AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90852

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90852.t1 MTR_1g115415 98.643 442 6 0 1 442 60 501 0.0 876
MS.gene90852.t1 MTR_8g105560 82.727 440 23 2 1 440 38 424 0.0 706
MS.gene90852.t1 MTR_5g068860 53.000 400 186 1 12 409 103 502 1.00e-151 441
MS.gene90852.t1 MTR_4g070060 25.556 360 258 5 45 397 235 591 6.11e-35 137
MS.gene90852.t1 MTR_2g034600 29.123 285 190 6 116 396 211 487 1.37e-28 118
MS.gene90852.t1 MTR_2g034600 22.348 264 179 5 8 267 189 430 2.80e-12 68.9
MS.gene90852.t1 MTR_2g034600 29.021 286 191 6 115 396 271 548 2.07e-28 118
MS.gene90852.t1 MTR_2g034600 22.348 264 179 5 8 267 250 491 3.22e-12 68.9
MS.gene90852.t1 MTR_2g034600 29.021 286 191 6 115 396 275 552 2.27e-28 117
MS.gene90852.t1 MTR_2g034600 22.348 264 179 5 8 267 254 495 2.99e-12 68.9
MS.gene90852.t1 MTR_6g003960 27.164 335 238 6 65 397 263 593 4.37e-27 114
MS.gene90852.t1 MTR_4g084630 22.115 312 199 5 86 392 47 319 2.11e-25 106
MS.gene90852.t1 MTR_4g084630 25.108 231 147 3 23 252 45 250 4.40e-17 82.4
MS.gene90852.t1 MTR_5g094610 23.232 297 217 7 84 373 158 450 4.23e-19 90.1
MS.gene90852.t1 MTR_5g094610 24.254 268 187 8 22 277 194 457 1.48e-15 79.0
MS.gene90852.t1 MTR_2g049780 26.923 208 116 3 222 393 99 306 6.31e-16 78.6
MS.gene90852.t1 MTR_2g067230 23.582 335 164 12 86 414 75 323 1.50e-14 74.7
MS.gene90852.t1 MTR_5g041630 27.451 255 137 7 151 397 88 302 3.33e-14 73.6
MS.gene90852.t1 MTR_3g092710 22.819 298 184 7 99 391 235 491 1.59e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90852.t1 AT2G44020 80.813 443 84 1 1 442 65 507 0.0 733
MS.gene90852.t1 AT4G02990 53.435 393 183 0 13 405 112 504 1.74e-153 446
MS.gene90852.t1 AT4G02990 53.435 393 183 0 13 405 112 504 1.74e-153 446
MS.gene90852.t1 AT2G21710 25.000 352 260 3 77 427 278 626 3.61e-39 149
MS.gene90852.t1 AT2G21710 26.070 257 176 5 7 252 272 525 1.64e-17 85.5
MS.gene90852.t1 AT1G78930 26.488 336 240 6 65 397 249 580 1.96e-31 127
MS.gene90852.t1 AT4G38160 25.912 274 194 4 128 395 54 324 2.24e-29 117
MS.gene90852.t1 AT4G38160 24.020 204 153 2 65 266 63 266 8.20e-16 78.6
MS.gene90852.t1 AT4G38160 25.912 274 194 4 128 395 54 324 2.24e-29 117
MS.gene90852.t1 AT4G38160 24.020 204 153 2 65 266 63 266 8.20e-16 78.6
MS.gene90852.t1 AT4G38160 25.912 274 194 4 128 395 54 324 5.26e-29 117
MS.gene90852.t1 AT4G38160 23.902 205 154 2 65 267 63 267 1.24e-15 78.6
MS.gene90852.t1 AT4G38160 25.912 274 194 4 128 395 54 324 5.37e-29 117
MS.gene90852.t1 AT4G38160 23.902 205 154 2 65 267 63 267 1.40e-15 78.2
MS.gene90852.t1 AT2G21710 23.929 280 211 2 77 355 278 556 6.73e-27 113
MS.gene90852.t1 AT2G21710 26.070 257 176 5 7 252 272 525 1.36e-17 85.5
MS.gene90852.t1 AT2G21710 23.741 278 210 2 77 353 278 554 6.17e-26 110
MS.gene90852.t1 AT2G21710 26.070 257 176 5 7 252 272 525 1.55e-17 85.5
