Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91565.t1 | XP_013448940.1 | 70.2 | 439 | 41 | 1 | 1 | 349 | 72 | 510 | 2.60E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91565.t1 | A0A072U016 | 70.2 | 439 | 41 | 1 | 1 | 349 | 72 | 510 | 1.9e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055215 | MS.gene91565 | 0.840615 | 7.81E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91565.t1 | MTR_7g063090 | 80.000 | 270 | 49 | 2 | 1 | 269 | 72 | 337 | 1.14e-152 | 439 |
| MS.gene91565.t1 | MTR_7g063090 | 93.233 | 133 | 9 | 0 | 217 | 349 | 378 | 510 | 3.25e-86 | 269 |
| MS.gene91565.t1 | MTR_3g068125 | 63.265 | 196 | 68 | 2 | 20 | 215 | 81 | 272 | 3.77e-83 | 261 |
| MS.gene91565.t1 | MTR_3g068125 | 41.085 | 129 | 70 | 3 | 219 | 347 | 366 | 488 | 2.18e-25 | 107 |
| MS.gene91565.t1 | MTR_8g028765 | 57.949 | 195 | 82 | 0 | 21 | 215 | 77 | 271 | 1.56e-74 | 238 |
| MS.gene91565.t1 | MTR_4g061590 | 45.977 | 261 | 124 | 3 | 10 | 264 | 96 | 345 | 4.64e-74 | 238 |
| MS.gene91565.t1 | MTR_7g078320 | 57.286 | 199 | 85 | 0 | 17 | 215 | 73 | 271 | 1.16e-72 | 233 |
| MS.gene91565.t1 | MTR_2g095970 | 52.913 | 206 | 95 | 1 | 10 | 215 | 121 | 324 | 1.84e-70 | 229 |
| MS.gene91565.t1 | MTR_5g010070 | 55.385 | 195 | 85 | 1 | 21 | 215 | 82 | 274 | 2.87e-69 | 225 |
| MS.gene91565.t1 | MTR_8g098835 | 50.962 | 208 | 97 | 2 | 10 | 215 | 94 | 298 | 6.92e-68 | 222 |
| MS.gene91565.t1 | MTR_4g046680 | 48.469 | 196 | 98 | 1 | 21 | 216 | 74 | 266 | 4.25e-62 | 206 |
| MS.gene91565.t1 | MTR_5g008060 | 44.048 | 252 | 127 | 4 | 18 | 269 | 122 | 359 | 7.28e-62 | 206 |
| MS.gene91565.t1 | MTR_4g046677 | 46.753 | 231 | 120 | 3 | 21 | 249 | 63 | 292 | 1.34e-57 | 194 |
| MS.gene91565.t1 | MTR_2g088940 | 49.510 | 204 | 97 | 3 | 19 | 217 | 55 | 257 | 4.36e-52 | 179 |
| MS.gene91565.t1 | MTR_2g088940 | 49.510 | 204 | 97 | 3 | 19 | 217 | 55 | 257 | 5.31e-52 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91565.t1 | AT2G37730 | 73.659 | 205 | 54 | 0 | 11 | 215 | 86 | 290 | 1.54e-108 | 327 |
| MS.gene91565.t1 | AT2G37730 | 46.154 | 143 | 75 | 2 | 208 | 349 | 373 | 514 | 8.31e-36 | 136 |
| MS.gene91565.t1 | AT4G11350 | 55.122 | 205 | 84 | 4 | 18 | 215 | 84 | 287 | 4.61e-71 | 224 |
| MS.gene91565.t1 | AT1G01570 | 47.547 | 265 | 126 | 6 | 14 | 269 | 44 | 304 | 1.27e-70 | 228 |
| MS.gene91565.t1 | AT1G01570 | 47.547 | 265 | 126 | 6 | 14 | 269 | 75 | 335 | 2.48e-70 | 228 |
| MS.gene91565.t1 | AT5G41460 | 54.592 | 196 | 88 | 1 | 21 | 215 | 110 | 305 | 2.11e-69 | 226 |
| MS.gene91565.t1 | AT4G23490 | 53.960 | 202 | 90 | 1 | 17 | 215 | 105 | 306 | 3.01e-69 | 226 |
| MS.gene91565.t1 | AT3G11420 | 62.000 | 200 | 67 | 5 | 20 | 215 | 90 | 284 | 3.36e-69 | 225 |
| MS.gene91565.t1 | AT3G11420 | 38.931 | 131 | 78 | 2 | 217 | 346 | 376 | 505 | 3.72e-23 | 100 |
| MS.gene91565.t1 | AT4G11350 | 55.122 | 205 | 84 | 4 | 18 | 215 | 84 | 287 | 8.98e-69 | 224 |
| MS.gene91565.t1 | AT4G00295 | 51.111 | 225 | 97 | 5 | 4 | 215 | 55 | 279 | 3.87e-64 | 211 |
| MS.gene91565.t1 | AT4G15240 | 51.777 | 197 | 92 | 1 | 21 | 217 | 78 | 271 | 7.11e-61 | 203 |
| MS.gene91565.t1 | AT1G33250 | 44.444 | 225 | 115 | 2 | 22 | 246 | 130 | 344 | 4.84e-60 | 202 |
| MS.gene91565.t1 | AT1G07850 | 53.266 | 199 | 87 | 2 | 21 | 217 | 123 | 317 | 2.42e-58 | 197 |
| MS.gene91565.t1 | AT1G05280 | 47.291 | 203 | 102 | 2 | 20 | 217 | 67 | 269 | 5.03e-56 | 189 |
| MS.gene91565.t1 | AT1G05280 | 47.291 | 203 | 102 | 2 | 20 | 217 | 67 | 269 | 7.11e-56 | 190 |
