Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90279.t1 | XP_003627434.1 | 97.9 | 769 | 15 | 1 | 1 | 768 | 1 | 769 | 0.00E+00 | 1501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90279.t1 | Q6NQ79 | 60.6 | 762 | 271 | 10 | 4 | 757 | 2 | 742 | 3.3e-266 | 919.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90279.t1 | G7L956 | 97.9 | 769 | 15 | 1 | 1 | 768 | 1 | 769 | 0.0e+00 | 1501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90279.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051033 | MS.gene90279 | 0.889248 | 2.87E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90279.t1 | MTR_8g022980 | 97.919 | 769 | 15 | 1 | 1 | 768 | 1 | 769 | 0.0 | 1561 |
| MS.gene90279.t1 | MTR_8g022980 | 97.816 | 641 | 13 | 1 | 129 | 768 | 1 | 641 | 0.0 | 1305 |
| MS.gene90279.t1 | MTR_8g022980 | 98.252 | 572 | 9 | 1 | 198 | 768 | 1 | 572 | 0.0 | 1163 |
| MS.gene90279.t1 | MTR_2g044550 | 61.578 | 773 | 266 | 11 | 2 | 758 | 1 | 758 | 0.0 | 951 |
| MS.gene90279.t1 | MTR_8g038730 | 96.257 | 187 | 7 | 0 | 1 | 187 | 1 | 187 | 3.37e-126 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90279.t1 | AT3G43240 | 61.286 | 762 | 266 | 10 | 4 | 757 | 2 | 742 | 0.0 | 932 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAGTAAACAAAATT+TGG | 0.119113 | 8.2:+72893132 | None:intergenic |
| GCAGGGTCTTGGCGCATTTA+AGG | 0.202754 | 8.2:-72885849 | MS.gene90279:intron |
| TTCCCTGAGTTGGTTTCTTC+GGG | 0.216916 | 8.2:-72894295 | MS.gene90279:CDS |
| GCTTCCTCAATGGGCTTTGC+AGG | 0.239030 | 8.2:-72889134 | MS.gene90279:intron |
| CTCTGCCTAGCTGGAGTTAA+TGG | 0.257092 | 8.2:+72888000 | None:intergenic |
| CTTTCAAGGGGAGCAGTTAC+TGG | 0.263650 | 8.2:-72893118 | MS.gene90279:CDS |
| AGTGGACCTTCTGGTGTAAA+TGG | 0.273095 | 8.2:-72887916 | MS.gene90279:CDS |
| CTGCAAAACTTTCTCCATTT+GGG | 0.274228 | 8.2:+72892520 | None:intergenic |
| GAATCCCATATGTTGTGTTT+TGG | 0.280927 | 8.2:-72892322 | MS.gene90279:CDS |
| TGAGTCATTGCTGAGATCTT+TGG | 0.295961 | 8.2:-72890350 | MS.gene90279:CDS |
| TTTCCCTGAGTTGGTTTCTT+CGG | 0.299281 | 8.2:-72894296 | MS.gene90279:CDS |
| AAGAGCTCTGATATCTCTTC+AGG | 0.306181 | 8.2:+72893048 | None:intergenic |
| TGCAGAGGCCCTTCATCTTA+AGG | 0.306525 | 8.2:-72892502 | MS.gene90279:intron |
| GAGCTAATTCATATTCTAAA+AGG | 0.310868 | 8.2:+72886203 | None:intergenic |
| TCTGCAAAACTTTCTCCATT+TGG | 0.312545 | 8.2:+72892519 | None:intergenic |
| CAATGATGCTGATAGCGATA+TGG | 0.314916 | 8.2:-72890836 | MS.gene90279:CDS |
| TGCCCCTCCACCACCGCTTC+AGG | 0.318880 | 8.2:-72889829 | MS.gene90279:CDS |
| CACTAAAAGGTGTCATTCTA+TGG | 0.325620 | 8.2:+72887935 | None:intergenic |
| GATTCACACCTCTTTCTTGT+AGG | 0.334905 | 8.2:+72888099 | None:intergenic |
