Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91430.t1 | XP_003592432.1 | 99.4 | 704 | 4 | 0 | 1 | 704 | 1 | 704 | 4.30E-264 | 920.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91430.t1 | B9DHT4 | 81.0 | 701 | 129 | 2 | 4 | 702 | 6 | 704 | 6.1e-190 | 665.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91430.t1 | G7IE13 | 99.4 | 704 | 4 | 0 | 1 | 704 | 1 | 704 | 3.1e-264 | 920.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91430.t1 | TR | TRAF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene042713 | MS.gene91430 | PPI |
MS.gene045983 | MS.gene91430 | PPI |
MS.gene78758 | MS.gene91430 | PPI |
MS.gene053945 | MS.gene91430 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91430.t1 | MTR_1g104870 | 99.432 | 704 | 4 | 0 | 1 | 704 | 1 | 704 | 0.0 | 1429 |
MS.gene91430.t1 | MTR_5g005940 | 84.993 | 693 | 102 | 1 | 12 | 702 | 7 | 699 | 0.0 | 1174 |
MS.gene91430.t1 | MTR_5g005940 | 85.666 | 586 | 82 | 1 | 12 | 595 | 7 | 592 | 0.0 | 997 |
MS.gene91430.t1 | MTR_7g094910 | 63.930 | 682 | 238 | 4 | 18 | 698 | 11 | 685 | 0.0 | 851 |
MS.gene91430.t1 | MTR_7g094900 | 67.532 | 616 | 195 | 3 | 84 | 698 | 93 | 704 | 0.0 | 838 |
MS.gene91430.t1 | MTR_7g094910 | 65.210 | 618 | 207 | 4 | 18 | 634 | 11 | 621 | 0.0 | 780 |
MS.gene91430.t1 | MTR_3g008350 | 25.769 | 520 | 315 | 18 | 18 | 519 | 7 | 473 | 3.29e-20 | 95.1 |
MS.gene91430.t1 | MTR_1g012360 | 27.179 | 390 | 252 | 13 | 137 | 508 | 104 | 479 | 7.41e-19 | 91.3 |
MS.gene91430.t1 | MTR_7g094490 | 31.288 | 163 | 92 | 3 | 517 | 664 | 187 | 344 | 1.54e-16 | 82.8 |
MS.gene91430.t1 | MTR_1g018180 | 26.000 | 250 | 177 | 3 | 295 | 536 | 74 | 323 | 1.07e-15 | 79.7 |
MS.gene91430.t1 | MTR_3g466220 | 30.978 | 184 | 125 | 2 | 194 | 377 | 549 | 730 | 3.68e-15 | 80.1 |
MS.gene91430.t1 | MTR_1g072650 | 31.098 | 164 | 89 | 4 | 519 | 664 | 191 | 348 | 3.92e-15 | 78.6 |
MS.gene91430.t1 | MTR_3g466220 | 30.978 | 184 | 125 | 2 | 194 | 377 | 528 | 709 | 4.41e-15 | 79.7 |
MS.gene91430.t1 | MTR_1g012360 | 25.272 | 368 | 246 | 11 | 137 | 487 | 104 | 459 | 8.19e-14 | 74.7 |
MS.gene91430.t1 | MTR_1g012360 | 25.208 | 361 | 241 | 11 | 137 | 480 | 104 | 452 | 1.65e-13 | 73.9 |
MS.gene91430.t1 | MTR_5g087500 | 30.189 | 159 | 90 | 5 | 524 | 663 | 183 | 339 | 8.93e-13 | 70.9 |
MS.gene91430.t1 | MTR_5g087500 | 26.020 | 196 | 123 | 6 | 524 | 700 | 183 | 375 | 9.36e-13 | 71.2 |
MS.gene91430.t1 | MTR_3g069000 | 32.624 | 141 | 77 | 2 | 539 | 664 | 58 | 195 | 9.53e-13 | 69.7 |
MS.gene91430.t1 | MTR_5g087500 | 30.189 | 159 | 90 | 5 | 524 | 663 | 183 | 339 | 1.04e-12 | 70.5 |