| MS.gene91565.t1 | AT5G12460 | 42.574 | 202 | 103 | 4 | 18 | 215 | 33 | 225 | 1.90e-48 | 169 |
Find 74 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCGCAGCATTGTCTTCT+TGG | 0.142429 | 7.1:-38613019 | None:intergenic |
| CAAAGTTGCATTAGTGAAAT+TGG | 0.179177 | 7.1:+38610827 | MS.gene91565:CDS |
| AATCGTTATTCTGAGTATTA+TGG | 0.239704 | 7.1:+38610788 | MS.gene91565:CDS |
| GGCGGAGCTTGTGAAGATTT+TGG | 0.263838 | 7.1:+38610754 | MS.gene91565:CDS |
| GGTCGGGTATTAAAAGTAAA+TGG | 0.275509 | 7.1:-38612067 | None:intergenic |
| CTTCGCCAGATTCTATGATT+AGG | 0.284334 | 7.1:-38610250 | None:intergenic |
| GTGTGACAAGGTTGATTATA+AGG | 0.297026 | 7.1:+38612207 | MS.gene91565:CDS |
| CTGATGAAAACCAGGTTCTT+TGG | 0.305345 | 7.1:-38610861 | None:intergenic |
| AAAAGATATGATGATGGTTC+AGG | 0.309105 | 7.1:+38612178 | MS.gene91565:CDS |
| CATAATCAAATGTACTATAT+TGG | 0.321611 | 7.1:+38610641 | MS.gene91565:CDS |
| TTCGCCAGATTCTATGATTA+GGG | 0.327669 | 7.1:-38610249 | None:intergenic |
| ATGGATCGGATTGAGGGTTT+TGG | 0.334021 | 7.1:+38612130 | MS.gene91565:CDS |
| AACACCGTAACGAGGTTGTC+GGG | 0.384605 | 7.1:-38610605 | None:intergenic |
| GTGTCGGCAGAGACTTTATA+TGG | 0.412392 | 7.1:-38610446 | None:intergenic |
| TCAAGATCCGTGTGTGAAAC+CGG | 0.425631 | 7.1:+38612096 | MS.gene91565:CDS |
| GTCGGGTATTAAAAGTAAAT+GGG | 0.428065 | 7.1:-38612066 | None:intergenic |
| TTATATGGTGGCGAAGTCTC+TGG | 0.436889 | 7.1:-38610431 | None:intergenic |
| TTCACAAGCTCCGCCGCTAA+AGG | 0.436962 | 7.1:-38610746 | None:intergenic |
| ACCATGGCTTATGGCGGCGG+AGG | 0.439626 | 7.1:+38610707 | MS.gene91565:CDS |
| CATTTAAAACGTGGAAGACT+TGG | 0.440818 | 7.1:+38612035 | MS.gene91565:CDS |
| TCACAAGCTCCGCCGCTAAA+GGG | 0.449204 | 7.1:-38610745 | None:intergenic |
| AAAACCCTAATCATAGAATC+TGG | 0.456794 | 7.1:+38610245 | MS.gene91565:CDS |
| TAATGTGAGGTGGTTTGTAA+TGG | 0.468209 | 7.1:+38610559 | MS.gene91565:CDS |
| AACAGCTAAAGAGCTTGAAA+TGG | 0.468515 | 7.1:+38612003 | MS.gene91565:intron |
| AAAGATATGATGATGGTTCA+GGG | 0.471625 | 7.1:+38612179 | MS.gene91565:CDS |
| TGCTATAAGCTACCCTTTAG+CGG | 0.474080 | 7.1:+38610733 | MS.gene91565:CDS |
| TACACCATGGCTTATGGCGG+CGG | 0.480790 | 7.1:+38610704 | MS.gene91565:CDS |
| ACACACGGATCTTGACTAAC+GGG | 0.488417 | 7.1:-38612088 | None:intergenic |
| GCCACCAGAGTTCGTTGTAA+TGG | 0.489607 | 7.1:-38610346 | None:intergenic |
| GGTCGGGGATTGACCCGGTC+CGG | 0.495472 | 7.1:+38612151 | MS.gene91565:CDS |
| AAACAAAATGTGAGAGATGT+TGG | 0.496764 | 7.1:-38610285 | None:intergenic |
| CTTCCCCGACAACCTCGTTA+CGG | 0.497124 | 7.1:+38610601 | MS.gene91565:CDS |
| AATGTGAGGTGGTTTGTAAT+GGG | 0.497788 | 7.1:+38610560 | MS.gene91565:CDS |
| TTTGCCTCATTATTGGAAAG+AGG | 0.503193 | 7.1:+38612273 | MS.gene91565:CDS |
| CGATCCATAAAATACACAAC+CGG | 0.503463 | 7.1:-38612115 | None:intergenic |
| GTCTAGCCACACAAAGCCTC+TGG | 0.514460 | 7.1:-38610381 | None:intergenic |
| TTTAAATACACATGTTGGTA+CGG | 0.517569 | 7.1:+38610476 | MS.gene91565:CDS |
| CGGATCTTGACTAACGGGTC+GGG | 0.525035 | 7.1:-38612083 | None:intergenic |
| GTTGATTATAAGGTGGCTCA+TGG | 0.535895 | 7.1:+38612217 | MS.gene91565:CDS |
| AATCAAATGTACTATATTGG+AGG | 0.539448 | 7.1:+38610644 | MS.gene91565:CDS |
| CACACACGGATCTTGACTAA+CGG | 0.540512 | 7.1:-38612089 | None:intergenic |
| CATACCTCTTTCCAATAATG+AGG | 0.541220 | 7.1:-38612277 | None:intergenic |
| TCGGCGGCTCTTCAGCTACA+TGG | 0.555386 | 7.1:+38610312 | MS.gene91565:CDS |
| CCCTCCGCCGCCATAAGCCA+TGG | 0.563703 | 7.1:-38610708 | None:intergenic |