MS.gene90852.t1 AT4G14605 25.130 386 268 9 14 392 97 468 8.45e-24 103
MS.gene90852.t1 AT4G14605 25.130 386 268 9 14 392 97 468 8.45e-24 103
MS.gene90852.t1 AT5G55580 26.484 219 154 4 158 371 119 335 6.16e-19 88.6
MS.gene90852.t1 AT5G55580 25.000 260 180 7 20 267 79 335 3.69e-16 80.5
MS.gene90852.t1 AT5G55580 23.853 218 160 3 84 299 117 330 1.86e-14 75.1
MS.gene90852.t1 AT5G55580 26.484 219 154 4 158 371 225 441 3.72e-18 87.0
MS.gene90852.t1 AT5G55580 25.000 260 180 7 20 267 185 441 4.33e-16 80.9
MS.gene90852.t1 AT5G55580 23.767 223 164 3 84 304 223 441 4.89e-14 74.3
MS.gene90852.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.01e-16 80.5
MS.gene90852.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.01e-16 80.5
MS.gene90852.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.01e-16 80.5
MS.gene90852.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.01e-16 80.5
MS.gene90852.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.01e-16 80.5
MS.gene90852.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.01e-16 80.5
MS.gene90852.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.01e-16 80.5
MS.gene90852.t1 AT5G54180 23.649 296 183 7 101 393 235 490 3.87e-15 77.8
MS.gene90852.t1 AT1G61980 24.118 340 235 10 77 403 81 410 7.77e-15 76.6
MS.gene90852.t1 AT1G61980 24.118 340 235 10 77 403 81 410 7.77e-15 76.6
MS.gene90852.t1 AT1G61980 24.118 340 235 10 77 403 81 410 7.77e-15 76.6
MS.gene90852.t1 AT2G34620 26.887 212 119 4 222 397 85 296 1.86e-13 71.2
MS.gene90852.t1 AT2G03050 29.317 249 151 9 158 395 39 273 5.80e-13 69.7
MS.gene90852.t1 AT2G03050 29.317 249 151 9 158 395 38 272 6.18e-13 69.3
MS.gene90852.t1 AT5G55580 25.000 172 127 2 84 253 223 394 1.63e-12 69.3
MS.gene90852.t1 AT5G55580 26.425 193 130 5 20 200 185 377 6.62e-12 67.4
MS.gene90852.t1 AT2G36000 23.506 251 169 8 158 399 79 315 3.71e-12 67.4
MS.gene90852.t1 AT2G36000 23.387 248 167 8 158 396 79 312 7.93e-12 66.6

Find 104 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTATCCTTTGATTT+TGG 0.075546 1.4:-87572258 MS.gene90852:CDS
GTTGAGTTTATTCAGAAATT+AGG 0.154219 1.4:-87572299 MS.gene90852:CDS
GTTGATTACTTGGTTAATTT+AGG 0.162887 1.4:-87571879 MS.gene90852:CDS
GCTCAGTATCCGCAGATTAT+TGG 0.210052 1.4:-87571717 MS.gene90852:CDS
TCCTGATGAATTGCAGGATT+TGG 0.241747 1.4:-87572357 MS.gene90852:CDS
AAAGTATAGGTCCTTCATTC+TGG 0.247502 1.4:-87571245 MS.gene90852:CDS
TTGATTACTTGGTTAATTTA+GGG 0.247846 1.4:-87571878 MS.gene90852:CDS
TCACTTATAGTTTGGAATCT+AGG 0.287748 1.4:-87571386 MS.gene90852:CDS
AGAATACTTCACTTATAGTT+TGG 0.295127 1.4:-87571394 MS.gene90852:CDS
CTTCGATTATCTCAAGGGTT+TGG 0.298946 1.4:-87572387 MS.gene90852:CDS
GTTGATTGTTTGATTAGTTT+TGG 0.307251 1.4:-87571771 MS.gene90852:CDS
CTCTTAAGCCTCTGGTATCT+AGG 0.309752 1.4:+87571357 None:intergenic
TTCGATTATCTCAAGGGTTT+GGG 0.314201 1.4:-87572386 MS.gene90852:CDS