MS.gene91430.t1 | MTR_4g063800 | 30.769 | 195 | 131 | 4 | 198 | 391 | 353 | 544 | 4.81e-12 | 69.7 |
MS.gene91430.t1 | MTR_7g097020 | 28.270 | 237 | 161 | 4 | 175 | 411 | 465 | 692 | 8.34e-12 | 68.9 |
MS.gene91430.t1 | MTR_4g131510 | 24.138 | 319 | 217 | 10 | 59 | 372 | 47 | 345 | 2.59e-11 | 66.6 |
MS.gene91430.t1 | MTR_1g094215 | 30.928 | 194 | 132 | 2 | 198 | 391 | 162 | 353 | 6.66e-11 | 65.5 |
MS.gene91430.t1 | MTR_1g094215 | 30.928 | 194 | 132 | 2 | 198 | 391 | 345 | 536 | 8.57e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91430.t1 | AT5G19330 | 79.315 | 701 | 141 | 2 | 4 | 702 | 6 | 704 | 0.0 | 1100 |
MS.gene91430.t1 | AT5G19330 | 73.231 | 650 | 115 | 7 | 4 | 645 | 6 | 604 | 0.0 | 874 |
MS.gene91430.t1 | AT5G13060 | 62.121 | 660 | 248 | 2 | 39 | 697 | 68 | 726 | 0.0 | 835 |
MS.gene91430.t1 | AT3G06190 | 32.022 | 178 | 99 | 4 | 522 | 681 | 182 | 355 | 1.57e-17 | 85.5 |
MS.gene91430.t1 | AT3G06190 | 32.298 | 161 | 88 | 3 | 522 | 664 | 182 | 339 | 8.25e-17 | 83.6 |
MS.gene91430.t1 | AT5G19000 | 29.747 | 158 | 96 | 2 | 522 | 664 | 183 | 340 | 2.20e-14 | 76.3 |
MS.gene91430.t1 | AT5G19000 | 29.747 | 158 | 96 | 2 | 522 | 664 | 183 | 340 | 2.20e-14 | 76.3 |
MS.gene91430.t1 | AT3G03740 | 31.126 | 151 | 87 | 2 | 533 | 667 | 210 | 359 | 4.52e-14 | 75.9 |
MS.gene91430.t1 | AT3G43700 | 34.694 | 147 | 77 | 4 | 539 | 667 | 205 | 350 | 1.09e-13 | 73.6 |
MS.gene91430.t1 | AT3G43700 | 34.694 | 147 | 77 | 4 | 539 | 667 | 205 | 350 | 1.12e-13 | 73.6 |
MS.gene91430.t1 | AT2G23140 | 30.978 | 184 | 125 | 2 | 194 | 377 | 542 | 723 | 1.16e-13 | 75.1 |
MS.gene91430.t1 | AT2G23140 | 30.978 | 184 | 125 | 2 | 194 | 377 | 539 | 720 | 1.22e-13 | 75.1 |
MS.gene91430.t1 | AT2G23140 | 30.978 | 184 | 125 | 2 | 194 | 377 | 539 | 720 | 1.22e-13 | 75.1 |
MS.gene91430.t1 | AT3G43700 | 34.694 | 147 | 77 | 4 | 539 | 667 | 205 | 350 | 1.43e-13 | 73.9 |
MS.gene91430.t1 | AT1G23030 | 29.740 | 269 | 179 | 8 | 140 | 402 | 272 | 536 | 2.35e-13 | 73.9 |
MS.gene91430.t1 | AT2G23140 | 30.978 | 184 | 125 | 2 | 194 | 377 | 350 | 531 | 2.50e-13 | 73.9 |
MS.gene91430.t1 | AT2G23140 | 30.978 | 184 | 125 | 2 | 194 | 377 | 350 | 531 | 2.50e-13 | 73.9 |
MS.gene91430.t1 | AT3G46510 | 26.502 | 283 | 173 | 6 | 198 | 480 | 354 | 601 | 2.51e-13 | 73.9 |
MS.gene91430.t1 | AT4G02150 | 25.407 | 307 | 202 | 11 | 72 | 372 | 139 | 424 | 4.72e-13 | 72.8 |
MS.gene91430.t1 | AT3G01400 | 26.147 | 218 | 145 | 4 | 290 | 495 | 73 | 286 | 1.59e-12 | 70.1 |
MS.gene91430.t1 | AT5G67340 | 25.714 | 280 | 185 | 7 | 146 | 411 | 364 | 634 | 2.24e-12 | 70.9 |
MS.gene91430.t1 | AT5G67340 | 25.714 | 280 | 185 | 7 | 146 | 411 | 364 | 634 | 2.24e-12 | 70.9 |
