Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91825.t1 | XP_003626704.2 | 91.1 | 302 | 20 | 3 | 1 | 301 | 64 | 359 | 3.20E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91825.t1 | Q9M0B8 | 43.1 | 299 | 161 | 2 | 7 | 296 | 59 | 357 | 2.8e-59 | 230.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91825.t1 | G7LBK8 | 91.1 | 302 | 20 | 3 | 1 | 301 | 64 | 359 | 2.3e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055334 | MS.gene91825 | 0.87659 | 1.24E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91825.t1 | MTR_8g006090 | 95.349 | 43 | 2 | 0 | 197 | 239 | 174 | 216 | 3.73e-20 | 87.0 |
| MS.gene91825.t1 | MTR_8g006090 | 95.349 | 43 | 2 | 0 | 197 | 239 | 254 | 296 | 6.97e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTATTCCTTAAATTTA+AGG | 0.107153 | 8.3:-81817799 | MS.gene91825:CDS |
| CTTGGATGTCTGTCTCTTCT+TGG | 0.151616 | 8.3:-81816736 | MS.gene91825:CDS |
| GTCTCATTAACCATAGATTT+TGG | 0.153005 | 8.3:+81813805 | None:intergenic |
| TATAATTGTTCCCACTATTT+TGG | 0.158416 | 8.3:+81816879 | None:intergenic |
| TTATTCATCACCTCACTAAT+TGG | 0.166165 | 8.3:-81817764 | MS.gene91825:CDS |
| TGCACAAAGTGATATGTAAT+TGG | 0.184770 | 8.3:+81814421 | None:intergenic |
| TGGTTTGTATATTGTACTTT+GGG | 0.221964 | 8.3:-81813869 | MS.gene91825:CDS |
| CACAATAATTTGTACTGTAT+TGG | 0.284384 | 8.3:-81814083 | MS.gene91825:CDS |
| TTCTTGGATGCATTGTTGCT+TGG | 0.293997 | 8.3:-81816720 | MS.gene91825:CDS |
| AGAGGAAGTGAAAATTGATT+TGG | 0.299737 | 8.3:-81813782 | MS.gene91825:CDS |
| AATTAATCTTCCATGCATTA+AGG | 0.305242 | 8.3:+81814339 | None:intergenic |
| TCTTGGATGCATTGTTGCTT+GGG | 0.331416 | 8.3:-81816719 | MS.gene91825:CDS |
| TATTCTGCATTTAGTAGCTT+TGG | 0.332419 | 8.3:+81816817 | None:intergenic |
| TTGGTTTGTATATTGTACTT+TGG | 0.366744 | 8.3:-81813870 | MS.gene91825:CDS |
| CATGTATGTTATAGCTTGAT+AGG | 0.374262 | 8.3:-81813910 | MS.gene91825:intron |
| GAAGATAGTTCCAAAATCTA+TGG | 0.375558 | 8.3:-81813815 | MS.gene91825:CDS |
| TATTTCCTCATGAAGCAAAA+TGG | 0.415481 | 8.3:+81814057 | None:intergenic |
| TCAATCATGGCCACAACCTT+GGG | 0.417804 | 8.3:-81816778 | MS.gene91825:CDS |
| GAGAACTATAGCCAAAATAG+TGG | 0.417858 | 8.3:-81816890 | MS.gene91825:CDS |
| TATTCATCACCTCACTAATT+GGG | 0.429304 | 8.3:-81817763 | MS.gene91825:intron |
| ATCTTCCATGCATTAAGGTC+TGG | 0.430798 | 8.3:+81814344 | None:intergenic |
| TTTGTAATAGCAGCCTTAGT+AGG | 0.434206 | 8.3:-81817024 | MS.gene91825:CDS |
| GGTGCAATTGGAGTGATCAT+TGG | 0.438089 | 8.3:-81813889 | MS.gene91825:CDS |
| GTACAAATTATTGTGAAAAC+AGG | 0.442998 | 8.3:+81814091 | None:intergenic |
| ATCAATCATGGCCACAACCT+TGG | 0.447093 | 8.3:-81816779 | MS.gene91825:CDS |
| TTCAAGCATGGTGCATTTCA+AGG | 0.449157 | 8.3:-81814144 | MS.gene91825:CDS |
| TATAGCTTGATAGGTGCAAT+TGG | 0.462823 | 8.3:-81813901 | MS.gene91825:intron |
| AGTATCTATTGCATTGTTGA+AGG | 0.465625 | 8.3:-81816842 | MS.gene91825:CDS |
| CCTTGGGAAGTGATGAGAAT+TGG | 0.468318 | 8.3:-81816762 | MS.gene91825:CDS |
| TGTGACTGCTGGAAGAAGAT+TGG | 0.474246 | 8.3:+81817047 | None:intergenic |
| TTATTCTAAGTAGAGTCATC+TGG | 0.482290 | 8.3:+81813745 | None:intergenic |
| CTCATCACTTCCCAAGGTTG+TGG | 0.492623 | 8.3:+81816768 | None:intergenic |