GGATAAAGTGTTCATTGAAT+TGG 0.316271 1.4:-87571329 MS.gene90852:CDS
TTGAGTTTATTCAGAAATTA+GGG 0.329984 1.4:-87572298 MS.gene90852:CDS
AGCTTAAACCCTAAAAGTTC+AGG 0.348375 1.4:+87572032 None:intergenic
ATGTAGAGAAAGATGATATT+GGG 0.358260 1.4:-87572073 MS.gene90852:CDS
AATTATTCCTGATGAATTGC+AGG 0.358521 1.4:-87572363 MS.gene90852:CDS
CCTGTTATTAAGTTTCTTAG+AGG 0.361016 1.4:-87572101 MS.gene90852:CDS
AAACTATAAGTGAAGTATTC+TGG 0.362016 1.4:+87571396 None:intergenic
AAAGCCTCTTGTTGATTACT+TGG 0.364443 1.4:-87571889 MS.gene90852:CDS
TCAAAATGTGATTATGAAAC+CGG 0.364444 1.4:-87571577 MS.gene90852:CDS
CTAATCAAACAATCAACATT+AGG 0.365413 1.4:+87571777 None:intergenic
ATCTGAAACTATATCATTCC+CGG 0.367449 1.4:+87571200 None:intergenic
CCTCTAAGAAACTTAATAAC+AGG 0.368936 1.4:+87572101 None:intergenic
GTTGCTTATCTTGTTAGTAT+TGG 0.373295 1.4:-87571987 MS.gene90852:CDS
TTAGTATTGGTGTTAATCCT+AGG 0.373470 1.4:-87571974 MS.gene90852:CDS
GATGTAGAGAAAGATGATAT+TGG 0.374971 1.4:-87572074 MS.gene90852:CDS
TCCCCTTGCTCTTAAGCCTC+TGG 0.375995 1.4:+87571349 None:intergenic
GAAGACAATTTCGCCTTAAG+AGG 0.388607 1.4:+87571690 None:intergenic
GATTATTGGATTGCCTCTTA+AGG 0.391397 1.4:-87571703 MS.gene90852:CDS
GAGATTTGAAGAGAGATTGC+AGG 0.401297 1.4:-87571286 MS.gene90852:CDS
GTCGCAGGATGTGGCTAGTA+TGG 0.403205 1.4:-87571526 MS.gene90852:CDS
TCCTAGGGATATTGGTCCTA+TGG 0.421118 1.4:-87571958 MS.gene90852:CDS
CTCATGACTTCAACGGTTGA+AGG 0.424949 1.4:+87572329 None:intergenic
GAGAAAAGAGCTTATTTACT+TGG 0.425844 1.4:-87571825 MS.gene90852:CDS
ACCACCCTCGCAAACCCTTC+CGG 0.428125 1.4:+87571630 None:intergenic
GAATGAAGGACCTATACTTT+CGG 0.432637 1.4:+87571248 None:intergenic
TATTCAGAAATTAGGGTTAA+CGG 0.433903 1.4:-87572291 MS.gene90852:CDS
GCAATCTCTCTTCAAATCTC+TGG 0.437449 1.4:+87571289 None:intergenic
TCCGGAAGGGTTTGCGAGGG+TGG 0.445823 1.4:-87571631 MS.gene90852:CDS
GGTGTTAATCCTAGGGATAT+TGG 0.451217 1.4:-87571966 MS.gene90852:CDS
TATAGTTTCAGATGAGGAAG+AGG 0.454451 1.4:-87571190 MS.gene90852:CDS
TACTTCTTCAAAAGTGAGAT+GGG 0.459036 1.4:-87571447 MS.gene90852:CDS
GGAAGGGTTTGCGAGGGTGG+TGG 0.459551 1.4:-87571628 MS.gene90852:CDS
CGAGATGCCTACTGTTACAT+GGG 0.462699 1.4:-87572456 None:intergenic
TCCAAATCCTGCAATTCATC+AGG 0.465291 1.4:+87572356 None:intergenic
GCGAAACGAGTTTCTCTTTG+CGG 0.473966 1.4:+87572420 None:intergenic
ATCCTAGCTAGAATCTTCTT+AGG 0.491214 1.4:+87571852 None:intergenic
GGGATTTCTAGGTCTAAACT+TGG 0.492563 1.4:-87572182 MS.gene90852:CDS
GTTACATGGGGTGTCATTCA+AGG 0.496359 1.4:-87572443 MS.gene90852:CDS
TACCAGAGGCTTAAGAGCAA+GGG 0.502139 1.4:-87571351 MS.gene90852:CDS
CATCATCTTCGATTATCTCA+AGG 0.503798 1.4:-87572393 MS.gene90852:CDS
GGCAATACCGTCGCAGGATG+TGG 0.504137 1.4:-87571535 MS.gene90852:CDS
TTTGAAGCTTAAGATTGATC+CGG 0.506836 1.4:-87571649 MS.gene90852:CDS
TTACTTCTTCAAAAGTGAGA+TGG 0.508844 1.4:-87571448 MS.gene90852:CDS
GGTCCTTCATTCTGGATTGG+TGG 0.510705 1.4:-87571237 MS.gene90852:CDS