| ACGGATCTTGACTAACGGGT+CGG | 0.569910 | 7.1:-38612084 | None:intergenic |
| GTTCAGATTACCAAAGAACC+TGG | 0.570984 | 7.1:+38610851 | MS.gene91565:CDS |
| TACACAACCGGTTTCACACA+CGG | 0.573621 | 7.1:-38612103 | None:intergenic |
| CAACACCGTAACGAGGTTGT+CGG | 0.582802 | 7.1:-38610606 | None:intergenic |
| CCATGGCTTATGGCGGCGGA+GGG | 0.583286 | 7.1:+38610708 | MS.gene91565:CDS |
| CATCGTTTAAATACACATGT+TGG | 0.586906 | 7.1:+38610471 | MS.gene91565:CDS |
| CAATAATGAGGCAAAAGCAT+AGG | 0.587166 | 7.1:-38612265 | None:intergenic |
| GGTTATAAAAGATATGATGA+TGG | 0.594197 | 7.1:+38612172 | MS.gene91565:CDS |
| GTATTTAAACGATGACGTGT+CGG | 0.597903 | 7.1:-38610462 | None:intergenic |
| GAGATAATCAACAATGCAGA+TGG | 0.605004 | 7.1:+38613037 | MS.gene91565:CDS |
| GTGATCAATGTCAAAATCAG+AGG | 0.606553 | 7.1:+38613073 | MS.gene91565:CDS |
| GTCGCCATTACAACGAACTC+TGG | 0.608547 | 7.1:+38610342 | MS.gene91565:CDS |
| AATTAGGGTTAGATAATGTG+AGG | 0.609265 | 7.1:+38610546 | MS.gene91565:CDS |
| ATATGATGATGGTTCAGGGA+AGG | 0.617134 | 7.1:+38612183 | MS.gene91565:CDS |
| GAGGTTGTCGGGGAAGAAGA+CGG | 0.628561 | 7.1:-38610594 | None:intergenic |
| TTCAGGGAAGGAGTGTGACA+AGG | 0.630094 | 7.1:+38612195 | MS.gene91565:CDS |
| TAGGGTTAGATAATGTGAGG+TGG | 0.632426 | 7.1:+38610549 | MS.gene91565:CDS |
| AAAATGTGAGAGATGTTGGT+CGG | 0.638953 | 7.1:-38610281 | None:intergenic |
| TAGCCACACAAAGCCTCTGG+TGG | 0.644119 | 7.1:-38610378 | None:intergenic |
| ACACCGTAACGAGGTTGTCG+GGG | 0.648576 | 7.1:-38610604 | None:intergenic |
| ATTTCGACAACACCGTAACG+AGG | 0.653291 | 7.1:-38610613 | None:intergenic |
| ACACCACCAGAGGCTTTGTG+TGG | 0.653963 | 7.1:+38610375 | MS.gene91565:CDS |
| GCCATTACAACGAACTCTGG+TGG | 0.662160 | 7.1:+38610345 | MS.gene91565:CDS |
| TTTCCCAAACATTTAAAACG+TGG | 0.662282 | 7.1:+38612026 | MS.gene91565:CDS |
| TGACAAGGTTGATTATAAGG+TGG | 0.676439 | 7.1:+38612210 | MS.gene91565:CDS |
| TTTGTTGTAAATTTCTAACG+AGG | 0.679187 | 7.1:-38613121 | None:intergenic |
| TATAAGCTACCCTTTAGCGG+CGG | 0.683869 | 7.1:+38610736 | MS.gene91565:CDS |
| TGGCATCAAAACACCACCAG+AGG | 0.691489 | 7.1:+38610365 | MS.gene91565:CDS |
| TCGGGTATTAAAAGTAAATG+GGG | 0.708683 | 7.1:-38612065 | None:intergenic |
| TCGGCAGAGACTTTATATGG+TGG | 0.715015 | 7.1:-38610443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATCATACTAATAA+AGG | - | chr7.1:38611527-38611546 | None:intergenic | 10.0% |
| !! | ATTAACATAATAATTATATG+TGG | + | chr7.1:38612342-38612361 | MS.gene91565:intron | 10.0% |
| !! | TTAACATAATAATTATATGT+GGG | + | chr7.1:38612343-38612362 | MS.gene91565:intron | 10.0% |
| !!! | AGTTTTTAATTTAATTAATG+CGG | + | chr7.1:38612577-38612596 | MS.gene91565:intron | 10.0% |
| !!! | ATTTATTTGATTTTCTTTTT+TGG | - | chr7.1:38611492-38611511 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTAGAACATAATA+TGG | - | chr7.1:38611691-38611710 | None:intergenic | 10.0% |
| !!! | TTCTTTATTTTTATTACTAA+TGG | - | chr7.1:38612708-38612727 | None:intergenic | 10.0% |
| !! | ATAAAGAAAAAAGAACAAAT+TGG | - | chr7.1:38612315-38612334 | None:intergenic | 15.0% |
| !! | GAAACATAATATTAATTGAA+GGG | + | chr7.1:38611255-38611274 | MS.gene91565:intron | 15.0% |
| !! | TAAAGAAAAAAGAACAAATT+GGG | - | chr7.1:38612314-38612333 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr7.1:38611329-38611348 | MS.gene91565:intron | 15.0% |
| !!! | TAATTTTTGGAAAATGATAA+AGG | - | chr7.1:38612960-38612979 | None:intergenic | 15.0% |
| !! | AAAGATAGAAAATACTTGAA+CGG | - | chr7.1:38611156-38611175 | None:intergenic | 20.0% |
