Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89975.t1 | XP_003606271.2 | 95.8 | 626 | 21 | 1 | 1 | 621 | 1 | 626 | 0.00E+00 | 1156.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89975.t1 | Q7DMA9 | 67.9 | 574 | 175 | 5 | 51 | 621 | 54 | 621 | 3.0e-225 | 782.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89975.t1 | G7JM35 | 95.8 | 626 | 21 | 1 | 1 | 621 | 1 | 626 | 0.0e+00 | 1156.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052072 | MS.gene89975 | 0.801347 | 9.40E-49 | -1.69E-46 |
MS.gene060937 | MS.gene89975 | 0.800483 | 1.41E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89975.t1 | MTR_4g055500 | 96.965 | 626 | 14 | 1 | 1 | 621 | 1 | 626 | 0.0 | 1253 |
MS.gene89975.t1 | MTR_8g080980 | 30.741 | 540 | 341 | 11 | 21 | 545 | 24 | 545 | 4.02e-64 | 221 |
MS.gene89975.t1 | MTR_7g053470 | 29.423 | 503 | 329 | 8 | 50 | 543 | 54 | 539 | 5.21e-59 | 207 |
MS.gene89975.t1 | MTR_1g017870 | 30.350 | 514 | 323 | 10 | 50 | 551 | 59 | 549 | 1.17e-54 | 195 |
MS.gene89975.t1 | MTR_8g012340 | 30.572 | 507 | 322 | 10 | 50 | 545 | 62 | 549 | 1.35e-54 | 196 |
MS.gene89975.t1 | MTR_1g017870 | 30.452 | 509 | 319 | 10 | 50 | 546 | 59 | 544 | 1.67e-54 | 195 |
MS.gene89975.t1 | MTR_1g017870 | 29.918 | 488 | 305 | 12 | 88 | 559 | 66 | 532 | 1.15e-45 | 170 |
MS.gene89975.t1 | MTR_1g017870 | 31.884 | 345 | 218 | 6 | 217 | 551 | 2 | 339 | 4.65e-37 | 141 |
MS.gene89975.t1 | MTR_1g017870 | 30.409 | 171 | 107 | 4 | 98 | 258 | 2 | 170 | 8.29e-12 | 67.4 |
MS.gene89975.t1 | MTR_1g017870 | 31.034 | 377 | 242 | 7 | 185 | 551 | 55 | 423 | 4.72e-37 | 143 |
MS.gene89975.t1 | MTR_1g017870 | 30.636 | 173 | 108 | 4 | 96 | 258 | 84 | 254 | 1.07e-11 | 67.8 |
MS.gene89975.t1 | MTR_1g017870 | 30.909 | 385 | 247 | 8 | 185 | 559 | 55 | 430 | 6.37e-37 | 144 |
MS.gene89975.t1 | MTR_1g017870 | 30.636 | 173 | 108 | 4 | 96 | 258 | 84 | 254 | 8.36e-12 | 68.2 |
MS.gene89975.t1 | MTR_1g017870 | 32.047 | 337 | 212 | 6 | 217 | 543 | 2 | 331 | 1.32e-36 | 140 |
MS.gene89975.t1 | MTR_1g017870 | 30.409 | 171 | 107 | 4 | 98 | 258 | 2 | 170 | 8.98e-12 | 67.4 |
MS.gene89975.t1 | MTR_8g038785 | 27.616 | 344 | 215 | 12 | 49 | 379 | 191 | 513 | 6.11e-22 | 100 |
MS.gene89975.t1 | MTR_8g038785 | 33.775 | 151 | 91 | 3 | 257 | 402 | 159 | 305 | 1.66e-14 | 77.0 |
MS.gene89975.t1 | MTR_8g038785 | 29.282 | 181 | 119 | 4 | 90 | 263 | 343 | 521 | 5.01e-14 | 75.5 |
MS.gene89975.t1 | MTR_4g019860 | 60.526 | 76 | 6 | 1 | 468 | 543 | 51 | 102 | 7.93e-20 | 85.9 |
MS.gene89975.t1 | MTR_4g019860 | 80.000 | 45 | 8 | 1 | 1 | 45 | 1 | 44 | 5.18e-14 | 69.3 |