GTCCTTCATTCTGGATTGGT+GGG 0.516545 1.4:-87571236 MS.gene90852:CDS
ATAGGTCCTTCATTCTGGAT+TGG 0.517859 1.4:-87571240 MS.gene90852:CDS
TAGTATTGGTGTTAATCCTA+GGG 0.522188 1.4:-87571973 MS.gene90852:CDS
ACGAGATGCCTACTGTTACA+TGG 0.523419 1.4:-87572457 None:intergenic
ATCATCTTCGATTATCTCAA+GGG 0.534022 1.4:-87572392 MS.gene90852:CDS
ATTGTTCTGCTAAAGAGAAA+CGG 0.538058 1.4:+87571137 None:intergenic
TATATCGAAACCGAAAGTAT+AGG 0.540273 1.4:-87571258 MS.gene90852:CDS
GAGGAAGGAATGTTTGCCCT+CGG 0.544202 1.4:-87571745 MS.gene90852:CDS
AGCTTAAGATTGATCCGGAA+GGG 0.556415 1.4:-87571644 MS.gene90852:CDS
TTCCCACCAATCCAGAATGA+AGG 0.560953 1.4:+87571234 None:intergenic
AGATTTGAAGAGAGATTGCA+GGG 0.561148 1.4:-87571285 MS.gene90852:CDS
GCAAAGAGAAACTCGTTTCG+CGG 0.565498 1.4:-87572418 MS.gene90852:CDS
ATACCAGAGGCTTAAGAGCA+AGG 0.565715 1.4:-87571352 MS.gene90852:CDS
CTTCAACCGTTGAAGTCATG+AGG 0.566630 1.4:-87572328 MS.gene90852:CDS
CAAAGAGAAACTCGTTTCGC+GGG 0.570276 1.4:-87572417 MS.gene90852:CDS
GAAGATTCTAGCTAGGATGT+TGG 0.572863 1.4:-87571847 MS.gene90852:CDS
ACACTAGCATGCAAAACTTG+TGG 0.577739 1.4:+87572140 None:intergenic
TGGTAGGGCAATACCGTCGC+AGG 0.580954 1.4:-87571541 MS.gene90852:CDS
GAGACCTGTAAAAGAGCTTG+TGG 0.581965 1.4:-87571424 MS.gene90852:CDS
ACGTTCCCTCATGACTTCAA+CGG 0.586865 1.4:+87572322 None:intergenic
TAAGGATACTGTGTAACCAT+AGG 0.587849 1.4:+87571942 None:intergenic
GGTGATCAAGTGTCCTCAGT+TGG 0.594291 1.4:-87571505 MS.gene90852:CDS
ACACTACAACCCAAAATCAA+AGG 0.594517 1.4:+87572248 None:intergenic
ACCAGAGGCTTAAGAGCAAG+GGG 0.605082 1.4:-87571350 MS.gene90852:CDS
TTAACCAAGTAATCAACAAG+AGG 0.605793 1.4:+87571885 None:intergenic
TCTGAAACTATATCATTCCC+GGG 0.612098 1.4:+87571201 None:intergenic
TTGATCCGGAAGGGTTTGCG+AGG 0.614047 1.4:-87571635 MS.gene90852:CDS
GTGGGAAATTAGAGCTACCC+GGG 0.615038 1.4:-87571218 MS.gene90852:CDS
ACTCGCAGCGCAACCAACTG+AGG 0.617167 1.4:+87571492 None:intergenic
GGTGGGAAATTAGAGCTACC+CGG 0.618425 1.4:-87571219 MS.gene90852:CDS
TGCCTAAGAAGATTCTAGCT+AGG 0.620780 1.4:-87571854 MS.gene90852:CDS
AAGCTTAAGATTGATCCGGA+AGG 0.621599 1.4:-87571645 MS.gene90852:CDS
GGTGGTGGAGAAGATGCCAC+AGG 0.628330 1.4:-87571613 MS.gene90852:CDS
TTCAACCGTTGAAGTCATGA+GGG 0.641557 1.4:-87572327 MS.gene90852:CDS
ACCATAGGACCAATATCCCT+AGG 0.641670 1.4:+87571957 None:intergenic
ACTTCTTCAAAAGTGAGATG+GGG 0.645282 1.4:-87571446 MS.gene90852:CDS
ATGACACCCCATGTAACAGT+AGG 0.649004 1.4:+87572449 None:intergenic
TGATGAAGACTAACCACCTG+TGG 0.651476 1.4:+87571597 None:intergenic
TGATCCGGAAGGGTTTGCGA+GGG 0.652425 1.4:-87571634 MS.gene90852:CDS
GAATGATATAGTTTCAGATG+AGG 0.656227 1.4:-87571196 MS.gene90852:CDS
ATACTAGCCACATCCTGCGA+CGG 0.678965 1.4:+87571528 None:intergenic
GGTGGAGAAGATGCCACAGG+TGG 0.679410 1.4:-87571610 MS.gene90852:CDS
AGAGGCAATCCAATAATCTG+CGG 0.679844 1.4:+87571708 None:intergenic
GGATTAAACCTAGATACCAG+AGG 0.689589 1.4:-87571365 MS.gene90852:CDS
