AlfalfaGEDB | MS.gene91948

M. sativa cultivar XinJiangDaYe / MS.gene91948

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91948.t1	XP_003613590.1	97.6	492	12	0	1	492	1	492	4.50E-268	933.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91948.t1	Q9LFP7	76.9	450	91	5	44	487	47	489	9.1e-185	647.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91948.t1	G7K9S7	97.6	492	12	0	1	492	1	492	3.3e-268	933.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006974	MS.gene91948	PPI
MS.gene02160	MS.gene91948	PPI
MS.gene02843	MS.gene91948	PPI
MS.gene048313	MS.gene91948	PPI
MS.gene91948	MS.gene003186	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91948.t1	MTR_5g038450	98.171	492	9	0	1	492	1	492	0.0	1008
MS.gene91948.t1	MTR_8g469230	84.725	491	67	4	4	492	3	487	0.0	828
MS.gene91948.t1	MTR_7g009320	74.172	453	112	4	37	488	26	474	0.0	692
MS.gene91948.t1	MTR_6g011330	69.000	500	125	5	4	490	3	485	0.0	666
MS.gene91948.t1	MTR_4g115120	63.614	404	140	3	42	445	23	419	0.0	514
MS.gene91948.t1	MTR_5g079840	59.569	371	136	4	52	419	1	360	4.16e-159	458
MS.gene91948.t1	MTR_7g061660	67.702	322	100	2	106	424	43	363	6.64e-155	447
MS.gene91948.t1	MTR_2g096950	59.030	371	137	5	52	419	1	359	2.71e-154	445
MS.gene91948.t1	MTR_7g074610	70.370	297	83	3	124	419	79	371	2.88e-151	439
MS.gene91948.t1	MTR_5g038870	59.128	367	137	4	52	416	1	356	7.72e-149	431

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91948.t1	AT5G15080	72.065	494	108	8	16	488	4	488	0.0	706
MS.gene91948.t1	AT3G01300	69.371	493	135	6	4	488	1	485	0.0	669
MS.gene91948.t1	AT3G28690	67.967	487	136	8	7	491	6	474	0.0	649
MS.gene91948.t1	AT3G28690	75.443	395	86	4	99	491	38	423	0.0	612
MS.gene91948.t1	AT3G28690	76.579	380	78	4	114	491	4	374	0.0	602
MS.gene91948.t1	AT1G07570	60.160	374	128	5	52	422	1	356	5.66e-157	452
MS.gene91948.t1	AT1G07570	60.160	374	128	5	52	422	1	356	5.66e-157	452
MS.gene91948.t1	AT1G07570	60.160	374	128	5	52	422	1	356	5.66e-157	452
MS.gene91948.t1	AT5G02290	59.299	371	130	4	52	419	1	353	1.12e-155	448
MS.gene91948.t1	AT5G02290	59.299	371	130	4	52	419	1	353	1.12e-155	448

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Find 126 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGACCTTCAAGACGA+GGG	0.693659	5.3:-26676173	None:intergenic
AAAAGTGACGTGTACAGTTT+TGG	0.305705	5.3:+26676021	MS.gene91948:CDS
AAAGGTTGGATTGAAGAAAA+TGG	0.251888	5.3:+26674206	MS.gene91948:CDS
AAGAACTTGCCATGTCCTTT+AGG	0.315187	5.3:-26676308	None:intergenic
AAGAAGGATAAAGAGAATGA+GGG	0.578449	5.3:+26673020	MS.gene91948:CDS
AAGACCAAAGTCTGAGAGCT+TGG	0.506606	5.3:-26675208	None:intergenic
AAGGTTGATAGCTCAGTCAG+TGG	0.681555	5.3:+26673122	MS.gene91948:CDS
AATGAGGGTGTGATTGATGA+GGG	0.598535	5.3:+26673035	MS.gene91948:CDS
AATGCCAAGCTCTCAGACTT+TGG	0.424969	5.3:+26675204	MS.gene91948:CDS
AATGCCTCTACCAAACCTAA+AGG	0.575940	5.3:+26676293	MS.gene91948:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAAAAACTGGGTGTT+GGG	+	chr5.3:26673058-26673077	MS.gene91948:CDS	30.0%
AAAGGTTGGATTGAAGAAAA+TGG	+	chr5.3:26674206-26674225	MS.gene91948:CDS	30.0%
AAATTAATCGGATAGAAACC+AGG	-	chr5.3:26674672-26674691	None:intergenic	30.0%
AACAAGATACTCAAAGAAAC+GGG	-	chr5.3:26674838-26674857	None:intergenic	30.0%
AAGAAGGATAAAGAGAATGA+GGG	+	chr5.3:26673020-26673039	MS.gene91948:CDS	30.0%
AAGCCATATTCACAACTATT+TGG	+	chr5.3:26675489-26675508	MS.gene91948:intron	30.0%
AATAACACCAGATGAGAAAA+AGG	-	chr5.3:26674341-26674360	None:intergenic	30.0%
AATCTATGCTCAAGAGTTTA+TGG	+	chr5.3:26675634-26675653	MS.gene91948:intron	30.0%
ACATATTCAGAATATCCTCA+AGG	-	chr5.3:26673638-26673657	None:intergenic	30.0%
AGTAACCTATGAGTTTAACA+AGG	-	chr5.3:26674451-26674470	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	26672942	26676524	26672942	ID=MS.gene91948
chr5.3	mRNA	26672942	26676524	26672942	ID=MS.gene91948.t1;Parent=MS.gene91948
chr5.3	exon	26672942	26673167	26672942	ID=MS.gene91948.t1.exon1;Parent=MS.gene91948.t1
chr5.3	CDS	26672942	26673167	26672942	ID=cds.MS.gene91948.t1;Parent=MS.gene91948.t1
chr5.3	exon	26673979	26674316	26673979	ID=MS.gene91948.t1.exon2;Parent=MS.gene91948.t1
chr5.3	CDS	26673979	26674316	26673979	ID=cds.MS.gene91948.t1;Parent=MS.gene91948.t1
chr5.3	exon	26674410	26674545	26674410	ID=MS.gene91948.t1.exon3;Parent=MS.gene91948.t1
chr5.3	CDS	26674410	26674545	26674410	ID=cds.MS.gene91948.t1;Parent=MS.gene91948.t1
chr5.3	exon	26674986	26675122	26674986	ID=MS.gene91948.t1.exon4;Parent=MS.gene91948.t1
chr5.3	CDS	26674986	26675122	26674986	ID=cds.MS.gene91948.t1;Parent=MS.gene91948.t1
chr5.3	exon	26675198	26675321	26675198	ID=MS.gene91948.t1.exon5;Parent=MS.gene91948.t1
chr5.3	CDS	26675198	26675321	26675198	ID=cds.MS.gene91948.t1;Parent=MS.gene91948.t1
chr5.3	exon	26676007	26676524	26676007	ID=MS.gene91948.t1.exon6;Parent=MS.gene91948.t1
chr5.3	CDS	26676007	26676524	26676007	ID=cds.MS.gene91948.t1;Parent=MS.gene91948.t1

