Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92375.t1 | XP_013453291.1 | 93.1 | 432 | 23 | 5 | 1 | 427 | 1 | 430 | 3.50E-224 | 787.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92375.t1 | Q9LT72 | 52.8 | 436 | 175 | 7 | 16 | 427 | 41 | 469 | 7.1e-117 | 422.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92375.t1 | G7ZV99 | 93.1 | 432 | 23 | 5 | 1 | 427 | 1 | 430 | 2.5e-224 | 787.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92375 | MS.gene34495 | PPI |
| MS.gene92375 | MS.gene006293 | PPI |
| MS.gene92375 | MS.gene41434 | PPI |
| MS.gene92375 | MS.gene49091 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92375.t1 | MTR_5g004910 | 92.593 | 432 | 25 | 5 | 1 | 427 | 1 | 430 | 0.0 | 783 |
| MS.gene92375.t1 | MTR_5g004910 | 84.722 | 432 | 19 | 5 | 1 | 427 | 1 | 390 | 0.0 | 719 |
| MS.gene92375.t1 | MTR_7g029385 | 36.667 | 450 | 257 | 9 | 3 | 427 | 85 | 531 | 2.21e-86 | 273 |
| MS.gene92375.t1 | MTR_1g095580 | 31.718 | 227 | 137 | 10 | 137 | 352 | 97 | 316 | 4.63e-14 | 73.6 |
| MS.gene92375.t1 | MTR_1g095580 | 33.981 | 206 | 116 | 11 | 137 | 329 | 97 | 295 | 7.55e-14 | 72.4 |
| MS.gene92375.t1 | MTR_1g095580 | 33.981 | 206 | 116 | 11 | 137 | 329 | 97 | 295 | 9.48e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92375.t1 | AT3G19440 | 53.089 | 437 | 172 | 9 | 16 | 427 | 41 | 469 | 1.22e-141 | 413 |
| MS.gene92375.t1 | AT3G19440 | 51.325 | 302 | 121 | 6 | 16 | 292 | 41 | 341 | 2.13e-93 | 285 |
| MS.gene92375.t1 | AT1G78910 | 41.092 | 348 | 195 | 4 | 89 | 427 | 20 | 366 | 1.59e-90 | 279 |
| MS.gene92375.t1 | AT1G78910 | 39.516 | 372 | 215 | 4 | 65 | 427 | 105 | 475 | 2.72e-89 | 279 |
| MS.gene92375.t1 | AT3G52260 | 28.520 | 277 | 163 | 11 | 137 | 396 | 99 | 357 | 2.11e-12 | 68.6 |
| MS.gene92375.t1 | AT3G52260 | 31.527 | 203 | 120 | 9 | 137 | 326 | 99 | 295 | 2.86e-11 | 65.1 |
Find 106 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCCTGCACTGGCATTCC+AGG | 0.237756 | 5.1:+166314 | None:intergenic |
| TTGCAGTGCTTGAGATATAT+TGG | 0.249374 | 5.1:+164314 | None:intergenic |
| TGCTCCCCTTATTCAAATTA+AGG | 0.275216 | 5.1:+164388 | None:intergenic |
| GTGTTAGGTACACCGATAAT+TGG | 0.277960 | 5.1:-164519 | MS.gene92375:CDS |
| GACGAAAGAGTTTATGGATA+AGG | 0.301927 | 5.1:+166567 | None:intergenic |
| AATTTGTTGTTTAACAGAAT+TGG | 0.308662 | 5.1:+166445 | None:intergenic |
| CTTCGACCCCTGCCCTGAAA+TGG | 0.310329 | 5.1:-166622 | MS.gene92375:CDS |
| AAGGAAGAGGCACTCCCTTT+TGG | 0.322488 | 5.1:-164411 | MS.gene92375:CDS |
| GAAGTGAGAGATTCATGTTT+GGG | 0.323404 | 5.1:+166407 | None:intergenic |
| CGGTATTGGGCATTGGTTCT+TGG | 0.326843 | 5.1:-165989 | MS.gene92375:CDS |
| ATTTGTTGTTTAACAGAATT+GGG | 0.355318 | 5.1:+166446 | None:intergenic |
| ACGAAAGAGTTTATGGATAA+GGG | 0.356956 | 5.1:+166568 | None:intergenic |
| TTTGGCCTTAATTTGAATAA+GGG | 0.361194 | 5.1:-164393 | MS.gene92375:CDS |
| TGTTAGGTACACCGATAATT+GGG | 0.365218 | 5.1:-164518 | MS.gene92375:CDS |
| ATGCCCAATACCGTCTTTGT+AGG | 0.365936 | 5.1:+165999 | None:intergenic |
| TGCAGTGCTTGAGATATATT+GGG | 0.367867 | 5.1:+164315 | None:intergenic |
| AATCCTACAAAGACGGTATT+GGG | 0.380224 | 5.1:-166002 | MS.gene92375:CDS |
| TGGGAGCGGAAGATGGAAAA+TGG | 0.387078 | 5.1:-166697 | MS.gene92375:CDS |
| AGAAGTGAGAGATTCATGTT+TGG | 0.393607 | 5.1:+166406 | None:intergenic |
| AACATGATAACAAGTTCAAA+AGG | 0.395586 | 5.1:-166514 | MS.gene92375:CDS |
| TAAACTCTTTCGTCTAAAAC+AGG | 0.401047 | 5.1:-166558 | MS.gene92375:CDS |
| ATAATTGGGGACTACAAGTA+TGG | 0.402405 | 5.1:-164504 | MS.gene92375:CDS |
| CTTGGATGTCCTAGACGTTC+AGG | 0.404141 | 5.1:-165971 | MS.gene92375:CDS |
| ACAGTTTGATTTGTCTAATC+CGG | 0.412494 | 5.1:-164457 | MS.gene92375:CDS |