| GCACAAAGTGATATGTAATT+GGG | 0.510073 | 8.3:+81814422 | None:intergenic |
| TTGGGATGACTTGCATAAGC+TGG | 0.512749 | 8.3:+81814440 | None:intergenic |
| ATTACATATCACTTTGTGCA+TGG | 0.514897 | 8.3:-81814418 | MS.gene91825:CDS |
| GCTATTACAAATGTGACTGC+TGG | 0.515370 | 8.3:+81817036 | None:intergenic |
| GACTAGTAATTACCCTACTA+AGG | 0.515800 | 8.3:+81817011 | None:intergenic |
| TGCTGGAAGAAGATTGGAAA+TGG | 0.517028 | 8.3:+81817053 | None:intergenic |
| ATTACCTTCAAAATCAATCA+TGG | 0.519905 | 8.3:-81816791 | MS.gene91825:CDS |
| GTAGAGTCATCTGGTAAAAG+AGG | 0.523872 | 8.3:+81813754 | None:intergenic |
| CAGCGCTACCAAGTTGAAGT+AGG | 0.525332 | 8.3:+81814315 | None:intergenic |
| AGTGATGAGAATTGGTTGCT+TGG | 0.525946 | 8.3:-81816754 | MS.gene91825:CDS |
| TTGTAATAGCAGCCTTAGTA+GGG | 0.526679 | 8.3:-81817023 | MS.gene91825:intron |
| GGAACAATTATATGTGTAAG+TGG | 0.530656 | 8.3:-81816868 | MS.gene91825:CDS |
| CCAATTCTCATCACTTCCCA+AGG | 0.553764 | 8.3:+81816762 | None:intergenic |
| GTATCTATTGCATTGTTGAA+GGG | 0.561664 | 8.3:-81816841 | MS.gene91825:CDS |
| CTTCATGAGGAAATATACGT+TGG | 0.565456 | 8.3:-81814049 | MS.gene91825:CDS |
| ATTAATTCCCTACTTCAACT+TGG | 0.571381 | 8.3:-81814323 | MS.gene91825:CDS |
| GGTTTGTATATTGTACTTTG+GGG | 0.583776 | 8.3:-81813868 | MS.gene91825:CDS |
| ATGAGGAAATATACGTTGGA+AGG | 0.583813 | 8.3:-81814045 | MS.gene91825:intron |
| TAGAGCCAGACCTTAATGCA+TGG | 0.585991 | 8.3:-81814349 | MS.gene91825:CDS |
| TAATATACTGTCTTCAAGCA+TGG | 0.591380 | 8.3:-81814156 | MS.gene91825:CDS |
| AGCGCTACCAAGTTGAAGTA+GGG | 0.593953 | 8.3:+81814316 | None:intergenic |
| AGAACTATAGCCAAAATAGT+GGG | 0.616313 | 8.3:-81816889 | MS.gene91825:CDS |
| ATCTATGGTTAATGAGACAG+AGG | 0.628100 | 8.3:-81813800 | MS.gene91825:CDS |
| GTAAACATAGCAGAGAAGAG+AGG | 0.639250 | 8.3:+81814115 | None:intergenic |
| GCATGGTGCATTTCAAGGAG+AGG | 0.640869 | 8.3:-81814139 | MS.gene91825:CDS |
| GGAAACAAACCCAATTAGTG+AGG | 0.653573 | 8.3:+81817754 | None:intergenic |
| TAGTGAGGTGATGAATAACA+AGG | 0.667455 | 8.3:+81817769 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATCTATATTTGA+TGG | + | chr8.3:81815078-81815097 | None:intergenic | 10.0% |
| !! | TTAGTTAGATTAATAATAAT+TGG | + | chr8.3:81817615-81817634 | None:intergenic | 10.0% |
| !!! | AATCAAAATTTATATTTTGA+GGG | - | chr8.3:81814452-81814471 | MS.gene91825:intron | 10.0% |
| !!! | ATACTAGTTAATATTTTATA+TGG | + | chr8.3:81816459-81816478 | None:intergenic | 10.0% |
| !! | AAAAAAATTTCTTCCTAAAA+TGG | - | chr8.3:81815773-81815792 | MS.gene91825:intron | 15.0% |
| !! | AAAGGATGATATTATAAATA+TGG | + | chr8.3:81817011-81817030 | None:intergenic | 15.0% |
| !! | AAATTGAATATATTACAGAA+TGG | - | chr8.3:81814625-81814644 | MS.gene91825:intron | 15.0% |
| !! | ATGTTAGAAAAGAATAATTA+AGG | + | chr8.3:81815186-81815205 | None:intergenic | 15.0% |
| !! | ATTATTTAGTCAAACAAAAA+AGG | + | chr8.3:81814051-81814070 | None:intergenic | 15.0% |
| !! | ATTGTAAAACGAATATAATT+TGG | - | chr8.3:81816303-81816322 | MS.gene91825:intron | 15.0% |
| !! | ATTTAAAGAATTGAAAAAAG+AGG | - | chr8.3:81816224-81816243 | MS.gene91825:intron | 15.0% |
