Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90098.t1 | XP_013470514.1 | 97.9 | 1030 | 19 | 1 | 1 | 1030 | 1 | 1027 | 0.00E+00 | 1862.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90098.t1 | F4IRR2 | 70.9 | 1031 | 289 | 3 | 5 | 1028 | 8 | 1034 | 0.0e+00 | 1405.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90098.t1 | A0A072VRZ0 | 97.9 | 1030 | 19 | 1 | 1 | 1030 | 1 | 1027 | 0.0e+00 | 1862.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049243 | MS.gene90098 | 0.811694 | 6.16E-51 | -1.69E-46 |
| MS.gene050894 | MS.gene90098 | 0.814809 | 1.27E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90098.t1 | MTR_1g116957 | 97.767 | 1030 | 20 | 1 | 1 | 1030 | 1 | 1027 | 0.0 | 2073 |
| MS.gene90098.t1 | MTR_7g021500 | 79.864 | 1033 | 195 | 5 | 4 | 1030 | 6 | 1031 | 0.0 | 1675 |
| MS.gene90098.t1 | MTR_7g021500 | 80.155 | 1033 | 193 | 5 | 4 | 1030 | 6 | 1032 | 0.0 | 1670 |
| MS.gene90098.t1 | MTR_7g107210 | 70.769 | 130 | 21 | 2 | 860 | 989 | 62 | 174 | 3.72e-35 | 132 |
| MS.gene90098.t1 | MTR_7g107210 | 92.157 | 51 | 2 | 1 | 731 | 779 | 1 | 51 | 1.78e-23 | 99.0 |
| MS.gene90098.t1 | MTR_7g107220 | 85.714 | 49 | 7 | 0 | 604 | 652 | 12 | 60 | 1.57e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90098.t1 | AT2G31660 | 70.406 | 1034 | 289 | 6 | 5 | 1028 | 8 | 1034 | 0.0 | 1479 |
| MS.gene90098.t1 | AT3G59020 | 69.603 | 1033 | 293 | 6 | 4 | 1028 | 7 | 1026 | 0.0 | 1428 |
| MS.gene90098.t1 | AT3G59020 | 69.536 | 1034 | 293 | 6 | 4 | 1028 | 7 | 1027 | 0.0 | 1423 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATAAATTACCAAATTT+TGG | 0.144050 | 1.4:-88574906 | None:intergenic |
| TGTTAACATGCTACGCATTA+TGG | 0.175977 | 1.4:-88575186 | None:intergenic |
| GCAGTCCTGTTGGCCATCTT+AGG | 0.178159 | 1.4:+88573656 | MS.gene90098:CDS |
| GCATTATGCGGGGAAGATTT+TGG | 0.199329 | 1.4:+88572785 | MS.gene90098:CDS |
| ACGCTCAAGTTCAGATTTAT+AGG | 0.205041 | 1.4:-88573602 | None:intergenic |
| CATCAGAAATCTTCAATCTT+TGG | 0.212439 | 1.4:+88576824 | MS.gene90098:CDS |
| CAACAAAGGCTGCTGCATTT+TGG | 0.228833 | 1.4:+88575015 | MS.gene90098:intron |
| TCTTGACTTCTTGCAGCATT+TGG | 0.257051 | 1.4:-88576849 | None:intergenic |
| AGTTTATTCTGCAGATATTA+TGG | 0.266161 | 1.4:+88575907 | MS.gene90098:intron |
| CTTCTCCCTTCGCTCCTTGA+TGG | 0.266476 | 1.4:+88574697 | MS.gene90098:CDS |
| GATGGAGCTCTTCTTGCTAT+TGG | 0.266710 | 1.4:+88573547 | MS.gene90098:CDS |
| ACTTGGGCTATGCCAAAATT+TGG | 0.272370 | 1.4:+88574894 | MS.gene90098:CDS |
| CCTTGGTTTAACATCCTTGC+TGG | 0.273246 | 1.4:+88577065 | MS.gene90098:CDS |
| CCACCAGTCCTCTGCAGTTT+AGG | 0.276869 | 1.4:-88576234 | None:intergenic |
| TCTCAGATCAGAACAATTTC+CGG | 0.301077 | 1.4:+88574463 | MS.gene90098:CDS |
| TCGCCGATAAAGACTTTGTT+AGG | 0.308150 | 1.4:+88571927 | MS.gene90098:CDS |
