AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91365

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91365.t1 MTR_1g105860 91.698 265 22 0 1 265 18 282 0.0 513
MS.gene91365.t1 MTR_1g105860 91.698 265 22 0 1 265 1 265 0.0 512
MS.gene91365.t1 MTR_1g105855 81.387 274 41 2 1 265 18 290 1.07e-162 452
MS.gene91365.t1 MTR_1g105885 73.047 256 63 4 1 255 1 251 4.10e-135 381
MS.gene91365.t1 MTR_1g105850 62.343 239 90 0 20 258 23 261 4.06e-108 315
MS.gene91365.t1 MTR_1g021638 61.753 251 91 3 10 255 3 253 1.30e-105 309
MS.gene91365.t1 MTR_1g021632 56.923 260 107 3 10 264 3 262 7.54e-96 295
MS.gene91365.t1 MTR_1g021610 54.839 248 108 2 14 258 10 256 4.12e-93 288
MS.gene91365.t1 MTR_1g021642 55.769 260 108 4 1 254 8 266 5.50e-93 288
MS.gene91365.t1 MTR_0341s0010 54.902 255 106 5 10 255 3 257 3.94e-91 272
MS.gene91365.t1 MTR_1g021635 55.952 252 106 3 10 256 3 254 9.38e-91 282
MS.gene91365.t1 MTR_1g021630 54.902 255 106 5 10 255 3 257 3.22e-87 273
MS.gene91365.t1 MTR_1g105820 50.980 255 113 6 4 256 8 252 1.13e-78 250
MS.gene91365.t1 MTR_1g105755 48.235 255 121 5 2 256 6 249 6.27e-72 231
MS.gene91365.t1 MTR_5g068260 48.780 246 118 5 10 255 8 245 5.05e-69 225
MS.gene91365.t1 MTR_5g068250 50.909 220 104 3 40 259 39 254 9.65e-66 214
MS.gene91365.t1 MTR_1g105750 48.828 256 122 5 2 256 6 253 5.26e-63 209
MS.gene91365.t1 MTR_5g068190 45.669 254 115 7 10 254 8 247 2.01e-61 205
MS.gene91365.t1 MTR_1g105800 47.718 241 117 5 16 256 19 250 7.40e-61 203
MS.gene91365.t1 MTR_0341s0020 45.098 255 100 6 10 255 3 226 6.95e-59 198
MS.gene91365.t1 MTR_1g105840 40.873 252 140 4 11 262 4 246 1.58e-51 179
MS.gene91365.t1 MTR_5g065130 40.304 263 138 7 4 262 1 248 7.06e-51 176
MS.gene91365.t1 MTR_1g105710 43.256 215 107 8 43 248 33 241 4.59e-43 155
MS.gene91365.t1 MTR_1g105700 37.917 240 135 6 24 255 19 252 1.12e-41 151
MS.gene91365.t1 MTR_1g105830 35.686 255 131 7 12 263 35 259 2.85e-40 141
MS.gene91365.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 2.24e-34 126
MS.gene91365.t1 MTR_2g088980 31.452 248 158 7 4 248 1 239 2.45e-34 124
MS.gene91365.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 2.85e-33 125
MS.gene91365.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 1.88e-32 125
MS.gene91365.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 2.20e-32 125
MS.gene91365.t1 MTR_1g105640 34.562 217 133 7 44 255 41 253 8.90e-32 123
MS.gene91365.t1 MTR_1g105640 34.562 217 133 7 44 255 41 253 8.98e-32 123
MS.gene91365.t1 MTR_1g105640 34.562 217 133 7 44 255 41 253 1.02e-31 123
MS.gene91365.t1 MTR_5g068290 47.619 126 63 3 130 255 1 123 1.97e-30 117
MS.gene91365.t1 MTR_7g052020 29.839 248 165 5 9 256 1 239 2.47e-30 114
MS.gene91365.t1 MTR_6g463830 33.730 252 153 8 11 255 7 251 3.57e-30 119
MS.gene91365.t1 MTR_6g463830 34.184 196 113 8 68 254 301 489 9.57e-18 83.2
MS.gene91365.t1 MTR_6g463660 32.046 259 162 7 9 261 7 257 5.22e-29 115
MS.gene91365.t1 MTR_6g463660 28.992 238 150 10 21 254 268 490 2.58e-18 84.3
MS.gene91365.t1 MTR_6g057680 32.046 259 162 7 9 261 7 257 5.22e-29 115
MS.gene91365.t1 MTR_6g057680 28.992 238 150 10 21 254 268 490 2.58e-18 84.3
MS.gene91365.t1 MTR_6g055960 31.776 214 137 5 47 255 35 244 2.62e-28 114
MS.gene91365.t1 MTR_6g055960 30.864 243 142 11 23 254 256 483 3.13e-19 87.4