MS.gene89975.t1 | MTR_4g039430 | 29.118 | 340 | 198 | 14 | 225 | 547 | 22 | 335 | 9.99e-20 | 92.0 |
MS.gene89975.t1 | MTR_7g059150 | 41.667 | 120 | 62 | 3 | 394 | 513 | 92 | 203 | 7.31e-18 | 84.3 |
MS.gene89975.t1 | MTR_2g090135 | 34.932 | 146 | 79 | 4 | 396 | 533 | 97 | 234 | 1.44e-14 | 74.7 |
MS.gene89975.t1 | MTR_5g080300 | 35.294 | 119 | 71 | 4 | 261 | 378 | 6 | 119 | 5.10e-13 | 68.6 |
MS.gene89975.t1 | MTR_8g010620 | 23.077 | 351 | 245 | 11 | 136 | 474 | 7 | 344 | 4.12e-12 | 68.6 |
MS.gene89975.t1 | MTR_8g008640 | 25.641 | 195 | 135 | 3 | 74 | 258 | 117 | 311 | 5.37e-12 | 69.3 |
MS.gene89975.t1 | MTR_8g010620 | 23.077 | 351 | 245 | 11 | 136 | 474 | 43 | 380 | 7.65e-12 | 68.2 |
MS.gene89975.t1 | MTR_2g090135 | 40.777 | 103 | 52 | 4 | 404 | 505 | 105 | 199 | 1.34e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89975.t1 | AT3G54010 | 69.887 | 621 | 177 | 5 | 7 | 621 | 5 | 621 | 0.0 | 890 |
MS.gene89975.t1 | AT3G54010 | 71.028 | 535 | 150 | 4 | 88 | 621 | 1 | 531 | 0.0 | 787 |
MS.gene89975.t1 | AT5G48570 | 30.392 | 510 | 328 | 8 | 47 | 545 | 64 | 557 | 3.06e-59 | 208 |
MS.gene89975.t1 | AT5G48570 | 29.787 | 235 | 139 | 8 | 157 | 379 | 50 | 270 | 9.07e-19 | 90.5 |
MS.gene89975.t1 | AT3G25230 | 29.470 | 509 | 332 | 8 | 47 | 545 | 56 | 547 | 6.49e-55 | 196 |
MS.gene89975.t1 | AT3G25230 | 29.470 | 509 | 332 | 8 | 47 | 545 | 56 | 547 | 6.77e-55 | 196 |
MS.gene89975.t1 | AT3G21640 | 29.766 | 299 | 176 | 11 | 265 | 546 | 48 | 329 | 4.42e-20 | 92.8 |
MS.gene89975.t1 | AT4G30480 | 33.333 | 144 | 88 | 2 | 371 | 514 | 79 | 214 | 2.20e-14 | 74.3 |
MS.gene89975.t1 | AT3G55520 | 35.537 | 121 | 68 | 4 | 261 | 378 | 6 | 119 | 3.69e-13 | 68.9 |
MS.gene89975.t1 | AT3G55520 | 35.537 | 121 | 68 | 4 | 261 | 378 | 6 | 119 | 3.69e-13 | 68.9 |
MS.gene89975.t1 | AT3G55520 | 35.537 | 121 | 68 | 4 | 261 | 378 | 6 | 119 | 3.69e-13 | 68.9 |
MS.gene89975.t1 | AT4G30480 | 34.109 | 129 | 77 | 2 | 371 | 499 | 79 | 199 | 2.92e-12 | 66.6 |
MS.gene89975.t1 | AT2G42580 | 26.630 | 184 | 94 | 5 | 326 | 506 | 407 | 552 | 1.31e-11 | 68.2 |
MS.gene89975.t1 | AT3G58620 | 32.787 | 122 | 60 | 3 | 392 | 508 | 441 | 545 | 3.38e-11 | 66.6 |
MS.gene89975.t1 | AT3G58620 | 32.787 | 122 | 60 | 3 | 392 | 508 | 441 | 545 | 3.43e-11 | 66.6 |
Find 153 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGTACCTCACCATCTTTC+TGG | 0.080214 | 4.2:+47979610 | None:intergenic |
CAACCATTGGATTTCTGTTC+TGG | 0.258493 | 4.2:-47984657 | MS.gene89975:CDS |
CTGTTCTCAATGAAGAAAAT+AGG | 0.258621 | 4.2:-47984713 | MS.gene89975:CDS |
