Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93112.t1 | XP_013470395.1 | 97.2 | 536 | 11 | 2 | 1 | 536 | 5 | 536 | 7.80E-290 | 1005.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93112.t1 | O49696 | 55.2 | 531 | 200 | 6 | 21 | 521 | 27 | 549 | 8.5e-152 | 538.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93112.t1 | A0A072VSP9 | 97.2 | 536 | 11 | 2 | 1 | 536 | 5 | 536 | 5.6e-290 | 1005.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene93112 | 0.80024 | 1.58E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93112.t1 | MTR_1g115140 | 97.201 | 536 | 11 | 2 | 1 | 536 | 5 | 536 | 0.0 | 1075 |
| MS.gene93112.t1 | MTR_1g115175 | 83.643 | 538 | 80 | 6 | 1 | 536 | 1 | 532 | 0.0 | 917 |
| MS.gene93112.t1 | MTR_1g115190 | 82.495 | 537 | 85 | 4 | 3 | 535 | 4 | 535 | 0.0 | 890 |
| MS.gene93112.t1 | MTR_5g014310 | 58.582 | 536 | 213 | 5 | 2 | 536 | 22 | 549 | 0.0 | 604 |
| MS.gene93112.t1 | MTR_4g098570 | 58.922 | 538 | 203 | 6 | 1 | 536 | 13 | 534 | 0.0 | 602 |
| MS.gene93112.t1 | MTR_4g098610 | 56.691 | 538 | 215 | 4 | 1 | 536 | 13 | 534 | 0.0 | 562 |
| MS.gene93112.t1 | MTR_1g077660 | 41.406 | 384 | 214 | 4 | 12 | 394 | 25 | 398 | 4.54e-100 | 310 |
| MS.gene93112.t1 | MTR_1g077670 | 41.918 | 365 | 198 | 5 | 16 | 377 | 35 | 388 | 4.39e-97 | 303 |
| MS.gene93112.t1 | MTR_0710s0020 | 82.778 | 180 | 31 | 0 | 3 | 182 | 4 | 183 | 1.28e-96 | 291 |
| MS.gene93112.t1 | MTR_4g051575 | 43.452 | 336 | 180 | 2 | 22 | 350 | 19 | 351 | 4.53e-90 | 285 |
| MS.gene93112.t1 | MTR_7g106260 | 43.860 | 342 | 186 | 2 | 37 | 377 | 42 | 378 | 6.85e-86 | 274 |
| MS.gene93112.t1 | MTR_2g087288 | 38.701 | 354 | 209 | 2 | 1 | 351 | 1 | 349 | 7.32e-83 | 265 |
| MS.gene93112.t1 | MTR_8g104110 | 30.980 | 510 | 320 | 9 | 23 | 504 | 50 | 555 | 6.28e-78 | 256 |
| MS.gene93112.t1 | MTR_7g094770 | 39.172 | 314 | 181 | 4 | 42 | 351 | 61 | 368 | 3.40e-76 | 248 |
| MS.gene93112.t1 | MTR_8g104130 | 31.579 | 494 | 303 | 10 | 37 | 504 | 59 | 543 | 5.62e-74 | 245 |
| MS.gene93112.t1 | MTR_1g111250 | 31.976 | 491 | 296 | 11 | 34 | 504 | 71 | 543 | 2.90e-72 | 240 |
| MS.gene93112.t1 | MTR_2g087285 | 38.123 | 341 | 198 | 3 | 21 | 351 | 11 | 348 | 1.23e-71 | 236 |
| MS.gene93112.t1 | MTR_6g084680 | 31.862 | 521 | 310 | 13 | 17 | 504 | 68 | 576 | 3.59e-71 | 238 |
| MS.gene93112.t1 | MTR_8g104120 | 31.774 | 513 | 314 | 13 | 23 | 504 | 46 | 553 | 6.26e-68 | 229 |
| MS.gene93112.t1 | MTR_4g051575 | 42.130 | 216 | 121 | 2 | 136 | 350 | 5 | 217 | 8.09e-50 | 175 |
| MS.gene93112.t1 | MTR_1g110380 | 44.030 | 134 | 23 | 3 | 81 | 214 | 1 | 82 | 2.74e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93112.t1 | AT4G17970 | 55.179 | 531 | 200 | 6 | 21 | 521 | 27 | 549 | 0.0 | 578 |
| MS.gene93112.t1 | AT5G46610 | 53.959 | 543 | 209 | 8 | 1 | 521 | 12 | 535 | 0.0 | 562 |
| MS.gene93112.t1 | AT5G46600 | 54.251 | 494 | 204 | 7 | 31 | 505 | 36 | 526 | 0.0 | 528 |
| MS.gene93112.t1 | AT5G46610 | 50.460 | 543 | 204 | 9 | 1 | 521 | 12 | 511 | 6.10e-178 | 511 |
| MS.gene93112.t1 | AT5G46610 | 47.698 | 543 | 196 | 9 | 1 | 521 | 12 | 488 | 2.51e-161 | 468 |
| MS.gene93112.t1 | AT4G00910 | 32.193 | 497 | 268 | 7 | 20 | 511 | 45 | 477 | 5.56e-96 | 300 |
| MS.gene93112.t1 | AT1G08440 | 42.056 | 321 | 186 | 0 | 31 | 351 | 7 | 327 | 2.35e-82 | 265 |
| MS.gene93112.t1 | AT3G11680 | 40.556 | 360 | 201 | 3 | 33 | 392 | 34 | 380 | 4.38e-77 | 251 |
| MS.gene93112.t1 | AT3G11680 | 40.556 | 360 | 201 | 3 | 33 | 392 | 32 | 378 | 5.65e-77 | 251 |
| MS.gene93112.t1 | AT3G18440 | 31.961 | 510 | 298 | 12 | 31 | 504 | 73 | 569 | 9.56e-77 | 253 |
