AlfalfaGEDB | MS.gene90534

M. sativa cultivar XinJiangDaYe / MS.gene90534

KEGG: K08202
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90534.t1	XP_003596552.1	93.4	137	8	1	1	136	1	137	1.00E-68	269.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90534.t1	Q9LHQ6	66.2	130	40	3	10	136	10	138	4.2e-47	188.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90534.t1	A2Q643	93.4	137	8	1	1	136	1	137	7.3e-69	269.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056480	MS.gene90534	0.820307	7.35E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90534.t1	MTR_2g081930	93.431	137	8	1	1	136	1	137	3.27e-90	271
MS.gene90534.t1	MTR_2g081960	86.131	137	17	2	1	136	1	136	4.84e-82	238
MS.gene90534.t1	MTR_4g081480	60.403	149	41	4	1	136	1	144	1.24e-60	183
MS.gene90534.t1	MTR_4g030210	35.652	115	71	2	25	136	21	135	1.08e-18	81.3
MS.gene90534.t1	MTR_4g030040	34.400	125	77	3	17	136	6	130	1.31e-16	75.5
MS.gene90534.t1	MTR_4g030040	33.333	123	79	2	17	136	7	129	1.51e-16	75.1
MS.gene90534.t1	MTR_8g039070	31.148	122	79	3	19	136	10	130	1.33e-14	69.7
MS.gene90534.t1	MTR_8g039190	30.833	120	78	3	21	136	12	130	1.42e-13	66.6
MS.gene90534.t1	MTR_8g447340	29.851	134	85	3	12	136	8	141	1.42e-12	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90534.t1	AT3G20660	66.154	130	40	3	10	136	10	138	9.38e-58	187
MS.gene90534.t1	AT1G73220	36.283	113	71	1	25	136	38	150	3.68e-20	85.5
MS.gene90534.t1	AT1G79360	30.579	121	81	2	19	136	7	127	5.88e-15	70.5
MS.gene90534.t1	AT1G16390	32.353	136	79	3	11	136	3	135	1.73e-14	69.3
MS.gene90534.t1	AT1G79410	29.323	133	89	5	8	136	1	132	8.30e-13	64.3
MS.gene90534.t1	AT1G16370	25.547	137	94	4	8	136	1	137	4.30e-12	62.4