MS.gene91430.t1 | AT5G58680 | 24.569 | 232 | 163 | 3 | 288 | 509 | 69 | 298 | 3.14e-12 | 69.3 |
MS.gene91430.t1 | AT4G02150 | 25.172 | 290 | 191 | 10 | 72 | 356 | 139 | 407 | 3.46e-12 | 69.3 |
MS.gene91430.t1 | AT2G39760 | 32.143 | 140 | 77 | 2 | 540 | 664 | 195 | 331 | 2.05e-11 | 67.0 |
MS.gene91430.t1 | AT2G39760 | 32.143 | 140 | 77 | 2 | 540 | 664 | 195 | 331 | 2.51e-11 | 66.2 |
MS.gene91430.t1 | AT2G39760 | 32.143 | 140 | 77 | 2 | 540 | 664 | 195 | 331 | 3.11e-11 | 65.9 |
MS.gene91430.t1 | AT2G39760 | 32.143 | 140 | 77 | 2 | 540 | 664 | 195 | 331 | 3.11e-11 | 65.9 |
MS.gene91430.t1 | AT3G06720 | 22.500 | 320 | 221 | 9 | 59 | 372 | 123 | 421 | 4.89e-11 | 66.2 |
MS.gene91430.t1 | AT3G06720 | 22.500 | 320 | 221 | 9 | 59 | 372 | 123 | 421 | 4.89e-11 | 66.2 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACTTCCCATCTAATATT+TGG | 0.076983 | 1.3:-71633347 | None:intergenic |
GCCGCTTCCCTCTGACTTTC+AGG | 0.083665 | 1.3:-71629182 | None:intergenic |
AATGCTGCTTTCGCTCTTTA+TGG | 0.176465 | 1.3:+71630222 | MS.gene91430:CDS |
GGTGCTTTACAACCAGTTAT+TGG | 0.256939 | 1.3:+71628956 | MS.gene91430:CDS |
AGACAGGGCCGAGGCTTTAT+TGG | 0.273094 | 1.3:-71631844 | None:intergenic |
TGCCTTTGCATTGGGGAGAT+TGG | 0.285881 | 1.3:+71629781 | MS.gene91430:CDS |
TCACTGCAGATTACAGTCTA+TGG | 0.287035 | 1.3:-71634430 | None:intergenic |
AGAACCTCTTTCTTTATATT+CGG | 0.303887 | 1.3:-71628926 | None:intergenic |
AAAGGGAGTGCTTTCGCATT+AGG | 0.305562 | 1.3:+71626470 | MS.gene91430:CDS |
CCTACGAATGAGACTATTAA+TGG | 0.310848 | 1.3:-71628357 | None:intergenic |
TCCACCACTTGTTCATTTGC+TGG | 0.314607 | 1.3:+71628533 | MS.gene91430:CDS |
CAATGTTTGATGGTGGTTAT+AGG | 0.316662 | 1.3:+71632937 | MS.gene91430:CDS |
ATAATGTGTCGGATTTCATT+AGG | 0.317549 | 1.3:+71631067 | MS.gene91430:CDS |
TGTCTCTCAGGATATATTAC+TGG | 0.318295 | 1.3:+71633715 | MS.gene91430:intron |
AAACTTCCCATCTAATATTT+GGG | 0.326330 | 1.3:-71633346 | None:intergenic |
CAAGACATTGAAAAGATTAG+AGG | 0.333836 | 1.3:+71631348 | MS.gene91430:CDS |
GCGTCCAGATTTATATATAC+TGG | 0.337107 | 1.3:+71633474 | MS.gene91430:intron |
TAGAGATCCCAAATATTAGA+TGG | 0.348876 | 1.3:+71633339 | MS.gene91430:CDS |
AAGAAAGAGGTTCTATTTGC+TGG | 0.352180 | 1.3:+71628935 | MS.gene91430:CDS |
TGTGGAAGGAGGTGCGATTC+CGG | 0.359310 | 1.3:+71626370 | MS.gene91430:CDS |
GAAATGTCTGCCTTTGCATT+GGG | 0.370822 | 1.3:+71629773 | MS.gene91430:CDS |
TCTCGTCGAAGTTGCTAATC+AGG | 0.372235 | 1.3:+71626154 | MS.gene91430:CDS |
TACCTAAGTAATCCAATAAC+TGG | 0.378852 | 1.3:-71628968 | None:intergenic |
TTCTGAACGCAATCAGTAAC+AGG | 0.383768 | 1.3:-71626419 | None:intergenic |