| MS.gene93112.t1 | AT1G08430 | 40.123 | 324 | 191 | 1 | 31 | 351 | 7 | 330 | 3.25e-75 | 246 |
| MS.gene93112.t1 | AT2G27240 | 39.496 | 357 | 200 | 4 | 31 | 382 | 7 | 352 | 2.40e-74 | 244 |
| MS.gene93112.t1 | AT2G27240 | 37.566 | 378 | 204 | 4 | 31 | 382 | 7 | 378 | 1.49e-72 | 240 |
| MS.gene93112.t1 | AT1G18420 | 29.511 | 532 | 329 | 12 | 9 | 504 | 56 | 577 | 1.06e-71 | 239 |
| MS.gene93112.t1 | AT1G18420 | 30.020 | 503 | 307 | 11 | 38 | 504 | 1 | 494 | 1.58e-70 | 234 |
| MS.gene93112.t1 | AT1G68600 | 30.957 | 533 | 319 | 16 | 1 | 507 | 23 | 532 | 6.05e-69 | 231 |
| MS.gene93112.t1 | AT2G17470 | 31.148 | 488 | 307 | 11 | 37 | 504 | 31 | 509 | 1.30e-67 | 228 |
| MS.gene93112.t1 | AT2G17470 | 31.148 | 488 | 307 | 11 | 37 | 504 | 53 | 531 | 2.13e-67 | 228 |
| MS.gene93112.t1 | AT1G25480 | 30.368 | 517 | 318 | 14 | 11 | 504 | 44 | 541 | 2.43e-67 | 227 |
| MS.gene93112.t1 | AT4G17585 | 61.429 | 70 | 22 | 2 | 21 | 89 | 27 | 92 | 6.16e-22 | 92.8 |
Find 103 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGTGAGGAGGGAAATT+TGG | 0.194186 | 1.1:+80598782 | MS.gene93112:CDS |
| TTCGATTTACTTCCAATTAC+TGG | 0.207825 | 1.1:-80600815 | None:intergenic |
| GATAATGACTTGCCTTCTTA+TGG | 0.225915 | 1.1:+80601112 | MS.gene93112:CDS |
| CAATCCTCTGTTTAGTCCTT+TGG | 0.226640 | 1.1:-80599095 | None:intergenic |
| TGTATCTTTGTTGTATCTAA+TGG | 0.228111 | 1.1:+80598870 | MS.gene93112:CDS |
| AGCCTCGTAGCACTTGTAAA+TGG | 0.243891 | 1.1:-80599862 | None:intergenic |
| GATTGTTGTTCCCCAGTAAT+TGG | 0.275194 | 1.1:+80600803 | MS.gene93112:CDS |
| AAGAAGTATCAAAAGTTCTA+AGG | 0.276507 | 1.1:+80600540 | MS.gene93112:CDS |
| GTTGGCTAAGCCTTCAAGTT+TGG | 0.288017 | 1.1:-80599613 | None:intergenic |
| AGGTCTTCCCCTGACCAATT+TGG | 0.290568 | 1.1:-80599573 | None:intergenic |
| GTCTATTTGTATTTCCAAAT+TGG | 0.292616 | 1.1:+80599559 | MS.gene93112:CDS |
| CGATACAATTATCAAATTAA+AGG | 0.294901 | 1.1:-80599451 | None:intergenic |
| TGAGCATTTCTTAGTATTGT+TGG | 0.297879 | 1.1:-80598707 | None:intergenic |
| GTCATAATTCTTCTTGATAT+AGG | 0.301733 | 1.1:-80599403 | None:intergenic |
| AGTTGCTTTAGTTGATGTTT+TGG | 0.316900 | 1.1:-80600720 | None:intergenic |
| TCATAATTCTTCTTGATATA+GGG | 0.317116 | 1.1:-80599402 | None:intergenic |
| ATGTTTGCAGTCAGAAATTC+AGG | 0.318176 | 1.1:+80600163 | MS.gene93112:CDS |
| TATGGATAAAGTTGAAGAAT+TGG | 0.322871 | 1.1:+80601000 | MS.gene93112:CDS |
| AGAGAATGGAGTATCCTTCT+TGG | 0.331437 | 1.1:-80598823 | None:intergenic |
| CTACGACAGTGTAACTAAAA+TGG | 0.337816 | 1.1:-80600130 | None:intergenic |
| TAAGCCTTCAAGTTTGGATA+TGG | 0.348181 | 1.1:-80599607 | None:intergenic |
| GATAAAGTGAAAAGATTTCC+AGG | 0.365738 | 1.1:+80598760 | MS.gene93112:CDS |
| CTAAGAAATGCTCAAGTCAT+TGG | 0.367385 | 1.1:+80598716 | MS.gene93112:CDS |
| ATCGCTCGAAATATTTGATC+AGG | 0.377745 | 1.1:-80599172 | None:intergenic |
| ATGGATAAAGTTGAAGAATT+GGG | 0.381672 | 1.1:+80601001 | MS.gene93112:CDS |
| TTTGTATTTCCAAATTGGTC+AGG | 0.383204 | 1.1:+80599564 | MS.gene93112:CDS |
| TGGCAGCATCTTGAGTATCT+TGG | 0.404533 | 1.1:-80600062 | None:intergenic |
| AGGAGGGAAATTTGGAAAGT+TGG | 0.407214 | 1.1:+80598790 | MS.gene93112:CDS |
| CACTTCCATGCTAGTGGAGA+TGG | 0.408461 | 1.1:+80600958 | MS.gene93112:CDS |
| ATCAAGAAGAATTATGACTA+TGG | 0.415116 | 1.1:+80599408 | MS.gene93112:CDS |
| AGTGAAAAGATTTCCAGGTT+TGG | 0.418187 | 1.1:+80598765 | MS.gene93112:CDS |
| ACAGGCATTGCAAGCAAGTT+GGG | 0.420671 | 1.1:+80600037 | MS.gene93112:intron |
| GAATTATGACTATGGTGTTA+TGG | 0.427501 | 1.1:+80599416 | MS.gene93112:CDS |
| ATTTCCCTCCTCACCAAACC+TGG | 0.429641 | 1.1:-80598778 | None:intergenic |