MS.gene91365.t1 MTR_5g005480 32.114 246 155 8 13 254 12 249 2.83e-28 113
MS.gene91365.t1 MTR_1g105655 32.735 223 139 7 40 258 42 257 9.51e-27 109
MS.gene91365.t1 MTR_6g463400 30.303 264 173 6 1 261 1 256 1.86e-26 107
MS.gene91365.t1 MTR_6g463400 35.714 168 101 6 89 254 328 490 8.17e-23 97.4
MS.gene91365.t1 MTR_8g028065 29.455 275 161 8 9 263 7 268 7.61e-26 106
MS.gene91365.t1 MTR_8g028065 26.953 256 157 12 23 265 261 499 1.33e-17 82.8
MS.gene91365.t1 MTR_0007s0020 31.203 266 155 10 4 255 1 252 9.45e-26 106
MS.gene91365.t1 MTR_0007s0020 32.990 194 117 7 74 259 309 497 6.41e-20 89.4
MS.gene91365.t1 MTR_1g105650 29.870 231 152 5 28 255 31 254 1.98e-25 105
MS.gene91365.t1 MTR_1g105585 32.271 251 156 9 4 248 6 248 3.95e-25 104
MS.gene91365.t1 MTR_2g088930 29.796 245 154 8 6 248 11 239 8.25e-25 99.4
MS.gene91365.t1 MTR_6g057750 29.317 249 167 6 9 254 10 252 9.88e-25 103
MS.gene91365.t1 MTR_6g057750 29.070 172 111 6 89 255 337 502 1.09e-16 80.1
MS.gene91365.t1 MTR_6g463700 29.317 249 167 6 9 254 10 252 1.05e-24 103
MS.gene91365.t1 MTR_5g005530 33.880 183 116 3 72 254 70 247 1.43e-24 102
MS.gene91365.t1 MTR_5g005450 31.193 218 129 9 45 254 41 245 4.03e-24 101
MS.gene91365.t1 MTR_3g011890 28.182 220 144 6 50 265 46 255 4.37e-24 97.8
MS.gene91365.t1 MTR_1g105595 32.536 209 131 7 51 255 52 254 9.30e-24 100
MS.gene91365.t1 MTR_1g105595 32.536 209 131 7 51 255 52 254 1.05e-23 100
MS.gene91365.t1 MTR_6g053000 32.932 249 150 11 11 254 7 243 2.08e-23 99.8
MS.gene91365.t1 MTR_6g463710 31.797 217 139 5 44 255 40 252 2.10e-23 99.8
MS.gene91365.t1 MTR_6g463710 33.889 180 112 6 82 259 322 496 6.41e-18 83.6
MS.gene91365.t1 MTR_6g057770 31.797 217 139 5 44 255 40 252 2.10e-23 99.8
MS.gene91365.t1 MTR_6g057770 33.889 180 112 6 82 259 322 496 6.65e-18 83.6
MS.gene91365.t1 MTR_1g105615 30.435 253 158 9 11 255 11 253 2.31e-23 99.0
MS.gene91365.t1 MTR_5g005520 31.019 216 138 7 45 254 36 246 2.47e-23 99.4
MS.gene91365.t1 MTR_1g105725 27.626 257 162 10 9 254 24 267 3.30e-23 99.0
MS.gene91365.t1 MTR_5g005520 31.019 216 138 7 45 254 41 251 3.48e-23 99.0
MS.gene91365.t1 MTR_3g011910 32.389 247 147 8 9 249 22 254 2.30e-22 96.3
MS.gene91365.t1 MTR_3g011910 35.165 182 109 5 71 249 53 228 1.32e-21 94.4
MS.gene91365.t1 MTR_8g041650 27.027 259 178 7 9 264 8 258 3.92e-21 92.8
MS.gene91365.t1 MTR_0074s0060 28.794 257 137 9 12 254 7 231 6.01e-20 89.4
MS.gene91365.t1 MTR_8g041880 29.885 261 157 13 9 259 8 252 6.40e-20 89.4
MS.gene91365.t1 MTR_8g041910 27.407 270 167 12 9 265 13 266 1.00e-19 89.0
MS.gene91365.t1 MTR_8g041710 26.154 260 176 8 9 265 7 253 2.43e-19 87.8
MS.gene91365.t1 MTR_8g041870 28.947 190 123 7 80 265 77 258 2.16e-17 81.6
MS.gene91365.t1 MTR_3g079850 29.384 211 124 7 68 259 63 267 6.13e-17 80.5
MS.gene91365.t1 MTR_3g079850 29.384 211 124 7 68 259 63 267 6.31e-17 80.5
MS.gene91365.t1 MTR_1g105600 34.254 181 107 7 82 254 333 509 7.07e-17 80.5
MS.gene91365.t1 MTR_1g105600 26.667 255 171 7 11 256 19 266 1.88e-12 67.4
MS.gene91365.t1 MTR_8g041690 31.694 183 114 6 75 255 73 246 7.23e-17 80.5
MS.gene91365.t1 MTR_2g010730 25.941 239 165 7 25 262 27 254 2.84e-16 77.0
MS.gene91365.t1 MTR_2g010710 27.197 239 157 7 25 262 27 249 2.89e-16 76.6
