% | |
| GCCATTTGAAAAAGTGAAGA+AGG | + | chr3.4:36166600-36166619 | None:intergenic | 35.0% | |
| GGTTAACGCAATTTAGTAGA+TGG | - | chr3.4:36167064-36167083 | MS.gene89947:intron | 35.0% | |
| TATTGGTCAAGCTGCTTATA+GGG | - | chr3.4:36166701-36166720 | MS.gene89947:CDS | 35.0% | |
| TCAGAGATATGAAGATCATG+TGG | + | chr3.4:36167850-36167869 | None:intergenic | 35.0% | |
| TGAGGAGAAGTTATCATTGT+TGG | - | chr3.4:36166530-36166549 | MS.gene89947:intron | 35.0% | |
| TGATCATGTTGAAGAGATTG+AGG | - | chr3.4:36166512-36166531 | MS.gene89947:intron | 35.0% | |
| TGGTTAACAAGATCCTTATC+TGG | + | chr3.4:36167535-36167554 | None:intergenic | 35.0% | |
| TGTTATAGGTATCCTTCACA+TGG | - | chr3.4:36167757-36167776 | MS.gene89947:CDS | 35.0% | |
| TTATTGGTCAAGCTGCTTAT+AGG | - | chr3.4:36166700-36166719 | MS.gene89947:CDS | 35.0% | |
| ! | ATGGCATGTTGCTTCAAAAA+AGG | - | chr3.4:36166731-36166750 | MS.gene89947:CDS | 35.0% |
| ! | TGGCATGTTGCTTCAAAAAA+GGG | - | chr3.4:36166732-36166751 | MS.gene89947:CDS | 35.0% |
| !! | GTGTGTGAGTGATTACTTTT+GGG | - | chr3.4:36166647-36166666 | MS.gene89947:CDS | 35.0% |
| !! | TGCTTAAGTGTGTCATTTCA+TGG | - | chr3.4:36167458-36167477 | MS.gene89947:intron | 35.0% |
| !! | TGGTATCTTGCTATTGAAAC+TGG | - | chr3.4:36166906-36166925 | MS.gene89947:intron | 35.0% |
| !! | TTGCTTCAAAAAAGGGTGTT+GGG | - | chr3.4:36166739-36166758 | MS.gene89947:CDS | 35.0% |
| !!! | TACAATTTTGGTGTTGGTGT+TGG | - | chr3.4:36167317-36167336 | MS.gene89947:intron | 35.0% |
| !!! | TCTTCACTTTTTCAAATGGC+TGG | - | chr3.4:36166600-36166619 | MS.gene89947:intron | 35.0% |
| AACCAATGTCCCGGAATTAT+GGG | - | chr3.4:36167550-36167569 | MS.gene89947:intron | 40.0% | |
| AAGAAATGGGGTGGAGTTAT+TGG | - | chr3.4:36166684-36166703 | MS.gene89947:CDS | 40.0% | |
| AGGTATCTATGGAAACCCTT+TGG | - | chr3.4:36166964-36166983 | MS.gene89947:intron | 40.0% | |
| ATCACATAGAGATTCAGTGG+AGG | - | chr3.4:36167896-36167915 | MS.gene89947:CDS | 40.0% | |
| ATGCATTCCAAAGTTAGCTC+TGG | + | chr3.4:36166561-36166580 | None:intergenic | 40.0% | |
| ATTCCATGTTACACGGATCT+GGG | + | chr3.4:36168081-36168100 | None:intergenic | 40.0% | |
| CAGCATCATAGCAAGATAAC+AGG | + | chr3.4:36167368-36167387 | None:intergenic | 40.0% | |
| CTGCTTATAGGGAATGGAAA+TGG | - | chr3.4:36166712-36166731 | MS.gene89947:CDS | 40.0% | |
| GATCTTGTTAACCAATGTCC+CGG | - | chr3.4:36167541-36167560 | MS.gene89947:intron | 40.0% | |
| GCAATCACATAGAGATTCAG+TGG | - | chr3.4:36167893-36167912 | MS.gene89947:CDS | 40.0% | |
| GGAGAAAGGAACAAACCATA+AGG | + | chr3.4:36167937-36167956 | None:intergenic | 40.0% | |
| GTGTTGTAGAATGGTCATCT+TGG | - | chr3.4:36167339-36167358 | MS.gene89947:intron | 40.0% | |
| TAACCAATGTCCCGGAATTA+TGG | - | chr3.4:36167549-36167568 | MS.gene89947:intron | 40.0% | |
| TACAGAGTGTGGAATTCCAT+GGG | - | chr3.4:36167792-36167811 | MS.gene89947:CDS | 40.0% | |
| TCATGTGGAGAGATATCAAC+AGG | + | chr3.4:36167835-36167854 | None:intergenic | 40.0% | |
| TGAATCTCTATGTGATTGCC+AGG | + | chr3.4:36167892-36167911 | None:intergenic | 40.0% | |
| TGGTGTTTGCCATTCATTGA+GGG | - | chr3.4:36166620-36166639 | MS.gene89947:intron | 40.0% | |
| ! | CTATAACCGTGAGGTATCTA+TGG | - | chr3.4:36166953-36166972 | MS.gene89947:intron | 40.0% |
| ! | GGTGTGTGAGTGATTACTTT+TGG | - | chr3.4:36166646-36166665 | MS.gene89947:CDS | 40.0% |
| ! | GGTGTTGGGAGTCTTAAATA+TGG | - | chr3.4:36166753-36166772 | MS.gene89947:CDS | 40.0% |
| ! | GTTGCTTCAAAAAAGGGTGT+TGG | - | chr3.4:36166738-36166757 | MS.gene89947:CDS | 40.0% |