| !! | GGAAAATTAATAAATAGTTA+AGG | - | chr8.3:81815370-81815389 | MS.gene91825:intron | 15.0% |
| !! | TTGTAAAACGAATATAATTT+GGG | - | chr8.3:81816304-81816323 | MS.gene91825:intron | 15.0% |
| !! | TTTAATGATAATAAATCAGT+AGG | - | chr8.3:81816722-81816741 | MS.gene91825:CDS | 15.0% |
| !!! | AAAATTATATGTCGTTTTTT+TGG | + | chr8.3:81815539-81815558 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTCTTCCTAAAA+TGG | - | chr8.3:81815610-81815629 | MS.gene91825:intron | 15.0% |
| !!! | AATTAATACATTATTTTGCA+GGG | - | chr8.3:81817364-81817383 | MS.gene91825:intron | 15.0% |
| !!! | ATATACTTTTATTGATGAAT+TGG | - | chr8.3:81814246-81814265 | MS.gene91825:intron | 15.0% |
| !!! | GAATCAAAATTTATATTTTG+AGG | - | chr8.3:81814451-81814470 | MS.gene91825:intron | 15.0% |
| !!! | TAATTAATACATTATTTTGC+AGG | - | chr8.3:81817363-81817382 | MS.gene91825:intron | 15.0% |
| !!! | TATACTTTTATTGATGAATT+GGG | - | chr8.3:81814247-81814266 | MS.gene91825:intron | 15.0% |
| !!! | TTTAAGGATTGATTTATTAA+AGG | + | chr8.3:81817029-81817048 | None:intergenic | 15.0% |
| !!! | TTTTTCCATATCATTTATTA+AGG | + | chr8.3:81816200-81816219 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGATTTGAAAGAA+TGG | - | chr8.3:81814160-81814179 | MS.gene91825:CDS | 15.0% |
| !! | AAATGACTAAAAAAATCTCA+AGG | + | chr8.3:81815129-81815148 | None:intergenic | 20.0% |
| !! | AAATGGCATATAATTAAGAA+TGG | - | chr8.3:81815627-81815646 | MS.gene91825:intron | 20.0% |
| !! | AAGAAAAAAACTACTGTATT+TGG | - | chr8.3:81813967-81813986 | MS.gene91825:intron | 20.0% |
| !! | AGAAAAAAACTACTGTATTT+GGG | - | chr8.3:81813968-81813987 | MS.gene91825:intron | 20.0% |
| !! | AGAGATAAAGATCAATATAT+AGG | - | chr8.3:81814993-81815012 | MS.gene91825:intron | 20.0% |
| !! | AGCTAACTTCAATATTTATA+GGG | - | chr8.3:81816814-81816833 | MS.gene91825:CDS | 20.0% |
| !! | ATTGTCCTTAATAAATAGTA+TGG | - | chr8.3:81815321-81815340 | MS.gene91825:intron | 20.0% |
| !! | ATTGTCCTTAATAAATGATA+TGG | - | chr8.3:81816192-81816211 | MS.gene91825:intron | 20.0% |
| !! | GAGATAAAGATCAATATATA+GGG | - | chr8.3:81814994-81815013 | MS.gene91825:intron | 20.0% |
| !! | TAGCTAACTTCAATATTTAT+AGG | - | chr8.3:81816813-81816832 | MS.gene91825:CDS | 20.0% |
| !! | TATGAGAAAATATGCATTTA+AGG | + | chr8.3:81817045-81817064 | None:intergenic | 20.0% |
| !! | TTCAATTAAAATAAACACCT+TGG | + | chr8.3:81814607-81814626 | None:intergenic | 20.0% |
| !! | TTTGATTGAGTAACAAAAAT+AGG | + | chr8.3:81814577-81814596 | None:intergenic | 20.0% |
| !!! | AAAAACGACATATAATTTTC+CGG | - | chr8.3:81815540-81815559 | MS.gene91825:intron | 20.0% |
| !!! | AAATCTATATTTGATGGTTA+TGG | + | chr8.3:81815072-81815091 | None:intergenic | 20.0% |
| !!! | CAAATTATATGTCGTTTTTT+TGG | + | chr8.3:81815586-81815605 | None:intergenic | 20.0% |
| !!! | CTTAACACAAATTGAATTTT+AGG | - | chr8.3:81817580-81817599 | MS.gene91825:intron | 20.0% |
| !!! | CTTTTCCATACTATTTATTA+AGG | + | chr8.3:81815329-81815348 | None:intergenic | 20.0% |
| !!! | GAATAGATTTTTTTTGTAAG+AGG | - | chr8.3:81814105-81814124 | MS.gene91825:CDS | 20.0% |
| !!! | TCTTAATTATATGCCATTTT+AGG | + | chr8.3:81815626-81815645 | None:intergenic | 20.0% |