AGAAGGTCTTGAGCAATATC+TGG | 0.388231 | 1.3:-71633513 | None:intergenic |
CCTCAATGATAATGCATTGA+AGG | 0.391244 | 1.3:-71633771 | None:intergenic |
GACGAGATCTGACGGTCTTC+CGG | 0.398909 | 1.3:-71626098 | None:intergenic |
AAATGATGAAAATAAAATTC+AGG | 0.399085 | 1.3:+71628617 | MS.gene91430:CDS |
GAAGGAGGAGCGGCGTCTAC+AGG | 0.402577 | 1.3:-71631867 | None:intergenic |
ATTCTTCTTTGATCATCTGC+AGG | 0.411866 | 1.3:-71631612 | None:intergenic |
CCGCTTCCCTCTGACTTTCA+GGG | 0.417129 | 1.3:-71629181 | None:intergenic |
ACAAAGTAATTGCGGATCTC+TGG | 0.420288 | 1.3:-71634383 | None:intergenic |
ACAATTAGTTGTTGATGTTC+CGG | 0.420661 | 1.3:-71628266 | None:intergenic |
TAATGTGTCGGATTTCATTA+GGG | 0.421529 | 1.3:+71631068 | MS.gene91430:CDS |
AGCACCATCAAGTTGCTGTT+TGG | 0.423972 | 1.3:-71631802 | None:intergenic |
AGGGAAGCGGCATTGTTACT+TGG | 0.426859 | 1.3:+71629194 | MS.gene91430:CDS |
AGCTCCAAACAGCAACTTGA+TGG | 0.434657 | 1.3:+71631798 | MS.gene91430:CDS |
TTCTCAACTTCATGCTCAAA+CGG | 0.439189 | 1.3:-71626449 | None:intergenic |
GCATTTCGTGCAATGTTTGA+TGG | 0.440899 | 1.3:+71632927 | MS.gene91430:CDS |
TAAGTTAGACGAAGAATTAC+CGG | 0.441802 | 1.3:+71626079 | MS.gene91430:CDS |
AATGTTTGATGGTGGTTATA+GGG | 0.449011 | 1.3:+71632938 | MS.gene91430:CDS |
AAGATCAACAAGGTGTGTTA+AGG | 0.453328 | 1.3:-71628300 | None:intergenic |
AGAAATGTCTGCCTTTGCAT+TGG | 0.459751 | 1.3:+71629772 | MS.gene91430:CDS |
ATCAAGTTGCTGTTTGGAGC+TGG | 0.459757 | 1.3:-71631796 | None:intergenic |
TGCTCATAGAATTTGTCTAC+TGG | 0.460117 | 1.3:+71632893 | MS.gene91430:CDS |
TGCATTGGGGAGATTGGCCC+AGG | 0.465694 | 1.3:+71629787 | MS.gene91430:CDS |
ATTTCTCTAAGTTGTACATC+AGG | 0.465886 | 1.3:-71629755 | None:intergenic |
GAGCGGCGTCTACAGGAGAC+AGG | 0.489511 | 1.3:-71631860 | None:intergenic |
CATGAGAGGCAAACCTGACA+TGG | 0.490179 | 1.3:-71628430 | None:intergenic |
GATAAGTTGAGCGCGAGGCC+AGG | 0.490906 | 1.3:+71633827 | MS.gene91430:CDS |
CTCGCCGATCTCGCGAAGAA+TGG | 0.492122 | 1.3:+71626248 | MS.gene91430:CDS |
TCACTGCCTCTCCGAGAGGA+AGG | 0.495947 | 1.3:+71626046 | MS.gene91430:CDS |
ACTGCCTCTCCGAGAGGAAG+GGG | 0.496118 | 1.3:+71626048 | MS.gene91430:CDS |
TCTCGGAGAGGCAGTGACCT+TGG | 0.498509 | 1.3:-71626040 | None:intergenic |
TTTGAGCATGAAGTTGAGAA+AGG | 0.499940 | 1.3:+71626452 | MS.gene91430:CDS |
GTATTACAGGTTGGTGTGAT+CGG | 0.500755 | 1.3:+71628884 | MS.gene91430:intron |
ATCTTATGCGAGTTTCAGAA+AGG | 0.503114 | 1.3:+71631547 | MS.gene91430:CDS |
GCAACATTAAAACCCATGTC+AGG | 0.505215 | 1.3:+71628417 | MS.gene91430:CDS |
TTCTTCTTACAGGTTTACTT+AGG | 0.509350 | 1.3:+71632678 | MS.gene91430:intron |