| !! | AGATTGAAATTTGGATTTAT+AGG | + | chr7.1:38612994-38613013 | MS.gene91565:intron | 20.0% |
| !! | CATAATCAAATGTACTATAT+TGG | + | chr7.1:38610641-38610660 | MS.gene91565:CDS | 20.0% |
| !! | CTTTAATGATAAATCAGAAA+AGG | + | chr7.1:38612834-38612853 | MS.gene91565:intron | 20.0% |
| !! | GGAAACATAATATTAATTGA+AGG | + | chr7.1:38611254-38611273 | MS.gene91565:intron | 20.0% |
| !! | GTTTATAACCATAAAAGATA+TGG | - | chr7.1:38611418-38611437 | None:intergenic | 20.0% |
| !!! | AAAAGGTAACTTTTGATTTA+TGG | + | chr7.1:38612851-38612870 | MS.gene91565:intron | 20.0% |
| !!! | AACATCTGAATCAAATTTTT+CGG | + | chr7.1:38610980-38610999 | MS.gene91565:intron | 20.0% |
| !!! | ATCATCATATCTTTTATAAC+CGG | - | chr7.1:38612173-38612192 | None:intergenic | 20.0% |
| !!! | CTTTTCTGATTTATCATTAA+AGG | - | chr7.1:38612836-38612855 | None:intergenic | 20.0% |
| !!! | TAAACGTATGATCTTTATTT+TGG | + | chr7.1:38612431-38612450 | MS.gene91565:intron | 20.0% |
| !!! | TACACTAATTTTCTCAAATT+AGG | - | chr7.1:38612641-38612660 | None:intergenic | 20.0% |
| !!! | TAGTTGCTAATATTTCATTT+TGG | + | chr7.1:38612510-38612529 | MS.gene91565:intron | 20.0% |
| !!! | TTTAATTTAATTAATGCGGA+TGG | + | chr7.1:38612581-38612600 | MS.gene91565:intron | 20.0% |
| ! | AAATGTTAATGAGTGTTCTA+AGG | + | chr7.1:38612775-38612794 | MS.gene91565:intron | 25.0% |
| ! | AAGATAGAAAATACTTGAAC+GGG | - | chr7.1:38611155-38611174 | None:intergenic | 25.0% |
| ! | AATCAAATGTACTATATTGG+AGG | + | chr7.1:38610644-38610663 | MS.gene91565:CDS | 25.0% |
| ! | AATCGTTATTCTGAGTATTA+TGG | + | chr7.1:38610788-38610807 | MS.gene91565:CDS | 25.0% |
| ! | ATCCAAATTTCAATCTAGTT+AGG | - | chr7.1:38612990-38613009 | None:intergenic | 25.0% |
| ! | ATTGGTCAATATCAATATCA+TGG | + | chr7.1:38611948-38611967 | MS.gene91565:intron | 25.0% |
| ! | GGTTATAAAAGATATGATGA+TGG | + | chr7.1:38612172-38612191 | MS.gene91565:CDS | 25.0% |
| ! | GTTGTCAAACTTACTATTTA+TGG | - | chr7.1:38612814-38612833 | None:intergenic | 25.0% |
| ! | TCAAAATAAAACTACCAGTT+TGG | + | chr7.1:38611598-38611617 | MS.gene91565:intron | 25.0% |
| ! | TTGGTCAATATCAATATCAT+GGG | + | chr7.1:38611949-38611968 | MS.gene91565:intron | 25.0% |
| ! | TTTAAATACACATGTTGGTA+CGG | + | chr7.1:38610476-38610495 | MS.gene91565:CDS | 25.0% |
| !! | GTTAGGCACTAATTAATTTT+TGG | - | chr7.1:38612973-38612992 | None:intergenic | 25.0% |
| !! | TCTAACTACCATTTTAGATT+CGG | + | chr7.1:38611575-38611594 | MS.gene91565:intron | 25.0% |
| !!! | ATATTGACCAATTTTTTGAG+TGG | - | chr7.1:38611940-38611959 | None:intergenic | 25.0% |
| !!! | TATTTTGACCGAATCTAAAA+TGG | - | chr7.1:38611586-38611605 | None:intergenic | 25.0% |
| !!! | TGAAAGAGAGTTTTGAATTA+GGG | + | chr7.1:38610531-38610550 | MS.gene91565:CDS | 25.0% |
| AAAACCCTAATCATAGAATC+TGG | + | chr7.1:38610245-38610264 | MS.gene91565:CDS | 30.0% | |
| AAACAAAATGTGAGAGATGT+TGG | - | chr7.1:38610288-38610307 | None:intergenic | 30.0% | |
| AATTAGGGTTAGATAATGTG+AGG | + | chr7.1:38610546-38610565 | MS.gene91565:CDS | 30.0% | |
| ATTACATCACTTAGACTATG+TGG | + | chr7.1:38611811-38611830 | MS.gene91565:intron | 30.0% | |
| CAAAGTTGCATTAGTGAAAT+TGG | + | chr7.1:38610827-38610846 | MS.gene91565:CDS | 30.0% | |
| CATCGTTTAAATACACATGT+TGG | + | chr7.1:38610471-38610490 | MS.gene91565:CDS | 30.0% | |
| GATTCAAACTCTATCATTTG+AGG | + | chr7.1:38612365-38612384 | MS.gene91565:intron | 30.0% | |
| GTCGGGTATTAAAAGTAAAT+GGG | - | chr7.1:38612069-38612088 | None:intergenic | 30.0% | |