TTTCCAAATGTGAAGAAGTA+TGG | 0.269003 | 4.2:+47987492 | None:intergenic |
AAAGCTCGGAAACAATTTAA+AGG | 0.279911 | 4.2:-47979708 | MS.gene89975:CDS |
CCAGGTTATCACTGATGATT+TGG | 0.300295 | 4.2:-47988539 | MS.gene89975:intron |
TTACCCAATACATGTCTTAT+CGG | 0.302315 | 4.2:+47989450 | None:intergenic |
GGGGTTGGTTTGCTCACTTT+TGG | 0.308176 | 4.2:-47979521 | MS.gene89975:CDS |
GAACCATACTTCTTCACATT+TGG | 0.309966 | 4.2:-47987495 | MS.gene89975:CDS |
ATTTCAGCAAAGACAGTTAC+TGG | 0.312107 | 4.2:-47987546 | MS.gene89975:CDS |
TGATTTGGAAGTGGTTAAAA+AGG | 0.314360 | 4.2:-47988524 | MS.gene89975:intron |
CTATCAGTTCAATTTCAAAA+TGG | 0.345517 | 4.2:+47988961 | None:intergenic |
GTCCATCGAGACTTGTAATA+AGG | 0.349561 | 4.2:-47980671 | MS.gene89975:intron |
TGTAGTTATTACAGGGTAAC+AGG | 0.351522 | 4.2:-47982325 | MS.gene89975:intron |
ATCCCCATTTCAAGACCTTT+AGG | 0.352401 | 4.2:+47987154 | None:intergenic |
GATAGCATGCAGCAACATTC+AGG | 0.352956 | 4.2:+47980716 | None:intergenic |
GTTTAAGATGAATTATAGTA+TGG | 0.360538 | 4.2:+47979452 | None:intergenic |
TTCACTTCATAAGGTTCTCT+TGG | 0.369019 | 4.2:+47987667 | None:intergenic |
TACCAAGCCTTCACTTCATA+AGG | 0.369742 | 4.2:+47987658 | None:intergenic |
AGCAAATCCTGCGCACGTTA+AGG | 0.369791 | 4.2:-47980205 | MS.gene89975:CDS |
ATGAAGCCTCAGTTGCATTA+TGG | 0.375020 | 4.2:-47989038 | MS.gene89975:CDS |
ACTTCACCCTTCAACATTGT+TGG | 0.382173 | 4.2:+47989393 | None:intergenic |
GGTAAAAGCAAGATGCTATT+GGG | 0.385037 | 4.2:-47989432 | MS.gene89975:CDS |
TCAGTAGGTGGTTTCTTCTT+CGG | 0.390342 | 4.2:+47991445 | None:intergenic |
CTCATCAGATGGAACGAATT+CGG | 0.398902 | 4.2:-47979580 | MS.gene89975:CDS |
TGTACGTGAAGGGGAGGGTT+GGG | 0.402568 | 4.2:-47987695 | MS.gene89975:CDS |
ATGCTATTGGGCTTGCTAGA+AGG | 0.404390 | 4.2:-47989420 | MS.gene89975:CDS |
AGCAAGGGCTGATTTCAAAA+TGG | 0.405604 | 4.2:-47980133 | MS.gene89975:intron |
GGGTAAAAGCAAGATGCTAT+TGG | 0.407059 | 4.2:-47989433 | MS.gene89975:CDS |
GTGAGGGACGTGCTTGGAGA+TGG | 0.416863 | 4.2:-47985188 | MS.gene89975:CDS |
TGTTCTCAATGAAGAAAATA+GGG | 0.417407 | 4.2:-47984712 | MS.gene89975:CDS |
AAACCATCAGGAGCAGAAAC+AGG | 0.421852 | 4.2:+47989002 | None:intergenic |
GTACCTAAAGGTCTTGAAAT+GGG | 0.422391 | 4.2:-47987157 | MS.gene89975:CDS |
ACTTCAGAATCTTCTATAAC+AGG | 0.425096 | 4.2:+47987058 | None:intergenic |
GAACAAGCTCCACTTCAAAC+TGG | 0.425332 | 4.2:+47987035 | None:intergenic |
GCAAATCCTGCGCACGTTAA+GGG | 0.429054 | 4.2:-47980204 | MS.gene89975:CDS |
AGCACCGATAAGACATGTAT+TGG | 0.434358 | 4.2:-47989454 | MS.gene89975:CDS |