| ! | TTACCTTGCTAGAAGGGTAT+TGG | + | chr3.4:36167412-36167431 | None:intergenic | 40.0% |
| !! | ATGGCAAACAAAGTGGGTTA+TGG | - | chr3.4:36166772-36166791 | MS.gene89947:CDS | 40.0% |
| !! | CTCTTCTTTGGCCTTTTCAA+GGG | - | chr3.4:36166808-36166827 | MS.gene89947:intron | 40.0% |
| !! | TCTCTTCTTTGGCCTTTTCA+AGG | - | chr3.4:36166807-36166826 | MS.gene89947:intron | 40.0% |
| !! | TTGGTGTTGGTGTTGTAGAA+TGG | - | chr3.4:36167330-36167349 | MS.gene89947:intron | 40.0% |
| AGAAGAGAAGCTACAGAGTG+TGG | - | chr3.4:36167781-36167800 | MS.gene89947:CDS | 45.0% | |
| AGTGTGGAATTCCATGGGAA+AGG | - | chr3.4:36167797-36167816 | MS.gene89947:CDS | 45.0% | |
| CACATGAAGAAGAAATGGGG+TGG | - | chr3.4:36166675-36166694 | MS.gene89947:CDS | 45.0% | |
| CTACAGAGTGTGGAATTCCA+TGG | - | chr3.4:36167791-36167810 | MS.gene89947:CDS | 45.0% | |
| CTATTGAAACTGGCAGCTTC+TGG | - | chr3.4:36166916-36166935 | MS.gene89947:intron | 45.0% | |
| CTGGTGTTTGCCATTCATTG+AGG | - | chr3.4:36166619-36166638 | MS.gene89947:intron | 45.0% | |
| GAACCAATACCCTTCTAGCA+AGG | - | chr3.4:36167406-36167425 | MS.gene89947:intron | 45.0% | |
| GATTCCATGTTACACGGATC+TGG | + | chr3.4:36168082-36168101 | None:intergenic | 45.0% | |
| GCTTCTCTTCTTCCATGTGA+AGG | + | chr3.4:36167772-36167791 | None:intergenic | 45.0% | |
| GGGTTTCCATAGATACCTCA+CGG | + | chr3.4:36166962-36166981 | None:intergenic | 45.0% | |
| GTCAAGCTGCTTATAGGGAA+TGG | - | chr3.4:36166706-36166725 | MS.gene89947:CDS | 45.0% | |
| TCACGGTTATAGACTTGAGC+AGG | + | chr3.4:36166945-36166964 | None:intergenic | 45.0% | |
| TGCTCAAGTCTATAACCGTG+AGG | - | chr3.4:36166944-36166963 | MS.gene89947:intron | 45.0% | |
| TGTGGAGAGATATCAACAGG+AGG | + | chr3.4:36167832-36167851 | None:intergenic | 45.0% | |
| TTCCATGTTACACGGATCTG+GGG | + | chr3.4:36168080-36168099 | None:intergenic | 45.0% | |
| TTGCAGCTAACAGTATGGTG+TGG | + | chr3.4:36167239-36167258 | None:intergenic | 45.0% | |
| TTTGCCATTCATTGAGGGAG+AGG | - | chr3.4:36166625-36166644 | MS.gene89947:intron | 45.0% | |
| AGCCCATAATTCCGGGACAT+TGG | + | chr3.4:36167555-36167574 | None:intergenic | 50.0% | |
| CACACCTCTCCCTCAATGAA+TGG | + | chr3.4:36166632-36166651 | None:intergenic | 50.0% | |
| GGACTTGCCAGAGCTAACTT+TGG | - | chr3.4:36166551-36166570 | MS.gene89947:intron | 50.0% | |
| TTCCCCAGATCCGTGTAACA+TGG | - | chr3.4:36168075-36168094 | MS.gene89947:CDS | 50.0% | |
| ! | GGTGCTCTTAGCCTTTCCCA+TGG | + | chr3.4:36167811-36167830 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 36166477 | 36168105 | 36166477 | ID=MS.gene89947 |
| chr3.4 | mRNA | 36166477 | 36168105 | 36166477 | ID=MS.gene89947.t1;Parent=MS.gene89947 |
| chr3.4 | exon | 36167617 | 36168105 | 36167617 | ID=MS.gene89947.t1.exon1;Parent=MS.gene89947.t1 |
| chr3.4 | CDS | 36167617 | 36168105 | 36167617 | ID=cds.MS.gene89947.t1;Parent=MS.gene89947.t1 |
| chr3.4 | exon | 36167155 | 36167234 | 36167155 | ID=MS.gene89947.t1.exon2;Parent=MS.gene89947.t1 |
| chr3.4 | CDS | 36167155 | 36167234 | 36167155 | ID=cds.MS.gene89947.t1;Parent=MS.gene89947.t1 |
| chr3.4 | exon | 36166642 | 36166817 | 36166642 | ID=MS.gene89947.t1.exon3;Parent=MS.gene89947.t1 |
| chr3.4 | CDS | 36166642 | 36166817 | 36166642 | ID=cds.MS.gene89947.t1;Parent=MS.gene89947.t1 |
| chr3.4 | exon | 36166477 | 36166499 | 36166477 | ID=MS.gene89947.t1.exon4;Parent=MS.gene89947.t1 |
| chr3.4 | CDS | 36166477 | 36166499 | 36166477 | ID=cds.MS.gene89947.t1;Parent=MS.gene89947.t1 |
| Gene Sequence |
| Protein sequence |