| ATTGCTGCCATGGGATTCTC+TGG | 0.433448 | 1.1:-80600082 | None:intergenic |
| AACTTCGTTAGCAGGATTGT+TGG | 0.434227 | 1.1:+80599120 | MS.gene93112:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | 1.1:+80598936 | MS.gene93112:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.441242 | 1.1:+80598930 | MS.gene93112:CDS |
| GGATTGGGAACTTCGTTAGC+AGG | 0.446695 | 1.1:+80599112 | MS.gene93112:CDS |
| TAATGGAGCCATTGTTCAAA+GGG | 0.447359 | 1.1:+80598887 | MS.gene93112:CDS |
| CAAAGGACTAAACAGAGGAT+TGG | 0.451197 | 1.1:+80599096 | MS.gene93112:CDS |
| GGCTTAGCCAACTCTGTAGA+AGG | 0.451778 | 1.1:+80599624 | MS.gene93112:CDS |
| GCCTCGTAGCACTTGTAAAT+GGG | 0.459315 | 1.1:-80599861 | None:intergenic |
| TCCACCATATCCAAACTTGA+AGG | 0.459404 | 1.1:+80599603 | MS.gene93112:CDS |
| GCCTTCAAGTTTGGATATGG+TGG | 0.460456 | 1.1:-80599604 | None:intergenic |
| ATCAAAAGTTCTAAGGGTAA+TGG | 0.464081 | 1.1:+80600547 | MS.gene93112:CDS |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | 1.1:+80600982 | MS.gene93112:CDS |
| TCGATTTACTTCCAATTACT+GGG | 0.468998 | 1.1:-80600814 | None:intergenic |
| CAAGACCAACTTTCAGAGAA+TGG | 0.469576 | 1.1:-80598837 | None:intergenic |
| TGGATATGGTGGATTTATGA+AGG | 0.471579 | 1.1:-80599593 | None:intergenic |
| GGGTAATGGCCAACAGCATA+AGG | 0.474387 | 1.1:+80600561 | MS.gene93112:CDS |
| AAAGGACTAAACAGAGGATT+GGG | 0.474990 | 1.1:+80599097 | MS.gene93112:CDS |
| TGCTTTCACTTCCATGCTAG+TGG | 0.483281 | 1.1:+80600952 | MS.gene93112:CDS |
| AACAGGCATTGCAAGCAAGT+TGG | 0.483716 | 1.1:+80600036 | MS.gene93112:intron |
| CACATTACCTTCTACAGAGT+TGG | 0.494928 | 1.1:-80599631 | None:intergenic |
| AATTATTCTGCTCCATAAGA+AGG | 0.495731 | 1.1:-80601124 | None:intergenic |
| CAACTGCACATAATGACAAC+AGG | 0.496230 | 1.1:+80600738 | MS.gene93112:CDS |
| GATTTCCAGGTTTGGTGAGG+AGG | 0.505112 | 1.1:+80598773 | MS.gene93112:CDS |
| ATACTCCATTCTCTGAAAGT+TGG | 0.519791 | 1.1:+80598832 | MS.gene93112:CDS |
| GATCCTATCCCTTTGAACAA+TGG | 0.522592 | 1.1:-80598895 | None:intergenic |
| TTGTATTTCCAAATTGGTCA+GGG | 0.524590 | 1.1:+80599565 | MS.gene93112:CDS |
| AGAAGGACAACGACAGAAGA+AGG | 0.527566 | 1.1:+80600862 | MS.gene93112:CDS |
| ATTTCCAGGTTTGGTGAGGA+GGG | 0.533036 | 1.1:+80598774 | MS.gene93112:CDS |
| AGAAGTATCAAAAGTTCTAA+GGG | 0.545176 | 1.1:+80600541 | MS.gene93112:CDS |
| TACACTGTCGTAGCACTACA+TGG | 0.546505 | 1.1:+80600140 | MS.gene93112:CDS |
| GATTGTTTGAGAGTGTTTGA+AGG | 0.549129 | 1.1:-80600601 | None:intergenic |
| TATAGATCACGGATTGACCT+TGG | 0.551863 | 1.1:-80600491 | None:intergenic |
| ATGGAAGTGAAAGCAGCAAA+GGG | 0.553411 | 1.1:-80600944 | None:intergenic |
| CTAATGGAGCCATTGTTCAA+AGG | 0.553954 | 1.1:+80598886 | MS.gene93112:CDS |
| GCGATTTCAATGCATTGTCA+AGG | 0.563036 | 1.1:-80600643 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.567128 | 1.1:+80601034 | MS.gene93112:CDS |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.568913 | 1.1:-80600922 | None:intergenic |
| AAGAATCTTTGTATAGATCA+CGG | 0.570177 | 1.1:-80600502 | None:intergenic |
| CTTGAGCCTAGTAAAAGTTG+TGG | 0.570351 | 1.1:-80600668 | None:intergenic |
| TGCCACCATCTCCACTAGCA+TGG | 0.571399 | 1.1:-80600963 | None:intergenic |
| CATGGAAGTGAAAGCAGCAA+AGG | 0.571864 | 1.1:-80600945 | None:intergenic |
| TGGCAGCAATATGCAAAAGT+AGG | 0.572216 | 1.1:+80600095 | MS.gene93112:CDS |
| GATAGGATCAAATGCTATGT+GGG | 0.574841 | 1.1:+80598909 | MS.gene93112:CDS |
| TCCCGAGAACAAATAAAAGA+AGG | 0.576657 | 1.1:+80600845 | MS.gene93112:CDS |
| TAAAGCTAAGGATGAAACAC+TGG | 0.580961 | 1.1:+80599896 | MS.gene93112:CDS |
| GAGCCATTGTTCAAAGGGAT+AGG | 0.581364 | 1.1:+80598892 | MS.gene93112:CDS |