TGCACCTGGTGCAGATCAAA+GGG | 0.438048 | 4.2:-47979541 | MS.gene89975:CDS |
CGTCGGATTCGTGATGGAAA+AGG | 0.442344 | 4.2:-47985152 | MS.gene89975:intron |
TCACTCCACAATACGAACTT+TGG | 0.443230 | 4.2:-47990266 | MS.gene89975:CDS |
GGTACCTAAAGGTCTTGAAA+TGG | 0.448036 | 4.2:-47987158 | MS.gene89975:CDS |
AAATGGAGTTCATCATCCTT+AGG | 0.451248 | 4.2:+47988978 | None:intergenic |
TTGTACGTGAAGGGGAGGGT+TGG | 0.454454 | 4.2:-47987696 | MS.gene89975:CDS |
AGGAAGAAGAAAATTGTGGC+TGG | 0.460460 | 4.2:-47991412 | MS.gene89975:CDS |
TTAACTTCTGCAATTTCTCC+AGG | 0.461518 | 4.2:+47979669 | None:intergenic |
GGGCTATTTGACAAGAAGCC+TGG | 0.462556 | 4.2:-47979687 | MS.gene89975:CDS |
AAGCTCGGAAACAATTTAAA+GGG | 0.463479 | 4.2:-47979707 | MS.gene89975:CDS |
CCGAGGGTGCTCATATTCAA+TGG | 0.464333 | 4.2:-47984187 | MS.gene89975:CDS |
CCAGAAAGATGGTGAGGTAC+AGG | 0.470145 | 4.2:-47979610 | MS.gene89975:CDS |
CATACCTCCATGTTCGGATC+GGG | 0.471700 | 4.2:+47990222 | None:intergenic |
TGTCCTGTTTCTGCTCCTGA+TGG | 0.471971 | 4.2:-47989005 | MS.gene89975:CDS |
AAATCGCATACCTCCATGTT+CGG | 0.475444 | 4.2:+47990216 | None:intergenic |
TCGTCGTGGAATGGCCTACA+TGG | 0.476188 | 4.2:-47980175 | MS.gene89975:CDS |
TTTCCTTCCTCGTCGTCTTG+TGG | 0.479350 | 4.2:+47980910 | None:intergenic |
TGCTGCATGCTATCTGAAGT+TGG | 0.480195 | 4.2:-47980707 | MS.gene89975:CDS |
GCACCCTCGGGAACATTTGA+AGG | 0.480687 | 4.2:+47984200 | None:intergenic |
TTGGATTTCTGTTCTGGAGA+AGG | 0.484862 | 4.2:-47984651 | MS.gene89975:CDS |
AGGAATTCCAACAATGTTGA+AGG | 0.487638 | 4.2:-47989400 | MS.gene89975:CDS |
TGATAACGATGGCCAACCAT+TGG | 0.493123 | 4.2:-47984670 | MS.gene89975:CDS |
CTGCACCTGGTGCAGATCAA+AGG | 0.493713 | 4.2:-47979542 | MS.gene89975:CDS |
CTCTTCTCATCCTCAGTAGG+TGG | 0.494720 | 4.2:+47991433 | None:intergenic |
AACTTGTCATAAGCATAGTC+TGG | 0.495307 | 4.2:+47984368 | None:intergenic |
AACCTTATGAAGTGAAGGCT+TGG | 0.496665 | 4.2:-47987660 | MS.gene89975:intron |
CCATTGAATATGAGCACCCT+CGG | 0.504418 | 4.2:+47984187 | None:intergenic |
GCACCGATAAGACATGTATT+GGG | 0.505402 | 4.2:-47989453 | MS.gene89975:CDS |
TGCAAAGGCAAAGTATGAAA+AGG | 0.505520 | 4.2:-47982276 | MS.gene89975:intron |
CGAGGGTGCTCATATTCAAT+GGG | 0.507803 | 4.2:-47984186 | MS.gene89975:CDS |
AACTTTGGATGGAGTAGTTG+TGG | 0.513291 | 4.2:-47990251 | MS.gene89975:CDS |
TAGTGTAGGTTGTACGTGAA+GGG | 0.513636 | 4.2:-47987705 | MS.gene89975:intron |
GTGACAAGAGCCATCTCTCC+AGG | 0.518680 | 4.2:+47984398 | None:intergenic |
TTCTGAAGTCCAGTTTGAAG+TGG | 0.519155 | 4.2:-47987044 | MS.gene89975:CDS |
CATGAAGTAGACTGTCATGA+AGG | 0.520378 | 4.2:+47984751 | None:intergenic |
