Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90725.t1 | KEH40192.1 | 96.4 | 419 | 15 | 0 | 1 | 419 | 52 | 470 | 1.50E-235 | 825.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90725.t1 | P81898 | 67.5 | 379 | 118 | 3 | 28 | 406 | 174 | 547 | 7.1e-146 | 518.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90725.t1 | A0A072VEE9 | 96.4 | 419 | 15 | 0 | 1 | 419 | 52 | 470 | 1.1e-235 | 825.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052732 | MS.gene90725 | 0.805065 | 1.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90725.t1 | MTR_1g023030 | 96.420 | 419 | 15 | 0 | 1 | 419 | 52 | 470 | 0.0 | 828 |
| MS.gene90725.t1 | MTR_1g023030 | 95.707 | 396 | 17 | 0 | 24 | 419 | 212 | 607 | 0.0 | 780 |
| MS.gene90725.t1 | MTR_1g023035 | 89.031 | 392 | 43 | 0 | 28 | 419 | 216 | 607 | 0.0 | 718 |
| MS.gene90725.t1 | MTR_5g083160 | 39.130 | 391 | 210 | 6 | 21 | 400 | 227 | 600 | 2.16e-84 | 270 |
| MS.gene90725.t1 | MTR_3g029720 | 54.386 | 57 | 25 | 1 | 62 | 118 | 10 | 65 | 2.24e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90725.t1 | AT3G14920 | 57.750 | 400 | 159 | 5 | 25 | 418 | 213 | 608 | 9.33e-159 | 461 |
| MS.gene90725.t1 | AT5G05480 | 39.031 | 392 | 223 | 8 | 10 | 394 | 196 | 578 | 1.33e-80 | 260 |
Find 87 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGACTTTACTGGTTTAAA+TGG | 0.220080 | 1.4:-1581009 | MS.gene90725:CDS |
| AATTTACATCTTTGGTTAGA+TGG | 0.236844 | 1.4:-1581099 | MS.gene90725:CDS |
| TAGATGCAAATTTACATCTT+TGG | 0.254882 | 1.4:-1581107 | MS.gene90725:CDS |
| ACTGCAGAACCAAGACAAAA+TGG | 0.289612 | 1.4:-1581879 | MS.gene90725:CDS |
| GATGGAAAGAAACATTTGTT+TGG | 0.297951 | 1.4:-1581165 | MS.gene90725:CDS |
| TCTCTAAAGGGTCCATTTCC+AGG | 0.305071 | 1.4:+1581354 | None:intergenic |
| CAAGACAAAATGGGATTGTT+TGG | 0.311105 | 1.4:-1581869 | MS.gene90725:CDS |
| CCAGTATAAATAACAGTAAA+AGG | 0.312494 | 1.4:+1581288 | None:intergenic |
| TTCATGAGAATGATGAGTTT+TGG | 0.320138 | 1.4:-1581431 | MS.gene90725:CDS |
| TCTCTAGTATCTGACTTTAC+TGG | 0.322552 | 1.4:-1581018 | MS.gene90725:CDS |
| TAGTGCAAAGAAGTCCATTT+TGG | 0.322647 | 1.4:-1580974 | MS.gene90725:CDS |
| CTCTTGTGGAGACCGATTAC+TGG | 0.325651 | 1.4:-1581252 | MS.gene90725:CDS |
| ATCAAAATCTTGAACAAAAC+TGG | 0.329209 | 1.4:+1580912 | None:intergenic |
| TTCCATTCAACGATGGGTTC+TGG | 0.333116 | 1.4:-1581545 | MS.gene90725:CDS |
| AACCCATCCAGTAGCCAAAA+TGG | 0.338352 | 1.4:+1580960 | None:intergenic |