| ACACCAGAAGGTCCACTAAA+AGG | 0.337433 | 8.2:+72887922 | None:intergenic |
| CCATGTTTCTTCAACGGTAA+TGG | 0.343971 | 8.2:+72887760 | None:intergenic |
| TCTTCATCATTGTGGATGTC+AGG | 0.348427 | 8.2:+72888060 | None:intergenic |
| AGGAAGTTGGTTCACTGGTT+TGG | 0.360399 | 8.2:-72893092 | MS.gene90279:CDS |
| CATATCTCACTTCTAGTATC+TGG | 0.366260 | 8.2:-72889744 | MS.gene90279:CDS |
| CCTTCTGGTGTAAATGGCTT+TGG | 0.390245 | 8.2:-72887910 | MS.gene90279:CDS |
| CTTGGCATTGCTAGTATTCA+AGG | 0.391786 | 8.2:-72888255 | MS.gene90279:CDS |
| TTGTTCGACAGTAGTGCTGC+TGG | 0.395064 | 8.2:-72885929 | MS.gene90279:intron |
| GAACTCGGCAAGCCCACCTT+GGG | 0.404076 | 8.2:+72886737 | None:intergenic |
| ACAGTAGTGCTGCTGGGGAT+TGG | 0.405607 | 8.2:-72885922 | MS.gene90279:intron |
| TCATCATGTATCTGAATAGA+AGG | 0.407728 | 8.2:+72890721 | None:intergenic |
| TCATGGAGTTTCTGATTCTC+CGG | 0.410638 | 8.2:-72886779 | MS.gene90279:CDS |
| TGGCGTCGAACATGAGGAAT+TGG | 0.411641 | 8.2:+72887955 | None:intergenic |
| AAAATAATGCGTGACGGAAA+TGG | 0.412532 | 8.2:+72892270 | None:intergenic |
| CAAGTATCCTTTCCCTGAGT+TGG | 0.416051 | 8.2:-72894305 | MS.gene90279:CDS |
| TTTCCATTCAGAATCGCATC+AGG | 0.417676 | 8.2:+72886714 | None:intergenic |
| CAGTAGTGCTGCTGGGGATT+GGG | 0.419128 | 8.2:-72885921 | MS.gene90279:CDS |
| TATCAAAGCTCTGATAAAGA+TGG | 0.426674 | 8.2:-72888180 | MS.gene90279:CDS |
| CACCTCTTTCTTGTAGGAGG+GGG | 0.429083 | 8.2:+72888105 | None:intergenic |
| ACGTTGGCAATGGCATCAAC+TGG | 0.431163 | 8.2:-72886553 | MS.gene90279:CDS |
| TAGCATGAAGCTTCCTCAAT+GGG | 0.431181 | 8.2:-72889143 | MS.gene90279:CDS |
| CCAATACTACTACGCTTCAC+AGG | 0.433287 | 8.2:+72887853 | None:intergenic |
| AACTCTTTGCAATCCGGAAA+AGG | 0.434884 | 8.2:-72893187 | MS.gene90279:CDS |
| GCTGCCTGAAGCGGTGGTGG+AGG | 0.438692 | 8.2:+72889825 | None:intergenic |
| GGTTCAAACTCTTTGCAATC+CGG | 0.439687 | 8.2:-72893193 | MS.gene90279:CDS |
| AATGATGCTGATAGCGATAT+GGG | 0.440722 | 8.2:-72890835 | MS.gene90279:CDS |
| TATATAAGTTGTAGAGATCA+AGG | 0.442313 | 8.2:+72886688 | None:intergenic |
| TCATCTTCTTCATCCATCTC+TGG | 0.448210 | 8.2:+72890772 | None:intergenic |
| TGTGACAGAAGGCAGGGTCT+TGG | 0.452278 | 8.2:-72885860 | MS.gene90279:CDS |
| GGATGTCAGGGCTAGCCCCT+TGG | 0.453940 | 8.2:+72888073 | None:intergenic |
| ACCTCAGAGCAAGTCTGTAC+CGG | 0.455288 | 8.2:+72887724 | None:intergenic |
| CCACAATGATGAAGAGGAAA+AGG | 0.457336 | 8.2:-72888052 | MS.gene90279:CDS |
| ACCAAAATACCTTAAGATGA+AGG | 0.457949 | 8.2:+72892493 | None:intergenic |
| CATGGAGTTTCTGATTCTCC+GGG | 0.458678 | 8.2:-72886778 | MS.gene90279:CDS |
| AATGCTGCTTGCTGTGTCAC+AGG | 0.459679 | 8.2:-72886162 | MS.gene90279:intron |
| GGGGAGGCTTCAACCAAATG+GGG | 0.466408 | 8.2:+72888124 | None:intergenic |