| ! | AACCTGGTGAAAATTATAAA+GGG | + | chr8.3:81817100-81817119 | None:intergenic | 25.0% |
| ! | AATTAATCTTCCATGCATTA+AGG | + | chr8.3:81817224-81817243 | None:intergenic | 25.0% |
| ! | ACATAAAAATATGCAAAGTC+CGG | - | chr8.3:81815493-81815512 | MS.gene91825:intron | 25.0% |
| ! | ATTACCTTCAAAATCAATCA+TGG | - | chr8.3:81814769-81814788 | MS.gene91825:intron | 25.0% |
| ! | CAAAAGGTTTATGTCAAATA+TGG | - | chr8.3:81814908-81814927 | MS.gene91825:intron | 25.0% |
| ! | GAGGAAGTAATAAATAGTTA+AGG | - | chr8.3:81816243-81816262 | MS.gene91825:intron | 25.0% |
| ! | GCTCTTATTCCTTAAATTTA+AGG | - | chr8.3:81813761-81813780 | MS.gene91825:CDS | 25.0% |
| ! | GGAAAAACTCCTTAAATTTA+AGG | + | chr8.3:81813773-81813792 | None:intergenic | 25.0% |
| ! | GTACAAATTATTGTGAAAAC+AGG | + | chr8.3:81817472-81817491 | None:intergenic | 25.0% |
| ! | TAGAAAAGAATAATTAAGGC+AGG | + | chr8.3:81815182-81815201 | None:intergenic | 25.0% |
| ! | TGGTTAATAAGCTTAACAAA+AGG | + | chr8.3:81816611-81816630 | None:intergenic | 25.0% |
| ! | TGTCATACCAACATTATTAA+TGG | + | chr8.3:81815754-81815773 | None:intergenic | 25.0% |
| ! | TTCTTTGTCAAATTGATGAA+AGG | + | chr8.3:81814088-81814107 | None:intergenic | 25.0% |
| !! | AAAACGACATATAATTTTCC+GGG | - | chr8.3:81815541-81815560 | MS.gene91825:intron | 25.0% |
| !! | CACAATAATTTGTACTGTAT+TGG | - | chr8.3:81817477-81817496 | MS.gene91825:intron | 25.0% |
| !! | CATATAGGTGAAACAATTTT+TGG | + | chr8.3:81816559-81816578 | None:intergenic | 25.0% |
| !! | TAAAATGAGCAATTTTGCAT+TGG | - | chr8.3:81816877-81816896 | MS.gene91825:CDS | 25.0% |
| !! | TATAATTGTTCCCACTATTT+TGG | + | chr8.3:81814684-81814703 | None:intergenic | 25.0% |
| !! | TGGTTTGTATATTGTACTTT+GGG | - | chr8.3:81817691-81817710 | MS.gene91825:intron | 25.0% |
| !!! | ATTATATGTCGTTTTTTTGG+TGG | + | chr8.3:81815536-81815555 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTATATTGTACTT+TGG | - | chr8.3:81817690-81817709 | MS.gene91825:intron | 25.0% |
| AAAATTATAAAGGGAGGCAA+AGG | + | chr8.3:81817091-81817110 | None:intergenic | 30.0% | |
| ACTATGTGGTGCTTATATAA+TGG | - | chr8.3:81814345-81814364 | MS.gene91825:CDS | 30.0% | |
| AGAACTATAGCCAAAATAGT+GGG | - | chr8.3:81814671-81814690 | MS.gene91825:intron | 30.0% | |
| AGAGGAAGTGAAAATTGATT+TGG | - | chr8.3:81817778-81817797 | MS.gene91825:CDS | 30.0% | |
| AGTATCTATTGCATTGTTGA+AGG | - | chr8.3:81814718-81814737 | MS.gene91825:intron | 30.0% | |
| AGTGGAACCAACATTATTAA+TGG | + | chr8.3:81815925-81815944 | None:intergenic | 30.0% | |
| ATAAAAATATGCAAAGTCCG+GGG | - | chr8.3:81815495-81815514 | MS.gene91825:intron | 30.0% | |
| ATTAATGGCTTCTCAAATGA+TGG | + | chr8.3:81815910-81815929 | None:intergenic | 30.0% | |
| ATTAATGGCTTCTCAATGAT+GGG | + | chr8.3:81815739-81815758 | None:intergenic | 30.0% | |
| ATTAATTCCCTACTTCAACT+TGG | - | chr8.3:81817237-81817256 | MS.gene91825:intron | 30.0% | |
| ATTACATATCACTTTGTGCA+TGG | - | chr8.3:81817142-81817161 | MS.gene91825:intron | 30.0% | |
| CAAACAGATGGAGTAATAAA+AGG | - | chr8.3:81815686-81815705 | MS.gene91825:intron | 30.0% | |
| CATAAAAATATGCAAAGTCC+GGG | - | chr8.3:81815494-81815513 | MS.gene91825:intron | 30.0% | |