| TCGGGTATTAAAAGTAAATG+GGG | - | chr7.1:38612068-38612087 | None:intergenic | 30.0% | |
| TGCCTAACTAGATTGAAATT+TGG | + | chr7.1:38612985-38613004 | MS.gene91565:intron | 30.0% | |
| TGGTCAATATCAATATCATG+GGG | + | chr7.1:38611950-38611969 | MS.gene91565:intron | 30.0% | |
| TTAGATCAAGTAATCCAAAC+TGG | - | chr7.1:38611615-38611634 | None:intergenic | 30.0% | |
| ! | AAAATGTTGATAAGTGTCCT+CGG | + | chr7.1:38612726-38612745 | MS.gene91565:intron | 30.0% |
| ! | AAACGACACTCATTTTGAAT+CGG | + | chr7.1:38611355-38611374 | MS.gene91565:intron | 30.0% |
| ! | AACATCTCTCACATTTTGTT+TGG | + | chr7.1:38610287-38610306 | MS.gene91565:CDS | 30.0% |
| ! | GATTCTATGATTAGGGTTTT+CGG | - | chr7.1:38610245-38610264 | None:intergenic | 30.0% |
| ! | GTTTTCGACCATATCTTTTA+TGG | + | chr7.1:38611407-38611426 | MS.gene91565:intron | 30.0% |
| ! | TATTTTATGGATCGGATTGA+GGG | + | chr7.1:38612124-38612143 | MS.gene91565:CDS | 30.0% |
| ! | TCTTTAGCTGTTGGTAAATA+GGG | - | chr7.1:38611995-38612014 | None:intergenic | 30.0% |
| ! | TGTTGTACATTTTTACACCA+TGG | + | chr7.1:38610691-38610710 | MS.gene91565:CDS | 30.0% |
| ! | TTTCCCAAACATTTAAAACG+TGG | + | chr7.1:38612026-38612045 | MS.gene91565:CDS | 30.0% |
| !! | AAAAGATATGATGATGGTTC+AGG | + | chr7.1:38612178-38612197 | MS.gene91565:CDS | 30.0% |
| !! | AAAGATATGATGATGGTTCA+GGG | + | chr7.1:38612179-38612198 | MS.gene91565:CDS | 30.0% |
| !! | AAGTGACACTCATTTTGAAA+CGG | - | chr7.1:38611207-38611226 | None:intergenic | 30.0% |
| !! | CTTCCACGTTTTAAATGTTT+GGG | - | chr7.1:38612032-38612051 | None:intergenic | 30.0% |
| !! | TCTCACATTTTGTTTGGAAT+CGG | + | chr7.1:38610293-38610312 | MS.gene91565:CDS | 30.0% |
| !! | TCTTCCACGTTTTAAATGTT+TGG | - | chr7.1:38612033-38612052 | None:intergenic | 30.0% |
| !! | TTCAAAATGAATGTCGCTTT+CGG | - | chr7.1:38611318-38611337 | None:intergenic | 30.0% |
| !!! | AACTTTTGATTTATGGTCGA+GGG | + | chr7.1:38612858-38612877 | MS.gene91565:intron | 30.0% |
| !!! | GTGAAAGAGAGTTTTGAATT+AGG | + | chr7.1:38610530-38610549 | MS.gene91565:CDS | 30.0% |
| !!! | TAACTTTTGATTTATGGTCG+AGG | + | chr7.1:38612857-38612876 | MS.gene91565:intron | 30.0% |
| AAAATGTGAGAGATGTTGGT+CGG | - | chr7.1:38610284-38610303 | None:intergenic | 35.0% | |
| AAATGTACCTGATGAAAACC+AGG | - | chr7.1:38610872-38610891 | None:intergenic | 35.0% | |
| AACAGCTAAAGAGCTTGAAA+TGG | + | chr7.1:38612003-38612022 | MS.gene91565:intron | 35.0% | |
| AAGTGATGTAATGAGACCAA+TGG | - | chr7.1:38611803-38611822 | None:intergenic | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | + | chr7.1:38611233-38611252 | MS.gene91565:intron | 35.0% | |
| ATTTCAAGCTCTTTAGCTGT+TGG | - | chr7.1:38612004-38612023 | None:intergenic | 35.0% | |
| CATACCTCTTTCCAATAATG+AGG | - | chr7.1:38612280-38612299 | None:intergenic | 35.0% | |
| CGATCCATAAAATACACAAC+CGG | - | chr7.1:38612118-38612137 | None:intergenic | 35.0% | |
| GAGATAATCAACAATGCAGA+TGG | + | chr7.1:38613037-38613056 | MS.gene91565:CDS | 35.0% | |
| GCTATGACCACTCAAAAAAT+TGG | + | chr7.1:38611930-38611949 | MS.gene91565:intron | 35.0% | |
| GGTCATAGCAAAATGATTGT+TGG | - | chr7.1:38611919-38611938 | None:intergenic | 35.0% | |
| GGTCGGGTATTAAAAGTAAA+TGG | - | chr7.1:38612070-38612089 | None:intergenic | 35.0% | |
| GTATTTAAACGATGACGTGT+CGG | - | chr7.1:38610465-38610484 | None:intergenic | 35.0% | |
| GTGATCAATGTCAAAATCAG+AGG | + | chr7.1:38613073-38613092 | MS.gene91565:CDS | 35.0% | |
| TGTGTTTAGTGTCAGTTAAG+CGG | - | chr7.1:38612410-38612429 | None:intergenic | 35.0% | |