GGATACTGAGCAATAACCGA+GGG 0.697015 1.4:+87571729 None:intergenic
CGGATACTGAGCAATAACCG+AGG 0.701830 1.4:+87571728 None:intergenic
GAGATGCCTACTGTTACATG+GGG 0.725465 1.4:-87572455 MS.gene90852:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAGTTTATTCAGAAATTA+GGG - chr1.4:87571300-87571319 MS.gene90852:CDS 20.0%
!! TTGATTACTTGGTTAATTTA+GGG - chr1.4:87571720-87571739 MS.gene90852:CDS 20.0%
!!! AAAAATATCCTGAACTTTTA+GGG - chr1.4:87571558-87571577 MS.gene90852:CDS 20.0%
!!! TAGGGTATTTAGAAAAAATT+GGG - chr1.4:87571396-87571415 MS.gene90852:CDS 20.0%
!!! TTAGGGTATTTAGAAAAAAT+TGG - chr1.4:87571395-87571414 MS.gene90852:CDS 20.0%
! AGAATACTTCACTTATAGTT+TGG - chr1.4:87572204-87572223 MS.gene90852:CDS 25.0%
! ATGTAGAGAAAGATGATATT+GGG - chr1.4:87571525-87571544 MS.gene90852:CDS 25.0%
! CTAATCAAACAATCAACATT+AGG + chr1.4:87571824-87571843 None:intergenic 25.0%
! GTTGAGTTTATTCAGAAATT+AGG - chr1.4:87571299-87571318 MS.gene90852:CDS 25.0%
! GTTGATTACTTGGTTAATTT+AGG - chr1.4:87571719-87571738 MS.gene90852:CDS 25.0%
! TAGAAAAAATTGGGATTTCT+AGG - chr1.4:87571405-87571424 MS.gene90852:CDS 25.0%
! TATTCAGAAATTAGGGTTAA+CGG - chr1.4:87571307-87571326 MS.gene90852:CDS 25.0%
! TCAAAATGTGATTATGAAAC+CGG - chr1.4:87572021-87572040 MS.gene90852:CDS 25.0%
!! AAAAACATGATTCCTGTTTT+AGG - chr1.4:87571377-87571396 MS.gene90852:CDS 25.0%
!! AAAACATGATTCCTGTTTTA+GGG - chr1.4:87571378-87571397 MS.gene90852:CDS 25.0%
!! AAACTATAAGTGAAGTATTC+TGG + chr1.4:87572205-87572224 None:intergenic 25.0%
!! CAAAAATATCCTGAACTTTT+AGG - chr1.4:87571557-87571576 MS.gene90852:CDS 25.0%
!! TTTTCTAAATACCCTAAAAC+AGG + chr1.4:87571392-87571411 None:intergenic 25.0%
!!! AAATCAGTATCCTTTGATTT+TGG - chr1.4:87571340-87571359 MS.gene90852:CDS 25.0%
!!! AATCAGTATCCTTTGATTTT+GGG - chr1.4:87571341-87571360 MS.gene90852:CDS 25.0%
!!! ACACAGTATCCTTATTTTTT+AGG - chr1.4:87571665-87571684 MS.gene90852:CDS 25.0%
!!! CACAGTATCCTTATTTTTTA+GGG - chr1.4:87571666-87571685 MS.gene90852:CDS 25.0%
!!! GTTGATTGTTTGATTAGTTT+TGG - chr1.4:87571827-87571846 MS.gene90852:CDS 25.0%
AATTATTCCTGATGAATTGC+AGG - chr1.4:87571235-87571254 MS.gene90852:CDS 30.0%
ACTCTCATCCCTAAAAAATA+AGG + chr1.4:87571677-87571696 None:intergenic 30.0%
ATCATCTTCGATTATCTCAA+GGG - chr1.4:87571206-87571225 MS.gene90852:CDS 30.0%
CCTGTTATTAAGTTTCTTAG+AGG - chr1.4:87571497-87571516 MS.gene90852:CDS 30.0%
GAATGATATAGTTTCAGATG+AGG - chr1.4:87572402-87572421 MS.gene90852:CDS 30.0%
GAGAAAAGAGCTTATTTACT+TGG - chr1.4:87571773-87571792 MS.gene90852:CDS 30.0%
GATGTAGAGAAAGATGATAT+TGG - chr1.4:87571524-87571543 MS.gene90852:CDS 30.0%
GTTGCTTATCTTGTTAGTAT+TGG - chr1.4:87571611-87571630 MS.gene90852:CDS 30.0%
TACTTCTTCAAAAGTGAGAT+GGG - chr1.4:87572151-87572170 MS.gene90852:CDS 30.0%
TTAACCAAGTAATCAACAAG+AGG + chr1.4:87571716-87571735 None:intergenic 30.0%
TTACTTCTTCAAAAGTGAGA+TGG - chr1.4:87572150-87572169 MS.gene90852:CDS 30.0%