| TCTACTATATGCATCGGCGT+TGG | 0.581570 | 1.1:+80599519 | MS.gene93112:CDS |
| GGATAGGATCAAATGCTATG+TGG | 0.592083 | 1.1:+80598908 | MS.gene93112:CDS |
| ATTGTTTGAGAGTGTTTGAA+GGG | 0.593546 | 1.1:-80600600 | None:intergenic |
| TAATGATGCAGCTACTGTTG+TGG | 0.595562 | 1.1:+80599785 | MS.gene93112:intron |
| AAAGATTTCCAGGTTTGGTG+AGG | 0.606745 | 1.1:+80598770 | MS.gene93112:CDS |
| TGTTGATAATGTCTTGAAGA+TGG | 0.607522 | 1.1:+80599482 | MS.gene93112:CDS |
| GTGGTCATGGAGTTCACTGT+AGG | 0.611601 | 1.1:+80598949 | MS.gene93112:CDS |
| TTCCATGCTAGTGGAGATGG+TGG | 0.616449 | 1.1:+80600961 | MS.gene93112:CDS |
| CGATTTACTTCCAATTACTG+GGG | 0.623538 | 1.1:-80600813 | None:intergenic |
| TCGCTCGAAATATTTGATCA+GGG | 0.624217 | 1.1:-80599171 | None:intergenic |
| TTGGCAAAGATGATCCAAGA+AGG | 0.626674 | 1.1:+80598809 | MS.gene93112:CDS |
| CGTATCTCTACTATATGCAT+CGG | 0.629374 | 1.1:+80599513 | MS.gene93112:CDS |
| AAATGAAGATGATTCATCAG+AGG | 0.647988 | 1.1:+80599836 | MS.gene93112:CDS |
| TGTATTTCCAAATTGGTCAG+GGG | 0.650407 | 1.1:+80599566 | MS.gene93112:CDS |
| GCAGGAGGGACTTTATCCAA+AGG | 0.661845 | 1.1:+80599079 | MS.gene93112:intron |
| TTATCCAAAGGACTAAACAG+AGG | 0.684276 | 1.1:+80599091 | MS.gene93112:CDS |
| CGACAGTGTAACTAAAATGG+CGG | 0.692887 | 1.1:-80600127 | None:intergenic |
| CATTGTTGTTGAAGACACCA+AGG | 0.696785 | 1.1:+80600474 | MS.gene93112:intron |
| GATGCTGCCAGAGAATCCCA+TGG | 0.698745 | 1.1:+80600075 | MS.gene93112:CDS |
| TATGTGGGCTGTCATGACTG+TGG | 0.700236 | 1.1:+80598924 | MS.gene93112:CDS |
| TCTTCAAGACATTATCAACA+CGG | 0.726201 | 1.1:-80599479 | None:intergenic |
| TCCCATTTACAAGTGCTACG+AGG | 0.727217 | 1.1:+80599860 | MS.gene93112:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTATTTTAAAAAATAGA+AGG | - | chr1.1:80599969-80599988 | None:intergenic | 10.0% |
| !!! | TACTATTTTAAAAAATAGAA+GGG | - | chr1.1:80599968-80599987 | None:intergenic | 10.0% |
| !! | AATGGTTAAGAAAAATATTT+AGG | - | chr1.1:80599333-80599352 | None:intergenic | 15.0% |
| !!! | AATAGTCTACATTATTTTAT+TGG | + | chr1.1:80600353-80600372 | MS.gene93112:intron | 15.0% |
| !!! | AGAGTTATATTTTATACTAA+AGG | - | chr1.1:80600406-80600425 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTGATTTT+CGG | - | chr1.1:80601097-80601116 | None:intergenic | 15.0% |
| !! | CGATACAATTATCAAATTAA+AGG | - | chr1.1:80599454-80599473 | None:intergenic | 20.0% |
| !! | TACTTTACTTGACAAAAAAA+GGG | - | chr1.1:80599933-80599952 | None:intergenic | 20.0% |
| !! | TCATAATTCTTCTTGATATA+GGG | - | chr1.1:80599405-80599424 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTACTAAGTTG+TGG | - | chr1.1:80600896-80600915 | None:intergenic | 20.0% |
| ! | AAGAATCTTTGTATAGATCA+CGG | - | chr1.1:80600505-80600524 | None:intergenic | 25.0% |
| ! | AATAACATGACAGATAATCT+AGG | - | chr1.1:80600223-80600242 | None:intergenic | 25.0% |
| ! | ACTTTACTTGACAAAAAAAG+GGG | - | chr1.1:80599932-80599951 | None:intergenic | 25.0% |
| ! | AGCAATATTCTTTAATGAAG+TGG | - | chr1.1:80599665-80599684 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATGACTA+TGG | + | chr1.1:80599408-80599427 | MS.gene93112:CDS | 25.0% |
| ! | ATGGATAAAGTTGAAGAATT+GGG | + | chr1.1:80601001-80601020 | MS.gene93112:CDS | 25.0% |
| ! | ATTGATTAAGATCTATATGC+AGG | + | chr1.1:80600280-80600299 | MS.gene93112:intron | 25.0% |
| ! | GTACTTTACTTGACAAAAAA+AGG | - | chr1.1:80599934-80599953 | None:intergenic | 25.0% |
| ! | GTCATAATTCTTCTTGATAT+AGG | - | chr1.1:80599406-80599425 | None:intergenic | 25.0% |
| ! | GTCTATTTGTATTTCCAAAT+TGG | + | chr1.1:80599559-80599578 | MS.gene93112:CDS | 25.0% |