MS.gene91365.t1 MTR_1g105715 53.448 58 27 0 65 122 4 61 6.27e-15 68.9
MS.gene91365.t1 MTR_0264s0030 32.984 191 95 9 81 254 70 244 8.04e-15 73.6
MS.gene91365.t1 MTR_6g057440 32.877 146 87 5 12 152 8 147 7.55e-13 65.1
MS.gene91365.t1 MTR_8g041890 23.938 259 187 6 9 265 8 258 2.18e-12 67.0
MS.gene91365.t1 MTR_8g041660 24.786 234 150 9 32 255 30 247 4.55e-12 66.2
MS.gene91365.t1 MTR_8g041660 24.786 234 150 9 32 255 30 247 4.62e-12 65.9
MS.gene91365.t1 MTR_2g010720 25.837 209 143 5 55 262 115 312 2.83e-11 63.2
MS.gene91365.t1 MTR_1g105720 48.387 62 31 1 59 119 2 63 7.10e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91365.t1 AT4G21410 36.719 256 152 6 13 265 13 261 2.39e-42 151
MS.gene91365.t1 AT4G21410 36.719 256 152 6 13 265 13 261 9.18e-42 152
MS.gene91365.t1 AT4G38830 37.273 220 132 5 39 256 32 247 5.41e-37 138
MS.gene91365.t1 AT4G05200 36.145 249 139 9 11 254 33 266 1.57e-36 137
MS.gene91365.t1 AT4G05200 36.145 249 139 9 11 254 15 248 1.79e-36 137
MS.gene91365.t1 AT4G21400 34.667 225 142 4 43 265 42 263 7.80e-36 134
MS.gene91365.t1 AT4G21400 34.667 225 142 4 43 265 42 263 9.05e-36 134
MS.gene91365.t1 AT4G21400 34.667 225 142 4 43 265 42 263 9.05e-36 134
MS.gene91365.t1 AT4G21400 34.667 225 142 4 43 265 42 263 9.05e-36 134
MS.gene91365.t1 AT4G21400 33.071 254 163 5 14 265 15 263 2.00e-35 134
MS.gene91365.t1 AT4G21400 34.667 225 142 4 43 265 42 263 2.17e-35 134
MS.gene91365.t1 AT3G22060 32.500 240 154 5 9 248 13 244 3.34e-35 127
MS.gene91365.t1 AT4G00970 39.320 206 113 6 53 254 65 262 1.33e-32 125
MS.gene91365.t1 AT4G00970 39.320 206 113 6 53 254 65 262 2.66e-32 125
MS.gene91365.t1 AT4G21400 35.829 187 116 3 80 265 54 237 1.15e-31 123
MS.gene91365.t1 AT4G23170 38.249 217 117 9 45 254 39 245 1.86e-31 117
MS.gene91365.t1 AT4G21230 35.897 234 125 9 41 263 37 256 1.88e-31 122
MS.gene91365.t1 AT4G23220 32.212 208 139 2 43 248 29 236 1.18e-30 120
MS.gene91365.t1 AT4G23180 36.752 234 132 9 29 258 36 257 2.33e-30 119
MS.gene91365.t1 AT4G23180 36.752 234 132 9 29 258 36 257 4.00e-30 118
MS.gene91365.t1 AT4G23180 36.752 234 132 9 29 258 36 257 4.65e-30 119
MS.gene91365.t1 AT4G23280 37.383 214 122 6 44 254 38 242 7.93e-30 118
MS.gene91365.t1 AT4G23280 37.383 214 122 6 44 254 38 242 8.59e-30 117
MS.gene91365.t1 AT4G23280 37.383 214 122 6 44 254 38 242 9.21e-30 117
MS.gene91365.t1 AT4G23160 36.771 223 128 7 41 258 632 846 1.43e-29 117
MS.gene91365.t1 AT4G23160 36.771 223 128 7 41 258 632 846 1.43e-29 117
MS.gene91365.t1 AT4G23160 36.771 223 128 7 41 258 52 266 1.60e-29 117
MS.gene91365.t1 AT4G23130 35.577 208 123 7 51 255 46 245 6.84e-29 115
MS.gene91365.t1 AT4G23150 34.728 239 143 7 24 258 20 249 7.89e-29 115
MS.gene91365.t1 AT4G23130 35.577 208 123 7 51 255 46 245 9.20e-29 115
MS.gene91365.t1 AT4G23130 35.577 208 123 7 51 255 46 245 9.27e-29 115
MS.gene91365.t1 AT4G23210 32.889 225 128 6 40 248 29 246 2.20e-28 113
MS.gene91365.t1 AT4G23210 32.889 225 128 6 40 248 29 246 2.20e-28 113
MS.gene91365.t1 AT4G23210 32.889 225 128 6 40 248 29 246 2.68e-28 114
MS.gene91365.t1 AT4G23210 32.889 225 128 6 40 248 29 246 2.82e-28 113
MS.gene91365.t1 AT4G23210 32.889 225 128 6 40 248 29 246 2.93e-28 113
MS.gene91365.t1 AT4G23300 33.036 224 127 6 41 248 30 246 4.33e-28 113
MS.gene91365.t1 AT2G31620 30.942 223 141 6 40 256 40 255 4.59e-28 108