| AACATCGTATAACCCATTTC+AGG | 0.413289 | 5.1:+166609 | None:intergenic |
| GAATCCTACAAAGACGGTAT+TGG | 0.413483 | 5.1:-166003 | MS.gene92375:CDS |
| GTCATCTTCGGCGGTGGGAG+CGG | 0.414515 | 5.1:-166711 | MS.gene92375:CDS |
| TGTTATCATGTTGTTGTTGT+GGG | 0.414635 | 5.1:+166525 | None:intergenic |
| TTACTCTCAACCTCCTCGTT+TGG | 0.421311 | 5.1:-166237 | MS.gene92375:CDS |
| TACTTGTAGTCCCCAATTAT+CGG | 0.434618 | 5.1:+164507 | None:intergenic |
| AGACTAGACAGAGATTGTTC+TGG | 0.437828 | 5.1:-166209 | MS.gene92375:CDS |
| CGGAGTCATTAATGCTCCAC+TGG | 0.441021 | 5.1:-165948 | MS.gene92375:CDS |
| ACCTCCTGGAATGCCAGTGC+AGG | 0.441859 | 5.1:-166318 | MS.gene92375:CDS |
| TTCGACCCCTGCCCTGAAAT+GGG | 0.457533 | 5.1:-166621 | MS.gene92375:CDS |
| TTGTTATCATGTTGTTGTTG+TGG | 0.457895 | 5.1:+166524 | None:intergenic |
| TCAGTTGTCATCTTCGGCGG+TGG | 0.461851 | 5.1:-166717 | MS.gene92375:CDS |
| CATTAATGCTCCACTGGGTA+AGG | 0.462981 | 5.1:-165942 | MS.gene92375:intron |
| TCGGAGCCGCCGTGAGATCA+TGG | 0.463090 | 5.1:-166751 | MS.gene92375:CDS |
| ATATTAATGCCACCCTGCAC+TGG | 0.469485 | 5.1:+166305 | None:intergenic |
| TTGGAGCTTTCCCCTTTAAC+CGG | 0.469543 | 5.1:-164696 | MS.gene92375:CDS |
| CCTGAGTTCAAAGTATCCTT+AGG | 0.470817 | 5.1:+166485 | None:intergenic |
| TTATTCAAATTAAGGCCAAA+AGG | 0.471079 | 5.1:+164396 | None:intergenic |
| CGTATAACCCATTTCAGGGC+AGG | 0.484818 | 5.1:+166614 | None:intergenic |
| TGTTCTTCAGTTGAGTCCTC+CGG | 0.485992 | 5.1:+164438 | None:intergenic |
| TCGGCGGTGGGAGCGGAAGA+TGG | 0.491571 | 5.1:-166704 | MS.gene92375:CDS |
| AGTAGTTGAATCACTTGAGC+TGG | 0.493399 | 5.1:-164253 | MS.gene92375:CDS |
| ATCTCACGGCGGCTCCGACT+CGG | 0.498702 | 5.1:+166756 | None:intergenic |
| TCGTCGTCAGTTGTCATCTT+CGG | 0.501141 | 5.1:-166723 | MS.gene92375:CDS |
| CTTGTTCTAAACAAACCTCC+TGG | 0.510763 | 5.1:-166332 | MS.gene92375:CDS |
| TATTCAAATTAAGGCCAAAA+GGG | 0.513142 | 5.1:+164397 | None:intergenic |
| ACAAAGACGGTATTGGGCAT+TGG | 0.515751 | 5.1:-165996 | MS.gene92375:CDS |
| GTTCAAAAGGGTTACACCTA+AGG | 0.516651 | 5.1:-166501 | MS.gene92375:CDS |
| CTCAACTGAAGAACATCTCA+AGG | 0.534627 | 5.1:-164430 | MS.gene92375:CDS |
| TTGTTCTGGAATTCTTGTCA+TGG | 0.537926 | 5.1:-166195 | MS.gene92375:CDS |
| TGTTCTGGAATTCTTGTCAT+GGG | 0.542629 | 5.1:-166194 | MS.gene92375:CDS |
| AACATCAAGGGCTTCAAATG+AGG | 0.542967 | 5.1:-166123 | MS.gene92375:intron |
| TTGGCCTTAATTTGAATAAG+GGG | 0.543687 | 5.1:-164392 | MS.gene92375:CDS |
| TGAATCACTTGAGCTGGAAG+CGG | 0.546029 | 5.1:-164247 | MS.gene92375:CDS |
| CCCTGCACTGGCATTCCAGG+AGG | 0.555262 | 5.1:+166317 | None:intergenic |
| CAGTTGTCATCTTCGGCGGT+GGG | 0.555838 | 5.1:-166716 | MS.gene92375:CDS |
| ACATCGTATAACCCATTTCA+GGG | 0.562278 | 5.1:+166610 | None:intergenic |
| CCTAAGGATACTTTGAACTC+AGG | 0.564942 | 5.1:-166485 | MS.gene92375:CDS |
| GTCCACTGTGCTGAAGTGTT+AGG | 0.564993 | 5.1:-164534 | MS.gene92375:CDS |
| TGATGCAGGTTATACATGGT+TGG | 0.566674 | 5.1:-164715 | MS.gene92375:intron |
| TGAAGAACATCTCAAGGAAG+AGG | 0.572591 | 5.1:-164424 | MS.gene92375:CDS |
| ACATGATAACAAGTTCAAAA+GGG | 0.572750 | 5.1:-166513 | MS.gene92375:CDS |
| GACGGCAAGCTCATAAGAAG+TGG | 0.573583 | 5.1:-164482 | MS.gene92375:CDS |
| GTATAACCCATTTCAGGGCA+GGG | 0.573844 | 5.1:+166615 | None:intergenic |
| TCGAAGTCGAAGAGGTCACT+TGG | 0.576852 | 5.1:+166639 | None:intergenic |
| ATGACTCCGCCTGAACGTCT+AGG | 0.583378 | 5.1:+165962 | None:intergenic |
| TATAACCCATTTCAGGGCAG+GGG | 0.588867 | 5.1:+166616 | None:intergenic |
| GTGATTTCATCATCGTCTCA+AGG | 0.589230 | 5.1:-165414 | MS.gene92375:intron |
| GTGAGAGATTCATGTTTGGG+GGG | 0.599286 | 5.1:+166410 | None:intergenic |