TCTACTTCATGTTCATTACA+AGG | 0.522997 | 4.2:-47984739 | MS.gene89975:CDS |
GCTGCATGCTATCTGAAGTT+GGG | 0.526963 | 4.2:-47980706 | MS.gene89975:CDS |
TGAGGGACGTGCTTGGAGAT+GGG | 0.527732 | 4.2:-47985187 | MS.gene89975:CDS |
TGTGTTCGTCTGATGCTACC+TGG | 0.528932 | 4.2:-47984416 | MS.gene89975:CDS |
TATCACTGATGATTTGGAAG+TGG | 0.530670 | 4.2:-47988533 | MS.gene89975:CDS |
TAACAGGTGAGGGACGTGCT+TGG | 0.530806 | 4.2:-47985194 | MS.gene89975:intron |
TTCCTCTTCTCATCCTCAGT+AGG | 0.536437 | 4.2:+47991430 | None:intergenic |
GTAGGTGGTTTCTTCTTCGG+TGG | 0.538662 | 4.2:+47991448 | None:intergenic |
GGGTCTTTATCGTCGTGGAA+TGG | 0.540148 | 4.2:-47980184 | MS.gene89975:CDS |
TTAGTGTAGGTTGTACGTGA+AGG | 0.541529 | 4.2:-47987706 | MS.gene89975:intron |
ACAAGTGAAATCCAGAAAGA+TGG | 0.542112 | 4.2:-47979621 | MS.gene89975:CDS |
TCCACAATACGAACTTTGGA+TGG | 0.549115 | 4.2:-47990262 | MS.gene89975:CDS |
GAAGAGGAAGAAGAAAATTG+TGG | 0.550121 | 4.2:-47991416 | MS.gene89975:CDS |
TACCTTATTACAAGTCTCGA+TGG | 0.553081 | 4.2:+47980669 | None:intergenic |
GGAAGAAGAAAATTGTGGCT+GGG | 0.556816 | 4.2:-47991411 | MS.gene89975:CDS |
GGTAACAGGTTGTTCAAAGA+AGG | 0.557236 | 4.2:-47982311 | MS.gene89975:CDS |
TCATCCTTAGGAAAACCATC+AGG | 0.563133 | 4.2:+47988990 | None:intergenic |
AAGAGAACCTTATGAAGTGA+AGG | 0.564476 | 4.2:-47987665 | MS.gene89975:CDS |
AACAATGTTGAAGGGTGAAG+TGG | 0.566507 | 4.2:-47989391 | MS.gene89975:CDS |
TCCATCCAAAGTTCGTATTG+TGG | 0.569700 | 4.2:+47990261 | None:intergenic |
GATTCACATGAAGCTGCACC+TGG | 0.572069 | 4.2:-47979555 | MS.gene89975:CDS |
CAGAACAGAAATCCAATGGT+TGG | 0.573852 | 4.2:+47984658 | None:intergenic |
AAAATCTCCATTGCCCATGT+AGG | 0.574139 | 4.2:+47980161 | None:intergenic |
CTGGTGCAGATCAAAGGGGT+TGG | 0.576226 | 4.2:-47979536 | MS.gene89975:CDS |
ATGAAGTAGACTGTCATGAA+GGG | 0.577080 | 4.2:+47984752 | None:intergenic |
TGATACACTCAGGTACCTAA+AGG | 0.577159 | 4.2:-47987169 | MS.gene89975:intron |
CATTGAATATGAGCACCCTC+GGG | 0.577690 | 4.2:+47984188 | None:intergenic |
GCATACCTCCATGTTCGGAT+CGG | 0.578773 | 4.2:+47990221 | None:intergenic |
GAATCTACCCGATCCGAACA+TGG | 0.578783 | 4.2:-47990229 | MS.gene89975:CDS |
ATGCTTATGACAAGTTTCCA+AGG | 0.579653 | 4.2:-47984361 | MS.gene89975:intron |
ATAAAACGTCGGATTCGTGA+TGG | 0.581465 | 4.2:-47985158 | MS.gene89975:CDS |
AACAGGCATCAGAGGAGACT+CGG | 0.581482 | 4.2:+47987075 | None:intergenic |
AGTGTAGGTTGTACGTGAAG+GGG | 0.582361 | 4.2:-47987704 | MS.gene89975:intron |
AAAACTGAAGCAGAAAGAGC+AGG | 0.583103 | 4.2:-47979977 | MS.gene89975:intron |