MS.gene91365.t1 AT4G23200 29.524 210 142 2 45 248 30 239 8.26e-28 111
MS.gene91365.t1 AT4G23200 29.524 210 142 2 45 248 30 239 1.21e-27 112
MS.gene91365.t1 AT4G23140 35.176 199 115 6 65 258 61 250 1.20e-26 108
MS.gene91365.t1 AT4G23140 35.176 199 115 6 65 258 61 250 1.40e-26 108
MS.gene91365.t1 AT4G11521 28.889 225 147 3 32 248 18 237 7.40e-26 102
MS.gene91365.t1 AT4G11460 31.193 218 135 5 43 248 32 246 5.35e-25 104
MS.gene91365.t1 AT4G11460 31.193 218 135 5 43 248 32 246 5.36e-25 104
MS.gene91365.t1 AT4G11530 26.506 249 163 4 9 248 5 242 7.28e-25 103
MS.gene91365.t1 AT3G45860 37.186 199 109 7 65 258 64 251 7.56e-25 103
MS.gene91365.t1 AT4G23230 32.195 205 132 4 51 254 43 241 3.41e-24 102
MS.gene91365.t1 AT5G41290 29.150 247 156 8 12 249 7 243 3.53e-24 98.6
MS.gene91365.t1 AT4G23190 31.250 224 133 6 39 248 28 244 6.96e-24 100
MS.gene91365.t1 AT4G23190 31.250 224 133 6 39 248 28 244 7.83e-24 100
MS.gene91365.t1 AT4G23270 32.540 252 152 10 7 254 3 240 1.19e-23 100
MS.gene91365.t1 AT4G23270 32.540 252 152 10 7 254 3 240 1.19e-23 100
MS.gene91365.t1 AT4G23270 32.540 252 152 10 7 254 3 240 1.28e-23 100
MS.gene91365.t1 AT4G20640 28.112 249 168 5 5 248 7 249 1.30e-23 96.7
MS.gene91365.t1 AT4G20580 28.112 249 168 5 5 248 7 249 1.30e-23 96.7
MS.gene91365.t1 AT4G20610 28.112 249 168 5 5 248 7 249 1.30e-23 96.7
MS.gene91365.t1 AT4G20630 28.112 249 168 5 5 248 7 249 1.30e-23 96.7
MS.gene91365.t1 AT4G20620 28.112 249 168 5 5 248 7 249 1.30e-23 96.7
MS.gene91365.t1 AT4G20590 28.112 249 168 5 5 248 7 249 1.30e-23 96.7
MS.gene91365.t1 AT4G20600 28.112 249 168 5 5 248 7 249 1.30e-23 96.7
MS.gene91365.t1 AT3G21960 27.490 251 171 6 3 248 11 255 1.49e-23 96.7
MS.gene91365.t1 AT4G20570 28.112 249 168 5 5 248 21 263 1.62e-23 96.7
MS.gene91365.t1 AT4G20560 28.112 249 168 5 5 248 21 263 1.62e-23 96.7
MS.gene91365.t1 AT4G20645 28.112 249 168 5 5 248 21 263 1.62e-23 96.7
MS.gene91365.t1 AT4G20550 28.112 249 168 5 5 248 21 263 1.62e-23 96.7
MS.gene91365.t1 AT4G20530 28.112 249 168 5 5 248 21 263 1.62e-23 96.7
MS.gene91365.t1 AT4G20540 28.112 249 168 5 5 248 21 263 1.62e-23 96.7
MS.gene91365.t1 AT4G20670 28.112 249 168 5 5 248 7 249 1.81e-23 96.3
MS.gene91365.t1 AT4G23250 28.692 237 141 7 36 254 30 256 5.98e-23 98.2
MS.gene91365.t1 AT4G23250 28.692 237 141 7 36 254 30 256 6.34e-23 98.2
MS.gene91365.t1 AT4G23250 28.692 237 141 7 36 254 30 256 6.90e-23 98.2
MS.gene91365.t1 AT4G23250 27.358 212 129 5 43 254 733 919 1.34e-13 70.9
MS.gene91365.t1 AT3G58310 26.556 241 171 4 9 248 14 249 8.15e-23 94.4
MS.gene91365.t1 AT3G21990 27.309 249 170 5 5 248 7 249 1.11e-22 94.0
MS.gene91365.t1 AT1G61750 30.660 212 139 6 43 251 38 244 3.29e-22 94.4
MS.gene91365.t1 AT4G23240 29.630 216 145 4 43 254 33 245 4.62e-22 95.5
MS.gene91365.t1 AT4G21410 40.580 138 78 3 130 265 1 136 5.81e-22 95.1
MS.gene91365.t1 AT4G11490 29.493 217 145 3 38 248 27 241 2.90e-21 93.2
MS.gene91365.t1 AT3G21910 28.634 227 148 7 42 258 48 270 9.81e-21 89.4
MS.gene91365.t1 AT4G23310 32.512 203 124 6 50 248 157 350 1.21e-20 91.7
MS.gene91365.t1 AT4G23310 32.512 203 124 6 50 248 157 350 1.31e-20 91.7
MS.gene91365.t1 AT5G48540 29.600 250 155 8 13 256 9 243 1.69e-20 88.2
MS.gene91365.t1 AT4G23260 28.636 220 149 5 36 249 30 247 4.31e-20 89.7