| CATGTATGTTATAGCTTGAT+AGG | - | chr8.3:81817650-81817669 | MS.gene91825:intron | 30.0% | |
| CCTAATTCATCGTTACAAAA+TGG | + | chr8.3:81816664-81816683 | None:intergenic | 30.0% | |
| CTAAATTATCAGCACAGTTA+TGG | + | chr8.3:81814006-81814025 | None:intergenic | 30.0% | |
| CTCAATCAAAATTCAAACCA+AGG | - | chr8.3:81814587-81814606 | MS.gene91825:intron | 30.0% | |
| GAACCTGGTGAAAATTATAA+AGG | + | chr8.3:81817101-81817120 | None:intergenic | 30.0% | |
| GCACAAAGTGATATGTAATT+GGG | + | chr8.3:81817141-81817160 | None:intergenic | 30.0% | |
| GGAACAATTATATGTGTAAG+TGG | - | chr8.3:81814692-81814711 | MS.gene91825:intron | 30.0% | |
| GGTTTGTATATTGTACTTTG+GGG | - | chr8.3:81817692-81817711 | MS.gene91825:intron | 30.0% | |
| GTAAATTACTAGAGAGAGAA+TGG | + | chr8.3:81813830-81813849 | None:intergenic | 30.0% | |
| GTATCTATTGCATTGTTGAA+GGG | - | chr8.3:81814719-81814738 | MS.gene91825:intron | 30.0% | |
| TAATATACTGTCTTCAAGCA+TGG | - | chr8.3:81817404-81817423 | MS.gene91825:intron | 30.0% | |
| TATTAATGGCTTCTCAATGA+TGG | + | chr8.3:81815740-81815759 | None:intergenic | 30.0% | |
| TATTCATCACCTCACTAATT+GGG | - | chr8.3:81813797-81813816 | MS.gene91825:CDS | 30.0% | |
| TATTCTGCATTTAGTAGCTT+TGG | + | chr8.3:81814746-81814765 | None:intergenic | 30.0% | |
| TATTTCCTCATGAAGCAAAA+TGG | + | chr8.3:81817506-81817525 | None:intergenic | 30.0% | |
| TCCAAAGCGACATATAATTT+GGG | - | chr8.3:81816338-81816357 | MS.gene91825:intron | 30.0% | |
| TGAGAAGCCATTAATAATGT+TGG | - | chr8.3:81815744-81815763 | MS.gene91825:intron | 30.0% | |
| TGCACAAAGTGATATGTAAT+TGG | + | chr8.3:81817142-81817161 | None:intergenic | 30.0% | |
| TTAATGGCTTCTCAAATGAT+GGG | + | chr8.3:81815909-81815928 | None:intergenic | 30.0% | |
| TTATTCATCACCTCACTAAT+TGG | - | chr8.3:81813796-81813815 | MS.gene91825:CDS | 30.0% | |
| TTCCAAAGCGACATATAATT+TGG | - | chr8.3:81816337-81816356 | MS.gene91825:intron | 30.0% | |
| ! | AAACGACATATAATTTTCCG+GGG | - | chr8.3:81815542-81815561 | MS.gene91825:intron | 30.0% |
| ! | CCATTTTGTAACGATGAATT+AGG | - | chr8.3:81816661-81816680 | MS.gene91825:intron | 30.0% |
| ! | GCATGTGTTGTTAGTAATTT+AGG | - | chr8.3:81816055-81816074 | MS.gene91825:intron | 30.0% |
| ! | GTCTCATTAACCATAGATTT+TGG | + | chr8.3:81817758-81817777 | None:intergenic | 30.0% |
| !! | ATTATTTTGCAGGGAGTTAT+GGG | - | chr8.3:81817373-81817392 | MS.gene91825:intron | 30.0% |
| !! | TTAATAATGTTGGTTCCACT+AGG | - | chr8.3:81815925-81815944 | MS.gene91825:intron | 30.0% |
| !!! | TAAAGTTTTGAGTGACTATG+TGG | - | chr8.3:81814331-81814350 | MS.gene91825:CDS | 30.0% |
| AAGCGACATATAATTTGGGA+CGG | - | chr8.3:81816342-81816361 | MS.gene91825:intron | 35.0% | |
| ACAAATGCTAACATGTGATC+TGG | - | chr8.3:81816030-81816049 | MS.gene91825:intron | 35.0% | |
| ACACGTCATATAACTTGAGA+CGG | + | chr8.3:81815226-81815245 | None:intergenic | 35.0% | |
| AGAACCTGAGTTTGACATAT+AGG | + | chr8.3:81816574-81816593 | None:intergenic | 35.0% | |
| AGCTAAATCACTAGGTTAAC+TGG | - | chr8.3:81816635-81816654 | MS.gene91825:intron | 35.0% | |
| AGGAAAAGACTCTGGTAATT+CGG | - | chr8.3:81816504-81816523 | MS.gene91825:intron | 35.0% | |
| ATCGATACTCTGACATCAAA+AGG | - | chr8.3:81814892-81814911 | MS.gene91825:intron | 35.0% | |