| ! | TATGGATAAAGTTGAAGAAT+TGG | + | chr1.1:80601000-80601019 | MS.gene93112:CDS | 25.0% |
| ! | TGTTTATATCACAATCTCAT+AGG | + | chr1.1:80599035-80599054 | MS.gene93112:intron | 25.0% |
| ! | TTAAATAGTACGTACGTTAA+AGG | - | chr1.1:80600452-80600471 | None:intergenic | 25.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | + | chr1.1:80598870-80598889 | MS.gene93112:CDS | 25.0% |
| !! | TTTAAGAGAAGCTTAATTTG+TGG | + | chr1.1:80599298-80599317 | MS.gene93112:intron | 25.0% |
| !!! | AAGAAGTATCAAAAGTTCTA+AGG | + | chr1.1:80600540-80600559 | MS.gene93112:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTTCTAA+GGG | + | chr1.1:80600541-80600560 | MS.gene93112:CDS | 25.0% |
| !!! | TGTTTTAGATTCTAAAGCTA+AGG | + | chr1.1:80599884-80599903 | MS.gene93112:CDS | 25.0% |
| AAATGAAGATGATTCATCAG+AGG | + | chr1.1:80599836-80599855 | MS.gene93112:CDS | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | + | chr1.1:80598760-80598779 | MS.gene93112:CDS | 30.0% | |
| GCTAGCATCTTCATAATTAT+TGG | + | chr1.1:80600375-80600394 | MS.gene93112:intron | 30.0% | |
| GGTAAGCATTTATTACATCA+TGG | + | chr1.1:80599223-80599242 | MS.gene93112:intron | 30.0% | |
| GTCTCAATCTATATAAGTGA+TGG | + | chr1.1:80599756-80599775 | MS.gene93112:intron | 30.0% | |
| TACTAAATCAGCTATCGATA+AGG | + | chr1.1:80600186-80600205 | MS.gene93112:intron | 30.0% | |
| TCACAATCTCATAGGTATTA+AGG | + | chr1.1:80599043-80599062 | MS.gene93112:intron | 30.0% | |
| TCGATTTACTTCCAATTACT+GGG | - | chr1.1:80600817-80600836 | None:intergenic | 30.0% | |
| TCTTCAAGACATTATCAACA+CGG | - | chr1.1:80599482-80599501 | None:intergenic | 30.0% | |
| TGAGCATTTCTTAGTATTGT+TGG | - | chr1.1:80598710-80598729 | None:intergenic | 30.0% | |
| TTCGATTTACTTCCAATTAC+TGG | - | chr1.1:80600818-80600837 | None:intergenic | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | + | chr1.1:80599565-80599584 | MS.gene93112:CDS | 30.0% | |
| TTTGTATTTCCAAATTGGTC+AGG | + | chr1.1:80599564-80599583 | MS.gene93112:CDS | 30.0% | |
| TTTGTCAAGTAAAGTACACT+AGG | + | chr1.1:80599937-80599956 | MS.gene93112:intron | 30.0% | |
| ! | ATATTTCGAGCGATTTTCAT+TGG | + | chr1.1:80599181-80599200 | MS.gene93112:CDS | 30.0% |
| ! | CTTACAGTGTTGAATTAAAC+AGG | + | chr1.1:80600019-80600038 | MS.gene93112:intron | 30.0% |
| ! | GAATTATGACTATGGTGTTA+TGG | + | chr1.1:80599416-80599435 | MS.gene93112:CDS | 30.0% |
| ! | GTCATGTTATTGATAGTACA+TGG | + | chr1.1:80600232-80600251 | MS.gene93112:intron | 30.0% |
| !! | AGTTGCTTTAGTTGATGTTT+TGG | - | chr1.1:80600723-80600742 | None:intergenic | 30.0% |
| !! | ATCAAAAGTTCTAAGGGTAA+TGG | + | chr1.1:80600547-80600566 | MS.gene93112:CDS | 30.0% |
| !! | ATTGTTTGAGAGTGTTTGAA+GGG | - | chr1.1:80600603-80600622 | None:intergenic | 30.0% |
| !! | GTCCTTCTTTTATTTGTTCT+CGG | - | chr1.1:80600850-80600869 | None:intergenic | 30.0% |
| !! | GTTGCTTTAGTTGATGTTTT+GGG | - | chr1.1:80600722-80600741 | None:intergenic | 30.0% |
| !! | TCCTTCTTTTATTTGTTCTC+GGG | - | chr1.1:80600849-80600868 | None:intergenic | 30.0% |
| !! | TGTTGATAATGTCTTGAAGA+TGG | + | chr1.1:80599482-80599501 | MS.gene93112:CDS | 30.0% |
| !! | TTGCTTTAGTTGATGTTTTG+GGG | - | chr1.1:80600721-80600740 | None:intergenic | 30.0% |
| AAAGGACTAAACAGAGGATT+GGG | + | chr1.1:80599097-80599116 | MS.gene93112:CDS | 35.0% | |
| AGTGAAAAGATTTCCAGGTT+TGG | + | chr1.1:80598765-80598784 | MS.gene93112:CDS | 35.0% | |
| ATCGCTCGAAATATTTGATC+AGG | - | chr1.1:80599175-80599194 | None:intergenic | 35.0% | |
| ATGTTTGCAGTCAGAAATTC+AGG | + | chr1.1:80600163-80600182 | MS.gene93112:CDS | 35.0% | |