| TTGTTTAGAACAAGAATGTG+AGG | 0.599711 | 5.1:+166341 | None:intergenic |
| AGTGAGAGATTCATGTTTGG+GGG | 0.602687 | 5.1:+166409 | None:intergenic |
| ACACTTCAGCACAGTGGACA+CGG | 0.608556 | 5.1:+164538 | None:intergenic |
| ACGGCAAGCTCATAAGAAGT+GGG | 0.609384 | 5.1:-164481 | MS.gene92375:CDS |
| AAGTGAGAGATTCATGTTTG+GGG | 0.615302 | 5.1:+166408 | None:intergenic |
| CCTCCTGGAATGCCAGTGCA+GGG | 0.615398 | 5.1:-166317 | MS.gene92375:CDS |
| GTTTGATTTGTCTAATCCGG+AGG | 0.618245 | 5.1:-164454 | MS.gene92375:CDS |
| AAAAGAGAATCCTACAAAGA+CGG | 0.625860 | 5.1:-166009 | MS.gene92375:CDS |
| TTTCAGGTCGTGGTTGACAA+CGG | 0.626018 | 5.1:-165510 | MS.gene92375:intron |
| TTTAAATAAATAGAATGACA+CGG | 0.627054 | 5.1:-166032 | MS.gene92375:intron |
| TTTACAGTAGTAGTACTCAC+AGG | 0.632848 | 5.1:+166662 | None:intergenic |
| TTGGGGACTACAAGTATGGA+CGG | 0.637760 | 5.1:-164500 | MS.gene92375:CDS |
| GGCAGGGGTCGAAGTCGAAG+AGG | 0.644349 | 5.1:+166631 | None:intergenic |
| GTTAGGTACACCGATAATTG+GGG | 0.648978 | 5.1:-164517 | MS.gene92375:CDS |
| TCTAGTCTATGCACCAAACG+AGG | 0.653888 | 5.1:+166224 | None:intergenic |
| ACAAGTATGTATGTCCGAGT+CGG | 0.658753 | 5.1:-166770 | None:intergenic |
| GGAGTCATTAATGCTCCACT+GGG | 0.666010 | 5.1:-165947 | MS.gene92375:CDS |
| GTAATGATGCAGGTTATACA+TGG | 0.670336 | 5.1:-164719 | MS.gene92375:intron |
| GGATGTCCTAGACGTTCAGG+CGG | 0.673625 | 5.1:-165968 | MS.gene92375:CDS |
| TTTAACCGGTAGAAAACACC+AGG | 0.674752 | 5.1:-164682 | MS.gene92375:intron |
| TCGTCAGTTGTCATCTTCGG+CGG | 0.676738 | 5.1:-166720 | MS.gene92375:CDS |
| GAAGATGGAATGCAAAAGTG+CGG | 0.677074 | 5.1:+166154 | None:intergenic |
| ACGACGACTCCATGATCTCA+CGG | 0.680735 | 5.1:+166742 | None:intergenic |
| CGGCAAGCTCATAAGAAGTG+GGG | 0.688690 | 5.1:-164480 | MS.gene92375:CDS |
| GAGACGATGATGAAATCACT+CGG | 0.700343 | 5.1:+165418 | None:intergenic |
| CCTGGAATGCCAGTGCAGGG+TGG | 0.701700 | 5.1:-166314 | MS.gene92375:CDS |
| AGTCTATGCACCAAACGAGG+AGG | 0.704414 | 5.1:+166227 | None:intergenic |
| CAAGTGATTCAACTACTGAG+AGG | 0.710001 | 5.1:+164259 | None:intergenic |
| TACCTAACACTTCAGCACAG+TGG | 0.710893 | 5.1:+164532 | None:intergenic |
| ATGGATACAACCTTACCCAG+TGG | 0.725015 | 5.1:+165932 | None:intergenic |
| ACAGTAGTAGTACTCACAGG+TGG | 0.735705 | 5.1:+166665 | None:intergenic |
| TTGCAATGAAGATGTAATCG+AGG | 0.736658 | 5.1:+164351 | None:intergenic |
| ACGACTCCATGATCTCACGG+CGG | 0.860711 | 5.1:+166745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATAAATAGAATGACA+CGG | - | chr5.1:164932-164951 | MS.gene92375:intron | 15.0% |
| !!! | TTTAAACTTATCTTTAGTTT+TGG | - | chr5.1:165733-165752 | MS.gene92375:intron | 15.0% |
| !! | AACAATCAGAATAGAAATTA+TGG | + | chr5.1:166388-166407 | None:intergenic | 20.0% |
| !! | ACAATCAGAATAGAAATTAT+GGG | + | chr5.1:166387-166406 | None:intergenic | 20.0% |
| !! | TAATAAAGATTAAGCCTTTA+CGG | + | chr5.1:165342-165361 | None:intergenic | 20.0% |
| !!! | AATTTGTTGTTTAACAGAAT+TGG | + | chr5.1:164522-164541 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTTTAACAGAATT+GGG | + | chr5.1:164521-164540 | None:intergenic | 20.0% |
| !!! | CTTCAATTTAATTTCATGTT+TGG | - | chr5.1:166009-166028 | MS.gene92375:CDS | 20.0% |
| !!! | TCACAAATTTTCCATATTTT+AGG | + | chr5.1:166129-166148 | None:intergenic | 20.0% |
| ! | AAAACTAAACATAACAAAGG+GGG | + | chr5.1:166168-166187 | None:intergenic | 25.0% |
| ! | AAATGTTTGAGCCTAAAATA+TGG | - | chr5.1:166115-166134 | MS.gene92375:intron | 25.0% |
| ! | AACATGATAACAAGTTCAAA+AGG | - | chr5.1:164450-164469 | MS.gene92375:CDS | 25.0% |
| ! | AACATTGTGATTTAACTGAA+AGG | + | chr5.1:165076-165095 | None:intergenic | 25.0% |
| ! | ACAACATTATTGACAATATG+AGG | + | chr5.1:165415-165434 | None:intergenic | 25.0% |