| AGCTTATCTGTAAAATATTC+TGG | 0.310967 | 1.4:+88572350 | MS.gene90098:CDS |
| TGCAGATATTATGGTTCCTT+TGG | 0.312879 | 1.4:+88575916 | MS.gene90098:intron |
| AAAACTTCATTGCTAAGAAT+TGG | 0.314964 | 1.4:+88571879 | MS.gene90098:CDS |
| GATAAGAGAACTCAAGTGTT+TGG | 0.315709 | 1.4:-88578643 | None:intergenic |
| GGCAAGAAAGTTTGCTGCCT+TGG | 0.320902 | 1.4:+88577048 | MS.gene90098:CDS |
| CTCTTCTCGTCTCAGCATGC+TGG | 0.322424 | 1.4:-88578688 | None:intergenic |
| GTTCTTTGCATGTAATGAAA+TGG | 0.338050 | 1.4:-88575964 | None:intergenic |
| ATTCCTAACAAAGTCTTTAT+CGG | 0.340148 | 1.4:-88571930 | None:intergenic |
| AAAGGATCCACTTCATCAAT+TGG | 0.341738 | 1.4:-88578442 | None:intergenic |
| CAGTAGAATACAGGTCTTAT+AGG | 0.342847 | 1.4:+88573518 | MS.gene90098:CDS |
| GCCTTTCTTTCATTCGGATT+CGG | 0.343757 | 1.4:-88571728 | None:intergenic |
| AAACAGGCAGCGTGGGTTGC+AGG | 0.351039 | 1.4:+88574420 | MS.gene90098:intron |
| AGAAGAAAATGACGACGATA+TGG | 0.352716 | 1.4:+88577360 | MS.gene90098:CDS |
| ATGGAGCTCTTCTTGCTATT+GGG | 0.353649 | 1.4:+88573548 | MS.gene90098:CDS |
| AAGAATGCGGAGAACGAATA+AGG | 0.358824 | 1.4:-88572185 | None:intergenic |
| ACTGTCCCCATCTTCTTGAT+TGG | 0.360820 | 1.4:+88572122 | MS.gene90098:CDS |
| ATGATAATGATCAAAAGCTT+TGG | 0.361240 | 1.4:+88573157 | MS.gene90098:CDS |
| CGCTCAAGTTCAGATTTATA+GGG | 0.366117 | 1.4:-88573601 | None:intergenic |
| AAGACAATTTCAATCAGCTT+TGG | 0.366324 | 1.4:-88576211 | None:intergenic |
| CACTGGACATGTGGAACCTT+TGG | 0.368126 | 1.4:+88575481 | MS.gene90098:CDS |
| TCCAATAGGAAACGTCATTC+AGG | 0.373563 | 1.4:+88578365 | MS.gene90098:intron |
| CAACACGTCTTTCCCGAGTT+TGG | 0.382141 | 1.4:+88573634 | MS.gene90098:CDS |
| ATCAAAATGTATTCAGTGCT+TGG | 0.383720 | 1.4:+88572486 | MS.gene90098:CDS |
| CAGTGGTTCTGACAGGGAAA+TGG | 0.388816 | 1.4:+88577417 | MS.gene90098:CDS |
| CAGTCCTGTTGGCCATCTTA+GGG | 0.388883 | 1.4:+88573657 | MS.gene90098:CDS |
| GAATGGATGGATCAGGAATC+TGG | 0.390772 | 1.4:-88572309 | None:intergenic |
| GGGACAGTGGTCGGGATAAT+CGG | 0.391844 | 1.4:-88572107 | None:intergenic |
| ATTGAACGTTTGCATAGAAC+TGG | 0.394636 | 1.4:+88576289 | MS.gene90098:CDS |
| CCCCATGATTTGCGAAGATC+AGG | 0.398780 | 1.4:-88572569 | None:intergenic |
| AATTCAAATCAGACGAAGAT+AGG | 0.399839 | 1.4:+88572221 | MS.gene90098:CDS |
| TGATAATGATCAAAAGCTTT+GGG | 0.400167 | 1.4:+88573158 | MS.gene90098:CDS |
| ATAAGAGAACTCAAGTGTTT+GGG | 0.402571 | 1.4:-88578642 | None:intergenic |
| GTTAACATGCTACGCATTAT+GGG | 0.406544 | 1.4:-88575185 | None:intergenic |
| AAGGATCCACTTCATCAATT+GGG | 0.407208 | 1.4:-88578441 | None:intergenic |
| TAAAAGAGTTGGAAGATGAT+TGG | 0.409023 | 1.4:-88571786 | None:intergenic |
| CTGACTATCAACAGTGTTTG+TGG | 0.410520 | 1.4:+88575987 | MS.gene90098:CDS |
| CCGTGCCACTCTTGATCTCC+TGG | 0.410642 | 1.4:+88577134 | MS.gene90098:CDS |