| CAGGCTTATAATGATTGTCA+GGG | + | chr1.1:80600299-80600318 | MS.gene93112:intron | 35.0% | |
| CGATTTACTTCCAATTACTG+GGG | - | chr1.1:80600816-80600835 | None:intergenic | 35.0% | |
| CGTATCTCTACTATATGCAT+CGG | + | chr1.1:80599513-80599532 | MS.gene93112:CDS | 35.0% | |
| CTAAGAAATGCTCAAGTCAT+TGG | + | chr1.1:80598716-80598735 | MS.gene93112:CDS | 35.0% | |
| CTACGACAGTGTAACTAAAA+TGG | - | chr1.1:80600133-80600152 | None:intergenic | 35.0% | |
| CTTACCTAAAAGAAAAACCG+CGG | - | chr1.1:80599209-80599228 | None:intergenic | 35.0% | |
| GATAGGATCAAATGCTATGT+GGG | + | chr1.1:80598909-80598928 | MS.gene93112:CDS | 35.0% | |
| GCAAACAAACAGTGAAACAA+TGG | - | chr1.1:80599351-80599370 | None:intergenic | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | + | chr1.1:80600982-80601001 | MS.gene93112:CDS | 35.0% | |
| TAAAGCTAAGGATGAAACAC+TGG | + | chr1.1:80599896-80599915 | MS.gene93112:CDS | 35.0% | |
| TAAGGATCAGTTATGATTGC+AGG | + | chr1.1:80599061-80599080 | MS.gene93112:intron | 35.0% | |
| TAATGGAGCCATTGTTCAAA+GGG | + | chr1.1:80598887-80598906 | MS.gene93112:CDS | 35.0% | |
| TCCCGAGAACAAATAAAAGA+AGG | + | chr1.1:80600845-80600864 | MS.gene93112:CDS | 35.0% | |
| TCGCTCGAAATATTTGATCA+GGG | - | chr1.1:80599174-80599193 | None:intergenic | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | + | chr1.1:80599566-80599585 | MS.gene93112:CDS | 35.0% | |
| TTATCCAAAGGACTAAACAG+AGG | + | chr1.1:80599091-80599110 | MS.gene93112:CDS | 35.0% | |
| TTGTTTCACTGTTTGTTTGC+AGG | + | chr1.1:80599351-80599370 | MS.gene93112:intron | 35.0% | |
| ! | ATACTCCATTCTCTGAAAGT+TGG | + | chr1.1:80598832-80598851 | MS.gene93112:CDS | 35.0% |
| ! | GATAATGACTTGCCTTCTTA+TGG | + | chr1.1:80601112-80601131 | MS.gene93112:CDS | 35.0% |
| ! | TAAGCCTTCAAGTTTGGATA+TGG | - | chr1.1:80599610-80599629 | None:intergenic | 35.0% |
| ! | TTGGTGTCTTCAACAACAAT+GGG | - | chr1.1:80600475-80600494 | None:intergenic | 35.0% |
| !! | GATTGTTTGAGAGTGTTTGA+AGG | - | chr1.1:80600604-80600623 | None:intergenic | 35.0% |
| !! | TGCTTTAGTTGATGTTTTGG+GGG | - | chr1.1:80600720-80600739 | None:intergenic | 35.0% |
| !! | TGGATATGGTGGATTTATGA+AGG | - | chr1.1:80599596-80599615 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | - | chr1.1:80600573-80600592 | None:intergenic | 35.0% |
| AACTTCGTTAGCAGGATTGT+TGG | + | chr1.1:80599120-80599139 | MS.gene93112:CDS | 40.0% | |
| ACTTGACAAAAAAAGGGGCA+TGG | - | chr1.1:80599927-80599946 | None:intergenic | 40.0% | |
| AGGAGGGAAATTTGGAAAGT+TGG | + | chr1.1:80598790-80598809 | MS.gene93112:CDS | 40.0% | |
| ATGGAAGTGAAAGCAGCAAA+GGG | - | chr1.1:80600947-80600966 | None:intergenic | 40.0% | |
| CAAAGGACTAAACAGAGGAT+TGG | + | chr1.1:80599096-80599115 | MS.gene93112:CDS | 40.0% | |
| CAACTGCACATAATGACAAC+AGG | + | chr1.1:80600738-80600757 | MS.gene93112:CDS | 40.0% | |
| CAAGACCAACTTTCAGAGAA+TGG | - | chr1.1:80598840-80598859 | None:intergenic | 40.0% | |
| CAATCCTCTGTTTAGTCCTT+TGG | - | chr1.1:80599098-80599117 | None:intergenic | 40.0% | |
| CACATTACCTTCTACAGAGT+TGG | - | chr1.1:80599634-80599653 | None:intergenic | 40.0% | |
| CGACAGTGTAACTAAAATGG+CGG | - | chr1.1:80600130-80600149 | None:intergenic | 40.0% | |
| CTAATGGAGCCATTGTTCAA+AGG | + | chr1.1:80598886-80598905 | MS.gene93112:CDS | 40.0% | |
| CTTGAGCCTAGTAAAAGTTG+TGG | - | chr1.1:80600671-80600690 | None:intergenic | 40.0% | |
| GATCAGTTATGATTGCAGGA+GGG | + | chr1.1:80599065-80599084 | MS.gene93112:intron | 40.0% | |
| GATCCTATCCCTTTGAACAA+TGG | - | chr1.1:80598898-80598917 | None:intergenic | 40.0% | |
| GCAGGCTTATAATGATTGTC+AGG | + | chr1.1:80600298-80600317 | MS.gene93112:intron | 40.0% | |