| ! | ACATGATAACAAGTTCAAAA+GGG | - | chr5.1:164451-164470 | MS.gene92375:CDS | 25.0% |
| ! | AGCAATAAAGATAATTTGAG+AGG | + | chr5.1:165759-165778 | None:intergenic | 25.0% |
| ! | AGGAAAACTAAACATAACAA+AGG | + | chr5.1:166171-166190 | None:intergenic | 25.0% |
| ! | CAATCAGAATAGAAATTATG+GGG | + | chr5.1:166386-166405 | None:intergenic | 25.0% |
| ! | GAAAACTAAACATAACAAAG+GGG | + | chr5.1:166169-166188 | None:intergenic | 25.0% |
| ! | GGAAAACTAAACATAACAAA+GGG | + | chr5.1:166170-166189 | None:intergenic | 25.0% |
| ! | TAAGTCACCTTAAAATTTAG+AGG | - | chr5.1:165606-165625 | MS.gene92375:intron | 25.0% |
| ! | TAGGATTTAGCAAGATAATT+AGG | + | chr5.1:165152-165171 | None:intergenic | 25.0% |
| ! | TATTCAAATTAAGGCCAAAA+GGG | + | chr5.1:166570-166589 | None:intergenic | 25.0% |
| ! | TTATTCAAATTAAGGCCAAA+AGG | + | chr5.1:166571-166590 | None:intergenic | 25.0% |
| !! | ACATCAACCTCTAAATTTTA+AGG | + | chr5.1:165616-165635 | None:intergenic | 25.0% |
| !! | TAAATCACAATGTTTTGCAA+TGG | - | chr5.1:165082-165101 | MS.gene92375:intron | 25.0% |
| !! | TTTTGTAAACTCAACTAGTT+TGG | + | chr5.1:165891-165910 | None:intergenic | 25.0% |
| !!! | AATGGTTCTTTATTTTCTCT+TGG | - | chr5.1:165100-165119 | MS.gene92375:intron | 25.0% |
| !!! | GGAAAATAGAATTTTAGTCT+GGG | - | chr5.1:166030-166049 | MS.gene92375:intron | 25.0% |
| !!! | GTGTTTTAAATTTAGTTCAC+TGG | + | chr5.1:165216-165235 | None:intergenic | 25.0% |
| !!! | TGGAAAATAGAATTTTAGTC+TGG | - | chr5.1:166029-166048 | MS.gene92375:intron | 25.0% |
| !!! | TTTGGCCTTAATTTGAATAA+GGG | - | chr5.1:166571-166590 | MS.gene92375:CDS | 25.0% |
| !!! | TTTTGGCCTTAATTTGAATA+AGG | - | chr5.1:166570-166589 | MS.gene92375:CDS | 25.0% |
| AAAAGAGAATCCTACAAAGA+CGG | - | chr5.1:164955-164974 | MS.gene92375:intron | 30.0% | |
| AAACTAAACATAACAAAGGG+GGG | + | chr5.1:166167-166186 | None:intergenic | 30.0% | |
| AAGGAAACATAGGGTAAAAT+AGG | + | chr5.1:165171-165190 | None:intergenic | 30.0% | |
| ACAAGTAATGTAAAGCAGAA+AGG | + | chr5.1:165190-165209 | None:intergenic | 30.0% | |
| ACGAAAGAGTTTATGGATAA+GGG | + | chr5.1:164399-164418 | None:intergenic | 30.0% | |
| CTGAAACCAAATCAAATGAA+GGG | + | chr5.1:165440-165459 | None:intergenic | 30.0% | |
| TAAAGCAGAAAGGAAACATA+GGG | + | chr5.1:165180-165199 | None:intergenic | 30.0% | |
| TGTTGTGATAGAAATCATGT+AGG | + | chr5.1:166084-166103 | None:intergenic | 30.0% | |
| TTCACATCATCACATGTTAT+TGG | - | chr5.1:165940-165959 | MS.gene92375:intron | 30.0% | |
| TTGTAACCCTTCATTTGATT+TGG | - | chr5.1:165431-165450 | MS.gene92375:CDS | 30.0% | |
| TTGTATCCATATTCTCAACT+TGG | - | chr5.1:165045-165064 | MS.gene92375:intron | 30.0% | |
| TTTCTGCTTTACATTACTTG+TGG | - | chr5.1:165189-165208 | MS.gene92375:intron | 30.0% | |
| ! | AGTTTATGGATAAGGGTTTT+AGG | + | chr5.1:164392-164411 | None:intergenic | 30.0% |
| ! | TAAACTCTTTCGTCTAAAAC+AGG | - | chr5.1:164406-164425 | MS.gene92375:CDS | 30.0% |
| ! | TGAACTTGTGTTTTATAGCA+CGG | - | chr5.1:165661-165680 | MS.gene92375:intron | 30.0% |
| ! | TGTTATCATGTTGTTGTTGT+GGG | + | chr5.1:164442-164461 | None:intergenic | 30.0% |
| ! | TTGTTATCATGTTGTTGTTG+TGG | + | chr5.1:164443-164462 | None:intergenic | 30.0% |
| ! | TTGTTTAGAACAAGAATGTG+AGG | + | chr5.1:164626-164645 | None:intergenic | 30.0% |
| !! | ACAGTTTGATTTGTCTAATC+CGG | - | chr5.1:166507-166526 | MS.gene92375:CDS | 30.0% |
| !! | GTTTTAGACGAAAGAGTTTA+TGG | + | chr5.1:164406-164425 | None:intergenic | 30.0% |
| !! | TTGGCCTTAATTTGAATAAG+GGG | - | chr5.1:166572-166591 | MS.gene92375:CDS | 30.0% |
| !!! | AGCATGCATTTTTTGCATTT+CGG | + | chr5.1:165867-165886 | None:intergenic | 30.0% |