| AAGATCCACATGAGTATGTT+AGG | 0.411092 | 1.4:+88573184 | MS.gene90098:CDS |
| TCAGCAGCCTTTCTTTCATT+CGG | 0.412223 | 1.4:-88571734 | None:intergenic |
| TTGCGAAGATCAGGATCAAC+AGG | 0.414630 | 1.4:-88572560 | None:intergenic |
| CTTAGCATATTGCAAAAGTT+AGG | 0.417195 | 1.4:+88576796 | MS.gene90098:CDS |
| ATCCTGATCTTCGCAAATCA+TGG | 0.418182 | 1.4:+88572567 | MS.gene90098:CDS |
| GAGACTATTGTGGACAAGTT+TGG | 0.418235 | 1.4:+88574850 | MS.gene90098:CDS |
| CACAAACACTGTTGATAGTC+AGG | 0.421066 | 1.4:-88575986 | None:intergenic |
| TGAAGACCTTGTGTTTACTT+TGG | 0.426103 | 1.4:+88574828 | MS.gene90098:CDS |
| CTTTGGACAATTATATTTCA+AGG | 0.426833 | 1.4:+88575933 | MS.gene90098:CDS |
| TGGTTAGATATTGAAGAAGT+AGG | 0.428313 | 1.4:-88572872 | None:intergenic |
| TGATCTCCTGGTTGCATACA+AGG | 0.431116 | 1.4:+88577146 | MS.gene90098:CDS |
| GCAGAGGACTGGTGGACCAC+TGG | 0.433625 | 1.4:+88576242 | MS.gene90098:CDS |
| TGGCATAGCCCAAGTGCATA+AGG | 0.439443 | 1.4:-88574886 | None:intergenic |
| GAAGATGATTGGGTGCATAT+TGG | 0.439602 | 1.4:-88571775 | None:intergenic |
| AGAACTCAAGTGTTTGGGTC+AGG | 0.439926 | 1.4:-88578637 | None:intergenic |
| TTCTTTGCATGTAATGAAAT+GGG | 0.441132 | 1.4:-88575963 | None:intergenic |
| CAACACATTGCAATGCCTTC+CGG | 0.443732 | 1.4:-88574482 | None:intergenic |
| GCATACAAGGATCAAGTTGC+AGG | 0.446246 | 1.4:+88577159 | MS.gene90098:CDS |
| TCAATGCGGACAGGTAGTTC+AGG | 0.449994 | 1.4:-88574522 | None:intergenic |
| GTTTGATCCAATCAAGAAGA+TGG | 0.450885 | 1.4:-88572129 | None:intergenic |
| GTTCTTCAAACTTATGAATG+AGG | 0.452917 | 1.4:+88574798 | MS.gene90098:CDS |
| TTCTTCAATATCTAACCAAC+AGG | 0.453303 | 1.4:+88572877 | MS.gene90098:CDS |
| CCCGAGTTTGGCAGTCCTGT+TGG | 0.454925 | 1.4:+88573646 | MS.gene90098:CDS |
| GAAGTAGTTGTTATACTTGA+AGG | 0.466310 | 1.4:+88571695 | MS.gene90098:CDS |
| CAATTGCCAGGAGAGGCTTT+AGG | 0.466553 | 1.4:+88577102 | MS.gene90098:CDS |
| GAACCTTTGGCCATTGATGA+TGG | 0.467627 | 1.4:+88575494 | MS.gene90098:CDS |
| TCTTATCAAGCTCTTGCAAA+TGG | 0.467812 | 1.4:+88578659 | MS.gene90098:CDS |
| AGTGGTTCTGACAGGGAAAT+GGG | 0.468849 | 1.4:+88577418 | MS.gene90098:CDS |
| ATTGGAGAGGCCTGTTCCCT+TGG | 0.469011 | 1.4:+88572529 | MS.gene90098:CDS |
| ATGGGAACTGATGCTGAAGA+TGG | 0.471480 | 1.4:+88577436 | MS.gene90098:CDS |
| TCCTGATCTTCGCAAATCAT+GGG | 0.471937 | 1.4:+88572568 | MS.gene90098:CDS |
| TGTCTCGTGAATAATGTGAT+AGG | 0.472814 | 1.4:-88572251 | None:intergenic |
| CACATGTCCAGTGATATTGT+TGG | 0.473110 | 1.4:-88575471 | None:intergenic |
| TCTCCTGGCAATTGATCAGC+TGG | 0.473397 | 1.4:-88577093 | None:intergenic |
| TTGAAGACTTGTATAGTCCT+AGG | 0.475338 | 1.4:+88573311 | MS.gene90098:CDS |
| CTTCCAGCTGATCAATTGCC+AGG | 0.475735 | 1.4:+88577090 | MS.gene90098:CDS |
| GGTTGACCTTCCAAGGGAAC+AGG | 0.477178 | 1.4:-88572539 | None:intergenic |