MS.gene91365.t1 AT4G21400 37.226 137 84 2 130 265 1 136 4.39e-20 89.7
MS.gene91365.t1 AT3G21920 30.204 245 141 11 32 258 40 272 4.74e-20 87.4
MS.gene91365.t1 AT4G23260 28.636 220 149 5 36 249 30 247 5.14e-20 89.7
MS.gene91365.t1 AT3G21920 30.204 245 141 11 32 258 62 294 5.26e-20 87.8
MS.gene91365.t1 AT4G04500 31.250 208 128 5 61 255 49 254 1.06e-19 88.6
MS.gene91365.t1 AT4G04500 31.250 208 128 5 61 255 49 254 1.06e-19 88.6
MS.gene91365.t1 AT4G04500 31.250 208 128 5 61 255 49 254 1.16e-19 88.6
MS.gene91365.t1 AT1G63550 28.972 214 145 4 40 250 37 246 1.18e-19 87.0
MS.gene91365.t1 AT1G63600 28.054 221 149 4 35 250 39 254 1.19e-19 87.0
MS.gene91365.t1 AT3G21930 29.796 245 142 11 32 258 40 272 1.63e-19 85.9
MS.gene91365.t1 AT1G63580 29.469 207 139 5 49 250 35 239 2.64e-19 85.1
MS.gene91365.t1 AT3G22040 27.907 258 159 9 4 248 7 250 3.21e-19 84.7
MS.gene91365.t1 AT1G63570 26.800 250 168 5 3 249 4 241 2.49e-18 82.8
MS.gene91365.t1 AT1G63570 26.800 250 168 5 3 249 4 241 2.49e-18 82.8
MS.gene91365.t1 AT5G41300 27.126 247 167 6 6 247 7 245 3.14e-18 82.4
MS.gene91365.t1 AT1G63570 26.800 250 168 5 3 249 57 294 3.34e-18 83.2
MS.gene91365.t1 AT4G11470 26.168 214 143 6 51 254 43 251 5.07e-18 84.0
MS.gene91365.t1 AT4G11470 26.168 214 143 6 51 254 38 246 5.51e-18 83.6
MS.gene91365.t1 AT4G11480 24.257 202 150 3 50 250 37 236 9.16e-18 82.8
MS.gene91365.t1 AT4G11480 24.257 202 150 3 50 250 37 236 9.81e-18 83.2
MS.gene91365.t1 AT4G11480 24.257 202 150 3 50 250 37 236 1.10e-17 82.8
MS.gene91365.t1 AT4G11480 24.257 202 150 3 50 250 37 236 1.20e-17 82.8
MS.gene91365.t1 AT4G11460 31.034 174 105 5 87 248 1 171 1.75e-17 82.4
MS.gene91365.t1 AT3G29050 27.372 274 175 9 4 258 10 278 1.87e-17 80.5
MS.gene91365.t1 AT4G23190 30.636 173 100 5 89 248 1 166 7.92e-17 80.1
MS.gene91365.t1 AT4G23190 30.636 173 100 5 89 248 1 166 7.92e-17 80.1
MS.gene91365.t1 AT5G41280 27.530 247 161 7 12 249 7 244 8.27e-17 78.6
MS.gene91365.t1 AT3G21940 27.636 275 166 10 2 255 12 274 1.54e-16 77.8
MS.gene91365.t1 AT3G21940 30.556 180 106 4 92 255 3 179 1.60e-16 75.9
MS.gene91365.t1 AT3G22010 27.928 222 132 9 42 248 48 256 8.91e-16 75.5
MS.gene91365.t1 AT4G20680 28.342 187 123 5 71 248 76 260 4.08e-15 73.6
MS.gene91365.t1 AT4G23290 28.986 207 133 7 51 248 41 242 6.66e-15 74.7
MS.gene91365.t1 AT3G21900 25.481 208 146 4 41 248 45 243 1.15e-14 72.0
MS.gene91365.t1 AT3G22050 26.941 219 134 6 43 248 46 251 1.83e-14 71.6
MS.gene91365.t1 AT4G04570 27.179 195 132 4 68 254 59 251 2.31e-14 73.2
MS.gene91365.t1 AT4G04570 27.179 195 132 4 68 254 59 251 2.53e-14 72.8
MS.gene91365.t1 AT1G63590 25.000 192 123 4 71 250 64 246 1.00e-13 69.7
MS.gene91365.t1 AT3G22000 25.498 251 172 8 8 248 15 260 1.36e-13 69.3
MS.gene91365.t1 AT4G04510 28.283 198 119 6 71 254 62 250 2.65e-13 69.7
MS.gene91365.t1 AT4G04510 28.283 198 119 6 71 254 60 248 2.87e-13 69.7
MS.gene91365.t1 AT1G70690 26.829 205 126 7 49 248 48 233 5.15e-13 68.2
MS.gene91365.t1 AT3G21970 26.786 224 144 7 39 248 40 257 1.76e-12 66.2
MS.gene91365.t1 AT4G04490 26.126 222 131 7 50 253 40 246 2.64e-12 67.0
MS.gene91365.t1 AT4G04540 23.111 225 158 6 43 254 32 254 2.72e-12 67.0
MS.gene91365.t1 AT4G04540 23.111 225 158 6 43 254 32 254 3.59e-12 66.6