TCTTATGCGAGTTTCAGAAA+GGG | 0.510889 | 1.3:+71631548 | MS.gene91430:CDS |
TTTACCATTCTTCGCGAGAT+CGG | 0.511331 | 1.3:-71626252 | None:intergenic |
TTTCTGTGTAGGATGGAAGG+TGG | 0.512896 | 1.3:+71628507 | MS.gene91430:intron |
TTATGGCCTTGCAGAGAATG+AGG | 0.514595 | 1.3:+71630239 | MS.gene91430:CDS |
CCATTAATAGTCTCATTCGT+AGG | 0.517559 | 1.3:+71628357 | MS.gene91430:CDS |
AGATTACAGTCTATGGGAGT+TGG | 0.519743 | 1.3:-71634423 | None:intergenic |
GCACGTTCGTCGGCGGTAGG+CGG | 0.520168 | 1.3:-71626125 | None:intergenic |
CCCTGAAAGTCAGAGGGAAG+CGG | 0.523107 | 1.3:+71629181 | MS.gene91430:CDS |
TGTAAACAATGCTACATTGT+CGG | 0.525597 | 1.3:+71632710 | MS.gene91430:CDS |
ATTGATCAGCTGCTCGAAGA+AGG | 0.530249 | 1.3:-71633530 | None:intergenic |
GGAAGTTGTGAATGTGATTG+TGG | 0.532465 | 1.3:+71626352 | MS.gene91430:CDS |
CACTGCCTCTCCGAGAGGAA+GGG | 0.532570 | 1.3:+71626047 | MS.gene91430:CDS |
TTGAGCATGAAGTTGAGAAA+GGG | 0.538121 | 1.3:+71626453 | MS.gene91430:CDS |
ATCTCCGAATATAAAGAAAG+AGG | 0.539197 | 1.3:+71628922 | MS.gene91430:CDS |
ATAAGTTGAGCGCGAGGCCA+GGG | 0.542921 | 1.3:+71633828 | MS.gene91430:CDS |
ATTAGGACTTCTCGCCGTCA+AGG | 0.543293 | 1.3:+71626487 | MS.gene91430:CDS |
TTCTTCTTTGATCATCTGCA+GGG | 0.544161 | 1.3:-71631611 | None:intergenic |
CCTTCAATGCATTATCATTG+AGG | 0.544504 | 1.3:+71633771 | MS.gene91430:CDS |
TGAAGATGCTTAATCAAAGC+CGG | 0.546672 | 1.3:-71626389 | None:intergenic |
GAGAAGTGCCGCACGTTCGT+CGG | 0.547594 | 1.3:-71626135 | None:intergenic |
TCGGATTTCATTAGGGTAGG+TGG | 0.548232 | 1.3:+71631075 | MS.gene91430:CDS |
AACCAGTTATTGGATTACTT+AGG | 0.550875 | 1.3:+71628966 | MS.gene91430:CDS |
TCCTCCTTCTCCAACACCAC+AGG | 0.551268 | 1.3:+71631881 | MS.gene91430:CDS |
TTCCCCTCAGGATAATGTGT+CGG | 0.552630 | 1.3:+71631056 | MS.gene91430:intron |
ACCTGTGGTGTTGGAGAAGG+AGG | 0.552899 | 1.3:-71631882 | None:intergenic |
CACTGCAGATTACAGTCTAT+GGG | 0.555635 | 1.3:-71634429 | None:intergenic |
TCCAGCAAATGAACAAGTGG+TGG | 0.556965 | 1.3:-71628534 | None:intergenic |
CGCAGCATTAGAATCAGAGT+CGG | 0.557692 | 1.3:-71628732 | None:intergenic |
CATTGTGTGCAATACCAGCT+TGG | 0.557922 | 1.3:-71630143 | None:intergenic |
AAGGTGCAAAGAGCAGCTGC+TGG | 0.559222 | 1.3:+71628570 | MS.gene91430:CDS |
GAGCTTTAACAAAGTAATTG+CGG | 0.561626 | 1.3:-71634391 | None:intergenic |
GCTGGAATTTGCTGATACAA+AGG | 0.566935 | 1.3:+71628551 | MS.gene91430:CDS |
AGATTAGAGGAGAAGATTCA+CGG | 0.568629 | 1.3:+71631361 | MS.gene91430:CDS |
GAGTCAAGAAGCTTGAGAAG+TGG | 0.569377 | 1.3:-71630177 | None:intergenic |
CTTGAACCTACCTGTGGTGT+TGG | 0.575698 | 1.3:-71631891 | None:intergenic |