| CTTTGCTACTCTAGGAGAAT+TGG | 0.348550 | 1.4:-1580523 | MS.gene90725:CDS |
| TACAACAGTTCAATGGTAAT+CGG | 0.350504 | 1.4:-1580889 | MS.gene90725:CDS |
| AAAAGAAGTCACTCTCGTTT+TGG | 0.352567 | 1.4:-1580451 | MS.gene90725:CDS |
| CAATGGTAATCGGGAAGAAC+GGG | 0.354448 | 1.4:-1580879 | MS.gene90725:CDS |
| AAGTCTAAGAGCGAGGATTC+CGG | 0.373862 | 1.4:-1580667 | MS.gene90725:CDS |
| AGTCTAAGAGCGAGGATTCC+GGG | 0.379780 | 1.4:-1580666 | MS.gene90725:CDS |
| ATCTTTCAACAACACTGTTC+GGG | 0.379828 | 1.4:-1580830 | MS.gene90725:CDS |
| ATGGAAAGAAACATTTGTTT+GGG | 0.381787 | 1.4:-1581164 | MS.gene90725:CDS |
| GACTCACACTAGAGCATAAT+GGG | 0.388174 | 1.4:+1580409 | None:intergenic |
| GAATGGAAGATTCCTTGAAA+TGG | 0.389497 | 1.4:+1581560 | None:intergenic |
| ACTGATAATACCCCTGGAAA+TGG | 0.392819 | 1.4:-1581366 | MS.gene90725:CDS |
| TTCAACTGATGTGGGTTTGA+AGG | 0.401901 | 1.4:-1581508 | MS.gene90725:CDS |
| TATCTTTCAACAACACTGTT+CGG | 0.403156 | 1.4:-1580831 | MS.gene90725:CDS |
| TTTGCAACAAGATATTCATT+TGG | 0.403286 | 1.4:+1581396 | None:intergenic |
| GGATGGGTTAGCTCCTCCTT+TGG | 0.410230 | 1.4:-1580946 | MS.gene90725:CDS |
| ACCCTTGATGAGAAAGTTGT+TGG | 0.412463 | 1.4:-1581321 | MS.gene90725:CDS |
| AATGGAAGATTCCTTGAAAT+GGG | 0.412954 | 1.4:+1581561 | None:intergenic |
| TGACAAATGCATTGAATGTT+TGG | 0.414168 | 1.4:-1581134 | MS.gene90725:CDS |
| AGAAAGTTGTTGGTTCGGTT+TGG | 0.420865 | 1.4:-1581311 | MS.gene90725:CDS |
| ATTTGATCTTGCCCATTTCA+AGG | 0.426665 | 1.4:-1581572 | MS.gene90725:CDS |
| GAATCACGTTGACAAACCTT+TGG | 0.434903 | 1.4:-1581046 | MS.gene90725:CDS |
| TTCATCTGAGTCCAAGTAAA+GGG | 0.436516 | 1.4:+1580753 | None:intergenic |
| TGTGTGTCGTCGACCAAGTC+TGG | 0.440978 | 1.4:+1580787 | None:intergenic |
| TGATGAGAAAGTTGTTGGTT+CGG | 0.445847 | 1.4:-1581316 | MS.gene90725:CDS |
| GTTATTTCAATATCATAAGA+TGG | 0.450864 | 1.4:+1581210 | None:intergenic |
| TAGAAAGCTATTTGAAATCC+CGG | 0.456802 | 1.4:+1580648 | None:intergenic |
| GGTAACTACAACCTCTCTAA+AGG | 0.457878 | 1.4:+1581341 | None:intergenic |
| GGACTCACACTAGAGCATAA+TGG | 0.461020 | 1.4:+1580408 | None:intergenic |
| AAGGAGCCGATCCCAGTAAT+CGG | 0.470101 | 1.4:+1581240 | None:intergenic |
| TTACTGTTATTTATACTGGA+GGG | 0.470861 | 1.4:-1581284 | MS.gene90725:CDS |
| GCAACAAGATATTCATTTGG+AGG | 0.471426 | 1.4:+1581399 | None:intergenic |
| GTAACTACAACCTCTCTAAA+GGG | 0.476716 | 1.4:+1581342 | None:intergenic |