| TCATCTGAGTCCTCATCATC+GGG | 0.483411 | 1.4:-88578388 | None:intergenic |
| ACAATGATTTGTAAAAGAGT+TGG | 0.483438 | 1.4:-88571797 | None:intergenic |
| ATCAACAGGTTGACCTTCCA+AGG | 0.484157 | 1.4:-88572546 | None:intergenic |
| AGGATGACAGTGGTTCTGAC+AGG | 0.484366 | 1.4:+88577410 | MS.gene90098:CDS |
| GTTAAATATATTGAGAAGGT+GGG | 0.484925 | 1.4:-88572278 | None:intergenic |
| AAATCCACGGAGGCAGTCCT+AGG | 0.485246 | 1.4:-88573328 | None:intergenic |
| GTCATCTGAGTCCTCATCAT+CGG | 0.486522 | 1.4:-88578389 | None:intergenic |
| ATGTTTCACAAGCATTATGC+GGG | 0.488084 | 1.4:+88572774 | MS.gene90098:CDS |
| CTATAAGACCTGTATTCTAC+TGG | 0.488098 | 1.4:-88573517 | None:intergenic |
| ACTTAGAAAATTGACTGATC+AGG | 0.489306 | 1.4:+88577480 | MS.gene90098:CDS |
| TTGGCCCTAAGATGGCCAAC+AGG | 0.489970 | 1.4:-88573661 | None:intergenic |
| TGACATTCAACAGATTTAAG+TGG | 0.490324 | 1.4:-88572812 | None:intergenic |
| GCTACTTGAATGGATGGATC+AGG | 0.491104 | 1.4:-88572316 | None:intergenic |
| AGAAGATGGGGACAGTGGTC+GGG | 0.491280 | 1.4:-88572115 | None:intergenic |
| TTTCTCTCCAACAATATCAC+TGG | 0.494642 | 1.4:+88575464 | MS.gene90098:CDS |
| CAAGAGTGGCACGGAATACC+CGG | 0.497487 | 1.4:-88577125 | None:intergenic |
| TGAGATTGAGAAGGAAAAGT+CGG | 0.497844 | 1.4:+88578712 | MS.gene90098:CDS |
| ATGAAGCACCAGTAGAATAC+AGG | 0.501247 | 1.4:+88573509 | MS.gene90098:CDS |
| TGATGGAAGCACTATCAGAT+TGG | 0.503592 | 1.4:+88575511 | MS.gene90098:CDS |
| GATGGAAGCACTATCAGATT+GGG | 0.504868 | 1.4:+88575512 | MS.gene90098:CDS |
| GCCAACAGGACTGCCAAACT+CGG | 0.505683 | 1.4:-88573647 | None:intergenic |
| GGACAAGTTTGGTGAAGAAA+TGG | 0.506738 | 1.4:+88574861 | MS.gene90098:CDS |
| ACCCGGCCTAAAGCCTCTCC+TGG | 0.506757 | 1.4:-88577108 | None:intergenic |
| AAAAGAGTTGGAAGATGATT+GGG | 0.509158 | 1.4:-88571785 | None:intergenic |
| TTCGCAAATCATGGGGTTGG+TGG | 0.509717 | 1.4:+88572576 | MS.gene90098:CDS |
| GAAATGGCACCTTATGCACT+TGG | 0.509924 | 1.4:+88574877 | MS.gene90098:CDS |
| AGTAGGTTGATAACTCTGTC+AGG | 0.510634 | 1.4:-88572855 | None:intergenic |
| ACAGTCCCCAATTGATGAAG+TGG | 0.510949 | 1.4:+88578435 | MS.gene90098:CDS |
| GCCAGGAGAGGCTTTAGGCC+GGG | 0.512244 | 1.4:+88577107 | MS.gene90098:CDS |
| TTTGGACAATTATATTTCAA+GGG | 0.512445 | 1.4:+88575934 | MS.gene90098:CDS |
| AAAGGCTGCTGAACAAAGGT+TGG | 0.513295 | 1.4:+88571745 | MS.gene90098:CDS |
| CGCTGATGATTCAAGTTCAA+TGG | 0.515595 | 1.4:+88575070 | MS.gene90098:CDS |
| CTTTGCAGAAGCTGCAGAAG+AGG | 0.515709 | 1.4:+88577327 | MS.gene90098:intron |
| AAGAAGATGGGGACAGTGGT+CGG | 0.516125 | 1.4:-88572116 | None:intergenic |
| TGTTAAATATATTGAGAAGG+TGG | 0.516144 | 1.4:-88572279 | None:intergenic |
| TGCCAGGAGAGGCTTTAGGC+CGG | 0.518509 | 1.4:+88577106 | MS.gene90098:CDS |