Find 0 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	GATTTGTGGTGATAAGTTTA+AGG	+	14456:16447-16466	MS.gene90534:CDS	30.0%
!	GGTTATGATTTTTGCTGATA+GGG	+	14456:16303-16322	MS.gene90534:CDS	30.0%
!	TGGTTATGATTTTTGCTGAT+AGG	+	14456:16302-16321	MS.gene90534:CDS	30.0%
!	TTTGGAAGCTTTTCATACTA+TGG	+	14456:16282-16301	MS.gene90534:CDS	30.0%
!!!	GATTTTTTCAGTTTCATTGG+TGG	-	14456:16176-16195	MS.gene90534:intergenic	30.0%
!!!	GCAGATTTTTTCAGTTTCAT+TGG	-	14456:16179-16198	MS.gene90534:intergenic	30.0%
	CATTCTAACAAGTCTTGCTT+GGG	+	14456:16258-16277	MS.gene90534:CDS	35.0%
	TCATTCTAACAAGTCTTGCT+TGG	+	14456:16257-16276	MS.gene90534:CDS	35.0%
!	TGTGGTGATAAGTTTAAGGT+TGG	+	14456:16451-16470	MS.gene90534:CDS	35.0%
!	TTCAAGCACTTTTCTTTGCT+GGG	+	14456:16479-16498	MS.gene90534:CDS	35.0%
!!	TCATTGGTGGTTTTTGATGA+TGG	-	14456:16163-16182	MS.gene90534:intergenic	35.0%
!!	TCTGAATGGAGTTTGATTTG+TGG	+	14456:16433-16452	MS.gene90534:CDS	35.0%
!!	TTTGATGATGGTGGTAAGAT+CGG	-	14456:16151-16170	MS.gene90534:intergenic	35.0%
	ACTGTGGTGAGTTTGGAAAA+TGG	+	14456:16221-16240	MS.gene90534:CDS	40.0%
	GAGAAATACTGTGGTGAGTT+TGG	+	14456:16214-16233	MS.gene90534:CDS	40.0%
	GAGATGCTTGAGAAATACTG+TGG	+	14456:16205-16224	MS.gene90534:CDS	40.0%
	TTCTTTGCTGGGTGTATGAT+TGG	+	14456:16490-16509	MS.gene90534:CDS	40.0%
!	GTTCAAGCACTTTTCTTTGC+TGG	+	14456:16478-16497	MS.gene90534:CDS	40.0%
!	TGAGTTGAGATCATCGGAAA+GGG	-	14456:16128-16147	MS.gene90534:intergenic	40.0%
!	TTGGAAGTGTGTTGAAGGTA+TGG	+	14456:16333-16352	MS.gene90534:CDS	40.0%
!!!	TTGGTGGTTTTTGATGATGG+TGG	-	14456:16160-16179	MS.gene90534:intergenic	40.0%
	AACAAGTCTTGCTTGGGCTT+TGG	+	14456:16264-16283	MS.gene90534:CDS	45.0%
	ATGCTTCTACGGTGTCTGAA+TGG	+	14456:16419-16438	MS.gene90534:CDS	45.0%
	CCTTCAACACACTTCCAATC+AGG	-	14456:16331-16350	MS.gene90534:intergenic	45.0%
	TTGCTGATAGGGAACCTGAT+TGG	+	14456:16314-16333	MS.gene90534:CDS	45.0%
!	CCTGATTGGAAGTGTGTTGA+AGG	+	14456:16328-16347	MS.gene90534:CDS	45.0%
!	GATCGGTGAGTTGAGATCAT+CGG	-	14456:16134-16153	MS.gene90534:intergenic	45.0%
!	GTGAGTTGAGATCATCGGAA+AGG	-	14456:16129-16148	MS.gene90534:intergenic	45.0%
!!!	CACCGTAGAAGCATCTTTTC+CGG	-	14456:16413-16432	MS.gene90534:intergenic	45.0%
	CATATCGCAGACACTTCCAC+CGG	-	14456:16368-16387	MS.gene90534:intergenic	50.0%
	CGCCGGAAAAGATGCTTCTA+CGG	+	14456:16408-16427	MS.gene90534:CDS	50.0%
	ATATGTCGTCGTCGTGGCAG+TGG	+	14456:16383-16402	MS.gene90534:CDS	55.0%
	TCTGCGATATGTCGTCGTCG+TGG	+	14456:16377-16396	MS.gene90534:CDS	55.0%
!	GAAGGTATGGAGTGTTCCGC+CGG	+	14456:16346-16365	MS.gene90534:CDS	55.0%
	ATCGCAGACACTTCCACCGG+CGG	-	14456:16365-16384	MS.gene90534:intergenic	60.0%
	TCGTCGTGGCAGTGGATCGC+CGG	+	14456:16391-16410	MS.gene90534:CDS	65.0%
!	GGTATGGAGTGTTCCGCCGG+TGG	+	14456:16349-16368	MS.gene90534:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
14456	gene	16106	16516	16106	ID=MS.gene90534
14456	mRNA	16106	16516	16106	ID=MS.gene90534.t1;Parent=MS.gene90534
14456	exon	16106	16516	16106	ID=MS.gene90534.t1.exon1;Parent=MS.gene90534.t1
14456	CDS	16106	16516	16106	ID=cds.MS.gene90534.t1;Parent=MS.gene90534.t1

Gene Sequence

>MS.gene90534

ATGTCGGCTACATTCTCATCCCTTTCCGATGATCTCAACTCACCGATCTTACCACCATCATCAAAAACCACCAATGAAACTGAAAAAATCTGCATCGATGAGATGCTTGAGAAATACTGTGGTGAGTTTGGAAAATGGCAGCTGAAACACTTCATTCTAACAAGTCTTGCTTGGGCTTTGGAAGCTTTTCATACTATGGTTATGATTTTTGCTGATAGGGAACCTGATTGGAAGTGTGTTGAAGGTATGGAGTGTTCCGCCGGTGGAAGTGTCTGCGATATGTCGTCGTCGTGGCAGTGGATCGCCGGAAAAGATGCTTCTACGGTGTCTGAATGGAGTTTGATTTGTGGTGATAAGTTTAAGGTTGGACTTGTTCAAGCACTTTTCTTTGCTGGGTGTATGATTGGTTAG

Protein sequence

>MS.gene90534.t1

MSATFSSLSDDLNSPILPPSSKTTNETEKICIDEMLEKYCGEFGKWQLKHFILTSLAWALEAFHTMVMIFADREPDWKCVEGMECSAGGSVCDMSSSWQWIAGKDASTVSEWSLICGDKFKVGLVQALFFAGCMIG