| AATATTACTGATAATACCCC+TGG | 0.477323 | 1.4:-1581372 | MS.gene90725:CDS |
| TGTGGGTTTGAAGGAATTTG+TGG | 0.477582 | 1.4:-1581499 | MS.gene90725:CDS |
| AATTCAAAATTCAACTGATG+TGG | 0.484511 | 1.4:-1581517 | MS.gene90725:CDS |
| ATTCAAAATTCAACTGATGT+GGG | 0.485399 | 1.4:-1581516 | MS.gene90725:CDS |
| GGAAAGAGCAGTAGAACAGA+AGG | 0.495994 | 1.4:-1581078 | MS.gene90725:CDS |
| AACCAGAACCCATCGTTGAA+TGG | 0.500047 | 1.4:+1581543 | None:intergenic |
| CTGCAGAACCAAGACAAAAT+GGG | 0.502842 | 1.4:-1581878 | MS.gene90725:CDS |
| TACTGTTATTTATACTGGAG+GGG | 0.502938 | 1.4:-1581283 | MS.gene90725:CDS |
| ACAACAGTTCAATGGTAATC+GGG | 0.504417 | 1.4:-1580888 | MS.gene90725:CDS |
| AATTTGGTTGTAAGTGGAGT+GGG | 0.506275 | 1.4:-1580583 | MS.gene90725:CDS |
| AACCAACAACTTTCTCATCA+AGG | 0.513482 | 1.4:+1581319 | None:intergenic |
| CTCTAAAGGGTCCATTTCCA+GGG | 0.517376 | 1.4:+1581355 | None:intergenic |
| TCAATGGTAATCGGGAAGAA+CGG | 0.523216 | 1.4:-1580880 | MS.gene90725:CDS |
| GTTCATCTGAGTCCAAGTAA+AGG | 0.527494 | 1.4:+1580752 | None:intergenic |
| TTTACTGTTATTTATACTGG+AGG | 0.529623 | 1.4:-1581285 | MS.gene90725:CDS |
| TCTTGTGGAGACCGATTACT+GGG | 0.535316 | 1.4:-1581251 | MS.gene90725:CDS |
| GGAATCTTCCATTCAACGAT+GGG | 0.539031 | 1.4:-1581551 | MS.gene90725:CDS |
| TTATTTCAATATCATAAGAT+GGG | 0.558227 | 1.4:+1581211 | None:intergenic |
| TGGAGACCGATTACTGGGAT+CGG | 0.563934 | 1.4:-1581246 | MS.gene90725:CDS |
| TCCATCGTCCTATCCAGACT+TGG | 0.568206 | 1.4:-1580800 | MS.gene90725:CDS |
| ATTTGGTTGTAAGTGGAGTG+GGG | 0.569265 | 1.4:-1580582 | MS.gene90725:CDS |
| GATACTAGAGATTCAACCAA+AGG | 0.572969 | 1.4:+1581030 | None:intergenic |
| ACCAACAACTTTCTCATCAA+GGG | 0.578875 | 1.4:+1581320 | None:intergenic |
| TTTGGTTGTAAGTGGAGTGG+GGG | 0.582874 | 1.4:-1580581 | MS.gene90725:CDS |
| GCAATGAACTTTGCTACTCT+AGG | 0.583245 | 1.4:-1580531 | MS.gene90725:CDS |
| AGGAATCTTCCATTCAACGA+TGG | 0.589358 | 1.4:-1581552 | MS.gene90725:CDS |
| GAATTTGGTTGTAAGTGGAG+TGG | 0.594445 | 1.4:-1580584 | MS.gene90725:CDS |
| ATCATAAGATGGGAGATCAA+AGG | 0.606229 | 1.4:+1581221 | None:intergenic |
| GAGGGGTTAATCCTCTCTTG+TGG | 0.626252 | 1.4:-1581266 | MS.gene90725:CDS |
| GCAGGACGGCCAGGGTACAA+TGG | 0.628679 | 1.4:-1580617 | MS.gene90725:CDS |
| GGTTGTGATATTACCAAAGG+AGG | 0.631202 | 1.4:+1580933 | None:intergenic |
| ACTGGTTGTGATATTACCAA+AGG | 0.631749 | 1.4:+1580930 | None:intergenic |