| TTAATGCAGCTAGATATACG+TGG | + | chr7.1:38611740-38611759 | MS.gene91565:intron | 35.0% | |
| TTCCTTAATCTGTGTGCAAT+TGG | - | chr7.1:38611233-38611252 | None:intergenic | 35.0% | |
| TTCGCCAGATTCTATGATTA+GGG | - | chr7.1:38610252-38610271 | None:intergenic | 35.0% | |
| TTTGCCTCATTATTGGAAAG+AGG | + | chr7.1:38612273-38612292 | MS.gene91565:CDS | 35.0% | |
| ! | AATGTGAGGTGGTTTGTAAT+GGG | + | chr7.1:38610560-38610579 | MS.gene91565:CDS | 35.0% |
| ! | ATATCTTTTATAACCGGACC+GGG | - | chr7.1:38612167-38612186 | None:intergenic | 35.0% |
| ! | CAATAATGAGGCAAAAGCAT+AGG | - | chr7.1:38612268-38612287 | None:intergenic | 35.0% |
| ! | CATATCTTTTATAACCGGAC+CGG | - | chr7.1:38612168-38612187 | None:intergenic | 35.0% |
| ! | CATTTAAAACGTGGAAGACT+TGG | + | chr7.1:38612035-38612054 | MS.gene91565:CDS | 35.0% |
| ! | CATTTTTACACCATGGCTTA+TGG | + | chr7.1:38610698-38610717 | MS.gene91565:CDS | 35.0% |
| ! | CGGTTGTGTATTTTATGGAT+CGG | + | chr7.1:38612116-38612135 | MS.gene91565:CDS | 35.0% |
| ! | CTATGCTTTTGCCTCATTAT+TGG | + | chr7.1:38612266-38612285 | MS.gene91565:CDS | 35.0% |
| ! | CTCTTTAGCTGTTGGTAAAT+AGG | - | chr7.1:38611996-38612015 | None:intergenic | 35.0% |
| ! | GAAACCGGTTGTGTATTTTA+TGG | + | chr7.1:38612111-38612130 | MS.gene91565:CDS | 35.0% |
| ! | GTATTTTATGGATCGGATTG+AGG | + | chr7.1:38612123-38612142 | MS.gene91565:CDS | 35.0% |
| ! | GTGTGACAAGGTTGATTATA+AGG | + | chr7.1:38612207-38612226 | MS.gene91565:CDS | 35.0% |
| ! | TAATGTGAGGTGGTTTGTAA+TGG | + | chr7.1:38610559-38610578 | MS.gene91565:CDS | 35.0% |
| ! | TGACAAGGTTGATTATAAGG+TGG | + | chr7.1:38612210-38612229 | MS.gene91565:CDS | 35.0% |
| ! | TGGTTATCAAGTTGTTGCTT+GGG | + | chr7.1:38612530-38612549 | MS.gene91565:intron | 35.0% |
| ! | TTGGTTATCAAGTTGTTGCT+TGG | + | chr7.1:38612529-38612548 | MS.gene91565:intron | 35.0% |
| AGCCAATTGCACACAGATTA+AGG | + | chr7.1:38611228-38611247 | MS.gene91565:intron | 40.0% | |
| CTGATGAAAACCAGGTTCTT+TGG | - | chr7.1:38610864-38610883 | None:intergenic | 40.0% | |
| CTTCGCCAGATTCTATGATT+AGG | - | chr7.1:38610253-38610272 | None:intergenic | 40.0% | |
| GAGAAGTCAAAACACTGTCT+AGG | - | chr7.1:38612901-38612920 | None:intergenic | 40.0% | |
| GATATACGTGGTAACCCTTA+TGG | + | chr7.1:38611752-38611771 | MS.gene91565:intron | 40.0% | |
| GTTCAGATTACCAAAGAACC+TGG | + | chr7.1:38610851-38610870 | MS.gene91565:CDS | 40.0% | |
| GTTGATTATAAGGTGGCTCA+TGG | + | chr7.1:38612217-38612236 | MS.gene91565:CDS | 40.0% | |
| TAGGGTTAGATAATGTGAGG+TGG | + | chr7.1:38610549-38610568 | MS.gene91565:CDS | 40.0% | |
| TGCTATAAGCTACCCTTTAG+CGG | + | chr7.1:38610733-38610752 | MS.gene91565:CDS | 40.0% | |
| ! | GACACTCATTTTGAATCGGA+GGG | + | chr7.1:38611359-38611378 | MS.gene91565:intron | 40.0% |
| ! | GAGCTTGTGAAGATTTTGGA+CGG | + | chr7.1:38610758-38610777 | MS.gene91565:CDS | 40.0% |
| ! | GGACTCGATTTTTCCAAACA+TGG | + | chr7.1:38611832-38611851 | MS.gene91565:intron | 40.0% |
| ! | TTATCAAGTTGTTGCTTGGG+TGG | + | chr7.1:38612533-38612552 | MS.gene91565:intron | 40.0% |
| ! | TTTTACACCATGGCTTATGG+CGG | + | chr7.1:38610701-38610720 | MS.gene91565:CDS | 40.0% |
| !! | AAACATGGATCGTGTTGACT+CGG | + | chr7.1:38611847-38611866 | MS.gene91565:intron | 40.0% |
| !! | ATATGATGATGGTTCAGGGA+AGG | + | chr7.1:38612183-38612202 | MS.gene91565:CDS | 40.0% |
| !! | CAAAGAACCTGGTTTTCATC+AGG | + | chr7.1:38610862-38610881 | MS.gene91565:intron | 40.0% |