TCCCTATTACAGGACTGGAC+AGG | 0.583776 | 4.2:-47983690 | MS.gene89975:intron |
ATTACAGGACTGGACAGGAA+TGG | 0.584353 | 4.2:-47983685 | MS.gene89975:intron |
GGAATGGCCTACATGGGCAA+TGG | 0.584398 | 4.2:-47980168 | MS.gene89975:CDS |
AGGAAAATATGAACTTGCAA+AGG | 0.584639 | 4.2:-47982291 | MS.gene89975:CDS |
CTTCACATTTGGAAAATCAG+AGG | 0.586334 | 4.2:-47987484 | MS.gene89975:intron |
TAAAGACCCTTAACGTGCGC+AGG | 0.589178 | 4.2:+47980198 | None:intergenic |
CAACCCCTTTGATCTGCACC+AGG | 0.592304 | 4.2:+47979537 | None:intergenic |
TAGGTTGTACGTGAAGGGGA+GGG | 0.592925 | 4.2:-47987700 | MS.gene89975:CDS |
TCTGATGCTACCTGGAGAGA+TGG | 0.593692 | 4.2:-47984408 | MS.gene89975:CDS |
CAGGAACAAGACTCATCAGA+TGG | 0.594852 | 4.2:-47979591 | MS.gene89975:CDS |
ACACACAATTCAAATCCCTC+TGG | 0.596542 | 4.2:+47984434 | None:intergenic |
AAAGGTCTTGAAATGGGGAT+CGG | 0.596604 | 4.2:-47987151 | MS.gene89975:CDS |
TCTTCTATAACAGGCATCAG+AGG | 0.600715 | 4.2:+47987067 | None:intergenic |
GTAGGTTGTACGTGAAGGGG+AGG | 0.602480 | 4.2:-47987701 | MS.gene89975:intron |
CAGGCCTTCAAATGTTCCCG+AGG | 0.604437 | 4.2:-47984204 | MS.gene89975:CDS |
ATGAAAGCTTTGATTAGACC+TGG | 0.604620 | 4.2:-47991382 | MS.gene89975:CDS |
TACCTAAAGGTCTTGAAATG+GGG | 0.605676 | 4.2:-47987156 | MS.gene89975:CDS |
GGATGGGAATCACCACCACC+AGG | 0.608783 | 4.2:+47991364 | None:intergenic |
TGAAATGGGGATCGGAACAA+TGG | 0.613883 | 4.2:-47987143 | MS.gene89975:CDS |
CGTCGTGGAATGGCCTACAT+GGG | 0.615183 | 4.2:-47980174 | MS.gene89975:CDS |
AATCCACAAGACGACGAGGA+AGG | 0.617092 | 4.2:-47980913 | MS.gene89975:CDS |
GGAATTCCAACAATGTTGAA+GGG | 0.617518 | 4.2:-47989399 | MS.gene89975:CDS |
CTACTTCATGTTCATTACAA+GGG | 0.619652 | 4.2:-47984738 | MS.gene89975:CDS |
CACCTACTGAGGATGAGAAG+AGG | 0.620116 | 4.2:-47991432 | MS.gene89975:CDS |
TTGATCATGTCACACACAGA+AGG | 0.621118 | 4.2:-47987519 | MS.gene89975:CDS |
AGGAAGTTGAGAAGAAAGCT+CGG | 0.621219 | 4.2:-47979722 | MS.gene89975:CDS |
TTTCAGCAAAGACAGTTACT+GGG | 0.622177 | 4.2:-47987545 | MS.gene89975:CDS |
GTTGAAGGGTGAAGTGGCAA+TGG | 0.626370 | 4.2:-47989385 | MS.gene89975:intron |
AGGCCTTCAAATGTTCCCGA+GGG | 0.633156 | 4.2:-47984203 | MS.gene89975:CDS |
GTTAAGGGTCTTTATCGTCG+TGG | 0.634075 | 4.2:-47980189 | MS.gene89975:CDS |
TCTCCAGAACAGAAATCCAA+TGG | 0.635723 | 4.2:+47984654 | None:intergenic |
TGAAATCCAGAAAGATGGTG+AGG | 0.639201 | 4.2:-47979616 | MS.gene89975:CDS |
TGAAGTAGACTGTCATGAAG+GGG | 0.639682 | 4.2:+47984753 | None:intergenic |
TCCTCACCATAATGCAACTG+AGG | 0.639794 | 4.2:+47989032 | None:intergenic |
GAAGAAGAAACCACCTACTG+AGG | 0.651305 | 4.2:-47991443 | MS.gene89975:CDS |