| AGGATAGGACAATGGTGAAT+GGG | 0.468465 | 8.2:-72888032 | MS.gene90279:CDS |
| TCACACCTCTTTCTTGTAGG+AGG | 0.470346 | 8.2:+72888102 | None:intergenic |
| CCTGTGAAGCGTAGTAGTAT+TGG | 0.471268 | 8.2:-72887853 | MS.gene90279:CDS |
| TTCAATGAAATAACCTGCTT+AGG | 0.475210 | 8.2:+72887784 | None:intergenic |
| GGATGAGGAAGTTGGTTCAC+TGG | 0.477657 | 8.2:-72893097 | MS.gene90279:CDS |
| AGGTACCTGATCATTAAAAC+AGG | 0.479430 | 8.2:+72889710 | None:intergenic |
| TTCCCTGATGCGATTCTGAA+TGG | 0.485302 | 8.2:-72886717 | MS.gene90279:CDS |
| CTCTGATATCTCTTCAGGGT+TGG | 0.486126 | 8.2:+72893053 | None:intergenic |
| AAGCTCATCTCAGCCTAAGC+AGG | 0.489092 | 8.2:-72887797 | MS.gene90279:CDS |
| GGGAGGCTTCAACCAAATGG+GGG | 0.489152 | 8.2:+72888125 | None:intergenic |
| ATGTTTCTTCTACAGGGAGT+TGG | 0.489899 | 8.2:-72886256 | MS.gene90279:intron |
| CTGCCTGAAGCGGTGGTGGA+GGG | 0.490738 | 8.2:+72889826 | None:intergenic |
| AAGGATAGGACAATGGTGAA+TGG | 0.491742 | 8.2:-72888033 | MS.gene90279:CDS |
| TGTTCGACAGTAGTGCTGCT+GGG | 0.492752 | 8.2:-72885928 | MS.gene90279:intron |
| TCTGGTGTAAATGGCTTTGG+TGG | 0.494892 | 8.2:-72887907 | MS.gene90279:CDS |
| AACACAGTAAAGCTTGAAAG+AGG | 0.495127 | 8.2:+72890888 | None:intergenic |
| GGAACTCGGCAAGCCCACCT+TGG | 0.495235 | 8.2:+72886736 | None:intergenic |
| GCAAGCTCCATGGCAAGTAT+AGG | 0.496463 | 8.2:-72889993 | MS.gene90279:intron |
| CAGTTACTGGATGAGGAAGT+TGG | 0.497802 | 8.2:-72893105 | MS.gene90279:CDS |
| GATAAAGATGGATGTGATAA+CGG | 0.502582 | 8.2:-72888168 | MS.gene90279:CDS |
| GGAGGCTTCAACCAAATGGG+GGG | 0.505795 | 8.2:+72888126 | None:intergenic |
| GGAATTTATTAAAGATGTCA+TGG | 0.506761 | 8.2:-72886796 | MS.gene90279:CDS |
| GAAGCTGCCTGAAGCGGTGG+TGG | 0.510387 | 8.2:+72889822 | None:intergenic |
| CACACCTCTTTCTTGTAGGA+GGG | 0.510592 | 8.2:+72888103 | None:intergenic |
| TTAGCATGAAGCTTCCTCAA+TGG | 0.514746 | 8.2:-72889144 | MS.gene90279:CDS |
| TTCACTGGTTTGGCAAGGTG+TGG | 0.516514 | 8.2:-72893082 | MS.gene90279:CDS |
| CTTCGGTTGTGACAGAAGGC+AGG | 0.517549 | 8.2:-72885867 | MS.gene90279:CDS |
| GCTGGGGATTGGGTGAATTG+TGG | 0.518001 | 8.2:-72885911 | MS.gene90279:CDS |
| TTGCTGAGATCTTTGGAGGA+TGG | 0.521508 | 8.2:-72890343 | MS.gene90279:CDS |
| AGGGGAGCAGTTACTGGATG+AGG | 0.522856 | 8.2:-72893112 | MS.gene90279:CDS |
| CCTTCTGTCACAACCGAAGT+GGG | 0.523965 | 8.2:+72885871 | None:intergenic |
| CCCACTTCGGTTGTGACAGA+AGG | 0.524082 | 8.2:-72885871 | MS.gene90279:CDS |
| GTTGGTTCACTGGTTTGGCA+AGG | 0.524333 | 8.2:-72893087 | MS.gene90279:CDS |
| CAGAATCGCATCAGGGAACT+CGG | 0.525188 | 8.2:+72886722 | None:intergenic |
| TGCCTGAAGCGGTGGTGGAG+GGG | 0.526869 | 8.2:+72889827 | None:intergenic |
| TGGGTGAATTGTGGCATATG+TGG | 0.528030 | 8.2:-72885902 | MS.gene90279:CDS |