Gene Sequence

>MS.gene91948

ATGGGGTTGTTGGGTTCTGAGAATGTTAAAATGGTGGAGTCTTGGGATGTGTCTAAATCAAAGGGGAGTAAGAAGATGAAGAAGGATAAAGAGAATGAGGGTGTGATTGATGAGGGAAAAACAAAAACTGGGTGTTGGGTTGGGTTGAGATTCATTGGTAGCTGCATTCCTTCAAGATCCAAGGTTGATAGCTCAGTCAGTGGCAGTGGTTCCAGTACTCAGTATGGTAATTACCGTTTCCTTGGAAATGTGTTATTGTTGATTGATTGTTCTTATGATGTGTTTGGAGATTCTATGTTTGTAAAATGTGTTTGTGATATGATTTTGTTTATGTATAAATAGTACTCAGGTTGGTATGCTTTTTCCGTTGCTTTAGCGTTTGGTTTGCTTTTGAAATTTCTTTGAGCACCTTTTCCTGCAATCTAATTGAAAATCACCGTGCTAATTAATGTAAAATGGTGCTCAAATGATATTTGAAAAACAAGGGTTTTTGATTATGTGTGATGTGATCGCTGTTCGAAAGGATGAATGTTCAGTTACCAGACCATACTAACCTCACGGCCGAACTCTAGATTACCAGGCCCCCTTCCCCTGAGAACCGGAGGGTTAACAAAAAAAAAAAGTTCAAATACTTGAGTTTCTCATAATCCTGCTTATTCCGAAAGCAGAATTGAAGAGGGTTTCTGTGTTAATCCTTGAGGATATTCTGAATATGTAGGCTTTGTCGTGAAAAAATGTTTCTTTATTATGTATGCTGTCTTTTAAGTTAACAGAATGACAGAGTACATTTTGGATTGGTTAAGAAAACATAATTGTCAAATTTGAGTAGATATTAGAAAAGAAATTAATCCCAGGTTATTATTTGCAACTAACTAAATTTCAAGCATAAGCTAAAAGGGTGAAATGATTGAGTTATCAAATTACTCTTGAGGCGGCGTCTATTTTCTCATATATTCTTTGCTTATACCACAAGATGTTATTTTAAATTTTATTGCTTGTTCTAATACTTTTTCCCCATCACTTTGGCTTCTTATTAGCTGAAAGTAAATCAACTAATGATACAAGTAGAGGCCAACAAACTGCTCCTGTAATCTCTTCTACAACCACTAGTAACGCAGAAAGCAATTCCTCAACTACTAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCTCTTTCAATGAACTTAAGTTGGCAACAAGAAATTTCCGGCCCGAGAGTTTTCTTGGCGAAGGTGGGTTTGGTTGTGTTTTCAAAGGTTGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACAGTTGCTGTAAAAACCCTTAACCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGTTCGTATAGTTTTTAACAATCCTTTTTCTCATCTGGTGTTATTGCTGAATTCTGTTATTCTAACTAACGTTCTTGTTTGGAACATGTTACAGGCAGAGGTTAATTTTCTTGGTGATCTAGTTCATCAAAACCTTGTTAAACTCATAGGTTACTGCATTGAAGATGATCAAAGGCTGCTAGTGTACGAGTTCATGCCTCGGGGAAGCCTGGAAAATCACTTATTTAGGAGTACGTTACCATTTTCTGACTAATTATTATCTCATTTCCCCTTTCAATAATAATGAAAATACCTTGAAATTATAATAGCATAAATTATCAAATATTGGACTCTTCTGGATGTCTCTTGTGAAACCTGGTTTCTATCCGATTAATTTATAGCATAAATTATTTCCTTTGCATTTGAGAAGAGACTGGTGCATCTTATTTATATGGTGTATTGCTCTAATGATATGCGGATTTAAGATTAATGTATGGAACTAAATTTTAGCGTTATAAGGATGTTTCATATTATGATTATCCCGTTTCTTTGAGTATCTTGTTTTATGTTAAACTTAAAGCTTTCACGAGTAGAGACTGTAACTTGAAAATATGGCTTACTAGTATATTAAAGTTGGATTATATCCTTGTTTGGTGTTCTCATGTAGAAATTGATATTATATCATATGTAGGATCCATGCCTCTTCCATGGTCCATTAGGATGAAAATTGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCACGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCGAATATACTATTAGATGCAGTAAGTACCAAAAATTACAACAAGATTACATTTTTGCTCTTTCCATTTTGTCAGTCTAATATTGTTCTGAATCAGGACTACAATGCCAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGTCCAGAAGGTGATAAAACCCACGTGTCTACTCGGGTGATGGGAACATATGGTTACGCAGCACCAGAATATGTCATGACAGGTTAGATTATCTTGATATGGAAAATCCAATTTTACAAGATATCGTTGATGTCACGCATGCTTACACTTTGTAGGTATTTCTCATGATTCCTTGCAGGACTGTTTTAGCATGTAGTACATATTTTGCTTTTGACCTTCTTTAGGTGTGATGTTAATTCTTCTCCTCATAAGCCATATTCACAACTATTTGGATAAACAACTTAATTAAGCGCTTCTAAGCCTCTATCATACAATTGCTCATGTGTATGCTATTTCTTTAACAAAGATAAACCTAAGTCAAACTGTTTTTATATAAGCTATAAGCTGTTTTCATAATCTATGCTCAAGAGTTTATGGAAATAACCTGCAAACAACCTATAGACATAGTATAAACTGTTTTCATAAACTCTTACGAATAGACTCACAAGTGCTTATGCTAGTAGATAAACTCAAATAAGTCAATCCAAACAGACCCTAAGATGTTAATATAACTGAGATGTCTATAATTTCCTGTCTATGATGATCAATTGTGTTTGATGAGTTTGATAATTTTAGCTGTTGCATTCTCAAACTGCTTATAACTTTTACTAAGGTCATAGTTCTATTACATACTGTTGATAATTTTCAATGTCATTTGTTTTATTTAAATGTAATCTAACATCTGTATTACATAATTGTATGTTTTCAAACTTGTGTGGCACTGGCAGGTCATCTTACGTCAAAAAGTGACGTGTACAGTTTTGGAGTCGTACTACTTGAGATGATATCCGGCAGAAGATCTATGGACAAACACCGACCCAACGGTGAACATAACCTTGTGGAATGGGCTCGACCACATCTAGGAGAGCGAAGAAGGTTCTACCGGTTGATAGACCCTCGTCTTGAAGGTCACTTTTCCGTAAAAGGAGCTCAGAAAGCCGCTCAGCTAGCTCATCACTGCCTGAGCAGAGATCCAAAAGCTAGACCCTTAATGAGTGAAGTTGTCGAAGCTTTAATGCCTCTACCAAACCTAAAGGACATGGCAAGTTCTTCGTACTATTTCCAATCAATGCAAGCCGAGCGGTTCGGAGCGAGTCCAAATTCTAGAAGTATGCATGCACAAGGAGCATCACTTGCTCGGAACGGACAGCAGAGAAGGAGCCTTTCGATACCAAATGGTGCACATGTATCTCCTTATCACCATAAGTATCCTCAACAATCACCTAAACCTAATGTCAAAGCATAG

Protein sequence

>MS.gene91948.t1

MGLLGSENVKMVESWDVSKSKGSKKMKKDKENEGVIDEGKTKTGCWVGLRFIGSCIPSRSKVDSSVSGSGSSTQYAESKSTNDTSRGQQTAPVISSTTTSNAESNSSTTKLEEELKIASRLRKFSFNELKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMISGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSVKGAQKAAQLAHHCLSRDPKARPLMSEVVEALMPLPNLKDMASSSYYFQSMQAERFGASPNSRSMHAQGASLARNGQQRRSLSIPNGAHVSPYHHKYPQQSPKPNVKA