AGCTGAAAATATCAGAAACA+CGG | 0.668935 | 4.2:-47983640 | MS.gene89975:intron |
GCTTTGATTAGACCTGGTGG+TGG | 0.676017 | 4.2:-47991376 | MS.gene89975:intron |
GCCTCAGTTGCATTATGGTG+AGG | 0.691219 | 4.2:-47989033 | MS.gene89975:CDS |
GAAGTAGACTGTCATGAAGG+GGG | 0.694116 | 4.2:+47984754 | None:intergenic |
TTGTCATAAGCATAGTCTGG+CGG | 0.694819 | 4.2:+47984371 | None:intergenic |
ATCAGATGGAACGAATTCGG+AGG | 0.697245 | 4.2:-47979577 | MS.gene89975:CDS |
GACACGAGAGTTGATAACGA+TGG | 0.709689 | 4.2:-47984681 | MS.gene89975:CDS |
TGTTAATCCACAAGACGACG+AGG | 0.718917 | 4.2:-47980917 | MS.gene89975:CDS |
AAAGCTTTGATTAGACCTGG+TGG | 0.727816 | 4.2:-47991379 | MS.gene89975:CDS |
TCTACCCGATCCGAACATGG+AGG | 0.741236 | 4.2:-47990226 | MS.gene89975:intron |
ATGGGCGCCTGATAAAACGT+CGG | 0.752983 | 4.2:-47985169 | MS.gene89975:CDS |
GCACCTGGTGCAGATCAAAG+GGG | 0.753578 | 4.2:-47979540 | MS.gene89975:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 47979464 | 47991512 | 47979464 | ID=MS.gene89975 |
chr4.2 | mRNA | 47979464 | 47991512 | 47979464 | ID=MS.gene89975.t1;Parent=MS.gene89975 |
chr4.2 | exon | 47991377 | 47991512 | 47991377 | ID=MS.gene89975.t1.exon1;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47991377 | 47991512 | 47991377 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47991137 | 47991150 | 47991137 | ID=MS.gene89975.t1.exon2;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47991137 | 47991150 | 47991137 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47990227 | 47990296 | 47990227 | ID=MS.gene89975.t1.exon3;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47990227 | 47990296 | 47990227 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47989386 | 47989483 | 47989386 | ID=MS.gene89975.t1.exon4;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47989386 | 47989483 | 47989386 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47988944 | 47989066 | 47988944 | ID=MS.gene89975.t1.exon5;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47988944 | 47989066 | 47988944 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47988525 | 47988557 | 47988525 | ID=MS.gene89975.t1.exon6;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47988525 | 47988557 | 47988525 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47987661 | 47987719 | 47987661 | ID=MS.gene89975.t1.exon7;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47987661 | 47987719 | 47987661 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47987485 | 47987569 | 47987485 | ID=MS.gene89975.t1.exon8;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47987485 | 47987569 | 47987485 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47987024 | 47987179 | 47987024 | ID=MS.gene89975.t1.exon9;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47987024 | 47987179 | 47987024 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47985153 | 47985210 | 47985153 | ID=MS.gene89975.t1.exon10;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47985153 | 47985210 | 47985153 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47984647 | 47984795 | 47984647 | ID=MS.gene89975.t1.exon11;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47984647 | 47984795 | 47984647 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47984362 | 47984459 | 47984362 | ID=MS.gene89975.t1.exon12;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47984362 | 47984459 | 47984362 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47984154 | 47984223 | 47984154 | ID=MS.gene89975.t1.exon13;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47984154 | 47984223 | 47984154 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47983641 | 47983700 | 47983641 | ID=MS.gene89975.t1.exon14;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47983641 | 47983700 | 47983641 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47982277 | 47982333 | 47982277 | ID=MS.gene89975.t1.exon15;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47982277 | 47982333 | 47982277 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47980891 | 47980959 | 47980891 | ID=MS.gene89975.t1.exon16;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47980891 | 47980959 | 47980891 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47980672 | 47980749 | 47980672 | ID=MS.gene89975.t1.exon17;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47980672 | 47980749 | 47980672 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47980134 | 47980235 | 47980134 | ID=MS.gene89975.t1.exon18;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47980134 | 47980235 | 47980134 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47979978 | 47980049 | 47979978 | ID=MS.gene89975.t1.exon19;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47979978 | 47980049 | 47979978 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
chr4.2 | exon | 47979464 | 47979742 | 47979464 | ID=MS.gene89975.t1.exon20;Parent=MS.gene89975.t1 |
chr4.2 | CDS | 47979464 | 47979742 | 47979464 | ID=cds.MS.gene89975.t1;Parent=MS.gene89975.t1 |
Gene Sequence |
Protein sequence |