| !!! | ATTTTAGTTTCCATAGTGTG+TGG | - | chr5.1:165237-165256 | MS.gene92375:intron | 30.0% |
| AACACCAGGTAATAGAAACA+AGG | - | chr5.1:166296-166315 | MS.gene92375:CDS | 35.0% | |
| AACATCGTATAACCCATTTC+AGG | + | chr5.1:164358-164377 | None:intergenic | 35.0% | |
| AAGTGAGAGATTCATGTTTG+GGG | + | chr5.1:164559-164578 | None:intergenic | 35.0% | |
| AATCCTACAAAGACGGTATT+GGG | - | chr5.1:164962-164981 | MS.gene92375:intron | 35.0% | |
| AATTAAGATCTCCCTCCTTA+TGG | - | chr5.1:165836-165855 | MS.gene92375:intron | 35.0% | |
| ACACCAGGTAATAGAAACAA+GGG | - | chr5.1:166297-166316 | MS.gene92375:CDS | 35.0% | |
| ACATCGTATAACCCATTTCA+GGG | + | chr5.1:164357-164376 | None:intergenic | 35.0% | |
| AGAAGTGAGAGATTCATGTT+TGG | + | chr5.1:164561-164580 | None:intergenic | 35.0% | |
| AGGCTCAAACATTTGCAATT+AGG | + | chr5.1:166109-166128 | None:intergenic | 35.0% | |
| ATAATTGGGGACTACAAGTA+TGG | - | chr5.1:166460-166479 | MS.gene92375:CDS | 35.0% | |
| ATACATGAAAAAGAGTTGGG+AGG | - | chr5.1:166750-166769 | MS.gene92375:CDS | 35.0% | |
| ATTTCGGTAATTCCATAAGG+AGG | + | chr5.1:165851-165870 | None:intergenic | 35.0% | |
| CAATATGCAATAGTCCGTAA+AGG | - | chr5.1:165325-165344 | MS.gene92375:intron | 35.0% | |
| CCCATACATGAAAAAGAGTT+GGG | - | chr5.1:166747-166766 | MS.gene92375:CDS | 35.0% | |
| CCTGAAACCAAATCAAATGA+AGG | + | chr5.1:165441-165460 | None:intergenic | 35.0% | |
| CTTCCGTGAAAAAACATCAA+GGG | - | chr5.1:164829-164848 | MS.gene92375:intron | 35.0% | |
| GAAGTGAGAGATTCATGTTT+GGG | + | chr5.1:164560-164579 | None:intergenic | 35.0% | |
| GACGAAAGAGTTTATGGATA+AGG | + | chr5.1:164400-164419 | None:intergenic | 35.0% | |
| GCACAAGTAATTAAACCGAT+AGG | - | chr5.1:166052-166071 | MS.gene92375:intron | 35.0% | |
| GTAAAGCAGAAAGGAAACAT+AGG | + | chr5.1:165181-165200 | None:intergenic | 35.0% | |
| GTAATGATGCAGGTTATACA+TGG | - | chr5.1:166245-166264 | MS.gene92375:CDS | 35.0% | |
| TACTTGTAGTCCCCAATTAT+CGG | + | chr5.1:166460-166479 | None:intergenic | 35.0% | |
| TATTGCATATTGCAGCTGTA+AGG | + | chr5.1:165317-165336 | None:intergenic | 35.0% | |
| TCTATTCTGATTGTTTGTGC+TGG | - | chr5.1:166393-166412 | MS.gene92375:CDS | 35.0% | |
| TCTCCTTTGATCTTCTTAGT+TGG | - | chr5.1:166201-166220 | MS.gene92375:CDS | 35.0% | |
| TCTTCCGTGAAAAAACATCA+AGG | - | chr5.1:164828-164847 | MS.gene92375:intron | 35.0% | |
| TGCAGTGCTTGAGATATATT+GGG | + | chr5.1:166652-166671 | None:intergenic | 35.0% | |
| TGCATTTCGGTAATTCCATA+AGG | + | chr5.1:165854-165873 | None:intergenic | 35.0% | |
| TGCTCCCCTTATTCAAATTA+AGG | + | chr5.1:166579-166598 | None:intergenic | 35.0% | |
| TGTTAGGTACACCGATAATT+GGG | - | chr5.1:166446-166465 | MS.gene92375:CDS | 35.0% | |
| TTGCAATGAAGATGTAATCG+AGG | + | chr5.1:166616-166635 | None:intergenic | 35.0% | |
| TTGCAGTGCTTGAGATATAT+TGG | + | chr5.1:166653-166672 | None:intergenic | 35.0% | |
| TTGCCAACTAAGAAGATCAA+AGG | + | chr5.1:166207-166226 | None:intergenic | 35.0% | |
| TTTACAGTAGTAGTACTCAC+AGG | + | chr5.1:164305-164324 | None:intergenic | 35.0% | |
| TTTCGGTAATTCCATAAGGA+GGG | + | chr5.1:165850-165869 | None:intergenic | 35.0% | |
| ! | GACAATATGAGGAGCTTTTA+TGG | + | chr5.1:165404-165423 | None:intergenic | 35.0% |
| ! | GATTAGCCAAGTTGAGAATA+TGG | + | chr5.1:165054-165073 | None:intergenic | 35.0% |
| ! | TATTACCTGGTGTTTTCTAC+CGG | + | chr5.1:166290-166309 | None:intergenic | 35.0% |
| !! | CAACTCTTTTTCATGTATGG+GGG | + | chr5.1:166748-166767 | None:intergenic | 35.0% |
| !! | CCAACTCTTTTTCATGTATG+GGG | + | chr5.1:166749-166768 | None:intergenic | 35.0% |
| !! | CCCAACTCTTTTTCATGTAT+GGG | + | chr5.1:166750-166769 | None:intergenic | 35.0% |
| !! | CCTTCATTTGATTTGGTTTC+AGG | - | chr5.1:165438-165457 | MS.gene92375:CDS | 35.0% |