| !! | CACATTTTGTTTGGAATCGG+CGG | + | chr7.1:38610296-38610315 | MS.gene91565:CDS | 40.0% |
| !! | CATGTTCAAGAGTGTCACTT+GGG | - | chr7.1:38612484-38612503 | None:intergenic | 40.0% |
| !! | TCATGTTCAAGAGTGTCACT+TGG | - | chr7.1:38612485-38612504 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr7.1:38611203-38611222 | None:intergenic | 40.0% |
| !!! | TGACACTCATTTTGAAACGG+AGG | - | chr7.1:38611204-38611223 | None:intergenic | 40.0% |
| AAACAATGTTCAAGCCACCG+AGG | - | chr7.1:38612746-38612765 | None:intergenic | 45.0% | |
| AATGAGACCAATGGTGCAAC+TGG | - | chr7.1:38611794-38611813 | None:intergenic | 45.0% | |
| ACACACGGATCTTGACTAAC+GGG | - | chr7.1:38612091-38612110 | None:intergenic | 45.0% | |
| ATCTCGCAGCATTGTCTTCT+TGG | - | chr7.1:38613022-38613041 | None:intergenic | 45.0% | |
| ATTTCGACAACACCGTAACG+AGG | - | chr7.1:38610616-38610635 | None:intergenic | 45.0% | |
| CACACACGGATCTTGACTAA+CGG | - | chr7.1:38612092-38612111 | None:intergenic | 45.0% | |
| GAGTCAACACGATCCATGTT+TGG | - | chr7.1:38611848-38611867 | None:intergenic | 45.0% | |
| GCTAGTAACCGCATCCAAAT+CGG | + | chr7.1:38611877-38611896 | MS.gene91565:intron | 45.0% | |
| TATAAGCTACCCTTTAGCGG+CGG | + | chr7.1:38610736-38610755 | MS.gene91565:CDS | 45.0% | |
| TCAAGATCCGTGTGTGAAAC+CGG | + | chr7.1:38612096-38612115 | MS.gene91565:CDS | 45.0% | |
| TCGGCAGAGACTTTATATGG+TGG | - | chr7.1:38610446-38610465 | None:intergenic | 45.0% | |
| ! | ATGGATCGGATTGAGGGTTT+TGG | + | chr7.1:38612130-38612149 | MS.gene91565:CDS | 45.0% |
| ! | ATGTTGATAAGTGTCCTCGG+TGG | + | chr7.1:38612729-38612748 | MS.gene91565:intron | 45.0% |
| ! | CGACACTCATTTTGAATCGG+AGG | + | chr7.1:38611358-38611377 | MS.gene91565:intron | 45.0% |
| ! | GTGCTGCTAGTAAGCCATAA+GGG | - | chr7.1:38611769-38611788 | None:intergenic | 45.0% |
| ! | GTGTCGGCAGAGACTTTATA+TGG | - | chr7.1:38610449-38610468 | None:intergenic | 45.0% |
| ! | TACACAACCGGTTTCACACA+CGG | - | chr7.1:38612106-38612125 | None:intergenic | 45.0% |
| ! | TGATTAGGGTTTTCGGAGTG+CGG | - | chr7.1:38610238-38610257 | None:intergenic | 45.0% |
| ! | TGTGCTGCTAGTAAGCCATA+AGG | - | chr7.1:38611770-38611789 | None:intergenic | 45.0% |
| ! | TTATATGGTGGCGAAGTCTC+TGG | - | chr7.1:38610434-38610453 | None:intergenic | 45.0% |
| !! | ATCGGATTGAGGGTTTTGGT+CGG | + | chr7.1:38612134-38612153 | MS.gene91565:CDS | 45.0% |
| !! | CAATTAATAATAAATATTAA+TGG | - | chr7.1:38611056-38611075 | None:intergenic | 5.0% |
| !!! | AAAACTTAATTTTAAATTAT+AGG | - | chr7.1:38612563-38612582 | None:intergenic | 5.0% |
| !!! | ATTTTATTTTTACAAATTAT+TGG | + | chr7.1:38610950-38610969 | MS.gene91565:intron | 5.0% |
| AACACCGTAACGAGGTTGTC+GGG | - | chr7.1:38610608-38610627 | None:intergenic | 50.0% | |
| AACCGCATCCAAATCGGATC+CGG | + | chr7.1:38611883-38611902 | MS.gene91565:intron | 50.0% | |
| AGCACATCCAGTTGCACCAT+TGG | + | chr7.1:38611784-38611803 | MS.gene91565:intron | 50.0% | |
| AGCCGTCTAAAAACGAGACG+TGG | + | chr7.1:38610408-38610427 | MS.gene91565:CDS | 50.0% | |
| CAACACCGTAACGAGGTTGT+CGG | - | chr7.1:38610609-38610628 | None:intergenic | 50.0% | |
| GATTGTTGGATAGTCCGACC+CGG | - | chr7.1:38611905-38611924 | None:intergenic | 50.0% | |
| GCCACCAGAGTTCGTTGTAA+TGG | - | chr7.1:38610349-38610368 | None:intergenic | 50.0% | |
| GCCATTACAACGAACTCTGG+TGG | + | chr7.1:38610345-38610364 | MS.gene91565:CDS | 50.0% | |
| GTCGCCATTACAACGAACTC+TGG | + | chr7.1:38610342-38610361 | MS.gene91565:CDS | 50.0% | |
| TGGCATCAAAACACCACCAG+AGG | + | chr7.1:38610365-38610384 | MS.gene91565:CDS | 50.0% | |