| AATGGTAATCGGGAAGAACG+GGG | 0.638379 | 1.4:-1580878 | MS.gene90725:CDS |
| GTCGTCGACCAAGTCTGGAT+AGG | 0.644148 | 1.4:+1580792 | None:intergenic |
| GTAATCGGTCTCCACAAGAG+AGG | 0.655301 | 1.4:+1581255 | None:intergenic |
| TGGAAATGGACCCTTTAGAG+AGG | 0.663228 | 1.4:-1581352 | MS.gene90725:CDS |
| ACCAAGTCTGGATAGGACGA+TGG | 0.671192 | 1.4:+1580799 | None:intergenic |
| ATGGTAATCGGGAAGAACGG+GGG | 0.680994 | 1.4:-1580877 | MS.gene90725:CDS |
| TCTAAAGGGTCCATTTCCAG+GGG | 0.691105 | 1.4:+1581356 | None:intergenic |
| TGAGAATAAGTCTAAGAGCG+AGG | 0.691822 | 1.4:-1580674 | MS.gene90725:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTCAATATCATAAGAT+GGG | + | chr1.4:1581114-1581133 | None:intergenic | 15.0% |
| !!! | AAAAAACAAAAAGACTTTTA+TGG | - | chr1.4:1580647-1580666 | MS.gene90725:CDS | 15.0% |
| !! | AATGGTTGTTAAAAAGAATT+TGG | - | chr1.4:1581723-1581742 | MS.gene90725:intron | 20.0% |
| !!! | GTTATTTCAATATCATAAGA+TGG | + | chr1.4:1581115-1581134 | None:intergenic | 20.0% |
| !!! | TCAAATTTTACATTAGGATT+CGG | - | chr1.4:1581625-1581644 | MS.gene90725:intron | 20.0% |
| ! | AAAAAGAATTTGGTTGTAAG+TGG | - | chr1.4:1581733-1581752 | MS.gene90725:intron | 25.0% |
| ! | AATTCAAAATTCAACTGATG+TGG | - | chr1.4:1580805-1580824 | MS.gene90725:CDS | 25.0% |
| ! | AATTTACATCTTTGGTTAGA+TGG | - | chr1.4:1581223-1581242 | MS.gene90725:CDS | 25.0% |
| ! | AGTTTGATTCTTTAGCATTT+AGG | - | chr1.4:1580705-1580724 | MS.gene90725:CDS | 25.0% |
| ! | ATCAAAATCTTGAACAAAAC+TGG | + | chr1.4:1581413-1581432 | None:intergenic | 25.0% |
| ! | ATGGAAAGAAACATTTGTTT+GGG | - | chr1.4:1581158-1581177 | MS.gene90725:CDS | 25.0% |
| ! | ATTCAAAATTCAACTGATGT+GGG | - | chr1.4:1580806-1580825 | MS.gene90725:CDS | 25.0% |
| ! | ATTGTCGATAAAACATATAC+TGG | - | chr1.4:1580560-1580579 | MS.gene90725:CDS | 25.0% |
| ! | CCAGTATAAATAACAGTAAA+AGG | + | chr1.4:1581037-1581056 | None:intergenic | 25.0% |
| ! | TAGATGCAAATTTACATCTT+TGG | - | chr1.4:1581215-1581234 | MS.gene90725:CDS | 25.0% |
| ! | TTTGCAACAAGATATTCATT+TGG | + | chr1.4:1580929-1580948 | None:intergenic | 25.0% |
| !! | TTACTGTTATTTATACTGGA+GGG | - | chr1.4:1581038-1581057 | MS.gene90725:CDS | 25.0% |
| !! | TTTACTGTTATTTATACTGG+AGG | - | chr1.4:1581037-1581056 | MS.gene90725:CDS | 25.0% |
| !!! | ATTGAAATAACCCCTTTTTT+GGG | - | chr1.4:1581124-1581143 | MS.gene90725:CDS | 25.0% |
| !!! | CCTTTTACTGTTATTTATAC+TGG | - | chr1.4:1581034-1581053 | MS.gene90725:CDS | 25.0% |