| GAATCAGTCGGCTATGCCCC+CGG | 0.528908 | 8.2:+72886760 | None:intergenic |
| GATGATGAAGAAAGTTCCTC+AGG | 0.530128 | 8.2:-72890751 | MS.gene90279:CDS |
| CTTCATCATTGTGGATGTCA+GGG | 0.531068 | 8.2:+72888061 | None:intergenic |
| GCAGGCAGCATATTGAGAAA+AGG | 0.532018 | 8.2:+72892292 | None:intergenic |
| AGCTTTGATAAAAGAAAAGC+AGG | 0.532122 | 8.2:+72888193 | None:intergenic |
| GTTTACTTAGAAATCCCAAA+TGG | 0.532260 | 8.2:-72892534 | MS.gene90279:CDS |
| TCTTTCTCAAAAGAAGCTAC+AGG | 0.532796 | 8.2:+72888228 | None:intergenic |
| CAATGTTGACCCTCCAGAGA+TGG | 0.533538 | 8.2:-72890785 | MS.gene90279:CDS |
| CCAAAATACCTTAAGATGAA+GGG | 0.533560 | 8.2:+72892494 | None:intergenic |
| AAACTTCGATAAGAAACATC+AGG | 0.533627 | 8.2:+72888285 | None:intergenic |
| GCCTTCTGTCACAACCGAAG+TGG | 0.533864 | 8.2:+72885870 | None:intergenic |
| CTTTGGTGGTGCCCATGTTG+AGG | 0.535826 | 8.2:-72887893 | MS.gene90279:CDS |
| TCTCTACAACTTATATAAAG+AGG | 0.539055 | 8.2:-72886682 | MS.gene90279:intron |
| GGAGGATTTCACGTTGGCAA+TGG | 0.539913 | 8.2:-72886563 | MS.gene90279:CDS |
| CGCCCCGAAGAAACCAACTC+AGG | 0.541385 | 8.2:+72894292 | None:intergenic |
| TATCGAAGTTTAGTTGCACT+TGG | 0.543468 | 8.2:-72888273 | MS.gene90279:CDS |
| TCTTAGGTGGTTACAAGGGG+AGG | 0.545591 | 8.2:-72886581 | MS.gene90279:intron |
| TCTTCTTCATCCATCTCTGG+AGG | 0.551868 | 8.2:+72890775 | None:intergenic |
| TGAGATATGTGCAGAACTGC+AGG | 0.552300 | 8.2:+72889758 | None:intergenic |
| GTTGCAAATGGGTATTCTCA+AGG | 0.557448 | 8.2:-72885639 | MS.gene90279:CDS |
| ACACCTCTTTCTTGTAGGAG+GGG | 0.558864 | 8.2:+72888104 | None:intergenic |
| CCATTACCGTTGAAGAAACA+TGG | 0.561425 | 8.2:-72887760 | MS.gene90279:CDS |
| GTCATTGCTGAGATCTTTGG+AGG | 0.563395 | 8.2:-72890347 | MS.gene90279:CDS |
| CAACATACCTATACTTGCCA+TGG | 0.567611 | 8.2:+72889986 | None:intergenic |
| TGGCAATGGCATCAACTGGA+AGG | 0.569612 | 8.2:-72886549 | MS.gene90279:CDS |
| CTACAGCCATGTTTCTTCAA+CGG | 0.569703 | 8.2:+72887754 | None:intergenic |
| AACTTGAGATTTCTCATCTG+TGG | 0.569846 | 8.2:-72890691 | MS.gene90279:CDS |
| GGTTTCTTCGGGGCGTCTCG+AGG | 0.575757 | 8.2:-72894284 | MS.gene90279:intron |
| AGCGATATGGGGCCACACCT+TGG | 0.576539 | 8.2:-72890823 | MS.gene90279:CDS |
| TAATGCGTGACGGAAATGGC+AGG | 0.576765 | 8.2:+72892274 | None:intergenic |
| ACATGGCTGTAGCAGAGGCC+CGG | 0.576956 | 8.2:-72887743 | MS.gene90279:CDS |
| TGACATCCACAATGATGAAG+AGG | 0.577598 | 8.2:-72888058 | MS.gene90279:CDS |
| TTGGCATTGCTAGTATTCAA+GGG | 0.579438 | 8.2:-72888254 | MS.gene90279:CDS |
| AGAGCTCTGATATCTCTTCA+GGG | 0.580730 | 8.2:+72893049 | None:intergenic |
| CCTCAGAGCAAGTCTGTACC+GGG | 0.582355 | 8.2:+72887725 | None:intergenic |