| !! | TCCCAACTCTTTTTCATGTA+TGG | + | chr5.1:166751-166770 | None:intergenic | 35.0% |
| !! | TGTTCTGGAATTCTTGTCAT+GGG | - | chr5.1:164770-164789 | MS.gene92375:intron | 35.0% |
| !! | TTGTTCTGGAATTCTTGTCA+TGG | - | chr5.1:164769-164788 | MS.gene92375:intron | 35.0% |
| !!! | AAGCCCTTGATGTTTTTTCA+CGG | + | chr5.1:164835-164854 | None:intergenic | 35.0% |
| !!! | ATAAGGGTTTTAGGTAGTTG+AGG | + | chr5.1:164383-164402 | None:intergenic | 35.0% |
| !!! | TAAGGGTTTTAGGTAGTTGA+GGG | + | chr5.1:164382-164401 | None:intergenic | 35.0% |
| !!! | TGATGTTTTTTCACGGAAGA+TGG | + | chr5.1:164828-164847 | None:intergenic | 35.0% |
| AACATCAAGGGCTTCAAATG+AGG | - | chr5.1:164841-164860 | MS.gene92375:intron | 40.0% | |
| AATGTCACAGACACTGCAAA+AGG | + | chr5.1:165714-165733 | None:intergenic | 40.0% | |
| AGACTAGACAGAGATTGTTC+TGG | - | chr5.1:164755-164774 | MS.gene92375:intron | 40.0% | |
| AGTAGTTGAATCACTTGAGC+TGG | - | chr5.1:166711-166730 | MS.gene92375:CDS | 40.0% | |
| AGTGAGAGATTCATGTTTGG+GGG | + | chr5.1:164558-164577 | None:intergenic | 40.0% | |
| ATGTCACAGACACTGCAAAA+GGG | + | chr5.1:165713-165732 | None:intergenic | 40.0% | |
| CAAGTGATTCAACTACTGAG+AGG | + | chr5.1:166708-166727 | None:intergenic | 40.0% | |
| CCCCATACATGAAAAAGAGT+TGG | - | chr5.1:166746-166765 | MS.gene92375:CDS | 40.0% | |
| CCTAAGGATACTTTGAACTC+AGG | - | chr5.1:164479-164498 | MS.gene92375:CDS | 40.0% | |
| CGAGCTGATAGCTACATAAA+AGG | - | chr5.1:165981-166000 | MS.gene92375:CDS | 40.0% | |
| CTCAACTGAAGAACATCTCA+AGG | - | chr5.1:166534-166553 | MS.gene92375:CDS | 40.0% | |
| CTGATAGCTACATAAAAGGC+AGG | - | chr5.1:165985-166004 | MS.gene92375:CDS | 40.0% | |
| GAAGATGGAATGCAAAAGTG+CGG | + | chr5.1:164813-164832 | None:intergenic | 40.0% | |
| GAATCATTACCAGCTGATCT+TGG | - | chr5.1:166322-166341 | MS.gene92375:CDS | 40.0% | |
| GAATCCTACAAAGACGGTAT+TGG | - | chr5.1:164961-164980 | MS.gene92375:intron | 40.0% | |
| GAGACGATGATGAAATCACT+CGG | + | chr5.1:165549-165568 | None:intergenic | 40.0% | |
| GTGATTTCATCATCGTCTCA+AGG | - | chr5.1:165550-165569 | MS.gene92375:intron | 40.0% | |
| GTGTTAGGTACACCGATAAT+TGG | - | chr5.1:166445-166464 | MS.gene92375:CDS | 40.0% | |
| GTTAGGTACACCGATAATTG+GGG | - | chr5.1:166447-166466 | MS.gene92375:CDS | 40.0% | |
| GTTCAAAAGGGTTACACCTA+AGG | - | chr5.1:164463-164482 | MS.gene92375:CDS | 40.0% | |
| TAAACATAACAAAGGGGGGA+GGG | + | chr5.1:166163-166182 | None:intergenic | 40.0% | |
| TCATGTAGGACATCACCTAT+CGG | + | chr5.1:166070-166089 | None:intergenic | 40.0% | |
| TCATTACCAGTGACATGAGT+CGG | + | chr5.1:166232-166251 | None:intergenic | 40.0% | |
| TGAAGAACATCTCAAGGAAG+AGG | - | chr5.1:166540-166559 | MS.gene92375:CDS | 40.0% | |
| TGATGCAGGTTATACATGGT+TGG | - | chr5.1:166249-166268 | MS.gene92375:CDS | 40.0% | |
| TGGCAATCATTGTGTATACG+AGG | + | chr5.1:165263-165282 | None:intergenic | 40.0% | |
| TTTAACCGGTAGAAAACACC+AGG | - | chr5.1:166282-166301 | MS.gene92375:CDS | 40.0% | |
| TTTATAGCACGGCATAACTC+TGG | - | chr5.1:165672-165691 | MS.gene92375:intron | 40.0% | |
| TTTCATCATCGTCTCAAGGT+TGG | - | chr5.1:165554-165573 | MS.gene92375:intron | 40.0% | |
| ! | CCTGAGTTCAAAGTATCCTT+AGG | + | chr5.1:164482-164501 | None:intergenic | 40.0% |
| ! | CTTGTTCTAAACAAACCTCC+TGG | - | chr5.1:164632-164651 | MS.gene92375:intron | 40.0% |
| ! | TCAAAGGAGACACGTTTTGA+AGG | + | chr5.1:166191-166210 | None:intergenic | 40.0% |
| !! | CTTCCCTTGTTTCTATTACC+TGG | + | chr5.1:166303-166322 | None:intergenic | 40.0% |
| !! | GGTGTTTTCTACCGGTTAAA+GGG | + | chr5.1:166282-166301 | None:intergenic | 40.0% |
| !! | GTGTTTTCTACCGGTTAAAG+GGG | + | chr5.1:166281-166300 | None:intergenic | 40.0% |