| GCGATTTCAATGCATTGTCA+AGG | - | chr1.1:80600646-80600665 | None:intergenic | 40.0% | |
| GGATAGGATCAAATGCTATG+TGG | + | chr1.1:80598908-80598927 | MS.gene93112:CDS | 40.0% | |
| TAATGATGCAGCTACTGTTG+TGG | + | chr1.1:80599785-80599804 | MS.gene93112:intron | 40.0% | |
| TCCACCATATCCAAACTTGA+AGG | + | chr1.1:80599603-80599622 | MS.gene93112:CDS | 40.0% | |
| TCTTTAATGAAGTGGTGACC+TGG | - | chr1.1:80599657-80599676 | None:intergenic | 40.0% | |
| TGGCAGCAATATGCAAAAGT+AGG | + | chr1.1:80600095-80600114 | MS.gene93112:CDS | 40.0% | |
| TTGGCAAAGATGATCCAAGA+AGG | + | chr1.1:80598809-80598828 | MS.gene93112:CDS | 40.0% | |
| ! | AACGACAGAAGAAGGTTTTG+AGG | + | chr1.1:80600870-80600889 | MS.gene93112:CDS | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | - | chr1.1:80600095-80600114 | None:intergenic | 40.0% |
| ! | AGAGAATGGAGTATCCTTCT+TGG | - | chr1.1:80598826-80598845 | None:intergenic | 40.0% |
| ! | CACAACTTTTACTAGGCTCA+AGG | + | chr1.1:80600669-80600688 | MS.gene93112:CDS | 40.0% |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | + | chr1.1:80601034-80601053 | MS.gene93112:CDS | 40.0% |
| ! | CATTGTTGTTGAAGACACCA+AGG | + | chr1.1:80600474-80600493 | MS.gene93112:intron | 40.0% |
| ! | CTTTTGCATATTGCTGCCAT+GGG | - | chr1.1:80600094-80600113 | None:intergenic | 40.0% |
| ! | GATTGTTGTTCCCCAGTAAT+TGG | + | chr1.1:80600803-80600822 | MS.gene93112:CDS | 40.0% |
| ! | TATAGATCACGGATTGACCT+TGG | - | chr1.1:80600494-80600513 | None:intergenic | 40.0% |
| ! | TCGCAACCACAACTTTTACT+AGG | + | chr1.1:80600662-80600681 | MS.gene93112:CDS | 40.0% |
| !! | AAAGATTTCCAGGTTTGGTG+AGG | + | chr1.1:80598770-80598789 | MS.gene93112:CDS | 40.0% |
| !! | AGAGAAGCTTAATTTGTGGC+TGG | + | chr1.1:80599302-80599321 | MS.gene93112:intron | 40.0% |
| !! | CTTGGTGTCTTCAACAACAA+TGG | - | chr1.1:80600476-80600495 | None:intergenic | 40.0% |
| !!! | AGTTGATGTTTTGGGGGTTA+TGG | - | chr1.1:80600714-80600733 | None:intergenic | 40.0% |
| !!! | GTTGATGTTTTGGGGGTTAT+GGG | - | chr1.1:80600713-80600732 | None:intergenic | 40.0% |
| !!! | TTGATGTTTTGGGGGTTATG+GGG | - | chr1.1:80600712-80600731 | None:intergenic | 40.0% |
| AGAAGGACAACGACAGAAGA+AGG | + | chr1.1:80600862-80600881 | MS.gene93112:CDS | 45.0% | |
| AGCCTCGTAGCACTTGTAAA+TGG | - | chr1.1:80599865-80599884 | None:intergenic | 45.0% | |
| CATGGAAGTGAAAGCAGCAA+AGG | - | chr1.1:80600948-80600967 | None:intergenic | 45.0% | |
| GAGCCATTGTTCAAAGGGAT+AGG | + | chr1.1:80598892-80598911 | MS.gene93112:CDS | 45.0% | |
| GCCTCGTAGCACTTGTAAAT+GGG | - | chr1.1:80599864-80599883 | None:intergenic | 45.0% | |
| GGAGTTCACTGTAGGTAAAC+AGG | + | chr1.1:80598957-80598976 | MS.gene93112:intron | 45.0% | |
| GGATCAGTTATGATTGCAGG+AGG | + | chr1.1:80599064-80599083 | MS.gene93112:intron | 45.0% | |
| TACACTGTCGTAGCACTACA+TGG | + | chr1.1:80600140-80600159 | MS.gene93112:CDS | 45.0% | |
| TCCCATTTACAAGTGCTACG+AGG | + | chr1.1:80599860-80599879 | MS.gene93112:CDS | 45.0% | |
| TCTGTAGAAGGTAATGTGCC+AGG | + | chr1.1:80599636-80599655 | MS.gene93112:intron | 45.0% | |
| TGCTTTCACTTCCATGCTAG+TGG | + | chr1.1:80600952-80600971 | MS.gene93112:CDS | 45.0% | |
| TGGCAGCATCTTGAGTATCT+TGG | - | chr1.1:80600065-80600084 | None:intergenic | 45.0% | |
| ! | AACAGGCATTGCAAGCAAGT+TGG | + | chr1.1:80600036-80600055 | MS.gene93112:intron | 45.0% |
| ! | ACAGGCATTGCAAGCAAGTT+GGG | + | chr1.1:80600037-80600056 | MS.gene93112:intron | 45.0% |
| ! | GCCTTCAAGTTTGGATATGG+TGG | - | chr1.1:80599607-80599626 | None:intergenic | 45.0% |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | chr1.1:80600925-80600944 | None:intergenic | 45.0% |