| AAGAAACATGGCTGTAGCAG+AGG | 0.582907 | 8.2:-72887748 | MS.gene90279:CDS |
| TTCAACAGAACGTGTTTCAG+AGG | 0.582910 | 8.2:+72894351 | None:intergenic |
| GAAGAAACCAACTCAGGGAA+AGG | 0.585243 | 8.2:+72894298 | None:intergenic |
| GCCGACTGATTCCCCAAGGT+GGG | 0.585564 | 8.2:-72886749 | MS.gene90279:CDS |
| TTGTGGCATATGTGGTGAGT+GGG | 0.586975 | 8.2:-72885894 | MS.gene90279:CDS |
| GTTCGACAGTAGTGCTGCTG+GGG | 0.589071 | 8.2:-72885927 | MS.gene90279:intron |
| CTTCTTCATCCATCTCTGGA+GGG | 0.590584 | 8.2:+72890776 | None:intergenic |
| ATTCTATGGCGTCGAACATG+AGG | 0.590589 | 8.2:+72887949 | None:intergenic |
| ATGATGAAGAGGAAAAGGAT+AGG | 0.591727 | 8.2:-72888047 | MS.gene90279:CDS |
| CCAAAGCCATTTACACCAGA+AGG | 0.591921 | 8.2:+72887910 | None:intergenic |
| TTCGGTTGTGACAGAAGGCA+GGG | 0.596812 | 8.2:-72885866 | MS.gene90279:CDS |
| GTGGCACATAAGCCTCAACA+TGG | 0.597135 | 8.2:+72887881 | None:intergenic |
| ACATACAGCCGTCGGTAATG+TGG | 0.597154 | 8.2:+72893020 | None:intergenic |
| CTACGCTTCACAGGGACAAG+TGG | 0.597593 | 8.2:+72887862 | None:intergenic |
| ATGCGTAGTTGCAAGCTCCA+TGG | 0.599062 | 8.2:-72890003 | MS.gene90279:CDS |
| AAAGAAGCTGCCTGAAGCGG+TGG | 0.599822 | 8.2:+72889819 | None:intergenic |
| ATGTTGCAGTTTCAGCCACA+AGG | 0.599844 | 8.2:-72894409 | MS.gene90279:CDS |
| TAATTCATATTCTAAAAGGT+AGG | 0.599846 | 8.2:+72886207 | None:intergenic |
| GGCAATGGCATCAACTGGAA+GGG | 0.600155 | 8.2:-72886548 | MS.gene90279:CDS |
| CAGAAGCTTACAACAGTGGA+AGG | 0.600470 | 8.2:+72890664 | None:intergenic |
| TCCCTGAGTTGGTTTCTTCG+GGG | 0.603052 | 8.2:-72894294 | MS.gene90279:CDS |
| AGATCTGCTTCAATAGCTTG+TGG | 0.605138 | 8.2:-72889184 | MS.gene90279:CDS |
| AAAACCTGCAAAGCCCATTG+AGG | 0.606920 | 8.2:+72889130 | None:intergenic |
| CAATACTACTACGCTTCACA+GGG | 0.609711 | 8.2:+72887854 | None:intergenic |
| AGAGGTGTGAATCAAGCCAA+GGG | 0.613158 | 8.2:-72888089 | MS.gene90279:CDS |
| TTCCATTCAGAATCGCATCA+GGG | 0.613778 | 8.2:+72886715 | None:intergenic |
| GGTTGATATATCACATCGCA+TGG | 0.613948 | 8.2:+72889779 | None:intergenic |
| TTGCAAATGGGTATTCTCAA+GGG | 0.613998 | 8.2:-72885638 | MS.gene90279:CDS |
| GTCTGTTTAGAAGCTCCTTG+TGG | 0.615021 | 8.2:+72894394 | None:intergenic |
| TGATCATTAAAACAGGCTTG+TGG | 0.616696 | 8.2:+72889717 | None:intergenic |
| GCCCCGAAGAAACCAACTCA+GGG | 0.619432 | 8.2:+72894293 | None:intergenic |
| ATAGTTTGTGCACAGCTCAA+CGG | 0.621033 | 8.2:-72889241 | MS.gene90279:CDS |
| AAGAGGTGTGAATCAAGCCA+AGG | 0.621579 | 8.2:-72888090 | MS.gene90279:CDS |
| AGCCGACTGATTCCCCAAGG+TGG | 0.622396 | 8.2:-72886750 | MS.gene90279:CDS |
| TTGAGACACTCACCAAGGTG+TGG | 0.624196 | 8.2:+72890811 | None:intergenic |
| TGAATTAGCTCATGATGATG+TGG | 0.628032 | 8.2:-72886191 | MS.gene90279:CDS |