MS.gene91365.t1 AT4G04540 23.111 225 158 6 43 254 32 254 3.73e-12 66.2
MS.gene91365.t1 AT4G04540 23.111 225 158 6 43 254 32 254 3.76e-12 66.2
MS.gene91365.t1 AT2G01660 24.206 252 153 11 10 249 6 231 7.74e-12 64.3
MS.gene91365.t1 AT2G01660 24.400 250 151 11 10 247 6 229 1.04e-11 64.3
MS.gene91365.t1 AT2G01660 24.400 250 151 11 10 247 6 229 1.12e-11 63.9
MS.gene91365.t1 AT3G21900 24.038 208 141 4 41 248 45 235 2.88e-11 62.4

Find 49 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTAGGCCTAAACGAAAT+TGG 0.229067 1.3:+72361472 MS.gene91365:CDS
TATTCAGACCGTTCTATATT+AGG 0.252445 1.3:+72361457 MS.gene91365:CDS
AGTTACCTCTATCGTTATTT+TGG 0.283454 1.3:-72361171 None:intergenic
GGCAGATCAATTTAATATCT+TGG 0.285791 1.3:+72361534 MS.gene91365:CDS
CGTTTACTTTGTCATTGTTT+TGG 0.299429 1.3:-72361294 None:intergenic
CTATCAACCTAAAGCAAAAC+TGG 0.325641 1.3:+72361819 MS.gene91365:CDS
TTTCAAGATGTTGTAGCAAT+AGG 0.335675 1.3:+72361737 MS.gene91365:CDS
TTGCTTTAGGTTGATAGAAT+TGG 0.343077 1.3:-72361813 None:intergenic
TTAAGAAGCAAGGCTATAAA+TGG 0.352413 1.3:+72361577 MS.gene91365:CDS
TTGGTCGTTGTTGTCTGCTT+GGG 0.365814 1.3:-72361128 None:intergenic
AAGCAGGTCCAATTTCGTTT+AGG 0.394951 1.3:-72361480 None:intergenic
AGTAGTAATCAAATAATATA+TGG 0.412356 1.3:+72361643 MS.gene91365:CDS
TTAGACCAAGCTGTAATTTG+AGG 0.412757 1.3:+72361776 MS.gene91365:CDS
TTTGGTCGTTGTTGTCTGCT+TGG 0.426348 1.3:-72361129 None:intergenic
GATAATTATGAGAAAGAGAA+AGG 0.435798 1.3:-72361089 None:intergenic
CAGTGTACACCTGACTTGTC+TGG 0.440744 1.3:+72361673 MS.gene91365:CDS
TGCTTGTGTGAGATTGAATC+TGG 0.442950 1.3:-72361377 None:intergenic
AATGACAAAGTAAACGTCAT+TGG 0.446473 1.3:+72361301 MS.gene91365:CDS
AGGCATTTGCGACAATCATC+AGG 0.449621 1.3:-72361346 None:intergenic
TCACATCGTAAGTATGTTGT+AGG 0.450527 1.3:+72361604 MS.gene91365:CDS
TGCGACCAAAATAACGATAG+AGG 0.460057 1.3:+72361166 MS.gene91365:CDS
CTTGGGGTTTAGATGTGAAA+AGG 0.460200 1.3:-72361111 None:intergenic
TATATTATTTGATTACTACT+AGG 0.467816 1.3:-72361640 None:intergenic
GATAGAGGTAACTACATAAC+CGG 0.483653 1.3:+72361181 MS.gene91365:CDS
TGAGAAAGAGAAAGGAGAGT+GGG 0.486566 1.3:-72361081 None:intergenic
GTTGAATGATTTAAGAAGCA+AGG 0.524724 1.3:+72361567 MS.gene91365:CDS
TCAAACCTCAAATTACAGCT+TGG 0.526400 1.3:-72361781 None:intergenic
AGATGTTGTAGCAATAGGAT+TGG 0.527777 1.3:+72361742 MS.gene91365:CDS
CACTGGGGACCAGACAAGTC+AGG 0.531473 1.3:-72361682 None:intergenic
GTATGTTGTAGGAACAATGC+CGG 0.534380 1.3:+72361615 MS.gene91365:CDS
GATTGTCGCAAATGCCTAGT+TGG 0.540455 1.3:+72361352 MS.gene91365:CDS
ATGAGAAAGAGAAAGGAGAG+TGG 0.541993 1.3:-72361082 None:intergenic
GCTGTTGTGGTAGGTATCAC+CGG 0.542628 1.3:-72361200 None:intergenic
GAGCAATTCTGAGGCTGTTG+TGG 0.544607 1.3:-72361213 None:intergenic
AAGTTCCATGCAAAATAAGC+AGG 0.549615 1.3:-72361496 None:intergenic
CGTTTAGGCCTAATATAGAA+CGG 0.560797 1.3:-72361465 None:intergenic
GAACTTGAACAATGCAACAA+TGG 0.575248 1.3:+72361513 MS.gene91365:CDS
GATTGAATCTGGAACCAACT+AGG 0.575788 1.3:-72361366 None:intergenic
TGGTCGTTGTTGTCTGCTTG+GGG 0.575882 1.3:-72361127 None:intergenic
AATTCTGAGGCTGTTGTGGT+AGG 0.584609 1.3:-72361209 None:intergenic
AAGCAAACAATCATCACACT+GGG 0.585932 1.3:-72361698 None:intergenic
GAAGCAAACAATCATCACAC+TGG 0.591047 1.3:-72361699 None:intergenic