| ! | GTTGGCTAAGCCTTCAAGTT+TGG | - | chr1.1:80599616-80599635 | None:intergenic | 45.0% |
| ! | GTTTGGTGAGGAGGGAAATT+TGG | + | chr1.1:80598782-80598801 | MS.gene93112:CDS | 45.0% |
| ! | TCTACTATATGCATCGGCGT+TGG | + | chr1.1:80599519-80599538 | MS.gene93112:CDS | 45.0% |
| !! | ATTTCCAGGTTTGGTGAGGA+GGG | + | chr1.1:80598774-80598793 | MS.gene93112:CDS | 45.0% |
| !!! | TGATGTTTTGGGGGTTATGG+GGG | - | chr1.1:80600711-80600730 | None:intergenic | 45.0% |
| AGGTCTTCCCCTGACCAATT+TGG | - | chr1.1:80599576-80599595 | None:intergenic | 50.0% | |
| ATTGCTGCCATGGGATTCTC+TGG | - | chr1.1:80600085-80600104 | None:intergenic | 50.0% | |
| ATTTCCCTCCTCACCAAACC+TGG | - | chr1.1:80598781-80598800 | None:intergenic | 50.0% | |
| CACTTCCATGCTAGTGGAGA+TGG | + | chr1.1:80600958-80600977 | MS.gene93112:CDS | 50.0% | |
| CATGACTGTGGTTGTGGTCA+TGG | + | chr1.1:80598936-80598955 | MS.gene93112:CDS | 50.0% | |
| GCAGGAGGGACTTTATCCAA+AGG | + | chr1.1:80599079-80599098 | MS.gene93112:intron | 50.0% | |
| GGATTGGGAACTTCGTTAGC+AGG | + | chr1.1:80599112-80599131 | MS.gene93112:CDS | 50.0% | |
| GGCTTAGCCAACTCTGTAGA+AGG | + | chr1.1:80599624-80599643 | MS.gene93112:CDS | 50.0% | |
| GTGGTCATGGAGTTCACTGT+AGG | + | chr1.1:80598949-80598968 | MS.gene93112:CDS | 50.0% | |
| TTCCATGCTAGTGGAGATGG+TGG | + | chr1.1:80600961-80600980 | MS.gene93112:CDS | 50.0% | |
| ! | AGCGATTTTCATTGGAGCCG+CGG | + | chr1.1:80599189-80599208 | MS.gene93112:CDS | 50.0% |
| ! | GGAGCCGCGGTTTTTCTTTT+AGG | + | chr1.1:80599202-80599221 | MS.gene93112:CDS | 50.0% |
| ! | GGGTAATGGCCAACAGCATA+AGG | + | chr1.1:80600561-80600580 | MS.gene93112:CDS | 50.0% |
| ! | TATGTGGGCTGTCATGACTG+TGG | + | chr1.1:80598924-80598943 | MS.gene93112:CDS | 50.0% |
| !! | GATTTCCAGGTTTGGTGAGG+AGG | + | chr1.1:80598773-80598792 | MS.gene93112:CDS | 50.0% |
| GATGCTGCCAGAGAATCCCA+TGG | + | chr1.1:80600075-80600094 | MS.gene93112:CDS | 55.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | + | chr1.1:80598930-80598949 | MS.gene93112:CDS | 55.0% | |
| TGCCACCATCTCCACTAGCA+TGG | - | chr1.1:80600966-80600985 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80598697 | 80601144 | 80598697 | ID=MS.gene93112 |
| chr1.1 | mRNA | 80598697 | 80601144 | 80598697 | ID=MS.gene93112.t1;Parent=MS.gene93112 |
| chr1.1 | exon | 80598697 | 80598970 | 80598697 | ID=MS.gene93112.t1.exon1;Parent=MS.gene93112.t1 |
| chr1.1 | CDS | 80598697 | 80598970 | 80598697 | ID=cds.MS.gene93112.t1;Parent=MS.gene93112.t1 |
| chr1.1 | exon | 80599083 | 80599223 | 80599083 | ID=MS.gene93112.t1.exon2;Parent=MS.gene93112.t1 |
| chr1.1 | CDS | 80599083 | 80599223 | 80599083 | ID=cds.MS.gene93112.t1;Parent=MS.gene93112.t1 |
| chr1.1 | exon | 80599373 | 80599645 | 80599373 | ID=MS.gene93112.t1.exon3;Parent=MS.gene93112.t1 |
| chr1.1 | CDS | 80599373 | 80599645 | 80599373 | ID=cds.MS.gene93112.t1;Parent=MS.gene93112.t1 |
| chr1.1 | exon | 80599796 | 80599917 | 80599796 | ID=MS.gene93112.t1.exon4;Parent=MS.gene93112.t1 |
| chr1.1 | CDS | 80599796 | 80599917 | 80599796 | ID=cds.MS.gene93112.t1;Parent=MS.gene93112.t1 |
| chr1.1 | exon | 80600041 | 80600184 | 80600041 | ID=MS.gene93112.t1.exon5;Parent=MS.gene93112.t1 |
| chr1.1 | CDS | 80600041 | 80600184 | 80600041 | ID=cds.MS.gene93112.t1;Parent=MS.gene93112.t1 |
| chr1.1 | exon | 80600488 | 80601144 | 80600488 | ID=MS.gene93112.t1.exon6;Parent=MS.gene93112.t1 |
| chr1.1 | CDS | 80600488 | 80601144 | 80600488 | ID=cds.MS.gene93112.t1;Parent=MS.gene93112.t1 |
| Gene Sequence |
| Protein sequence |