| ATCTATGGTTAATGAGACAG+AGG | - | chr8.3:81817760-81817779 | MS.gene91825:intron | 35.0% | |
| ATGAGGAAATATACGTTGGA+AGG | - | chr8.3:81817515-81817534 | MS.gene91825:intron | 35.0% | |
| ATTCTTAGAGGAAAAGACTC+TGG | - | chr8.3:81816496-81816515 | MS.gene91825:intron | 35.0% | |
| CTGGTGAAAATTATAAAGGG+AGG | + | chr8.3:81817097-81817116 | None:intergenic | 35.0% | |
| CTTCATGAGGAAATATACGT+TGG | - | chr8.3:81817511-81817530 | MS.gene91825:intron | 35.0% | |
| GACTAGTAATTACCCTACTA+AGG | + | chr8.3:81814552-81814571 | None:intergenic | 35.0% | |
| GAGAACTATAGCCAAAATAG+TGG | - | chr8.3:81814670-81814689 | MS.gene91825:intron | 35.0% | |
| GTTAACTCTCTGATTCTTAG+AGG | - | chr8.3:81816484-81816503 | MS.gene91825:intron | 35.0% | |
| TAGTGAGGTGATGAATAACA+AGG | + | chr8.3:81813794-81813813 | None:intergenic | 35.0% | |
| TATAGCTTGATAGGTGCAAT+TGG | - | chr8.3:81817659-81817678 | MS.gene91825:intron | 35.0% | |
| TCCTTAACATATGCCTTTGA+GGG | - | chr8.3:81816969-81816988 | MS.gene91825:intron | 35.0% | |
| TTCACCTATATGTCAAACTC+AGG | - | chr8.3:81816567-81816586 | MS.gene91825:intron | 35.0% | |
| TTCCTTAACATATGCCTTTG+AGG | - | chr8.3:81816968-81816987 | MS.gene91825:intron | 35.0% | |
| TTGTAATAGCAGCCTTAGTA+GGG | - | chr8.3:81814537-81814556 | MS.gene91825:intron | 35.0% | |
| TTTGTAATAGCAGCCTTAGT+AGG | - | chr8.3:81814536-81814555 | MS.gene91825:intron | 35.0% | |
| ! | CTCCCTTTATAATTTTCACC+AGG | - | chr8.3:81817095-81817114 | MS.gene91825:CDS | 35.0% |
| ! | GGCAATTTTTCTCATTTTGC+AGG | - | chr8.3:81814862-81814881 | MS.gene91825:intron | 35.0% |
| ! | TACTCCATCTGTTTGAAGTT+GGG | + | chr8.3:81815681-81815700 | None:intergenic | 35.0% |
| ! | TCCCAAATTATATGTCGCTT+TGG | + | chr8.3:81816342-81816361 | None:intergenic | 35.0% |
| ! | TTACTCCATCTGTTTGAAGT+TGG | + | chr8.3:81815682-81815701 | None:intergenic | 35.0% |
| ! | TTTTTCTGTCTATGTCCTAG+TGG | + | chr8.3:81815943-81815962 | None:intergenic | 35.0% |
| !! | CATTATTTTGCAGGGAGTTA+TGG | - | chr8.3:81817372-81817391 | MS.gene91825:intron | 35.0% |
| !!! | ATATGTCGTTTTTTTGGTGG+CGG | + | chr8.3:81815533-81815552 | None:intergenic | 35.0% |
| !!! | ATATGTCGTTTTTTTGGTGG+TGG | + | chr8.3:81815533-81815552 | None:intergenic | 35.0% |
| AACAAAAGGATGAGTCGTTC+AGG | + | chr8.3:81816597-81816616 | None:intergenic | 40.0% | |
| AAGACCCAACTTCAAACAGA+TGG | - | chr8.3:81815674-81815693 | MS.gene91825:intron | 40.0% | |
| ACCAGATGAGCTAAATCACT+AGG | - | chr8.3:81816627-81816646 | MS.gene91825:intron | 40.0% | |
| AGTGATGAGAATTGGTTGCT+TGG | - | chr8.3:81814806-81814825 | MS.gene91825:intron | 40.0% | |
| ATCTTCCATGCATTAAGGTC+TGG | + | chr8.3:81817219-81817238 | None:intergenic | 40.0% | |
| ATGCTCGCTTTATAGACACA+CGG | - | chr8.3:81814303-81814322 | MS.gene91825:intron | 40.0% | |
| CTACTGTATTTGGGCTGATT+TGG | - | chr8.3:81813977-81813996 | MS.gene91825:intron | 40.0% | |
| GCTATTACAAATGTGACTGC+TGG | + | chr8.3:81814527-81814546 | None:intergenic | 40.0% | |
| GGAAACAAACCCAATTAGTG+AGG | + | chr8.3:81813809-81813828 | None:intergenic | 40.0% | |
| GTAAACATAGCAGAGAAGAG+AGG | + | chr8.3:81817448-81817467 | None:intergenic | 40.0% | |