| TCTTCTCGTCTCAGCATGCT+GGG | 0.520955 | 1.4:-88578687 | None:intergenic |
| AGATCAGCTACTTGAATGGA+TGG | 0.521067 | 1.4:-88572322 | None:intergenic |
| GTGAGTTGGTTCGAAAGCGC+AGG | 0.523922 | 1.4:+88573356 | MS.gene90098:CDS |
| TGTATACTGTGCTGCAGCCT+CGG | 0.524758 | 1.4:+88573088 | MS.gene90098:CDS |
| TCAATTGTAATTCTGAGATA+CGG | 0.526551 | 1.4:-88576271 | None:intergenic |
| CTTCCTAAACTGCAGAGGAC+TGG | 0.526734 | 1.4:+88576231 | MS.gene90098:CDS |
| TTTGATCCAATCAAGAAGAT+GGG | 0.528330 | 1.4:-88572128 | None:intergenic |
| CGCATTATGGGAAGCAAGGT+AGG | 0.531290 | 1.4:-88575173 | None:intergenic |
| GTCATTCAGGCCCGATGATG+AGG | 0.532142 | 1.4:+88578378 | MS.gene90098:CDS |
| GAGAGGCCTGTTCCCTTGGA+AGG | 0.534183 | 1.4:+88572533 | MS.gene90098:CDS |
| TCCGAATCCGAATGAAAGAA+AGG | 0.536209 | 1.4:+88571727 | MS.gene90098:CDS |
| ACCGTACCTTGGCCCTAAGA+TGG | 0.536280 | 1.4:-88573669 | None:intergenic |
| CTGTTGAATGTCATTCGAGC+AGG | 0.539977 | 1.4:+88572822 | MS.gene90098:CDS |
| GAAATGTCTTCTCATTCAAG+TGG | 0.539995 | 1.4:+88576324 | MS.gene90098:CDS |
| TGTTGGCCATCTTAGGGCCA+AGG | 0.540483 | 1.4:+88573663 | MS.gene90098:CDS |
| AGCTGATCAATTGCCAGGAG+AGG | 0.544550 | 1.4:+88577095 | MS.gene90098:CDS |
| ATCTTCGCAAATCATGGGGT+TGG | 0.544792 | 1.4:+88572573 | MS.gene90098:CDS |
| GATAGTGCTTCCATCATCAA+TGG | 0.545002 | 1.4:-88575504 | None:intergenic |
| CAGAGGACTGGTGGACCACT+GGG | 0.550023 | 1.4:+88576243 | MS.gene90098:CDS |
| TGGGAACTGATGCTGAAGAT+GGG | 0.553757 | 1.4:+88577437 | MS.gene90098:CDS |
| CAACAATATCACTGGACATG+TGG | 0.554151 | 1.4:+88575472 | MS.gene90098:CDS |
| TCGTGAATAATGTGATAGGC+AGG | 0.555259 | 1.4:-88572247 | None:intergenic |
| AGGTCTTATAGGCAGAAAGA+TGG | 0.556191 | 1.4:+88573529 | MS.gene90098:CDS |
| CTCAAAAGAGAAGGAAGTTG+AGG | 0.557170 | 1.4:-88571971 | None:intergenic |
| GTTTACTTTGGAGACTATTG+TGG | 0.557940 | 1.4:+88574840 | MS.gene90098:CDS |
| GATGAGATCAGCTACTTGAA+TGG | 0.559770 | 1.4:-88572326 | None:intergenic |
| TGCAGAAGCTGCAGAAGAGG+AGG | 0.562224 | 1.4:+88577330 | MS.gene90098:intron |
| CACGTACCATCAAGGAGCGA+AGG | 0.566318 | 1.4:-88574703 | None:intergenic |
| GCTGCGAAACCCTGAAAACA+AGG | 0.567003 | 1.4:+88572740 | MS.gene90098:CDS |
| GGTTATACGTACATATATAG+AGG | 0.568759 | 1.4:-88572374 | None:intergenic |
| GAGTATGTTAGGAAAGGCTA+TGG | 0.572371 | 1.4:+88573195 | MS.gene90098:CDS |
| ATCAGCTGGAAGTGCCAGCA+AGG | 0.574149 | 1.4:-88577079 | None:intergenic |
| CAGCATGCTGAGACGAGAAG+AGG | 0.576433 | 1.4:+88578689 | MS.gene90098:CDS |
| GAATGGCGGCAACTTGTCTG+AGG | 0.576913 | 1.4:-88571850 | None:intergenic |
| TTAAATATATTGAGAAGGTG+GGG | 0.581029 | 1.4:-88572277 | None:intergenic |
| CCTAAACTGCAGAGGACTGG+TGG | 0.581251 | 1.4:+88576234 | MS.gene90098:CDS |
| GAGAAGAGGTGAGATTGAGA+AGG | 0.581346 | 1.4:+88578703 | MS.gene90098:CDS |