! ATCTGAAACTATATCATTCC+CGG + chr1.4:87572401-87572420 None:intergenic 30.0%
! CCTCTAAGAAACTTAATAAC+AGG + chr1.4:87571500-87571519 None:intergenic 30.0%
! GGATAAAGTGTTCATTGAAT+TGG - chr1.4:87572269-87572288 MS.gene90852:CDS 30.0%
! TATATCGAAACCGAAAGTAT+AGG - chr1.4:87572340-87572359 MS.gene90852:CDS 30.0%
! TCACTTATAGTTTGGAATCT+AGG - chr1.4:87572212-87572231 MS.gene90852:CDS 30.0%
! TTTGAAGCTTAAGATTGATC+CGG - chr1.4:87571949-87571968 MS.gene90852:CDS 30.0%
!! TAGTATTGGTGTTAATCCTA+GGG - chr1.4:87571625-87571644 MS.gene90852:CDS 30.0%
!! TTAGTATTGGTGTTAATCCT+AGG - chr1.4:87571624-87571643 MS.gene90852:CDS 30.0%
!!! GTTTGATTAGTTTTGGTTTG+AGG - chr1.4:87571834-87571853 MS.gene90852:CDS 30.0%
!!! TATTTTTTAGGGATGAGAGT+TGG - chr1.4:87571677-87571696 MS.gene90852:CDS 30.0%
AAAGTATAGGTCCTTCATTC+TGG - chr1.4:87572353-87572372 MS.gene90852:CDS 35.0%
ACACTACAACCCAAAATCAA+AGG + chr1.4:87571353-87571372 None:intergenic 35.0%
ACTTCTTCAAAAGTGAGATG+GGG - chr1.4:87572152-87572171 MS.gene90852:CDS 35.0%
AGATTTGAAGAGAGATTGCA+GGG - chr1.4:87572313-87572332 MS.gene90852:CDS 35.0%
AGCTTAAACCCTAAAAGTTC+AGG + chr1.4:87571569-87571588 None:intergenic 35.0%
ATCCTAGCTAGAATCTTCTT+AGG + chr1.4:87571749-87571768 None:intergenic 35.0%
CATCATCTTCGATTATCTCA+AGG - chr1.4:87571205-87571224 MS.gene90852:CDS 35.0%
CTACCAAGTAAAAACTCAAC+CGG + chr1.4:87572043-87572062 None:intergenic 35.0%
GAATGAAGGACCTATACTTT+CGG + chr1.4:87572353-87572372 None:intergenic 35.0%
GATTATTGGATTGCCTCTTA+AGG - chr1.4:87571895-87571914 MS.gene90852:CDS 35.0%
TAAGGATACTGTGTAACCAT+AGG + chr1.4:87571659-87571678 None:intergenic 35.0%
TATAGTTTCAGATGAGGAAG+AGG - chr1.4:87572408-87572427 MS.gene90852:CDS 35.0%
TTCGATTATCTCAAGGGTTT+GGG - chr1.4:87571212-87571231 MS.gene90852:CDS 35.0%
! AAACCGGTTGAGTTTTTACT+TGG - chr1.4:87572037-87572056 MS.gene90852:CDS 35.0%
! AAAGCCTCTTGTTGATTACT+TGG - chr1.4:87571709-87571728 MS.gene90852:CDS 35.0%
! GGTTGAGTTTTTACTTGGTA+GGG - chr1.4:87572042-87572061 MS.gene90852:CDS 35.0%
! TCTGAAACTATATCATTCCC+GGG + chr1.4:87572400-87572419 None:intergenic 35.0%
!!! CTTTTAGGGTTTAAGCTTGA+AGG - chr1.4:87571572-87571591 MS.gene90852:CDS 35.0%
!!! GATTAGTTTTGGTTTGAGGA+AGG - chr1.4:87571838-87571857 MS.gene90852:CDS 35.0%
AAGCTTAAGATTGATCCGGA+AGG - chr1.4:87571953-87571972 MS.gene90852:CDS 40.0%
ACACTAGCATGCAAAACTTG+TGG + chr1.4:87571461-87571480 None:intergenic 40.0%
AGAGGCAATCCAATAATCTG+CGG + chr1.4:87571893-87571912 None:intergenic 40.0%
AGCTTAAGATTGATCCGGAA+GGG - chr1.4:87571954-87571973 MS.gene90852:CDS 40.0%
ATAGGTCCTTCATTCTGGAT+TGG - chr1.4:87572358-87572377 MS.gene90852:CDS 40.0%
CTTCGATTATCTCAAGGGTT+TGG - chr1.4:87571211-87571230 MS.gene90852:CDS 40.0%
GAAGACAATTTCGCCTTAAG+AGG + chr1.4:87571911-87571930 None:intergenic 40.0%
GAGATTTGAAGAGAGATTGC+AGG - chr1.4:87572312-87572331 MS.gene90852:CDS 40.0%