| !!! | GATATTGCTATTCACTTTTA+CGG | - | chr1.4:1580596-1580615 | MS.gene90725:CDS | 25.0% |
| !!! | GCTAAAGTTTGATTTTTTTG+AGG | + | chr1.4:1580524-1580543 | None:intergenic | 25.0% |
| !!! | GCTGTTTCAAATTTTACATT+AGG | - | chr1.4:1581619-1581638 | MS.gene90725:intron | 25.0% |
| !!! | TATTGAAATAACCCCTTTTT+TGG | - | chr1.4:1581123-1581142 | MS.gene90725:CDS | 25.0% |
| !!! | TTTTGATTACAACAGTTCAA+TGG | - | chr1.4:1581426-1581445 | MS.gene90725:CDS | 25.0% |
| AATATTACTGATAATACCCC+TGG | - | chr1.4:1580950-1580969 | MS.gene90725:CDS | 30.0% | |
| AATGGAAGATTCCTTGAAAT+GGG | + | chr1.4:1580764-1580783 | None:intergenic | 30.0% | |
| GATGGAAAGAAACATTTGTT+TGG | - | chr1.4:1581157-1581176 | MS.gene90725:CDS | 30.0% | |
| TACAACAGTTCAATGGTAAT+CGG | - | chr1.4:1581433-1581452 | MS.gene90725:CDS | 30.0% | |
| TATCTTTCAACAACACTGTT+CGG | - | chr1.4:1581491-1581510 | MS.gene90725:CDS | 30.0% | |
| TATGAGTGTTCTGTCTAAAA+GGG | + | chr1.4:1580676-1580695 | None:intergenic | 30.0% | |
| TGACAAATGCATTGAATGTT+TGG | - | chr1.4:1581188-1581207 | MS.gene90725:CDS | 30.0% | |
| TTATGAGTGTTCTGTCTAAA+AGG | + | chr1.4:1580677-1580696 | None:intergenic | 30.0% | |
| ! | CAGAAATTTTTCCCTTTACT+TGG | - | chr1.4:1581558-1581577 | MS.gene90725:CDS | 30.0% |
| ! | TACTGTTATTTATACTGGAG+GGG | - | chr1.4:1581039-1581058 | MS.gene90725:CDS | 30.0% |
| ! | TAGAAAGCTATTTGAAATCC+CGG | + | chr1.4:1581677-1581696 | None:intergenic | 30.0% |
| ! | TAGCTTTCTAAAAAATGTGC+AGG | - | chr1.4:1581687-1581706 | MS.gene90725:intron | 30.0% |
| ! | TTCATGAGAATGATGAGTTT+TGG | - | chr1.4:1580891-1580910 | MS.gene90725:CDS | 30.0% |
| ! | TTTCTAAAAAATGTGCAGGA+CGG | - | chr1.4:1581691-1581710 | MS.gene90725:intron | 30.0% |
| !! | TCTGACTTTACTGGTTTAAA+TGG | - | chr1.4:1581313-1581332 | MS.gene90725:CDS | 30.0% |
| !! | TTTTTGAGGATTCAACAACA+AGG | + | chr1.4:1580510-1580529 | None:intergenic | 30.0% |
| !!! | TTGAAATAACCCCTTTTTTG+GGG | - | chr1.4:1581125-1581144 | MS.gene90725:CDS | 30.0% |
| AACCAACAACTTTCTCATCA+AGG | + | chr1.4:1581006-1581025 | None:intergenic | 35.0% | |
| AATTTGGTTGTAAGTGGAGT+GGG | - | chr1.4:1581739-1581758 | MS.gene90725:intron | 35.0% | |
| ACAACAGTTCAATGGTAATC+GGG | - | chr1.4:1581434-1581453 | MS.gene90725:CDS | 35.0% | |
| ACCAACAACTTTCTCATCAA+GGG | + | chr1.4:1581005-1581024 | None:intergenic | 35.0% | |
| ACTGGTTGTGATATTACCAA+AGG | + | chr1.4:1581395-1581414 | None:intergenic | 35.0% | |