| GCCCACCTTGGGGAATCAGT+CGG | 0.628960 | 8.2:+72886748 | None:intergenic |
| TTAGCTCATGATGATGTGGA+TGG | 0.631481 | 8.2:-72886187 | MS.gene90279:CDS |
| ATTGTGGCATATGTGGTGAG+TGG | 0.631500 | 8.2:-72885895 | MS.gene90279:CDS |
| ACAAGGGGAGGATTTCACGT+TGG | 0.631639 | 8.2:-72886569 | MS.gene90279:CDS |
| TCAGCATCATTGCTATCAGT+AGG | 0.634321 | 8.2:+72890847 | None:intergenic |
| GCAGTTCATCTACACACACA+TGG | 0.635510 | 8.2:-72890933 | MS.gene90279:intron |
| AGAGGAAAAGGATAGGACAA+TGG | 0.635674 | 8.2:-72888040 | MS.gene90279:CDS |
| GCTTGAAAGAGGCACGTGCA+AGG | 0.637439 | 8.2:+72890899 | None:intergenic |
| TTCAGAATACATACAGCCGT+CGG | 0.639840 | 8.2:+72893012 | None:intergenic |
| ATGGAGTTTCTGATTCTCCG+GGG | 0.643557 | 8.2:-72886777 | MS.gene90279:CDS |
| TGGAGTTTCTGATTCTCCGG+GGG | 0.651219 | 8.2:-72886776 | MS.gene90279:CDS |
| CCACTGAAAATAATGCGTGA+CGG | 0.651651 | 8.2:+72892264 | None:intergenic |
| GCACACCATTAACTCCAGCT+AGG | 0.652707 | 8.2:-72888005 | MS.gene90279:CDS |
| GATTAAAAGTATCAGCAATG+AGG | 0.652782 | 8.2:-72887978 | MS.gene90279:CDS |
| CCCGGTACAGACTTGCTCTG+AGG | 0.653574 | 8.2:-72887725 | MS.gene90279:intron |
| TGTGGTGAGTGGGCCCACTT+CGG | 0.654753 | 8.2:-72885884 | MS.gene90279:CDS |
| CATAGCCGACTGATTCCCCA+AGG | 0.655094 | 8.2:-72886753 | MS.gene90279:CDS |
| TCCACAGAAGCTTACAACAG+TGG | 0.659825 | 8.2:+72890660 | None:intergenic |
| TGAAAGAGGCACGTGCAAGG+TGG | 0.666954 | 8.2:+72890902 | None:intergenic |
| ATGATGCTGATAGCGATATG+GGG | 0.667822 | 8.2:-72890834 | MS.gene90279:CDS |
| CTTCGATACCACATTACCGA+CGG | 0.677069 | 8.2:-72893028 | MS.gene90279:CDS |
| AACTCGGCAAGCCCACCTTG+GGG | 0.678033 | 8.2:+72886738 | None:intergenic |
| AATAGAAGGAAGACTGCCTG+AGG | 0.683184 | 8.2:+72890735 | None:intergenic |
| CAGTTCATCTACACACACAT+GGG | 0.683334 | 8.2:-72890932 | MS.gene90279:CDS |
| TCAACGGTGAAGCAAACACA+CGG | 0.687021 | 8.2:-72889225 | MS.gene90279:CDS |
| GCTATTGAAGCAGATCTGCG+AGG | 0.710579 | 8.2:+72889190 | None:intergenic |
| TGGCACATAAGCCTCAACAT+GGG | 0.713146 | 8.2:+72887882 | None:intergenic |
| AAATTCGTAACACTACAATG+AGG | 0.721351 | 8.2:+72885678 | None:intergenic |
| GAGGTGTGAATCAAGCCAAG+GGG | 0.748167 | 8.2:-72888088 | MS.gene90279:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 72885614 | 72894431 | 72885614 | ID=MS.gene90279 |
| chr8.2 | mRNA | 72885614 | 72894431 | 72885614 | ID=MS.gene90279.t1;Parent=MS.gene90279 |