| TTGAATGTCATTCGAGCAGG+TGG | 0.583758 | 1.4:+88572825 | MS.gene90098:CDS |
| TAAGGGAATACCTTGACCAT+CGG | 0.584319 | 1.4:-88575210 | None:intergenic |
| ATAGCATACCTCAAAAGAGA+AGG | 0.586840 | 1.4:-88571980 | None:intergenic |
| TTGGACAATTATATTTCAAG+GGG | 0.589802 | 1.4:+88575935 | MS.gene90098:CDS |
| CCACATGAGTATGTTAGGAA+AGG | 0.589934 | 1.4:+88573189 | MS.gene90098:CDS |
| AAAACAGAATCAATGCGGAC+AGG | 0.593718 | 1.4:-88574531 | None:intergenic |
| TATCATTGAAGCACATGAGA+GGG | 0.594402 | 1.4:-88573140 | None:intergenic |
| AATGTTTCACAAGCATTATG+CGG | 0.595466 | 1.4:+88572773 | MS.gene90098:CDS |
| TCCAAAAGCTTAAGAATCTG+TGG | 0.596418 | 1.4:-88578750 | None:intergenic |
| AAAGAAAGGCTGCTGAACAA+AGG | 0.597576 | 1.4:+88571741 | MS.gene90098:CDS |
| TCAAGTTCAATGGCTGCAGT+TGG | 0.600507 | 1.4:+88575080 | MS.gene90098:CDS |
| CCAACAGGACTGCCAAACTC+GGG | 0.601191 | 1.4:-88573646 | None:intergenic |
| AGGATCCACTTCATCAATTG+GGG | 0.601464 | 1.4:-88578440 | None:intergenic |
| CATATTTAATAGAAAGAATG+CGG | 0.602450 | 1.4:-88572198 | None:intergenic |
| ATGTTAACAACCGATGGTCA+AGG | 0.603700 | 1.4:+88575200 | MS.gene90098:CDS |
| CTTGATCCTTGTATGCAACC+AGG | 0.604622 | 1.4:-88577152 | None:intergenic |
| GTGTGTTAAATATATTGAGA+AGG | 0.607757 | 1.4:-88572282 | None:intergenic |
| TCTGATCTGAGAAGCTAATG+TGG | 0.613687 | 1.4:-88574452 | None:intergenic |
| AATATCAGAGACAGAATCGT+CGG | 0.616544 | 1.4:-88571825 | None:intergenic |
| GGATGACAGTGGTTCTGACA+GGG | 0.618263 | 1.4:+88577411 | MS.gene90098:CDS |
| TTCTAAACAGACTCTACACT+CGG | 0.620641 | 1.4:+88572624 | MS.gene90098:CDS |
| GCTACGCATTATGGGAAGCA+AGG | 0.622515 | 1.4:-88575177 | None:intergenic |
| TGAGTTGGTTCGAAAGCGCA+GGG | 0.626418 | 1.4:+88573357 | MS.gene90098:CDS |
| TAGTCCTAGGACTGCCTCCG+TGG | 0.626651 | 1.4:+88573324 | MS.gene90098:CDS |
| AAATGGCACCTTATGCACTT+GGG | 0.628408 | 1.4:+88574878 | MS.gene90098:CDS |
| CGTAGCATGTTAACAACCGA+TGG | 0.630518 | 1.4:+88575194 | MS.gene90098:CDS |
| CTTGAAATATAATTGTCCAA+AGG | 0.630964 | 1.4:-88575932 | None:intergenic |
| AATGGCGGCAACTTGTCTGA+GGG | 0.630984 | 1.4:-88571849 | None:intergenic |
| CAACTCACTCATAAAATCCA+CGG | 0.633012 | 1.4:-88573341 | None:intergenic |
| AAAAGAAGAACGTCAAGCCG+AGG | 0.634422 | 1.4:-88573105 | None:intergenic |
| CTGCAAGAAGTCAAGAAGAG+TGG | 0.634459 | 1.4:+88576856 | MS.gene90098:CDS |
| TTATCATTGAAGCACATGAG+AGG | 0.634688 | 1.4:-88573141 | None:intergenic |
| ATTGTCTTCCTAAACTGCAG+AGG | 0.634847 | 1.4:+88576226 | MS.gene90098:CDS |
| CTTCCATCATCAATGGCCAA+AGG | 0.636876 | 1.4:-88575497 | None:intergenic |
| GAAAGAGATTGAGTGAGCAG+TGG | 0.640985 | 1.4:-88571906 | None:intergenic |
| AAATGTATTCAGTGCTTGGA+TGG | 0.641307 | 1.4:+88572490 | MS.gene90098:CDS |
| ACGTACCATCAAGGAGCGAA+GGG | 0.642973 | 1.4:-88574702 | None:intergenic |