CTTATGCGAGTTTCAGAAAG+GGG | 0.578222 | 1.3:+71631549 | MS.gene91430:CDS |
ATCATACCTCATTCTCTGCA+AGG | 0.581209 | 1.3:-71630245 | None:intergenic |
ATGAGTAGCACGCTTAGCCG+CGG | 0.581562 | 1.3:-71626222 | None:intergenic |
GCCGCACGTTCGTCGGCGGT+AGG | 0.583158 | 1.3:-71626128 | None:intergenic |
CACGCTGCCCTGAAAGTCAG+AGG | 0.583183 | 1.3:+71629174 | MS.gene91430:CDS |
AGAGATCCCAAATATTAGAT+GGG | 0.587179 | 1.3:+71633340 | MS.gene91430:CDS |
CAAGTTGGCCAATAAAGCCT+CGG | 0.587308 | 1.3:+71631836 | MS.gene91430:CDS |
CTCGCATAAGATATAACAGA+TGG | 0.587389 | 1.3:-71631536 | None:intergenic |
TGCTGCTATTCATTATGAAG+CGG | 0.591200 | 1.3:+71628764 | MS.gene91430:CDS |
GACGAAAGCATCTCTATCAA+AGG | 0.592011 | 1.3:-71629731 | None:intergenic |
GGAACATCAACAACTAATTG+TGG | 0.592529 | 1.3:+71628268 | MS.gene91430:CDS |
ACTTCATGCTCAAACGGCAA+CGG | 0.593141 | 1.3:-71626443 | None:intergenic |
AGCTACTGATTCAGACTGCA+AGG | 0.598009 | 1.3:+71629226 | MS.gene91430:CDS |
GTCTACAGGAGACAGGGCCG+AGG | 0.599726 | 1.3:-71631853 | None:intergenic |
AAGTGCCGCACGTTCGTCGG+CGG | 0.602387 | 1.3:-71626132 | None:intergenic |
GTGTCGGATTTCATTAGGGT+AGG | 0.603157 | 1.3:+71631072 | MS.gene91430:CDS |
GGCCAATCTCCCCAATGCAA+AGG | 0.606240 | 1.3:-71629783 | None:intergenic |
CCTACCTGTGGTGTTGGAGA+AGG | 0.607565 | 1.3:-71631885 | None:intergenic |
CAGGACACACATAACCAAGC+TGG | 0.608709 | 1.3:+71630129 | MS.gene91430:intron |
ATGGAGTTTCAGAGACGCCA+AGG | 0.609263 | 1.3:+71626023 | MS.gene91430:CDS |
GCCTACCGCCGACGAACGTG+CGG | 0.610300 | 1.3:+71626127 | MS.gene91430:CDS |
CATGACAGGAGAAGGATGCA+AGG | 0.611719 | 1.3:+71633312 | MS.gene91430:intron |
CATTAATAGTCTCATTCGTA+GGG | 0.616601 | 1.3:+71628358 | MS.gene91430:CDS |
CTGTGAGTACACAATTGCAC+AGG | 0.621930 | 1.3:+71633578 | MS.gene91430:CDS |
AAATGTCTGCCTTTGCATTG+GGG | 0.623106 | 1.3:+71629774 | MS.gene91430:CDS |
AATTCCAGCAAATGAACAAG+TGG | 0.624346 | 1.3:-71628537 | None:intergenic |
GCTGGTATTGCACACAATGG+TGG | 0.625726 | 1.3:+71630147 | MS.gene91430:CDS |
TGCTGCGGCTTTATGCAAGT+TGG | 0.629100 | 1.3:+71631821 | MS.gene91430:CDS |
ACGCTGCCCTGAAAGTCAGA+GGG | 0.634516 | 1.3:+71629175 | MS.gene91430:CDS |
TTTCGTGCAATGTTTGATGG+TGG | 0.641730 | 1.3:+71632930 | MS.gene91430:CDS |
GGAGTTCAAAGACTACAAGA+AGG | 0.642933 | 1.3:+71631096 | MS.gene91430:CDS |
GTTGTGAATGTGATTGTGGA+AGG | 0.644050 | 1.3:+71626356 | MS.gene91430:CDS |
GCGGTGCCGACGAGATCTGA+CGG | 0.644725 | 1.3:-71626106 | None:intergenic |
AAAGCATCTCTATCAAAGGT+CGG | 0.649168 | 1.3:-71629727 | None:intergenic |
ATGACAGGAGAAGGATGCAA+GGG | 0.650751 | 1.3:+71633313 | MS.gene91430:intron |
TGGTGTTGGAGAAGGAGGAG+CGG | 0.652625 | 1.3:-71631877 | None:intergenic |