| ATCATAAGATGGGAGATCAA+AGG | + | chr1.4:1581104-1581123 | None:intergenic | 35.0% | |
| ATCTTTCAACAACACTGTTC+GGG | - | chr1.4:1581492-1581511 | MS.gene90725:CDS | 35.0% | |
| ATTTGATCTTGCCCATTTCA+AGG | - | chr1.4:1580750-1580769 | MS.gene90725:CDS | 35.0% | |
| CAAGACAAAATGGGATTGTT+TGG | - | chr1.4:1580453-1580472 | MS.gene90725:CDS | 35.0% | |
| CAATATTGTCCCCAAAAAAG+GGG | + | chr1.4:1581137-1581156 | None:intergenic | 35.0% | |
| CCAATATTGTCCCCAAAAAA+GGG | + | chr1.4:1581138-1581157 | None:intergenic | 35.0% | |
| GAATGGAAGATTCCTTGAAA+TGG | + | chr1.4:1580765-1580784 | None:intergenic | 35.0% | |
| GATACTAGAGATTCAACCAA+AGG | + | chr1.4:1581295-1581314 | None:intergenic | 35.0% | |
| GCAACAAGATATTCATTTGG+AGG | + | chr1.4:1580926-1580945 | None:intergenic | 35.0% | |
| GTAACTACAACCTCTCTAAA+GGG | + | chr1.4:1580983-1581002 | None:intergenic | 35.0% | |
| GTGTTGAAAAAGACATCACA+AGG | - | chr1.4:1580477-1580496 | MS.gene90725:CDS | 35.0% | |
| TCCAATATTGTCCCCAAAAA+AGG | + | chr1.4:1581139-1581158 | None:intergenic | 35.0% | |
| TCTCTAGTATCTGACTTTAC+TGG | - | chr1.4:1581304-1581323 | MS.gene90725:CDS | 35.0% | |
| TTCATCTGAGTCCAAGTAAA+GGG | + | chr1.4:1581572-1581591 | None:intergenic | 35.0% | |
| ! | AAAAGAAGTCACTCTCGTTT+TGG | - | chr1.4:1581871-1581890 | MS.gene90725:CDS | 35.0% |
| ! | ACAGCTCTATAAGCATTTTG+AGG | + | chr1.4:1580851-1580870 | None:intergenic | 35.0% |
| ! | CAAACAATCCCATTTTGTCT+TGG | + | chr1.4:1580455-1580474 | None:intergenic | 35.0% |
| ! | TAGTGCAAAGAAGTCCATTT+TGG | - | chr1.4:1581348-1581367 | MS.gene90725:CDS | 35.0% |
| ! | TGATGAGAAAGTTGTTGGTT+CGG | - | chr1.4:1581006-1581025 | MS.gene90725:CDS | 35.0% |
| ! | TTTTAACAACCATTGTACCC+TGG | + | chr1.4:1581717-1581736 | None:intergenic | 35.0% |
| !! | TTTTTGGGGACAATATTGGA+TGG | - | chr1.4:1581139-1581158 | MS.gene90725:CDS | 35.0% |
| ACCCTTGATGAGAAAGTTGT+TGG | - | chr1.4:1581001-1581020 | MS.gene90725:CDS | 40.0% | |
| ACTGATAATACCCCTGGAAA+TGG | - | chr1.4:1580956-1580975 | MS.gene90725:CDS | 40.0% | |
| ACTGCAGAACCAAGACAAAA+TGG | - | chr1.4:1580443-1580462 | MS.gene90725:CDS | 40.0% | |
| AGGAATCTTCCATTCAACGA+TGG | - | chr1.4:1580770-1580789 | MS.gene90725:CDS | 40.0% | |
| ATTTGGTTGTAAGTGGAGTG+GGG | - | chr1.4:1581740-1581759 | MS.gene90725:intron | 40.0% | |
| CTGCAGAACCAAGACAAAAT+GGG | - | chr1.4:1580444-1580463 | MS.gene90725:CDS | 40.0% | |