| ! | ACGGATCTTGACTAACGGGT+CGG | - | chr7.1:38612087-38612106 | None:intergenic | 50.0% |
| ! | GATTAGGGTTTTCGGAGTGC+GGG | - | chr7.1:38610237-38610256 | None:intergenic | 50.0% |
| ! | GGCGGAGCTTGTGAAGATTT+TGG | + | chr7.1:38610754-38610773 | MS.gene91565:CDS | 50.0% |
| ! | TTCAGGGAAGGAGTGTGACA+AGG | + | chr7.1:38612195-38612214 | MS.gene91565:CDS | 50.0% |
| !! | GGCCACGTCTCGTTTTTAGA+CGG | - | chr7.1:38610413-38610432 | None:intergenic | 50.0% |
| !! | GTTCAAGAGTGTCACTTGGG+TGG | - | chr7.1:38612481-38612500 | None:intergenic | 50.0% |
| !! | TCGGATTGAGGGTTTTGGTC+GGG | + | chr7.1:38612135-38612154 | MS.gene91565:CDS | 50.0% |
| ACACCGTAACGAGGTTGTCG+GGG | - | chr7.1:38610607-38610626 | None:intergenic | 55.0% | |
| ACCGCATCCAAATCGGATCC+GGG | + | chr7.1:38611884-38611903 | MS.gene91565:intron | 55.0% | |
| CATCCAAATCGGATCCGGGT+CGG | + | chr7.1:38611888-38611907 | MS.gene91565:intron | 55.0% | |
| CTTCCCCGACAACCTCGTTA+CGG | + | chr7.1:38610601-38610620 | MS.gene91565:CDS | 55.0% | |
| GAGGTTGTCGGGGAAGAAGA+CGG | - | chr7.1:38610597-38610616 | None:intergenic | 55.0% | |
| GTCTAGCCACACAAAGCCTC+TGG | - | chr7.1:38610384-38610403 | None:intergenic | 55.0% | |
| TACACCATGGCTTATGGCGG+CGG | + | chr7.1:38610704-38610723 | MS.gene91565:CDS | 55.0% | |
| TAGCCACACAAAGCCTCTGG+TGG | - | chr7.1:38610381-38610400 | None:intergenic | 55.0% | |
| TCACAAGCTCCGCCGCTAAA+GGG | - | chr7.1:38610748-38610767 | None:intergenic | 55.0% | |
| TTCACAAGCTCCGCCGCTAA+AGG | - | chr7.1:38610749-38610768 | None:intergenic | 55.0% | |
| ! | ACACCACCAGAGGCTTTGTG+TGG | + | chr7.1:38610375-38610394 | MS.gene91565:CDS | 55.0% |
| ! | CGGATCTTGACTAACGGGTC+GGG | - | chr7.1:38612086-38612105 | None:intergenic | 55.0% |
| !! | ACCCGGATCCGATTTGGATG+CGG | - | chr7.1:38611888-38611907 | None:intergenic | 55.0% |
| !! | CGGATTGAGGGTTTTGGTCG+GGG | + | chr7.1:38612136-38612155 | MS.gene91565:CDS | 55.0% |
| !! | GTTTTGGTCGGGGATTGACC+CGG | + | chr7.1:38612146-38612165 | MS.gene91565:CDS | 55.0% |
| AGTCCGACCCGGATCCGATT+TGG | - | chr7.1:38611894-38611913 | None:intergenic | 60.0% | |
| TCGGCGGCTCTTCAGCTACA+TGG | + | chr7.1:38610312-38610331 | MS.gene91565:CDS | 60.0% | |
| ! | GGGTTTTCGGAGTGCGGGTT+TGG | - | chr7.1:38610232-38610251 | None:intergenic | 60.0% |
| ACCATGGCTTATGGCGGCGG+AGG | + | chr7.1:38610707-38610726 | MS.gene91565:CDS | 65.0% | |
| CCATGGCTTATGGCGGCGGA+GGG | + | chr7.1:38610708-38610727 | MS.gene91565:CDS | 65.0% | |
| CCCTCCGCCGCCATAAGCCA+TGG | - | chr7.1:38610711-38610730 | None:intergenic | 70.0% | |
| GGTCGGGGATTGACCCGGTC+CGG | + | chr7.1:38612151-38612170 | MS.gene91565:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 38610224 | 38613129 | 38610224 | ID=MS.gene91565 |
| chr7.1 | mRNA | 38610224 | 38613129 | 38610224 | ID=MS.gene91565.t1;Parent=MS.gene91565 |
| chr7.1 | exon | 38610224 | 38610872 | 38610224 | ID=MS.gene91565.t1.exon1;Parent=MS.gene91565.t1 |
| chr7.1 | CDS | 38610224 | 38610872 | 38610224 | ID=cds.MS.gene91565.t1;Parent=MS.gene91565.t1 |
| chr7.1 | exon | 38612008 | 38612294 | 38612008 | ID=MS.gene91565.t1.exon2;Parent=MS.gene91565.t1 |
| chr7.1 | CDS | 38612008 | 38612294 | 38612008 | ID=cds.MS.gene91565.t1;Parent=MS.gene91565.t1 |
| chr7.1 | exon | 38613016 | 38613129 | 38613016 | ID=MS.gene91565.t1.exon3;Parent=MS.gene91565.t1 |
| chr7.1 | CDS | 38613016 | 38613129 | 38613016 | ID=cds.MS.gene91565.t1;Parent=MS.gene91565.t1 |
| Gene Sequence |
| Protein sequence |