TATGTTGTAGGAACAATGCC+GGG 0.598716 1.3:+72361616 MS.gene91365:CDS
GGTTTCTACAACACCAACAA+TGG 0.608559 1.3:+72361271 MS.gene91365:CDS
AACGTCATTGGAATATGTAG+AGG 0.614721 1.3:+72361313 MS.gene91365:CDS
ATTTGATTACTACTAGGACC+CGG 0.639406 1.3:-72361634 None:intergenic
AGAAGCAATTGGATGGTACG+AGG 0.670531 1.3:+72361414 MS.gene91365:CDS
GGGAGATAAGAGCAATTCTG+AGG 0.672639 1.3:-72361222 None:intergenic
AGCAAACAATCATCACACTG+GGG 0.800516 1.3:-72361697 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAGTAATCAAATAATATA+TGG + chr1.3:72361643-72361662 MS.gene91365:CDS 15.0%
!! TATATTATTTGATTACTACT+AGG - chr1.3:72361643-72361662 None:intergenic 15.0%
! ATAAAAAAGAAGCAATTGGA+TGG + chr1.3:72361407-72361426 MS.gene91365:CDS 25.0%
! CCAAATAAAAAAGAAGCAAT+TGG + chr1.3:72361403-72361422 MS.gene91365:CDS 25.0%
! GATAATTATGAGAAAGAGAA+AGG - chr1.3:72361092-72361111 None:intergenic 25.0%
! TACAACTCAAAAATTGACTA+CGG + chr1.3:72361250-72361269 MS.gene91365:CDS 25.0%
!!! AATTTTTGAGTTGTAAGTGA+GGG - chr1.3:72361245-72361264 None:intergenic 25.0%
!!! CCAATTGCTTCTTTTTTATT+TGG - chr1.3:72361406-72361425 None:intergenic 25.0%
AATGACAAAGTAAACGTCAT+TGG + chr1.3:72361301-72361320 MS.gene91365:CDS 30.0%
ATATTAGGCCTAAACGAAAT+TGG + chr1.3:72361472-72361491 MS.gene91365:CDS 30.0%
GGCAGATCAATTTAATATCT+TGG + chr1.3:72361534-72361553 MS.gene91365:CDS 30.0%
GTTGAATGATTTAAGAAGCA+AGG + chr1.3:72361567-72361586 MS.gene91365:CDS 30.0%
TATTCAGACCGTTCTATATT+AGG + chr1.3:72361457-72361476 MS.gene91365:CDS 30.0%
TTAAGAAGCAAGGCTATAAA+TGG + chr1.3:72361577-72361596 MS.gene91365:CDS 30.0%
TTTCAAGATGTTGTAGCAAT+AGG + chr1.3:72361737-72361756 MS.gene91365:CDS 30.0%
! AGTTACCTCTATCGTTATTT+TGG - chr1.3:72361174-72361193 None:intergenic 30.0%
! CGTTTACTTTGTCATTGTTT+TGG - chr1.3:72361297-72361316 None:intergenic 30.0%
!! TTGCTTTAGGTTGATAGAAT+TGG - chr1.3:72361816-72361835 None:intergenic 30.0%
!!! CAATTTTTGAGTTGTAAGTG+AGG - chr1.3:72361246-72361265 None:intergenic 30.0%
AACGTCATTGGAATATGTAG+AGG + chr1.3:72361313-72361332 MS.gene91365:CDS 35.0%
AAGCAAACAATCATCACACT+GGG - chr1.3:72361701-72361720 None:intergenic 35.0%
AAGTTCCATGCAAAATAAGC+AGG - chr1.3:72361499-72361518 None:intergenic 35.0%
AGATGTTGTAGCAATAGGAT+TGG + chr1.3:72361742-72361761 MS.gene91365:CDS 35.0%
ATTTGATTACTACTAGGACC+CGG - chr1.3:72361637-72361656 None:intergenic 35.0%
CGTTTAGGCCTAATATAGAA+CGG - chr1.3:72361468-72361487 None:intergenic 35.0%
CTATCAACCTAAAGCAAAAC+TGG + chr1.3:72361819-72361838 MS.gene91365:CDS 35.0%
GAACTTGAACAATGCAACAA+TGG + chr1.3:72361513-72361532 MS.gene91365:CDS 35.0%
GATAGAGGTAACTACATAAC+CGG + chr1.3:72361181-72361200 MS.gene91365:CDS 35.0%
TCAAACCTCAAATTACAGCT+TGG - chr1.3:72361784-72361803 None:intergenic 35.0%
TCACATCGTAAGTATGTTGT+AGG + chr1.3:72361604-72361623 MS.gene91365:CDS 35.0%
TTAGACCAAGCTGTAATTTG+AGG + chr1.3:72361776-72361795 MS.gene91365:CDS 35.0%
!! CGCAAAAGTAGTGGAATTTT+TGG - chr1.3:72361150-72361169 None:intergenic 35.0%
!!! TATTTTGGTCGCAAAAGTAG+TGG - chr1.3:72361159-72361178 None:intergenic 35.0%
AAGCAGGTCCAATTTCGTTT+AGG - chr1.3:72361483-72361502 None:intergenic 40.0%
AGCAAACAATCATCACACTG+GGG - chr1.3:72361700-72361719 None:intergenic 40.0%
ATGAGAAAGAGAAAGGAGAG+TGG - chr1.3:72361085-72361104 None:intergenic 40.0%
CTTGGGGTTTAGATGTGAAA+AGG - chr1.3:72361114-72361133 None:intergenic 40.0%
