AlfalfaGEDB | MS.gene90094

M. sativa cultivar XinJiangDaYe / MS.gene90094

KEGG: K03768
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90094.t1	XP_013470516.1	97.9	97	2	0	42	138	51	147	6.00E-45	190.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90094.t1	Q9ASS6	78.8	85	18	0	54	138	76	160	6.9e-34	145.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90094.t1	I3S7Z5	97.9	97	2	0	42	138	51	147	4.3e-45	190.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053836	MS.gene90094	0.800251	1.57E-48	-1.69E-46
MS.gene055422	MS.gene90094	0.807038	6.14E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90094.t1	MTR_1g117010	87.755	147	6	2	2	138	3	147	1.30e-81	242
MS.gene90094.t1	MTR_1g117010	87.755	147	6	2	2	138	3	147	1.30e-81	242
MS.gene90094.t1	MTR_1g085560	67.391	92	27	1	54	145	71	159	3.22e-34	121
MS.gene90094.t1	MTR_7g110980	53.535	99	43	1	40	138	68	163	1.56e-29	109
MS.gene90094.t1	MTR_3g463900	56.818	88	28	2	58	138	24	108	9.37e-24	93.2
MS.gene90094.t1	MTR_3g070500	48.246	114	35	4	46	138	28	138	1.83e-23	91.3
MS.gene90094.t1	MTR_3g070500	48.246	114	35	4	46	138	28	138	2.39e-23	90.9
MS.gene90094.t1	MTR_3g070500	48.246	114	35	4	46	138	28	138	3.51e-23	91.3
MS.gene90094.t1	MTR_3g070500	48.246	114	35	4	46	138	28	138	8.74e-23	91.3
MS.gene90094.t1	MTR_3g117750	57.143	77	23	2	69	138	13	86	2.57e-21	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90094.t1	AT5G13120	78.824	85	18	0	54	138	76	160	4.00e-44	147
MS.gene90094.t1	AT5G13120	78.824	85	18	0	54	138	72	156	4.18e-44	147
MS.gene90094.t1	AT3G62030	57.692	104	40	2	43	145	69	169	2.71e-33	119
MS.gene90094.t1	AT3G62030	56.311	103	42	1	43	145	69	168	3.21e-33	119
MS.gene90094.t1	AT3G62030	57.692	104	40	2	43	145	122	222	9.81e-33	119
MS.gene90094.t1	AT5G58710	60.494	81	22	2	65	138	32	109	3.89e-25	96.7
MS.gene90094.t1	AT2G29960	61.728	81	21	2	65	138	29	106	1.65e-24	95.1
MS.gene90094.t1	AT2G29960	61.728	81	21	2	65	138	29	106	1.65e-24	95.1
MS.gene90094.t1	AT2G29960	61.728	81	21	2	65	138	29	106	1.92e-24	94.7
MS.gene90094.t1	AT3G55920	46.903	113	36	5	44	138	27	133	7.15e-22	88.6

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Find 50 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGAGGGCAGTGGAAAA+TGG	0.408575	1.4:-88669602	MS.gene90094:CDS
AAGAAGCATCTCCGTCGGGG+TGG	0.659605	1.4:-88669678	MS.gene90094:CDS
AAGGACTTCATGATTCAAGG+AGG	0.745105	1.4:-88669365	MS.gene90094:CDS
AATCCAGTTGGGAAGCTGGT+TGG	0.562899	1.4:-88669506	MS.gene90094:CDS
ACAAGTGAAAGTGAGGGCAG+TGG	0.614839	1.4:-88669609	MS.gene90094:CDS
ACGACGACAAGTGAAAGTGA+GGG	0.708194	1.4:-88669615	MS.gene90094:CDS
ACTGGAGGCAAAAGTATCTC+TGG	0.489609	1.4:-88669244	MS.gene90094:CDS
AGCCCTTCTCACTGGTGGAA+AGG	0.493291	1.4:+88669423	None:intergenic
AGGATTGTGATAGGACTCTT+TGG	0.436041	1.4:-88669482	MS.gene90094:CDS
ATCAAGGACTTCATGATTCA+AGG	0.494593	1.4:-88669368	MS.gene90094:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGATTGATTGTCTTGGT+TGG	-	chr1.4:88669343-88669362	MS.gene90094:CDS	30.0%
ATTGATTGATTGTCTTGGTT+GGG	-	chr1.4:88669344-88669363	MS.gene90094:CDS	30.0%
ATCAAGGACTTCATGATTCA+AGG	-	chr1.4:88669722-88669741	MS.gene90094:intron	35.0%
ATTATCAGTGAGAAAAGTGG+CGG	+	chr1.4:88669262-88669281	None:intergenic	35.0%
CTATCTATCTATCTATCGCA+GGG	-	chr1.4:88669822-88669841	MS.gene90094:intron	35.0%
TCTATCTATCTATCTATCGC+AGG	-	chr1.4:88669821-88669840	MS.gene90094:intron	35.0%
AAGGACTTCATGATTCAAGG+AGG	-	chr1.4:88669725-88669744	MS.gene90094:intron	40.0%
AGGATTGTGATAGGACTCTT+TGG	-	chr1.4:88669608-88669627	MS.gene90094:CDS	40.0%
CAAGGAGGAGACTTTGATAA+AGG	-	chr1.4:88669740-88669759	MS.gene90094:intron	40.0%
AAAGTGAGGGCAGTGGAAAA+TGG	-	chr1.4:88669488-88669507	MS.gene90094:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	88669226	88669886	88669226	ID=MS.gene90094
chr1.4	mRNA	88669226	88669886	88669226	ID=MS.gene90094.t1;Parent=MS.gene90094
chr1.4	exon	88669866	88669886	88669866	ID=MS.gene90094.t1.exon1;Parent=MS.gene90094.t1
chr1.4	CDS	88669866	88669886	88669866	ID=cds.MS.gene90094.t1;Parent=MS.gene90094.t1
chr1.4	exon	88669226	88669738	88669226	ID=MS.gene90094.t1.exon2;Parent=MS.gene90094.t1
chr1.4	CDS	88669226	88669738	88669226	ID=cds.MS.gene90094.t1;Parent=MS.gene90094.t1

Gene Sequence

>MS.gene90094

ATGGCTGTTGCTGCATTCAATGTTACTACAACACCGCCACTTTTCTCACTGATAATATATATATATATATATATTTTCCATTACTTAAATTTAATTGATGTTGAATTCATTTTTATTAATTGATTGATTGTCTTGGTTGGGTGGTCAGTCAAATGTTGTTGCTCTGAATCCTAATCCTAACCCTAAAAGAAGCATCTCCGTCGGGGTGGTTAGGTCCCGAGGTGTGGGTGTGAAACTAGCAGTAGGAGTACGACGACAAGTGAAAGTGAGGGCAGTGGAAAATGGCAGTAGTTCAGAGGAGAAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCGCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCAGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGTATGTATCTCTCTATCTATCGCTATCTCCTTCCTTTTTTTATTCATCAACTTATCTATCTATCTATCTATCGCAGGGAACTGGAGGCAAAAGTATCTCTGGTCGTACTTTCAAAGATGA

Protein sequence

>MS.gene90094.t1

MAVAAFNSNVVALNPNPNPKRSISVGVVRSRGVGVKLAVGVRRQVKVRAVENGSSSEEKVIVQSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTSEKGFGYKSSTFHRVIKDFMIQGGDFDKGNVCISLSIAISFLFLFINLSIYLSIAGNWRQKYLWSYFQR