GCAATCTCTCTTCAAATCTC+TGG + chr1.4:87572312-87572331 None:intergenic 40.0%
GGATTAAACCTAGATACCAG+AGG - chr1.4:87572233-87572252 MS.gene90852:CDS 40.0%
GGTGTTAATCCTAGGGATAT+TGG - chr1.4:87571632-87571651 MS.gene90852:CDS 40.0%
TCCAAATCCTGCAATTCATC+AGG + chr1.4:87571245-87571264 None:intergenic 40.0%
TCCTGATGAATTGCAGGATT+TGG - chr1.4:87571241-87571260 MS.gene90852:CDS 40.0%
TTCAACCGTTGAAGTCATGA+GGG - chr1.4:87571271-87571290 MS.gene90852:CDS 40.0%
! AACTCCACAAGCTCTTTTAC+AGG + chr1.4:87572181-87572200 None:intergenic 40.0%
! CGGTTGAGTTTTTACTTGGT+AGG - chr1.4:87572041-87572060 MS.gene90852:CDS 40.0%
! GAAGATTCTAGCTAGGATGT+TGG - chr1.4:87571751-87571770 MS.gene90852:CDS 40.0%
! GGGATTTCTAGGTCTAAACT+TGG - chr1.4:87571416-87571435 MS.gene90852:CDS 40.0%
! TGCCTAAGAAGATTCTAGCT+AGG - chr1.4:87571744-87571763 MS.gene90852:CDS 40.0%
ACCATAGGACCAATATCCCT+AGG + chr1.4:87571644-87571663 None:intergenic 45.0%
ACGTTCCCTCATGACTTCAA+CGG + chr1.4:87571279-87571298 None:intergenic 45.0%
ATACCAGAGGCTTAAGAGCA+AGG - chr1.4:87572246-87572265 MS.gene90852:CDS 45.0%
ATGACACCCCATGTAACAGT+AGG + chr1.4:87571152-87571171 None:intergenic 45.0%
CAAAGAGAAACTCGTTTCGC+GGG - chr1.4:87571181-87571200 MS.gene90852:CDS 45.0%
CTCATGACTTCAACGGTTGA+AGG + chr1.4:87571272-87571291 None:intergenic 45.0%
CTCTTAAGCCTCTGGTATCT+AGG + chr1.4:87572244-87572263 None:intergenic 45.0%
CTTCAACCGTTGAAGTCATG+AGG - chr1.4:87571270-87571289 MS.gene90852:CDS 45.0%
GAGACCTGTAAAAGAGCTTG+TGG - chr1.4:87572174-87572193 MS.gene90852:CDS 45.0%
GCAAAGAGAAACTCGTTTCG+CGG - chr1.4:87571180-87571199 MS.gene90852:CDS 45.0%
GCGAAACGAGTTTCTCTTTG+CGG + chr1.4:87571181-87571200 None:intergenic 45.0%
GCTCAGTATCCGCAGATTAT+TGG - chr1.4:87571881-87571900 MS.gene90852:CDS 45.0%
GGATACTGAGCAATAACCGA+GGG + chr1.4:87571872-87571891 None:intergenic 45.0%
TACCAGAGGCTTAAGAGCAA+GGG - chr1.4:87572247-87572266 MS.gene90852:CDS 45.0%
TCCTAGGGATATTGGTCCTA+TGG - chr1.4:87571640-87571659 MS.gene90852:CDS 45.0%
TGATGAAGACTAACCACCTG+TGG + chr1.4:87572004-87572023 None:intergenic 45.0%
TTCCCACCAATCCAGAATGA+AGG + chr1.4:87572367-87572386 None:intergenic 45.0%
!! GTCCTTCATTCTGGATTGGT+GGG - chr1.4:87572362-87572381 MS.gene90852:CDS 45.0%
!! GTTACATGGGGTGTCATTCA+AGG - chr1.4:87571155-87571174 MS.gene90852:CDS 45.0%
ACCAGAGGCTTAAGAGCAAG+GGG - chr1.4:87572248-87572267 MS.gene90852:CDS 50.0%
ATACTAGCCACATCCTGCGA+CGG + chr1.4:87572073-87572092 None:intergenic 50.0%
CGGATACTGAGCAATAACCG+AGG + chr1.4:87571873-87571892 None:intergenic 50.0%
GAGGAAGGAATGTTTGCCCT+CGG - chr1.4:87571853-87571872 MS.gene90852:CDS 50.0%
GGTGATCAAGTGTCCTCAGT+TGG - chr1.4:87572093-87572112 MS.gene90852:CDS 50.0%
GGTGGGAAATTAGAGCTACC+CGG - chr1.4:87572379-87572398 MS.gene90852:CDS 50.0%
GTGGGAAATTAGAGCTACCC+GGG - chr1.4:87572380-87572399 MS.gene90852:CDS 50.0%
! GGTCCTTCATTCTGGATTGG+TGG - chr1.4:87572361-87572380 MS.gene90852:CDS 50.0%