| CCTGATCTTCGCAAATCATG+GGG | 0.645502 | 1.4:+88572569 | MS.gene90098:CDS |
| CCTTTCCTAACATACTCATG+TGG | 0.647215 | 1.4:-88573189 | None:intergenic |
| TCAAACTGATGATGAAGATG+AGG | 0.647870 | 1.4:+88577390 | MS.gene90098:CDS |
| CTGATCTGAGAAGCTAATGT+GGG | 0.648144 | 1.4:-88574451 | None:intergenic |
| TTGATCCAATCAAGAAGATG+GGG | 0.650413 | 1.4:-88572127 | None:intergenic |
| CCAGGAGATCAAGAGTGGCA+CGG | 0.650577 | 1.4:-88577134 | None:intergenic |
| TGCAACCAGGAGATCAAGAG+TGG | 0.652472 | 1.4:-88577139 | None:intergenic |
| TGCAATCATCAGATCCAATG+AGG | 0.656544 | 1.4:+88578606 | MS.gene90098:CDS |
| AATCAAGAAGATGGGGACAG+TGG | 0.659255 | 1.4:-88572120 | None:intergenic |
| GCATTGCAATGTGTTGTCTG+TGG | 0.661281 | 1.4:+88574489 | MS.gene90098:CDS |
| GAAAATGACGACGATATGGA+CGG | 0.663838 | 1.4:+88577364 | MS.gene90098:CDS |
| AGATCAGAACAATTTCCGGA+AGG | 0.668438 | 1.4:+88574467 | MS.gene90098:CDS |
| GGGAACTGATGCTGAAGATG+GGG | 0.669290 | 1.4:+88577438 | MS.gene90098:CDS |
| TAGTCTCCAAAGTAAACACA+AGG | 0.681795 | 1.4:-88574834 | None:intergenic |
| TCAACAGGTTGACCTTCCAA+GGG | 0.688690 | 1.4:-88572545 | None:intergenic |
| CAATATGCTAAGAGTCAATG+TGG | 0.695584 | 1.4:-88576785 | None:intergenic |
| TGTTTCACAAGCATTATGCG+GGG | 0.696183 | 1.4:+88572775 | MS.gene90098:CDS |
| TGAGATACGGCTCAACCCAG+TGG | 0.705549 | 1.4:-88576258 | None:intergenic |
| CCAGCAAGGATGTTAAACCA+AGG | 0.712970 | 1.4:-88577065 | None:intergenic |
| GATGAAGATGAGGATGACAG+TGG | 0.770603 | 1.4:+88577400 | MS.gene90098:CDS |
| CTCACTCATAAAATCCACGG+AGG | 0.783942 | 1.4:-88573338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88571689 | 88578763 | 88571689 | ID=MS.gene90098 |
| chr1.4 | mRNA | 88571689 | 88578763 | 88571689 | ID=MS.gene90098.t1;Parent=MS.gene90098 |
| chr1.4 | exon | 88571689 | 88571993 | 88571689 | ID=MS.gene90098.t1.exon1;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88571689 | 88571993 | 88571689 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88572069 | 88572384 | 88572069 | ID=MS.gene90098.t1.exon2;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88572069 | 88572384 | 88572069 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88572461 | 88572645 | 88572461 | ID=MS.gene90098.t1.exon3;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88572461 | 88572645 | 88572461 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88572725 | 88572898 | 88572725 | ID=MS.gene90098.t1.exon4;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88572725 | 88572898 | 88572725 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88573071 | 88573216 | 88573071 | ID=MS.gene90098.t1.exon5;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88573071 | 88573216 | 88573071 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88573305 | 88573428 | 88573305 | ID=MS.gene90098.t1.exon6;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88573305 | 88573428 | 88573305 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88573504 | 88573684 | 88573504 | ID=MS.gene90098.t1.exon7;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88573504 | 88573684 | 88573504 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88574426 | 88574585 | 88574426 | ID=MS.gene90098.t1.exon8;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88574426 | 88574585 | 88574426 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88574677 | 88574718 | 88574677 | ID=MS.gene90098.t1.exon9;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88574677 | 88574718 | 88574677 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88574797 | 88574915 | 88574797 | ID=MS.gene90098.t1.exon10;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88574797 | 88574915 | 88574797 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88575023 | 88575221 | 88575023 | ID=MS.gene90098.t1.exon11;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88575023 | 88575221 | 88575023 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88575421 | 88575552 | 88575421 | ID=MS.gene90098.t1.exon12;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88575421 | 88575552 | 88575421 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88575921 | 88576024 | 88575921 | ID=MS.gene90098.t1.exon13;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88575921 | 88576024 | 88575921 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88576166 | 88576345 | 88576166 | ID=MS.gene90098.t1.exon14;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88576166 | 88576345 | 88576166 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88576760 | 88576899 | 88576760 | ID=MS.gene90098.t1.exon15;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88576760 | 88576899 | 88576760 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88577041 | 88577180 | 88577041 | ID=MS.gene90098.t1.exon16;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88577041 | 88577180 | 88577041 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88577335 | 88577501 | 88577335 | ID=MS.gene90098.t1.exon17;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88577335 | 88577501 | 88577335 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88578373 | 88578490 | 88578373 | ID=MS.gene90098.t1.exon18;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88578373 | 88578490 | 88578373 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| chr1.4 | exon | 88578603 | 88578763 | 88578603 | ID=MS.gene90098.t1.exon19;Parent=MS.gene90098.t1 |
| chr1.4 | CDS | 88578603 | 88578763 | 88578603 | ID=cds.MS.gene90098.t1;Parent=MS.gene90098.t1 |
| Gene Sequence |
| Protein sequence |