| GTAGAGTCATCTGGTAAAAG+AGG | + | chr8.3:81817809-81817828 | None:intergenic | 40.0% | |
| GTCAGTCTATACTTACCTCA+CGG | + | chr8.3:81816537-81816556 | None:intergenic | 40.0% | |
| TGCTGGAAGAAGATTGGAAA+TGG | + | chr8.3:81814510-81814529 | None:intergenic | 40.0% | |
| TTCAAGCATGGTGCATTTCA+AGG | - | chr8.3:81817416-81817435 | MS.gene91825:intron | 40.0% | |
| TTCCTTAACATGTGCCCTTA+GGG | + | chr8.3:81816855-81816874 | None:intergenic | 40.0% | |
| TTCTTGGATGCATTGTTGCT+TGG | - | chr8.3:81814840-81814859 | MS.gene91825:intron | 40.0% | |
| ! | ACCTAGTGATTTAGCTCATC+TGG | + | chr8.3:81816631-81816650 | None:intergenic | 40.0% |
| ! | TCTTGGATGCATTGTTGCTT+GGG | - | chr8.3:81814841-81814860 | MS.gene91825:intron | 40.0% |
| !! | ATGTTAACTTGTGCCCTCAA+AGG | + | chr8.3:81816985-81817004 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | - | chr8.3:81816838-81816857 | MS.gene91825:CDS | 40.0% |
| !! | CTCTACTAGCTCTACACATA+TGG | + | chr8.3:81816758-81816777 | None:intergenic | 40.0% |
| !! | GTGGCCATGATTGATTTTGA+AGG | + | chr8.3:81814776-81814795 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | - | chr8.3:81816837-81816856 | MS.gene91825:CDS | 40.0% |
| AGCGCTGTATATGCTGTATG+TGG | - | chr8.3:81817261-81817280 | MS.gene91825:intron | 45.0% | |
| ATAACTTGAGACGGAGTGAG+TGG | + | chr8.3:81815217-81815236 | None:intergenic | 45.0% | |
| ATCAATCATGGCCACAACCT+TGG | - | chr8.3:81814781-81814800 | MS.gene91825:intron | 45.0% | |
| CCAATTCTCATCACTTCCCA+AGG | + | chr8.3:81814801-81814820 | None:intergenic | 45.0% | |
| CCTTGGGAAGTGATGAGAAT+TGG | - | chr8.3:81814798-81814817 | MS.gene91825:intron | 45.0% | |
| CTTGGATGTCTGTCTCTTCT+TGG | - | chr8.3:81814824-81814843 | MS.gene91825:intron | 45.0% | |
| GACTCTGGTAATTCGGAGTT+CGG | - | chr8.3:81816511-81816530 | MS.gene91825:intron | 45.0% | |
| GGTGCAATTGGAGTGATCAT+TGG | - | chr8.3:81817671-81817690 | MS.gene91825:intron | 45.0% | |
| GTTCCTTAACATGTGCCCTT+AGG | + | chr8.3:81816856-81816875 | None:intergenic | 45.0% | |
| TAGAGCCAGACCTTAATGCA+TGG | - | chr8.3:81817211-81817230 | MS.gene91825:intron | 45.0% | |
| TCAATCATGGCCACAACCTT+GGG | - | chr8.3:81814782-81814801 | MS.gene91825:intron | 45.0% | |
| TGTGACTGCTGGAAGAAGAT+TGG | + | chr8.3:81814516-81814535 | None:intergenic | 45.0% | |
| ! | AATGGCTTCTCAATGATGGG+TGG | + | chr8.3:81815736-81815755 | None:intergenic | 45.0% |
| ! | AGCGCTACCAAGTTGAAGTA+GGG | + | chr8.3:81817247-81817266 | None:intergenic | 45.0% |
| ! | ATGGCTTCTCAAATGATGGG+TGG | + | chr8.3:81815906-81815925 | None:intergenic | 45.0% |
| ! | CGACATATAATTTGGGACGG+AGG | - | chr8.3:81816345-81816364 | MS.gene91825:intron | 45.0% |
| ! | GCCCTCAAAGGCATATGTTA+AGG | + | chr8.3:81816973-81816992 | None:intergenic | 45.0% |
| ! | TTGGGATGACTTGCATAAGC+TGG | + | chr8.3:81817123-81817142 | None:intergenic | 45.0% |
| !! | ATGGCTTCTCAATGATGGGT+GGG | + | chr8.3:81815735-81815754 | None:intergenic | 45.0% |
| !! | TGGCTTCTCAAATGATGGGT+GGG | + | chr8.3:81815905-81815924 | None:intergenic | 45.0% |
| !! | AAATAACATTAATAATTTAT+TGG | - | chr8.3:81815405-81815424 | MS.gene91825:intron | 5.0% |