| GAATCACGTTGACAAACCTT+TGG | - | chr1.4:1581276-1581295 | MS.gene90725:CDS | 40.0% | |
| GAATTTGGTTGTAAGTGGAG+TGG | - | chr1.4:1581738-1581757 | MS.gene90725:intron | 40.0% | |
| GCAATGAACTTTGCTACTCT+AGG | - | chr1.4:1581791-1581810 | MS.gene90725:intron | 40.0% | |
| GGAATCTTCCATTCAACGAT+GGG | - | chr1.4:1580771-1580790 | MS.gene90725:CDS | 40.0% | |
| GGTAACTACAACCTCTCTAA+AGG | + | chr1.4:1580984-1581003 | None:intergenic | 40.0% | |
| GGTTGTGATATTACCAAAGG+AGG | + | chr1.4:1581392-1581411 | None:intergenic | 40.0% | |
| GTTCATCTGAGTCCAAGTAA+AGG | + | chr1.4:1581573-1581592 | None:intergenic | 40.0% | |
| TCAATGGTAATCGGGAAGAA+CGG | - | chr1.4:1581442-1581461 | MS.gene90725:CDS | 40.0% | |
| TGAGAATAAGTCTAAGAGCG+AGG | - | chr1.4:1581648-1581667 | MS.gene90725:intron | 40.0% | |
| TGTGGGTTTGAAGGAATTTG+TGG | - | chr1.4:1580823-1580842 | MS.gene90725:CDS | 40.0% | |
| TTCAACTGATGTGGGTTTGA+AGG | - | chr1.4:1580814-1580833 | MS.gene90725:CDS | 40.0% | |
| ! | CTTTGCTACTCTAGGAGAAT+TGG | - | chr1.4:1581799-1581818 | MS.gene90725:intron | 40.0% |
| !! | AGAAAGTTGTTGGTTCGGTT+TGG | - | chr1.4:1581011-1581030 | MS.gene90725:CDS | 40.0% |
| !! | TCACTTTTACGGTCACAAGT+GGG | - | chr1.4:1580607-1580626 | MS.gene90725:CDS | 40.0% |
| !! | TTCACTTTTACGGTCACAAG+TGG | - | chr1.4:1580606-1580625 | MS.gene90725:CDS | 40.0% |
| !!! | AAGAAGTCCATTTTGGCTAC+TGG | - | chr1.4:1581355-1581374 | MS.gene90725:CDS | 40.0% |
| !!! | CCCTTTTTTGGGGACAATAT+TGG | - | chr1.4:1581135-1581154 | MS.gene90725:CDS | 40.0% |
| AACCAGAACCCATCGTTGAA+TGG | + | chr1.4:1580782-1580801 | None:intergenic | 45.0% | |
| AACCCATCCAGTAGCCAAAA+TGG | + | chr1.4:1581365-1581384 | None:intergenic | 45.0% | |
| AAGTCTAAGAGCGAGGATTC+CGG | - | chr1.4:1581655-1581674 | MS.gene90725:intron | 45.0% | |
| AATGGTAATCGGGAAGAACG+GGG | - | chr1.4:1581444-1581463 | MS.gene90725:CDS | 45.0% | |
| CAATGGTAATCGGGAAGAAC+GGG | - | chr1.4:1581443-1581462 | MS.gene90725:CDS | 45.0% | |
| GGAAAGAGCAGTAGAACAGA+AGG | - | chr1.4:1581244-1581263 | MS.gene90725:CDS | 45.0% | |
| TCTAAAGGGTCCATTTCCAG+GGG | + | chr1.4:1580969-1580988 | None:intergenic | 45.0% | |
| TCTTGTGGAGACCGATTACT+GGG | - | chr1.4:1581071-1581090 | MS.gene90725:CDS | 45.0% | |
| TTTGGTTGTAAGTGGAGTGG+GGG | - | chr1.4:1581741-1581760 | MS.gene90725:intron | 45.0% | |
| ! | CTCTAAAGGGTCCATTTCCA+GGG | + | chr1.4:1580970-1580989 | None:intergenic | 45.0% |