| chr8.2 | exon | 72894285 | 72894431 | 72894285 | ID=MS.gene90279.t1.exon1;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72894285 | 72894431 | 72894285 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72893026 | 72893214 | 72893026 | ID=MS.gene90279.t1.exon2;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72893026 | 72893214 | 72893026 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72892503 | 72892556 | 72892503 | ID=MS.gene90279.t1.exon3;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72892503 | 72892556 | 72892503 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72892257 | 72892345 | 72892257 | ID=MS.gene90279.t1.exon4;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72892257 | 72892345 | 72892257 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72890675 | 72890951 | 72890675 | ID=MS.gene90279.t1.exon5;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72890675 | 72890951 | 72890675 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72890318 | 72890374 | 72890318 | ID=MS.gene90279.t1.exon6;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72890318 | 72890374 | 72890318 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72889994 | 72890025 | 72889994 | ID=MS.gene90279.t1.exon7;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72889994 | 72890025 | 72889994 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72889716 | 72889851 | 72889716 | ID=MS.gene90279.t1.exon8;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72889716 | 72889851 | 72889716 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72889135 | 72889308 | 72889135 | ID=MS.gene90279.t1.exon9;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72889135 | 72889308 | 72889135 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72887726 | 72888325 | 72887726 | ID=MS.gene90279.t1.exon10;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72887726 | 72888325 | 72887726 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72886683 | 72886820 | 72886683 | ID=MS.gene90279.t1.exon11;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72886683 | 72886820 | 72886683 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72886499 | 72886597 | 72886499 | ID=MS.gene90279.t1.exon12;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72886499 | 72886597 | 72886499 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72886163 | 72886263 | 72886163 | ID=MS.gene90279.t1.exon13;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72886163 | 72886263 | 72886163 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72885850 | 72885940 | 72885850 | ID=MS.gene90279.t1.exon14;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72885850 | 72885940 | 72885850 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| chr8.2 | exon | 72885614 | 72885736 | 72885614 | ID=MS.gene90279.t1.exon15;Parent=MS.gene90279.t1 |
| chr8.2 | CDS | 72885614 | 72885736 | 72885614 | ID=cds.MS.gene90279.t1;Parent=MS.gene90279.t1 |
| Gene Sequence |
| Protein sequence |