| !! | ATTAATTAAATAATTGAAAA+AGG | - | chr8.3:81815349-81815368 | MS.gene91825:intron | 5.0% |
| CTCATCACTTCCCAAGGTTG+TGG | + | chr8.3:81814795-81814814 | None:intergenic | 50.0% | |
| GACTTGCATAAGCTGGAACC+TGG | + | chr8.3:81817116-81817135 | None:intergenic | 50.0% | |
| GCATGGTGCATTTCAAGGAG+AGG | - | chr8.3:81817421-81817440 | MS.gene91825:intron | 50.0% | |
| ! | ATTTTCCGGGGTTCGAATCC+CGG | - | chr8.3:81815554-81815573 | MS.gene91825:intron | 50.0% |
| ! | CAGCGCTACCAAGTTGAAGT+AGG | + | chr8.3:81817248-81817267 | None:intergenic | 50.0% |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr8.3:81816850-81816869 | MS.gene91825:CDS | 50.0% |
| !! | GGCTTCTCAAATGATGGGTG+GGG | + | chr8.3:81815904-81815923 | None:intergenic | 50.0% |
| !! | TGGCTTCTCAATGATGGGTG+GGG | + | chr8.3:81815734-81815753 | None:intergenic | 50.0% |
| !!! | GGCTGCCATTTTGCTTCATG+AGG | - | chr8.3:81817498-81817517 | MS.gene91825:intron | 50.0% |
| !!! | GTCGTTTTTTTGGTGGTGGC+CGG | + | chr8.3:81815576-81815595 | None:intergenic | 50.0% |
| !!! | TCGTTTTTTTGGTGGCGGCT+GGG | + | chr8.3:81815528-81815547 | None:intergenic | 50.0% |
| !!! | TCGTTTTTTTGGTGGTGGCC+GGG | + | chr8.3:81815575-81815594 | None:intergenic | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr8.3:81815456-81815475 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr8.3:81815453-81815472 | MS.gene91825:intron | 55.0% | |
| TAATTCGGAGTTCGGCCGTG+AGG | - | chr8.3:81816519-81816538 | MS.gene91825:intron | 55.0% | |
| !!! | GTCGTTTTTTTGGTGGCGGC+TGG | + | chr8.3:81815529-81815548 | None:intergenic | 55.0% |
| GGCGGCTGGGATTCGAACCC+CGG | + | chr8.3:81815515-81815534 | None:intergenic | 70.0% | |
| GGTGGCCGGGATTCGAACCC+CGG | + | chr8.3:81815562-81815581 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 81813750 | 81817832 | 81813750 | ID=MS.gene91825 |
| chr8.3 | mRNA | 81813750 | 81817832 | 81813750 | ID=MS.gene91825.t1;Parent=MS.gene91825 |
| chr8.3 | exon | 81817764 | 81817832 | 81817764 | ID=MS.gene91825.t1.exon1;Parent=MS.gene91825.t1 |
| chr8.3 | CDS | 81817764 | 81817832 | 81817764 | ID=cds.MS.gene91825.t1;Parent=MS.gene91825.t1 |
| chr8.3 | exon | 81817024 | 81817140 | 81817024 | ID=MS.gene91825.t1.exon2;Parent=MS.gene91825.t1 |
| chr8.3 | CDS | 81817024 | 81817140 | 81817024 | ID=cds.MS.gene91825.t1;Parent=MS.gene91825.t1 |
| chr8.3 | exon | 81816699 | 81816939 | 81816699 | ID=MS.gene91825.t1.exon3;Parent=MS.gene91825.t1 |
| chr8.3 | CDS | 81816699 | 81816939 | 81816699 | ID=cds.MS.gene91825.t1;Parent=MS.gene91825.t1 |
| chr8.3 | exon | 81814307 | 81814465 | 81814307 | ID=MS.gene91825.t1.exon4;Parent=MS.gene91825.t1 |
| chr8.3 | CDS | 81814307 | 81814465 | 81814307 | ID=cds.MS.gene91825.t1;Parent=MS.gene91825.t1 |
| chr8.3 | exon | 81814046 | 81814197 | 81814046 | ID=MS.gene91825.t1.exon5;Parent=MS.gene91825.t1 |
| chr8.3 | CDS | 81814046 | 81814197 | 81814046 | ID=cds.MS.gene91825.t1;Parent=MS.gene91825.t1 |
| chr8.3 | exon | 81813750 | 81813918 | 81813750 | ID=MS.gene91825.t1.exon6;Parent=MS.gene91825.t1 |
| chr8.3 | CDS | 81813750 | 81813918 | 81813750 | ID=cds.MS.gene91825.t1;Parent=MS.gene91825.t1 |
| Gene Sequence |
| Protein sequence |