GAAGCAAACAATCATCACAC+TGG - chr1.3:72361702-72361721 None:intergenic 40.0%
GGTTTCTACAACACCAACAA+TGG + chr1.3:72361271-72361290 MS.gene91365:CDS 40.0%
GTATGTTGTAGGAACAATGC+CGG + chr1.3:72361615-72361634 MS.gene91365:CDS 40.0%
TATGTTGTAGGAACAATGCC+GGG + chr1.3:72361616-72361635 MS.gene91365:CDS 40.0%
TGAGAAAGAGAAAGGAGAGT+GGG - chr1.3:72361084-72361103 None:intergenic 40.0%
TGCGACCAAAATAACGATAG+AGG + chr1.3:72361166-72361185 MS.gene91365:CDS 40.0%
TGCTTGTGTGAGATTGAATC+TGG - chr1.3:72361380-72361399 None:intergenic 40.0%
! GATTGAATCTGGAACCAACT+AGG - chr1.3:72361369-72361388 None:intergenic 40.0%
! TGTGAAGCCAGTTTTGCTTT+AGG - chr1.3:72361829-72361848 None:intergenic 40.0%
!!! GTCATTGTTTTGGCCATTGT+TGG - chr1.3:72361287-72361306 None:intergenic 40.0%
!!! TTGGACCTGCTTATTTTGCA+TGG + chr1.3:72361491-72361510 MS.gene91365:CDS 40.0%
AGAAGCAATTGGATGGTACG+AGG + chr1.3:72361414-72361433 MS.gene91365:CDS 45.0%
AGGCATTTGCGACAATCATC+AGG - chr1.3:72361349-72361368 None:intergenic 45.0%
GATTGTCGCAAATGCCTAGT+TGG + chr1.3:72361352-72361371 MS.gene91365:CDS 45.0%
GGGAGATAAGAGCAATTCTG+AGG - chr1.3:72361225-72361244 None:intergenic 45.0%
TTGGTCGTTGTTGTCTGCTT+GGG - chr1.3:72361131-72361150 None:intergenic 45.0%
TTTGGTCGTTGTTGTCTGCT+TGG - chr1.3:72361132-72361151 None:intergenic 45.0%
!! AATTCTGAGGCTGTTGTGGT+AGG - chr1.3:72361212-72361231 None:intergenic 45.0%
GCTGTTGTGGTAGGTATCAC+CGG - chr1.3:72361203-72361222 None:intergenic 50.0%
TGGTCGTTGTTGTCTGCTTG+GGG - chr1.3:72361130-72361149 None:intergenic 50.0%
! CAGTGTACACCTGACTTGTC+TGG + chr1.3:72361673-72361692 MS.gene91365:CDS 50.0%
!! GAGCAATTCTGAGGCTGTTG+TGG - chr1.3:72361216-72361235 None:intergenic 50.0%
CACTGGGGACCAGACAAGTC+AGG - chr1.3:72361685-72361704 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72361061 72361858 72361061 ID=MS.gene91365
chr1.3 mRNA 72361061 72361858 72361061 ID=MS.gene91365.t1;Parent=MS.gene91365
chr1.3 exon 72361061 72361858 72361061 ID=MS.gene91365.t1.exon1;Parent=MS.gene91365.t1
chr1.3 CDS 72361061 72361858 72361061 ID=cds.MS.gene91365.t1;Parent=MS.gene91365.t1
Gene Sequence

>MS.gene91365

ATGTCTATTCTCTCTTTAAGCCCACTCTCCTTTCTCTTTCTCATAATTATCCTTTTCACATCTAAACCCCAAGCAGACAACAACGACCAAAAATTCCACTACTTTTGCGACCAAAATAACGATAGAGGTAACTACATAACCGGTGATACCTACCACAACAGCCTCAGAATTGCTCTTATCTCCCTCACTTACAACTCAAAAATTGACTACGGTTTCTACAACACCAACAATGGCCAAAACAATGACAAAGTAAACGTCATTGGAATATGTAGAGGAGACATTAATCCTGATGATTGTCGCAAATGCCTAGTTGGTTCCAGATTCAATCTCACACAAGCATGTCCAAATAAAAAAGAAGCAATTGGATGGTACGAGGATGAGAAATGCATGTTACGTTATTCAGACCGTTCTATATTAGGCCTAAACGAAATTGGACCTGCTTATTTTGCATGGAACTTGAACAATGCAACAATGGCAGATCAATTTAATATCTTGGTAAAACAACTGTTGAATGATTTAAGAAGCAAGGCTATAAATGGTGATTCACATCGTAAGTATGTTGTAGGAACAATGCCGGGTCCTAGTAGTAATCAAATAATATATGGTCTTGTTCAGTGTACACCTGACTTGTCTGGTCCCCAGTGTGATGATTGTTTGCTTCAATCTATTGCTGAAGTTTCAAGATGTTGTAGCAATAGGATTGGTGCTAGAATTGTTAGACCAAGCTGTAATTTGAGGTTTGAAACTTCATACCAATTCTATCAACCTAAAGCAAAACTGGCTTCACATCTCCCATGA
Protein sequence

>MS.gene91365.t1

MSILSLSPLSFLFLIIILFTSKPQADNNDQKFHYFCDQNNDRGNYITGDTYHNSLRIALISLTYNSKIDYGFYNTNNGQNNDKVNVIGICRGDINPDDCRKCLVGSRFNLTQACPNKKEAIGWYEDEKCMLRYSDRSILGLNEIGPAYFAWNLNNATMADQFNILVKQLLNDLRSKAINGDSHRKYVVGTMPGPSSNQIIYGLVQCTPDLSGPQCDDCLLQSIAEVSRCCSNRIGARIVRPSCNLRFETSYQFYQPKAKLASHLP