GTCGCAGGATGTGGCTAGTA+TGG - chr1.4:87572072-87572091 MS.gene90852:CDS 55.0%
TCCCCTTGCTCTTAAGCCTC+TGG + chr1.4:87572252-87572271 None:intergenic 55.0%
TGATCCGGAAGGGTTTGCGA+GGG - chr1.4:87571964-87571983 MS.gene90852:CDS 55.0%
TTGATCCGGAAGGGTTTGCG+AGG - chr1.4:87571963-87571982 MS.gene90852:CDS 55.0%
ACCACCCTCGCAAACCCTTC+CGG + chr1.4:87571971-87571990 None:intergenic 60.0%
ACTCGCAGCGCAACCAACTG+AGG + chr1.4:87572109-87572128 None:intergenic 60.0%
GGCAATACCGTCGCAGGATG+TGG - chr1.4:87572063-87572082 MS.gene90852:CDS 60.0%
GGTGGAGAAGATGCCACAGG+TGG - chr1.4:87571988-87572007 MS.gene90852:CDS 60.0%
TGGTAGGGCAATACCGTCGC+AGG - chr1.4:87572057-87572076 MS.gene90852:CDS 60.0%
!! GGTGGTGGAGAAGATGCCAC+AGG - chr1.4:87571985-87572004 MS.gene90852:CDS 60.0%
GGAAGGGTTTGCGAGGGTGG+TGG - chr1.4:87571970-87571989 MS.gene90852:CDS 65.0%
TCCGGAAGGGTTTGCGAGGG+TGG - chr1.4:87571967-87571986 MS.gene90852:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 87571146 87572474 87571146 ID=MS.gene90852
chr1.4 mRNA 87571146 87572474 87571146 ID=MS.gene90852.t1;Parent=MS.gene90852
chr1.4 exon 87571146 87572474 87571146 ID=MS.gene90852.t1.exon1;Parent=MS.gene90852.t1
chr1.4 CDS 87571146 87572474 87571146 ID=cds.MS.gene90852.t1;Parent=MS.gene90852.t1
Gene Sequence

>MS.gene90852

ATGCCTACTGTTACATGGGGTGTCATTCAAGGCCGCAAAGAGAAACTCGTTTCGCGGGTCATCATCTTCGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTCATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGGTTGATGATATAAATCAGTATCCTTTGATTTTGGGTTGTAGTGTTAGAAAAAACATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCTAGGTCTAAACTTGGTGAATTTATTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGACTTGATGTAGAGAAAGATGATATTGGGTTTGTGTTGCAAAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTTGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCTATGGTTACACAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTCTTGTTGATTACTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTGGTTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCCTCGGTTATTGCTCAGTATCCGCAGATTATTGGATTGCCTCTTAAGGCGAAATTGTCTTCGCAACAATATTTTTTTAGTTTGAAGCTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAAACCGGTTGAGTTTTTACTTGGTAGGGCAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAGTTGGTTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGACCTGTAAAAGAGCTTGTGGAGTTTCCAGAATACTTCACTTATAGTTTGGAATCTAGGATTAAACCTAGATACCAGAGGCTTAAGAGCAAGGGGATAAAGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCAATTATATCGAAACCGAAAGTATAGGTCCTTCATTCTGGATTGGTGGGAAATTAGAGCTACCCGGGAATGATATAGTTTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACCGTTTCTCTTTAG
Protein sequence

>MS.gene90852.t1

MPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTVDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVELMKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFWIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL