Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93040.t1 | AET03427.2 | 97.6 | 884 | 21 | 0 | 1 | 884 | 1 | 884 | 0.00E+00 | 1628.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93040.t1 | Q9C5J3 | 72.0 | 893 | 206 | 10 | 1 | 884 | 1 | 858 | 0.0e+00 | 1144.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93040.t1 | G7LJD1 | 97.6 | 884 | 21 | 0 | 1 | 884 | 1 | 884 | 0.0e+00 | 1628.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052609 | MS.gene93040 | 0.80579 | 1.13E-49 | -1.69E-46 |
MS.gene058758 | MS.gene93040 | 0.80676 | 7.03E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93040.t1 | MTR_8g070490 | 99.095 | 884 | 8 | 0 | 1 | 884 | 1 | 884 | 0.0 | 1803 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93040.t1 | AT5G25060 | 74.887 | 888 | 189 | 9 | 1 | 884 | 1 | 858 | 0.0 | 1274 |
MS.gene93040.t1 | AT5G10800 | 72.393 | 815 | 197 | 10 | 58 | 870 | 60 | 848 | 0.0 | 1147 |
MS.gene93040.t1 | AT5G10800 | 72.280 | 772 | 187 | 9 | 58 | 827 | 60 | 806 | 0.0 | 1082 |
MS.gene93040.t1 | AT5G10800 | 68.824 | 680 | 161 | 8 | 218 | 870 | 1 | 656 | 0.0 | 902 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAATTTCTTGTTTGTTCT+TGG | 0.081420 | 8.2:-32423286 | MS.gene93040:CDS |
TTGTCTGGATTGAATCATTA+TGG | 0.178852 | 8.2:-32419133 | MS.gene93040:CDS |
GCATCAGTCAGGGTTCTTTC+AGG | 0.198005 | 8.2:+32421320 | None:intergenic |
CCAGATTCTTTGTCATGTTC+TGG | 0.199304 | 8.2:+32421486 | None:intergenic |
CCCTGAACTTGTTTGGTTGC+CGG | 0.212029 | 8.2:+32419207 | None:intergenic |
ACTCCACTTGCAGCCGTTTC+CGG | 0.230485 | 8.2:+32418488 | None:intergenic |
TATGAGTACGAATTGAAAAT+TGG | 0.246801 | 8.2:-32424388 | MS.gene93040:CDS |
ATTTACCTACTTCCCTTCTT+TGG | 0.259146 | 8.2:+32427249 | None:intergenic |
AACTTTCTTCTGCGCACTTT+TGG | 0.270397 | 8.2:-32424905 | MS.gene93040:CDS |
TCCTAATGTTCCTGATATAA+TGG | 0.272070 | 8.2:-32423428 | MS.gene93040:CDS |
TGGTTCTGCCAGCCTCTAAA+TGG | 0.275582 | 8.2:-32419003 | MS.gene93040:CDS |
CATCAACCCTACCTTCTTCT+TGG | 0.282984 | 8.2:+32427691 | None:intergenic |
CTGATTCATCAGCTTTAATA+AGG | 0.294293 | 8.2:+32418882 | None:intergenic |
CCCGGCAACCAAACAAGTTC+AGG | 0.318650 | 8.2:-32419208 | MS.gene93040:CDS |
GACTTGTATCGTAGCGTAAT+GGG | 0.320631 | 8.2:-32419732 | MS.gene93040:CDS |
CTACCCGTTATCATGATAAA+AGG | 0.322619 | 8.2:+32421724 | None:intergenic |
ATTAGAGAGGAGTCAGATAA+AGG | 0.331747 | 8.2:-32421258 | MS.gene93040:CDS |
ATCGTCTTTCAATTTATCAT+TGG | 0.346305 | 8.2:+32427494 | None:intergenic |
GATCCAAGTGGAAAGCTTCC+AGG | 0.351616 | 8.2:-32425084 | MS.gene93040:CDS |
TTAAGTTCAGGCTGTGGAAT+AGG | 0.354772 | 8.2:+32419055 | None:intergenic |
ACGTAAAGATTTGTAGTTTG+TGG | 0.358466 | 8.2:+32425042 | None:intergenic |
CACCAGAGTTCCCAGGTCTA+AGG | 0.362087 | 8.2:+32419518 | None:intergenic |
ATAGAGTCTCCAAACATAAT+AGG | 0.368470 | 8.2:+32423249 | None:intergenic |
GTGATCTTCTGCTCAATATC+AGG | 0.373983 | 8.2:+32419463 | None:intergenic |
ATCCTCCCGAGCCCATTTAG+AGG | 0.380485 | 8.2:+32418991 | None:intergenic |
CATCCCTCTGTGCATCAGTC+AGG | 0.382755 | 8.2:+32421309 | None:intergenic |
TAAGCCGATGCATTTCTTAC+AGG | 0.388670 | 8.2:+32419804 | None:intergenic |
TGACTAGGCACTGATGTTAC+TGG | 0.389098 | 8.2:+32423838 | None:intergenic |
AGGAGCATACCTATTATGTT+TGG | 0.389332 | 8.2:-32423258 | MS.gene93040:CDS |
TCGTCTTTCAATTTATCATT+GGG | 0.390983 | 8.2:+32427495 | None:intergenic |
CCTGAACCAATGGGATTGTC+TGG | 0.399432 | 8.2:-32419148 | MS.gene93040:CDS |
GGTAACACTGTTATCTTGTC+TGG | 0.400226 | 8.2:-32423874 | MS.gene93040:CDS |
TTAGAGAGGAGTCAGATAAA+GGG | 0.400809 | 8.2:-32421257 | MS.gene93040:CDS |
TGCCAGCCTCTAAATGGGCT+CGG | 0.402371 | 8.2:-32418997 | MS.gene93040:CDS |
ACTTCTGATGATGCTATTGT+TGG | 0.406941 | 8.2:-32419442 | MS.gene93040:CDS |
CCAGACAATCCCATTGGTTC+AGG | 0.408289 | 8.2:+32419148 | None:intergenic |
ATCAGGTGCGTCGCCACATA+TGG | 0.409931 | 8.2:+32419480 | None:intergenic |
TGCACCTCCACCAGGGCATA+TGG | 0.412157 | 8.2:-32424326 | MS.gene93040:CDS |
CCTGAACTTGTTTGGTTGCC+GGG | 0.412439 | 8.2:+32419208 | None:intergenic |
GGAGGTGTAACCATTATATC+AGG | 0.413269 | 8.2:+32423418 | None:intergenic |
TGTCTGGATTGAATCATTAT+GGG | 0.418136 | 8.2:-32419132 | MS.gene93040:CDS |
GAGTCTTCCTCTTGCTGAGC+TGG | 0.423026 | 8.2:-32419356 | MS.gene93040:CDS |
TGCTTTAGATGTTCATCCTC+AGG | 0.423363 | 8.2:+32423397 | None:intergenic |
ACCATTATATCAGGAACATT+AGG | 0.426846 | 8.2:+32423427 | None:intergenic |
CAAATTTACAATTCCAAGGC+TGG | 0.431077 | 8.2:-32418219 | MS.gene93040:CDS |
TTTGCGAAGGCTTTAAGTTC+AGG | 0.431231 | 8.2:+32419043 | None:intergenic |
ATTATCTTCACACTAGCAAT+AGG | 0.437903 | 8.2:+32424872 | None:intergenic |
TATTACTGCTGAAGCCCTTA+AGG | 0.443187 | 8.2:-32419706 | MS.gene93040:intron |
CCAGAACATGACAAAGAATC+TGG | 0.444018 | 8.2:-32421486 | MS.gene93040:CDS |
TCTTTCCCCTTGGTTGCCAA+TGG | 0.445718 | 8.2:+32425763 | None:intergenic |
CCCTTGGTTGCCAATGGAGG+CGG | 0.447791 | 8.2:+32425769 | None:intergenic |
AAGTTCTGATGCACCGGAAA+CGG | 0.450649 | 8.2:-32418501 | MS.gene93040:CDS |
ACAAACAAGAAATTGAAAAG+AGG | 0.450862 | 8.2:+32423292 | None:intergenic |
CAATGGCGTGATGGGCGTAT+TGG | 0.452159 | 8.2:-32425520 | MS.gene93040:CDS |
CCACTTGGATCAAAATCATC+AGG | 0.453491 | 8.2:+32425096 | None:intergenic |
GTTATCTTGTCTGGCCCATC+CGG | 0.455434 | 8.2:-32423865 | MS.gene93040:CDS |
TTTCAAGGGGATAACGCTCC+CGG | 0.457637 | 8.2:-32427552 | MS.gene93040:CDS |
CTTCGCTCCTCCTCTGTTCG+AGG | 0.458375 | 8.2:+32424845 | None:intergenic |
TCTGGCTCCACACATGCTGC+TGG | 0.459729 | 8.2:-32421468 | MS.gene93040:CDS |
CTTGTTTGTTCTTGGCTCGA+AGG | 0.461155 | 8.2:-32423278 | MS.gene93040:CDS |
TTCCTTAGACCTGGGAACTC+TGG | 0.461762 | 8.2:-32419520 | MS.gene93040:CDS |
GAGACTCTATTCATTTGCTC+AGG | 0.464075 | 8.2:-32423236 | MS.gene93040:intron |
GGTTCTGCCAGCCTCTAAAT+GGG | 0.465794 | 8.2:-32419002 | MS.gene93040:CDS |
GCTCCTTCCAGCAGCATGTG+TGG | 0.466060 | 8.2:+32421461 | None:intergenic |
CTCCTGATGGCCATATGCCC+TGG | 0.469428 | 8.2:+32424316 | None:intergenic |
ATATGCCCTGGTGGAGGTGC+AGG | 0.469434 | 8.2:+32424328 | None:intergenic |
CACCAGGGCATATGGCCATC+AGG | 0.469664 | 8.2:-32424318 | MS.gene93040:CDS |
GCCCATCACGCCATTGTTCA+CGG | 0.471573 | 8.2:+32425527 | None:intergenic |
TGACTTGTATCGTAGCGTAA+TGG | 0.472737 | 8.2:-32419733 | MS.gene93040:CDS |
TCTTCTCTATGCTTCTGAAA+TGG | 0.474368 | 8.2:+32427722 | None:intergenic |
TGCACAGAGGGATGAGTTTG+AGG | 0.475067 | 8.2:-32421300 | MS.gene93040:CDS |
TCGCGAGTCTCTTGAAGAAA+GGG | 0.476086 | 8.2:-32418554 | MS.gene93040:CDS |
CACAATGGATTGTCACTTGT+TGG | 0.476389 | 8.2:-32419319 | MS.gene93040:CDS |
TTAAAACTCTCCATTACATC+AGG | 0.476488 | 8.2:+32419756 | None:intergenic |
TTGGATAACGCCGATGCAGC+TGG | 0.478537 | 8.2:-32421218 | MS.gene93040:CDS |
GAATTTGTAGAGTCATTTCA+AGG | 0.479730 | 8.2:-32427567 | MS.gene93040:CDS |
AGCAACATTACCTGATGTAA+TGG | 0.483584 | 8.2:-32419766 | MS.gene93040:CDS |
ATAGGAAGGGTTGGCGCTAA+AGG | 0.485881 | 8.2:+32419073 | None:intergenic |
GATGATGAGCAAGGGAAAGG+TGG | 0.488824 | 8.2:-32418959 | MS.gene93040:CDS |
GGGTTAAGCTACTCATCCTC+TGG | 0.490697 | 8.2:-32418926 | MS.gene93040:CDS |
CAAGATGCTGCATTGGCAAT+GGG | 0.491457 | 8.2:-32419406 | MS.gene93040:CDS |
CATGAACAGAGCTGATGGAC+AGG | 0.492243 | 8.2:-32424792 | MS.gene93040:CDS |
ACCGTGAACAATGGCGTGAT+GGG | 0.493727 | 8.2:-32425528 | MS.gene93040:CDS |
GCAGATAGTTGAAGTGTTGA+CGG | 0.495736 | 8.2:-32419913 | MS.gene93040:intron |
AAACGGCTGCAAGTGGAGTA+CGG | 0.497826 | 8.2:-32418484 | MS.gene93040:CDS |
GCATATGGCCATCAGGAGTA+AGG | 0.499445 | 8.2:-32424311 | MS.gene93040:CDS |
CCAAGATGCTGCATTGGCAA+TGG | 0.499531 | 8.2:-32419407 | MS.gene93040:CDS |
CACATGCTGCTGGAAGGAGC+AGG | 0.500136 | 8.2:-32421458 | MS.gene93040:CDS |
AAAACAAATTTACAATTCCA+AGG | 0.502871 | 8.2:-32418223 | MS.gene93040:CDS |
ATCGCGAGTCTCTTGAAGAA+AGG | 0.504484 | 8.2:-32418555 | MS.gene93040:CDS |
GCCAGCCTCTAAATGGGCTC+GGG | 0.505121 | 8.2:-32418996 | MS.gene93040:CDS |
TTTATCATGATAACGGGTAG+TGG | 0.505165 | 8.2:-32421721 | MS.gene93040:CDS |
TTCCTCTTGCTGAGCTGGAA+AGG | 0.505962 | 8.2:-32419351 | MS.gene93040:CDS |
GCCTAGTCAGAACTCTGAAC+TGG | 0.506045 | 8.2:-32423824 | MS.gene93040:intron |
AACGGCTGCAAGTGGAGTAC+GGG | 0.506259 | 8.2:-32418483 | MS.gene93040:CDS |
AGTACGAATTGAAAATTGGA+TGG | 0.506754 | 8.2:-32424384 | MS.gene93040:CDS |
TCACCGTCATCAAATGATCC+TGG | 0.507507 | 8.2:+32425066 | None:intergenic |
GCTATTATGGAGAGGGGTCG+TGG | 0.507569 | 8.2:-32423319 | MS.gene93040:CDS |
GATAATGTGGCCTCGAACAG+AGG | 0.509034 | 8.2:-32424855 | MS.gene93040:CDS |
TCTGATGATGCTATTGTTGG+TGG | 0.512812 | 8.2:-32419439 | MS.gene93040:CDS |
GACCGTGAACAATGGCGTGA+TGG | 0.513695 | 8.2:-32425529 | MS.gene93040:CDS |
ACCGCCTCCATTGGCAACCA+AGG | 0.515288 | 8.2:-32425770 | MS.gene93040:CDS |
AGGTAATGTTGCTTCAAACT+TGG | 0.516405 | 8.2:+32419776 | None:intergenic |
GATGAAGATTTGCAGTTGCA+AGG | 0.516431 | 8.2:-32419109 | MS.gene93040:CDS |
TTCCCCTTGGTTGCCAATGG+AGG | 0.516871 | 8.2:+32425766 | None:intergenic |
GCATTACCTGCACCTCCACC+AGG | 0.517517 | 8.2:-32424334 | MS.gene93040:CDS |
AGAGGAGGAGGCCAAGAAGA+AGG | 0.517599 | 8.2:-32427702 | MS.gene93040:intron |
CGTTGGAAATCTCTCACCCC+AGG | 0.518189 | 8.2:-32425022 | MS.gene93040:intron |
GGCTGTGGAATAGGAAGGGT+TGG | 0.518293 | 8.2:+32419064 | None:intergenic |
TGAACAAGCTATTATGGAGA+GGG | 0.518557 | 8.2:-32423326 | MS.gene93040:CDS |
GACCGACCAAGATGCTGCAT+TGG | 0.519184 | 8.2:-32419413 | MS.gene93040:CDS |
AGGGGTTTCTTTAAGTGTCA+AGG | 0.520494 | 8.2:+32419887 | None:intergenic |
TCCCGAGCCCATTTAGAGGC+TGG | 0.522442 | 8.2:+32418995 | None:intergenic |
CCATTGCCAATGCAGCATCT+TGG | 0.523128 | 8.2:+32419407 | None:intergenic |
ATCCCTCTGTGCATCAGTCA+GGG | 0.525019 | 8.2:+32421310 | None:intergenic |
ATCTGAAAAGAGAAACCAAT+CGG | 0.526156 | 8.2:+32419570 | None:intergenic |
GAGCCACTTTCCTTAGACCT+GGG | 0.526431 | 8.2:-32419528 | MS.gene93040:CDS |
TTGAACAAGCTATTATGGAG+AGG | 0.533340 | 8.2:-32423327 | MS.gene93040:CDS |
GATTTGCAGTTGCAAGGCAA+AGG | 0.534092 | 8.2:-32419103 | MS.gene93040:CDS |
GTACGAATTGAAAATTGGAT+GGG | 0.534171 | 8.2:-32424383 | MS.gene93040:CDS |
TACTACCTCGCCAGCTGCAT+CGG | 0.536239 | 8.2:+32421208 | None:intergenic |
CCGGCAACCAAACAAGTTCA+GGG | 0.536580 | 8.2:-32419207 | MS.gene93040:CDS |
ATGATGAGCAAGGGAAAGGT+GGG | 0.537175 | 8.2:-32418958 | MS.gene93040:CDS |
AAGTGCAGATCCTGAACCAA+TGG | 0.537549 | 8.2:-32419158 | MS.gene93040:CDS |
AGAGGTTATGAACTAGATGA+TGG | 0.538666 | 8.2:-32419241 | MS.gene93040:CDS |
AGAGCCACTTTCCTTAGACC+TGG | 0.540500 | 8.2:-32419529 | MS.gene93040:CDS |
ATCCTCTGGTAGTGAGAATG+TGG | 0.540621 | 8.2:-32418912 | MS.gene93040:CDS |
CACTGATGTTACTGGTGGAC+CGG | 0.543484 | 8.2:+32423846 | None:intergenic |
GCTGCATTGGCAATGGGTCG+AGG | 0.544874 | 8.2:-32419400 | MS.gene93040:CDS |
CAAACAAGAAATTGAAAAGA+GGG | 0.545429 | 8.2:+32423293 | None:intergenic |
CAGACAAAAGTTGAGACGCT+TGG | 0.546785 | 8.2:-32418596 | MS.gene93040:CDS |
GCACCGGAAACGGCTGCAAG+TGG | 0.546878 | 8.2:-32418491 | MS.gene93040:CDS |
GCTCCACACATGCTGCTGGA+AGG | 0.547465 | 8.2:-32421464 | MS.gene93040:CDS |
GATGTTACTGGTGGACCGGA+TGG | 0.548153 | 8.2:+32423850 | None:intergenic |
GATGATGGATTGAAATATCC+CGG | 0.548432 | 8.2:-32419226 | MS.gene93040:CDS |
TCAAGCAAGAGCAAGAGATG+AGG | 0.549339 | 8.2:-32425567 | MS.gene93040:CDS |
ACTCTACAAATTCAGCATAC+AGG | 0.550874 | 8.2:+32427577 | None:intergenic |
ATACCATTCCACTCCATATG+TGG | 0.551102 | 8.2:-32419493 | MS.gene93040:CDS |
CGCCTTTCCAGCTCAGCAAG+AGG | 0.552230 | 8.2:+32419349 | None:intergenic |
ATGGCCATATGCCCTGGTGG+AGG | 0.552320 | 8.2:+32424322 | None:intergenic |
TGTTGGTGGTAGAGAAATGA+TGG | 0.552341 | 8.2:-32419302 | MS.gene93040:CDS |
TAGAGAGGAGTCAGATAAAG+GGG | 0.552503 | 8.2:-32421256 | MS.gene93040:CDS |
CAAGCAAGAGCAAGAGATGA+GGG | 0.553488 | 8.2:-32425566 | MS.gene93040:CDS |
GAACAGAGGAGGAGCGAAGG+CGG | 0.553646 | 8.2:-32424841 | MS.gene93040:CDS |
TTCAAGGGGATAACGCTCCC+GGG | 0.553689 | 8.2:-32427551 | MS.gene93040:CDS |
CTCGAACAGAGGAGGAGCGA+AGG | 0.554164 | 8.2:-32424844 | MS.gene93040:CDS |
GGGGTATCTGGTCCAAAGAA+GGG | 0.555550 | 8.2:-32427261 | MS.gene93040:CDS |
AACCCTGACTGATGCACAGA+GGG | 0.556454 | 8.2:-32421312 | MS.gene93040:CDS |
TACAATGGCTCTGTATGTCT+TGG | 0.557895 | 8.2:-32423365 | MS.gene93040:CDS |
CTGGTCCAAAGAAGGGAAGT+AGG | 0.561515 | 8.2:-32427254 | MS.gene93040:intron |
GAAGCATAGAGAAGAGGAGG+AGG | 0.563336 | 8.2:-32427714 | MS.gene93040:CDS |
CAATACCTCCTTACTCCTGA+TGG | 0.563404 | 8.2:+32424303 | None:intergenic |
AGAAGAAAGTTCTGATGCAC+CGG | 0.564799 | 8.2:-32418507 | MS.gene93040:CDS |
AAAGCATGTAATTGATACAA+TGG | 0.564924 | 8.2:-32423380 | MS.gene93040:CDS |
GTTCAGGCTGTGGAATAGGA+AGG | 0.566910 | 8.2:+32419059 | None:intergenic |
AGGTAGTTCATCAAAACGAC+TGG | 0.567061 | 8.2:+32425116 | None:intergenic |
CTGATGGCCATATGCCCTGG+TGG | 0.571571 | 8.2:+32424319 | None:intergenic |
AGTGATGATGAGCAAGGGAA+AGG | 0.571659 | 8.2:-32418962 | MS.gene93040:CDS |
CAGGTAATGCTTGTGATGGG+AGG | 0.571769 | 8.2:+32424347 | None:intergenic |
TTCAATCCAGACAATCCCAT+TGG | 0.572257 | 8.2:+32419142 | None:intergenic |
GATCCTGGAAGCTTTCCACT+TGG | 0.572296 | 8.2:+32425081 | None:intergenic |
AGTGCAGATCCTGAACCAAT+GGG | 0.572934 | 8.2:-32419157 | MS.gene93040:CDS |
CCGCCTCCATTGGCAACCAA+GGG | 0.573253 | 8.2:-32425769 | MS.gene93040:CDS |
AAGGCTTTAAGTTCAGGCTG+TGG | 0.573819 | 8.2:+32419049 | None:intergenic |
TTATCAGATTCTAATGAAGA+TGG | 0.576586 | 8.2:-32418460 | MS.gene93040:CDS |
AATGGAGGCGGTATAAAAGA+TGG | 0.577808 | 8.2:+32425781 | None:intergenic |
ACAAAAGTTGAGACGCTTGG+AGG | 0.577945 | 8.2:-32418593 | MS.gene93040:CDS |
TAAATTGAAAGACGATTCTG+AGG | 0.578208 | 8.2:-32427487 | MS.gene93040:CDS |
TGCTCCTGTAAGAAATGCAT+CGG | 0.578666 | 8.2:-32419808 | MS.gene93040:CDS |
GGTAGTGAGAATGTGGGTGA+TGG | 0.582546 | 8.2:-32418905 | MS.gene93040:CDS |
CAAACTACAAATCTTTACGT+TGG | 0.585435 | 8.2:-32425039 | MS.gene93040:CDS |
TACGAATTGAAAATTGGATG+GGG | 0.586713 | 8.2:-32424382 | MS.gene93040:CDS |
GGTATTACACCAGAGTTCCC+AGG | 0.587237 | 8.2:+32419511 | None:intergenic |
AGCCTCTAAATGGGCTCGGG+AGG | 0.587799 | 8.2:-32418993 | MS.gene93040:CDS |
TTCATTCCACTGTCAGCATG+AGG | 0.588358 | 8.2:+32418833 | None:intergenic |
TGCCAATGCAGCATCTTGGT+CGG | 0.589559 | 8.2:+32419411 | None:intergenic |
GTGCAGGTAATGCTTGTGAT+GGG | 0.591523 | 8.2:+32424344 | None:intergenic |
TTCAGGCTGTGGAATAGGAA+GGG | 0.591795 | 8.2:+32419060 | None:intergenic |
TAACGCCGATGCAGCTGGCG+AGG | 0.592926 | 8.2:-32421213 | MS.gene93040:intron |
TCAGAAGCATAGAGAAGAGG+AGG | 0.593309 | 8.2:-32427717 | MS.gene93040:CDS |
CGAACAAAAGTCTTTGACCC+GGG | 0.593699 | 8.2:+32427534 | None:intergenic |
GAAATCAAGACCGTGAACAA+TGG | 0.594224 | 8.2:-32425537 | MS.gene93040:CDS |
GTTCCCAGGTCTAAGGAAAG+TGG | 0.595195 | 8.2:+32419525 | None:intergenic |
ACTTGTATCGTAGCGTAATG+GGG | 0.595323 | 8.2:-32419731 | MS.gene93040:CDS |
AATTTGTAGAGTCATTTCAA+GGG | 0.595455 | 8.2:-32427566 | MS.gene93040:CDS |
ACAGGTGAAAAGTCCAAAGA+GGG | 0.596196 | 8.2:-32427282 | MS.gene93040:intron |
TCGAACAAAAGTCTTTGACC+CGG | 0.596727 | 8.2:+32427533 | None:intergenic |
CTCTTGCTGAGCTGGAAAGG+CGG | 0.597489 | 8.2:-32419348 | MS.gene93040:CDS |
GCATTCATGAACAGAGCTGA+TGG | 0.598946 | 8.2:-32424797 | MS.gene93040:CDS |
GAAAGGCGGTGCCGACACAA+TGG | 0.601637 | 8.2:-32419334 | MS.gene93040:CDS |
GGTGCAGGTAATGCTTGTGA+TGG | 0.603144 | 8.2:+32424343 | None:intergenic |
CTATTCCTACTAAAATTGCA+AGG | 0.606077 | 8.2:-32419866 | MS.gene93040:CDS |
ACGGTTGCTAAGTCTTGAAG+AGG | 0.608762 | 8.2:-32419275 | MS.gene93040:CDS |
CTTCCAGGATCATTTGATGA+CGG | 0.609890 | 8.2:-32425069 | MS.gene93040:CDS |
CGCGAGTCTCTTGAAGAAAG+GGG | 0.612226 | 8.2:-32418553 | MS.gene93040:CDS |
TATTAAAGCTGATGAATCAG+AGG | 0.614324 | 8.2:-32418879 | MS.gene93040:CDS |
ATTCCACTGTCAGCATGAGG+TGG | 0.616167 | 8.2:+32418836 | None:intergenic |
TTTCCACCTCATGCTGACAG+TGG | 0.616317 | 8.2:-32418839 | MS.gene93040:CDS |
TCGCCACATATGGAGTGGAA+TGG | 0.616332 | 8.2:+32419490 | None:intergenic |
ATGGCTCTGTATGTCTTGGA+CGG | 0.617335 | 8.2:-32423361 | MS.gene93040:CDS |
AGGGTGATACTCTTCAAAGA+TGG | 0.618267 | 8.2:-32421756 | MS.gene93040:CDS |
ATGTTACTGGTGGACCGGAT+GGG | 0.618665 | 8.2:+32423851 | None:intergenic |
ATTTGTAGAGTCATTTCAAG+GGG | 0.624518 | 8.2:-32427565 | MS.gene93040:CDS |
GCTCTGTATGTCTTGGACGG+AGG | 0.624604 | 8.2:-32423358 | MS.gene93040:CDS |
GTGCGTCGCCACATATGGAG+TGG | 0.624678 | 8.2:+32419485 | None:intergenic |
TCATGATAACGGGTAGTGGA+AGG | 0.626361 | 8.2:-32421717 | MS.gene93040:intron |
GACAGGTGAAAAGTCCAAAG+AGG | 0.632863 | 8.2:-32427283 | MS.gene93040:intron |
GATTCTAATGAAGATGGTCA+AGG | 0.633769 | 8.2:-32418454 | MS.gene93040:CDS |
TTAGCTATCGGTAATGCAGG+AGG | 0.634260 | 8.2:+32421513 | None:intergenic |
GATGAGAGTGATGATGAGCA+AGG | 0.636757 | 8.2:-32418968 | MS.gene93040:CDS |
GAAAGAGGAAGAAAAGCCAA+AGG | 0.636929 | 8.2:-32425638 | MS.gene93040:CDS |
TTGCTAGTGTGAAGATAATG+TGG | 0.639804 | 8.2:-32424868 | MS.gene93040:CDS |
ATTTCAGAAGCATAGAGAAG+AGG | 0.641232 | 8.2:-32427720 | MS.gene93040:CDS |
ACATGCTGCTGGAAGGAGCA+GGG | 0.642635 | 8.2:-32421457 | MS.gene93040:intron |
CAAGTGACAATCCATTGTGT+CGG | 0.643715 | 8.2:+32419323 | None:intergenic |
GTGGAATGAATGAAGAGCAG+AGG | 0.645629 | 8.2:-32418820 | MS.gene93040:intron |
GTCTGGATTGAATCATTATG+GGG | 0.646273 | 8.2:-32419131 | MS.gene93040:CDS |
ATGAGAGTGATGATGAGCAA+GGG | 0.646343 | 8.2:-32418967 | MS.gene93040:CDS |
GAACAAGCTATTATGGAGAG+GGG | 0.651754 | 8.2:-32423325 | MS.gene93040:CDS |
CTAGGCACTGATGTTACTGG+TGG | 0.652011 | 8.2:+32423841 | None:intergenic |
TGCGTGCTTTAACATTAGAG+AGG | 0.652061 | 8.2:-32421271 | MS.gene93040:CDS |
TATAATGGTTACACCTCCTG+AGG | 0.655221 | 8.2:-32423413 | MS.gene93040:CDS |
ACCAGTTCAGAGTTCTGACT+AGG | 0.656276 | 8.2:+32423823 | None:intergenic |
AATGTGGCCTCGAACAGAGG+AGG | 0.658471 | 8.2:-32424852 | MS.gene93040:CDS |
AGGTAATGCTTGTGATGGGA+GGG | 0.660903 | 8.2:+32424348 | None:intergenic |
CGCCTCCATTGGCAACCAAG+GGG | 0.661360 | 8.2:-32425768 | MS.gene93040:CDS |
GAAGAGGCAGAAAAGCAAAG+AGG | 0.662361 | 8.2:-32419259 | MS.gene93040:CDS |
ACCCACATTCTCACTACCAG+AGG | 0.671174 | 8.2:+32418910 | None:intergenic |
TTTAGATGTTCATCCTCAGG+AGG | 0.673457 | 8.2:+32423400 | None:intergenic |
GCGAGTCTCTTGAAGAAAGG+GGG | 0.675662 | 8.2:-32418552 | MS.gene93040:CDS |
AATGGATTGTCACTTGTTGG+TGG | 0.678805 | 8.2:-32419316 | MS.gene93040:CDS |
GCTGCAAAAGACGAAATGCA+AGG | 0.679930 | 8.2:-32424770 | MS.gene93040:intron |
CGAAGGCGGCAAAGAAACTG+TGG | 0.680275 | 8.2:-32424827 | MS.gene93040:CDS |
TGAGTTCGTTCTCCATTACG+AGG | 0.681143 | 8.2:-32427754 | MS.gene93040:CDS |
GTAGAGAAATGATGGTTGCA+CGG | 0.681414 | 8.2:-32419294 | MS.gene93040:CDS |
TCCTCTGGTAGTGAGAATGT+GGG | 0.681678 | 8.2:-32418911 | MS.gene93040:CDS |
AGGTGAAAAGTCCAAAGAGG+GGG | 0.694329 | 8.2:-32427280 | MS.gene93040:CDS |
AAATTGAAAGACGATTCTGA+GGG | 0.698071 | 8.2:-32427486 | MS.gene93040:intron |
TATGGCCATCAGGAGTAAGG+AGG | 0.698857 | 8.2:-32424308 | MS.gene93040:intron |
AGAGAGGAGTCAGATAAAGG+GGG | 0.703859 | 8.2:-32421255 | MS.gene93040:CDS |
CATTACCTGCACCTCCACCA+GGG | 0.708384 | 8.2:-32424333 | MS.gene93040:CDS |
GAACCCTGACTGATGCACAG+AGG | 0.732125 | 8.2:-32421313 | MS.gene93040:CDS |
CAGGTGAAAAGTCCAAAGAG+GGG | 0.732810 | 8.2:-32427281 | MS.gene93040:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 32418208 | 32427777 | 32418208 | ID=MS.gene93040 |
chr8.2 | mRNA | 32418208 | 32427777 | 32418208 | ID=MS.gene93040.t1;Parent=MS.gene93040 |
chr8.2 | exon | 32427703 | 32427777 | 32427703 | ID=MS.gene93040.t1.exon1;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32427703 | 32427777 | 32427703 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32427487 | 32427622 | 32427487 | ID=MS.gene93040.t1.exon2;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32427487 | 32427622 | 32427487 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32427255 | 32427300 | 32427255 | ID=MS.gene93040.t1.exon3;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32427255 | 32427300 | 32427255 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32425750 | 32425810 | 32425750 | ID=MS.gene93040.t1.exon4;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32425750 | 32425810 | 32425750 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32425507 | 32425659 | 32425507 | ID=MS.gene93040.t1.exon5;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32425507 | 32425659 | 32425507 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32425023 | 32425139 | 32425023 | ID=MS.gene93040.t1.exon6;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32425023 | 32425139 | 32425023 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32424771 | 32424936 | 32424771 | ID=MS.gene93040.t1.exon7;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32424771 | 32424936 | 32424771 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32424309 | 32424421 | 32424309 | ID=MS.gene93040.t1.exon8;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32424309 | 32424421 | 32424309 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32423825 | 32423896 | 32423825 | ID=MS.gene93040.t1.exon9;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32423825 | 32423896 | 32423825 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32423237 | 32423458 | 32423237 | ID=MS.gene93040.t1.exon10;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32423237 | 32423458 | 32423237 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32421718 | 32421776 | 32421718 | ID=MS.gene93040.t1.exon11;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32421718 | 32421776 | 32421718 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32421458 | 32421542 | 32421458 | ID=MS.gene93040.t1.exon12;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32421458 | 32421542 | 32421458 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32421214 | 32421351 | 32421214 | ID=MS.gene93040.t1.exon13;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32421214 | 32421351 | 32421214 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32419707 | 32419931 | 32419707 | ID=MS.gene93040.t1.exon14;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32419707 | 32419931 | 32419707 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32418821 | 32419623 | 32418821 | ID=MS.gene93040.t1.exon15;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32418821 | 32419623 | 32418821 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32418449 | 32418615 | 32418449 | ID=MS.gene93040.t1.exon16;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32418449 | 32418615 | 32418449 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
chr8.2 | exon | 32418208 | 32418296 | 32418208 | ID=MS.gene93040.t1.exon17;Parent=MS.gene93040.t1 |
chr8.2 | CDS | 32418208 | 32418296 | 32418208 | ID=cds.MS.gene93040.t1;Parent=MS.gene93040.t1 |
Gene Sequence |
Protein sequence |