| ! | TCTCTAAAGGGTCCATTTCC+AGG | + | chr1.4:1580971-1580990 | None:intergenic | 45.0% |
| ! | TGGAAATGGACCCTTTAGAG+AGG | - | chr1.4:1580970-1580989 | MS.gene90725:CDS | 45.0% |
| ! | TTCCATTCAACGATGGGTTC+TGG | - | chr1.4:1580777-1580796 | MS.gene90725:CDS | 45.0% |
| !!! | AGTCCATTTTGGCTACTGGA+TGG | - | chr1.4:1581359-1581378 | MS.gene90725:CDS | 45.0% |
| !!! | GTCCATTTTGGCTACTGGAT+GGG | - | chr1.4:1581360-1581379 | MS.gene90725:CDS | 45.0% |
| AAAAAATGTGCAGGACGGCC+AGG | - | chr1.4:1581696-1581715 | MS.gene90725:intron | 50.0% | |
| AAAAATGTGCAGGACGGCCA+GGG | - | chr1.4:1581697-1581716 | MS.gene90725:intron | 50.0% | |
| AAGGAGCCGATCCCAGTAAT+CGG | + | chr1.4:1581085-1581104 | None:intergenic | 50.0% | |
| ACCAAGTCTGGATAGGACGA+TGG | + | chr1.4:1581526-1581545 | None:intergenic | 50.0% | |
| AGTCTAAGAGCGAGGATTCC+GGG | - | chr1.4:1581656-1581675 | MS.gene90725:intron | 50.0% | |
| ATGGTAATCGGGAAGAACGG+GGG | - | chr1.4:1581445-1581464 | MS.gene90725:CDS | 50.0% | |
| CTCTTGTGGAGACCGATTAC+TGG | - | chr1.4:1581070-1581089 | MS.gene90725:CDS | 50.0% | |
| GAGGGGTTAATCCTCTCTTG+TGG | - | chr1.4:1581056-1581075 | MS.gene90725:CDS | 50.0% | |
| GTAATCGGTCTCCACAAGAG+AGG | + | chr1.4:1581070-1581089 | None:intergenic | 50.0% | |
| TCCATCGTCCTATCCAGACT+TGG | - | chr1.4:1581522-1581541 | MS.gene90725:CDS | 50.0% | |
| TGGAGACCGATTACTGGGAT+CGG | - | chr1.4:1581076-1581095 | MS.gene90725:CDS | 50.0% | |
| GTCGTCGACCAAGTCTGGAT+AGG | + | chr1.4:1581533-1581552 | None:intergenic | 55.0% | |
| TGTGTGTCGTCGACCAAGTC+TGG | + | chr1.4:1581538-1581557 | None:intergenic | 55.0% | |
| !! | GGATGGGTTAGCTCCTCCTT+TGG | - | chr1.4:1581376-1581395 | MS.gene90725:CDS | 55.0% |
| GCAGGACGGCCAGGGTACAA+TGG | - | chr1.4:1581705-1581724 | MS.gene90725:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1580417 | 1581927 | 1580417 | ID=MS.gene90725 |
| chr1.4 | mRNA | 1580417 | 1581927 | 1580417 | ID=MS.gene90725.t1;Parent=MS.gene90725 |
| chr1.4 | exon | 1581846 | 1581927 | 1581846 | ID=MS.gene90725.t1.exon1;Parent=MS.gene90725.t1 |
| chr1.4 | CDS | 1581846 | 1581927 | 1581846 | ID=cds.MS.gene90725.t1;Parent=MS.gene90725.t1 |
| chr1.4 | exon | 1580417 | 1581594 | 1580417 | ID=MS.gene90725.t1.exon2;Parent=MS.gene90725.t1 |
| chr1.4 | CDS | 1580417 | 1581594 | 1580417 | ID=cds.MS.gene90725.t1;Parent=MS.gene90725.t1 |
| Gene Sequence |
| Protein sequence |