TTTGCCCCTTCCTCTCGGAG+AGG | 0.654825 | 1.3:-71626052 | None:intergenic |
GAATGAAGACGATCGAGCCG+CGG | 0.657533 | 1.3:+71626205 | MS.gene91430:CDS |
TTCTCGAGTCTACTTTCACG+TGG | 0.661326 | 1.3:+71626183 | MS.gene91430:CDS |
GTGAATGTGATTGTGGAAGG+AGG | 0.669059 | 1.3:+71626359 | MS.gene91430:CDS |
ATGAGAGGCAAACCTGACAT+GGG | 0.671038 | 1.3:-71628429 | None:intergenic |
TAGGTTCACATTGTACAGAG+AGG | 0.672210 | 1.3:+71629698 | MS.gene91430:intron |
ACAGCAACTTGATGGTGCTG+CGG | 0.686608 | 1.3:+71631806 | MS.gene91430:CDS |
AAGGTCACTGCCTCTCCGAG+AGG | 0.690613 | 1.3:+71626042 | MS.gene91430:CDS |
AGCGGCGTCTACAGGAGACA+GGG | 0.692565 | 1.3:-71631859 | None:intergenic |
ACTTTGATAAGTTGAGCGCG+AGG | 0.693850 | 1.3:+71633822 | MS.gene91430:CDS |
GCCTCTTTAAAAGATCAACA+AGG | 0.700661 | 1.3:-71628310 | None:intergenic |
CAAGCTGGTATTGCACACAA+TGG | 0.700835 | 1.3:+71630144 | MS.gene91430:CDS |
GGAAGACCGTCAGATCTCGT+CGG | 0.712275 | 1.3:+71626100 | MS.gene91430:CDS |
CAACAACTAATTGTGGACAG+TGG | 0.718009 | 1.3:+71628275 | MS.gene91430:CDS |
TGAACGCAATCAGTAACAGG+CGG | 0.719381 | 1.3:-71626416 | None:intergenic |
CGTGAAAGTAGACTCGAGAA+CGG | 0.732007 | 1.3:-71626180 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 71626023 | 71634442 | 71626023 | ID=MS.gene91430 |
chr1.3 | mRNA | 71626023 | 71634442 | 71626023 | ID=MS.gene91430.t1;Parent=MS.gene91430 |
chr1.3 | exon | 71626023 | 71626269 | 71626023 | ID=MS.gene91430.t1.exon1;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71626023 | 71626269 | 71626023 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71626351 | 71626508 | 71626351 | ID=MS.gene91430.t1.exon2;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71626351 | 71626508 | 71626351 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71628266 | 71628438 | 71628266 | ID=MS.gene91430.t1.exon3;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71628266 | 71628438 | 71628266 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71628518 | 71628638 | 71628518 | ID=MS.gene91430.t1.exon4;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71628518 | 71628638 | 71628518 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71628711 | 71628785 | 71628711 | ID=MS.gene91430.t1.exon5;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71628711 | 71628785 | 71628711 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71628893 | 71628987 | 71628893 | ID=MS.gene91430.t1.exon6;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71628893 | 71628987 | 71628893 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71629172 | 71629247 | 71629172 | ID=MS.gene91430.t1.exon7;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71629172 | 71629247 | 71629172 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71629701 | 71629808 | 71629701 | ID=MS.gene91430.t1.exon8;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71629701 | 71629808 | 71629701 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71630132 | 71630260 | 71630132 | ID=MS.gene91430.t1.exon9;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71630132 | 71630260 | 71630132 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71631066 | 71631134 | 71631066 | ID=MS.gene91430.t1.exon10;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71631066 | 71631134 | 71631066 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71631328 | 71631387 | 71631328 | ID=MS.gene91430.t1.exon11;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71631328 | 71631387 | 71631328 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71631528 | 71631651 | 71631528 | ID=MS.gene91430.t1.exon12;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71631528 | 71631651 | 71631528 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71631763 | 71631902 | 71631763 | ID=MS.gene91430.t1.exon13;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71631763 | 71631902 | 71631763 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71632690 | 71632753 | 71632690 | ID=MS.gene91430.t1.exon14;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71632690 | 71632753 | 71632690 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71632880 | 71632959 | 71632880 | ID=MS.gene91430.t1.exon15;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71632880 | 71632959 | 71632880 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71633320 | 71633384 | 71633320 | ID=MS.gene91430.t1.exon16;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71633320 | 71633384 | 71633320 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71633482 | 71633599 | 71633482 | ID=MS.gene91430.t1.exon17;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71633482 | 71633599 | 71633482 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71633725 | 71633849 | 71633725 | ID=MS.gene91430.t1.exon18;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71633725 | 71633849 | 71633725 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
chr1.3 | exon | 71634355 | 71634442 | 71634355 | ID=MS.gene91430.t1.exon19;Parent=MS.gene91430.t1 |
chr1.3 | CDS | 71634355 | 71634442 | 71634355 | ID=cds.MS.gene91430.t1;Parent=MS.gene91430.t1 |
Gene Sequence |
Protein sequence |