| !! | GTTTGATTTGTCTAATCCGG+AGG | - | chr5.1:166510-166529 | MS.gene92375:CDS | 40.0% |
| !! | TGGTGTTTTCTACCGGTTAA+AGG | + | chr5.1:166283-166302 | None:intergenic | 40.0% |
| !! | TTTGATTTGGTTTCAGGTCG+TGG | - | chr5.1:165444-165463 | MS.gene92375:CDS | 40.0% |
| AAACATAACAAAGGGGGGAG+GGG | + | chr5.1:166162-166181 | None:intergenic | 45.0% | |
| ACAAGTTCACCCACACTTAC+AGG | + | chr5.1:165650-165669 | None:intergenic | 45.0% | |
| ACAGTAGTAGTACTCACAGG+TGG | + | chr5.1:164302-164321 | None:intergenic | 45.0% | |
| ACGGCAAGCTCATAAGAAGT+GGG | - | chr5.1:166483-166502 | MS.gene92375:CDS | 45.0% | |
| ATATTAATGCCACCCTGCAC+TGG | + | chr5.1:164662-164681 | None:intergenic | 45.0% | |
| ATGCCCAATACCGTCTTTGT+AGG | + | chr5.1:164968-164987 | None:intergenic | 45.0% | |
| ATGGATACAACCTTACCCAG+TGG | + | chr5.1:165035-165054 | None:intergenic | 45.0% | |
| ATGTGACAGCAGAGAGTTGT+TGG | + | chr5.1:165283-165302 | None:intergenic | 45.0% | |
| CAAGTTCACCCACACTTACA+GGG | + | chr5.1:165649-165668 | None:intergenic | 45.0% | |
| CATTAATGCTCCACTGGGTA+AGG | - | chr5.1:165022-165041 | MS.gene92375:intron | 45.0% | |
| CATTACCAGTGACATGAGTC+GGG | + | chr5.1:166231-166250 | None:intergenic | 45.0% | |
| CTAAACATAACAAAGGGGGG+AGG | + | chr5.1:166164-166183 | None:intergenic | 45.0% | |
| CTGCTGTCACATGAATGCTT+AGG | - | chr5.1:165291-165310 | MS.gene92375:intron | 45.0% | |
| GGAGTCATTAATGCTCCACT+GGG | - | chr5.1:165017-165036 | MS.gene92375:intron | 45.0% | |
| GTATAACCCATTTCAGGGCA+GGG | + | chr5.1:164352-164371 | None:intergenic | 45.0% | |
| GTGAGAGATTCATGTTTGGG+GGG | + | chr5.1:164557-164576 | None:intergenic | 45.0% | |
| GTGATTGTCCCTGTAAGTGT+GGG | - | chr5.1:165638-165657 | MS.gene92375:intron | 45.0% | |
| GTTGTAGTACCAAGATCAGC+TGG | + | chr5.1:166334-166353 | None:intergenic | 45.0% | |
| TACCTAACACTTCAGCACAG+TGG | + | chr5.1:166435-166454 | None:intergenic | 45.0% | |
| TATAACCCATTTCAGGGCAG+GGG | + | chr5.1:164351-164370 | None:intergenic | 45.0% | |
| TCGTCGTCAGTTGTCATCTT+CGG | - | chr5.1:164241-164260 | MS.gene92375:CDS | 45.0% | |
| TCTAGTCTATGCACCAAACG+AGG | + | chr5.1:164743-164762 | None:intergenic | 45.0% | |
| TGAATCACTTGAGCTGGAAG+CGG | - | chr5.1:166717-166736 | MS.gene92375:CDS | 45.0% | |
| TGTGATTGTCCCTGTAAGTG+TGG | - | chr5.1:165637-165656 | MS.gene92375:intron | 45.0% | |
| TGTTCTTCAGTTGAGTCCTC+CGG | + | chr5.1:166529-166548 | None:intergenic | 45.0% | |
| TTACTCTCAACCTCCTCGTT+TGG | - | chr5.1:164727-164746 | MS.gene92375:intron | 45.0% | |
| TTGGAGCTTTCCCCTTTAAC+CGG | - | chr5.1:166268-166287 | MS.gene92375:CDS | 45.0% | |
| TTGGGGACTACAAGTATGGA+CGG | - | chr5.1:166464-166483 | MS.gene92375:CDS | 45.0% | |
| ! | ACAAAGACGGTATTGGGCAT+TGG | - | chr5.1:164968-164987 | MS.gene92375:intron | 45.0% |
| ! | CATGTCACTGGTAATGATGC+AGG | - | chr5.1:166235-166254 | MS.gene92375:CDS | 45.0% |
| ! | TTTCAGGTCGTGGTTGACAA+CGG | - | chr5.1:165454-165473 | MS.gene92375:CDS | 45.0% |
| AACATAACAAAGGGGGGAGG+GGG | + | chr5.1:166161-166180 | None:intergenic | 50.0% | |
| ACACTTCAGCACAGTGGACA+CGG | + | chr5.1:166429-166448 | None:intergenic | 50.0% | |
| ACGACGACTCCATGATCTCA+CGG | + | chr5.1:164225-164244 | None:intergenic | 50.0% | |
| AGTCTATGCACCAAACGAGG+AGG | + | chr5.1:164740-164759 | None:intergenic | 50.0% | |
| CGGAGTCATTAATGCTCCAC+TGG | - | chr5.1:165016-165035 | MS.gene92375:intron | 50.0% | |
| CGGCAAGCTCATAAGAAGTG+GGG | - | chr5.1:166484-166503 | MS.gene92375:CDS | 50.0% | |
| CGTATAACCCATTTCAGGGC+AGG | + | chr5.1:164353-164372 | None:intergenic | 50.0% | |
| CTTGGATGTCCTAGACGTTC+AGG | - | chr5.1:164993-165012 | MS.gene92375:intron | 50.0% | |
| GACGGCAAGCTCATAAGAAG+TGG | - | chr5.1:166482-166501 | MS.gene92375:CDS | 50.0% | |
| GTATACGAGGCCACACACTA+TGG | + | chr5.1:165250-165269 | None:intergenic | 50.0% | |
| TCGAAGTCGAAGAGGTCACT+TGG | + | chr5.1:164328-164347 | None:intergenic | 50.0% | |
| TCGTCAGTTGTCATCTTCGG+CGG | - | chr5.1:164244-164263 | MS.gene92375:CDS | 50.0% | |
| TGGGAGCGGAAGATGGAAAA+TGG | - | chr5.1:164267-164286 | MS.gene92375:CDS | 50.0% | |
| ! | GTCCACTGTGCTGAAGTGTT+AGG | - | chr5.1:166430-166449 | MS.gene92375:CDS | 50.0% |
| ! | TCATGTTTGGGGGGTGTAGT+AGG | + | chr5.1:164548-164567 | None:intergenic | 50.0% |
| !! | CGGTATTGGGCATTGGTTCT+TGG | - | chr5.1:164975-164994 | MS.gene92375:intron | 50.0% |
| !!! | AAGGAAGAGGCACTCCCTTT+TGG | - | chr5.1:166553-166572 | MS.gene92375:CDS | 50.0% |
| ACATAACAAAGGGGGGAGGG+GGG | + | chr5.1:166160-166179 | None:intergenic | 55.0% | |
| ACGACTCCATGATCTCACGG+CGG | + | chr5.1:164222-164241 | None:intergenic | 55.0% | |
| ATGACTCCGCCTGAACGTCT+AGG | + | chr5.1:165005-165024 | None:intergenic | 55.0% | |
| CAGTTGTCATCTTCGGCGGT+GGG | - | chr5.1:164248-164267 | MS.gene92375:CDS | 55.0% | |
| GCAATCCCGACTCATGTCAC+TGG | - | chr5.1:166223-166242 | MS.gene92375:CDS | 55.0% | |
| GGATGTCCTAGACGTTCAGG+CGG | - | chr5.1:164996-165015 | MS.gene92375:intron | 55.0% | |
| TCAGTTGTCATCTTCGGCGG+TGG | - | chr5.1:164247-164266 | MS.gene92375:CDS | 55.0% | |
| TTCGACCCCTGCCCTGAAAT+GGG | - | chr5.1:164343-164362 | MS.gene92375:CDS | 55.0% | |
| ACCTCCTGGAATGCCAGTGC+AGG | - | chr5.1:164646-164665 | MS.gene92375:intron | 60.0% | |
| CCTCCTGGAATGCCAGTGCA+GGG | - | chr5.1:164647-164666 | MS.gene92375:intron | 60.0% | |
| CTTCGACCCCTGCCCTGAAA+TGG | - | chr5.1:164342-164361 | MS.gene92375:CDS | 60.0% | |
| ATCTCACGGCGGCTCCGACT+CGG | + | chr5.1:164211-164230 | None:intergenic | 65.0% | |
| CCTGGAATGCCAGTGCAGGG+TGG | - | chr5.1:164650-164669 | MS.gene92375:intron | 65.0% | |
| GGCAGGGGTCGAAGTCGAAG+AGG | + | chr5.1:164336-164355 | None:intergenic | 65.0% | |
| GTCATCTTCGGCGGTGGGAG+CGG | - | chr5.1:164253-164272 | MS.gene92375:CDS | 65.0% | |
| TAACAAAGGGGGGAGGGGGG+AGG | + | chr5.1:166157-166176 | None:intergenic | 65.0% | |
| TCGGAGCCGCCGTGAGATCA+TGG | - | chr5.1:164213-164232 | MS.gene92375:CDS | 65.0% | |
| ! | CCACCCTGCACTGGCATTCC+AGG | + | chr5.1:164653-164672 | None:intergenic | 65.0% |
| ! | CCCTGCACTGGCATTCCAGG+AGG | + | chr5.1:164650-164669 | None:intergenic | 65.0% |
| TCGGCGGTGGGAGCGGAAGA+TGG | - | chr5.1:164260-164279 | MS.gene92375:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 164200 | 166786 | 164200 | ID=MS.gene92375 |
| chr5.1 | mRNA | 164200 | 166786 | 164200 | ID=MS.gene92375.t1;Parent=MS.gene92375 |
| chr5.1 | exon | 166124 | 166786 | 166124 | ID=MS.gene92375.t1.exon1;Parent=MS.gene92375.t1 |
| chr5.1 | CDS | 166124 | 166786 | 166124 | ID=cds.MS.gene92375.t1;Parent=MS.gene92375.t1 |
| chr5.1 | exon | 165943 | 166041 | 165943 | ID=MS.gene92375.t1.exon2;Parent=MS.gene92375.t1 |
| chr5.1 | CDS | 165943 | 166041 | 165943 | ID=cds.MS.gene92375.t1;Parent=MS.gene92375.t1 |
| chr5.1 | exon | 165415 | 165526 | 165415 | ID=MS.gene92375.t1.exon3;Parent=MS.gene92375.t1 |
| chr5.1 | CDS | 165415 | 165526 | 165415 | ID=cds.MS.gene92375.t1;Parent=MS.gene92375.t1 |
| chr5.1 | exon | 164683 | 164729 | 164683 | ID=MS.gene92375.t1.exon4;Parent=MS.gene92375.t1 |
| chr5.1 | CDS | 164683 | 164729 | 164683 | ID=cds.MS.gene92375.t1;Parent=MS.gene92375.t1 |
| chr5.1 | exon | 164200 | 164562 | 164200 | ID=MS.gene92375.t1.exon5;Parent=MS.gene92375.t1 |
| chr5.1 | CDS | 164200 | 164562 | 164200 | ID=cds.MS.gene92375.t1;Parent=MS.gene92375.t1 |
| Gene Sequence |
| Protein sequence |
