AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93584

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93584.t1 MTR_3g026620 89.279 513 19 2 1 479 1 511 0.0 898
MS.gene93584.t1 MTR_3g026400 75.439 513 89 3 1 479 1 510 0.0 786
MS.gene93584.t1 MTR_3g026400 74.510 459 81 2 55 479 23 479 0.0 705
MS.gene93584.t1 MTR_3g026400 73.925 372 62 2 1 338 1 371 0.0 556
MS.gene93584.t1 MTR_2g098790 48.350 515 225 6 3 478 2 514 1.80e-171 493
MS.gene93584.t1 MTR_4g066580 48.538 513 221 6 7 478 5 515 4.59e-170 489
MS.gene93584.t1 MTR_3g026280 49.793 482 193 5 35 476 19 491 1.09e-169 487
MS.gene93584.t1 MTR_6g078450 50.000 480 200 5 37 478 35 512 1.77e-169 488
MS.gene93584.t1 MTR_2g098540 48.509 503 217 6 14 478 9 507 8.41e-169 485
MS.gene93584.t1 MTR_4g066240 47.835 508 222 7 11 478 8 512 4.36e-167 481
MS.gene93584.t1 MTR_4g066240 47.741 509 222 8 11 478 8 513 3.51e-165 476
MS.gene93584.t1 MTR_4g066590 47.233 506 226 6 10 476 4 507 5.88e-165 476
MS.gene93584.t1 MTR_3g028720 47.674 516 223 7 7 478 2 514 2.09e-164 475
MS.gene93584.t1 MTR_4g023000 46.337 505 217 5 11 478 7 494 5.54e-164 473
MS.gene93584.t1 MTR_2g098520 48.367 490 213 5 27 478 23 510 8.79e-164 473
MS.gene93584.t1 MTR_6g078380 49.896 479 199 5 37 476 35 511 6.91e-161 466
MS.gene93584.t1 MTR_6g078330 47.937 509 218 7 8 478 14 513 2.34e-160 464
MS.gene93584.t1 MTR_4g066210 47.817 481 211 5 36 478 41 519 3.18e-160 464
MS.gene93584.t1 MTR_4g066640 48.039 510 221 7 7 478 10 513 7.57e-159 460
MS.gene93584.t1 MTR_2g098540 49.348 460 193 5 57 478 6 463 4.10e-158 456
MS.gene93584.t1 MTR_4g066630 46.479 497 225 6 18 476 20 513 4.40e-156 454
MS.gene93584.t1 MTR_5g071520 46.435 519 228 7 8 478 8 524 4.10e-154 449
MS.gene93584.t1 MTR_0110s0040 45.850 506 230 7 9 478 15 512 4.76e-149 435
MS.gene93584.t1 MTR_4g066330 45.117 512 213 6 8 478 9 493 5.46e-149 434
MS.gene93584.t1 MTR_0110s0030 45.972 509 225 8 9 478 15 512 1.87e-148 434
MS.gene93584.t1 MTR_4g083000 44.628 484 219 6 35 476 25 501 3.84e-144 422
MS.gene93584.t1 MTR_4g066280 44.191 482 203 5 36 478 39 493 1.61e-141 416
MS.gene93584.t1 MTR_4g066340 48.165 436 186 5 81 478 6 439 3.79e-141 412
MS.gene93584.t1 MTR_6g078450 48.235 425 180 5 37 423 35 457 4.09e-140 410
MS.gene93584.t1 MTR_4g066580 48.592 426 178 5 7 391 5 430 2.27e-138 405
MS.gene93584.t1 MTR_3g028720 46.638 461 199 7 7 423 2 459 7.36e-138 405
MS.gene93584.t1 MTR_5g044000 41.491 523 243 7 14 476 1 520 2.46e-137 405
MS.gene93584.t1 MTR_4g066240 48.333 420 176 6 11 390 8 426 1.10e-135 398
MS.gene93584.t1 MTR_3g033810 41.719 477 229 7 39 479 22 485 1.84e-135 400
MS.gene93584.t1 MTR_3g028720 47.877 424 176 6 7 386 2 424 9.77e-134 393
MS.gene93584.t1 MTR_3g033790 41.090 477 231 7 39 479 20 482 1.94e-133 395
MS.gene93584.t1 MTR_4g066630 45.824 443 199 6 18 422 20 459 9.01e-132 389
MS.gene93584.t1 MTR_2g043200 44.885 479 192 9 43 478 70 519 8.70e-131 389
MS.gene93584.t1 MTR_2g022760 41.571 522 244 8 1 478 7 511 3.79e-130 387
MS.gene93584.t1 MTR_4g081530 42.593 486 227 9 35 476 21 498 1.33e-129 385
MS.gene93584.t1 MTR_4g131810 42.526 475 230 6 43 477 33 504 2.39e-129 385
MS.gene93584.t1 MTR_6g078330 47.689 411 175 5 106 478 1 409 7.42e-128 378
MS.gene93584.t1 MTR_4g066630 45.803 417 187 5 18 396 20 435 5.66e-127 377
MS.gene93584.t1 MTR_2g079580 41.273 487 244 7 28 476 21 503 5.96e-127 379
MS.gene93584.t1 MTR_2g079550 41.478 487 243 7 28 476 19 501 6.10e-127 379
MS.gene93584.t1 MTR_4g067040 46.154 403 177 5 10 372 4 406 7.27e-124 367
MS.gene93584.t1 MTR_7g068910 39.608 510 251 9 8 478 4 495 1.36e-123 370
MS.gene93584.t1 MTR_2g022710 40.675 504 253 7 11 476 12 507 6.14e-123 369
MS.gene93584.t1 MTR_4g016920 40.710 479 230 9 37 476 26 489 6.51e-123 369
MS.gene93584.t1 MTR_4g015420 41.379 493 211 9 35 478 62 525 1.75e-121 365
MS.gene93584.t1 MTR_7g068910 38.846 520 251 10 8 478 4 505 3.37e-120 362
MS.gene93584.t1 MTR_4g131800 40.927 518 249 9 2 478 489 990 1.81e-119 374
MS.gene93584.t1 MTR_4g015460 42.147 503 212 12 24 476 26 499 4.28e-119 358
MS.gene93584.t1 MTR_4g083000 44.068 413 183 5 106 476 1 407 4.67e-118 352
MS.gene93584.t1 MTR_3g028720 47.409 386 158 6 7 348 2 386 8.04e-118 352
MS.gene93584.t1 MTR_4g066640 48.312 385 157 6 7 353 10 390 8.82e-117 348
MS.gene93584.t1 MTR_4g067040 46.702 379 162 5 10 348 4 382 8.59e-116 346
MS.gene93584.t1 MTR_6g078330 45.729 398 178 4 117 478 14 409 2.44e-115 346
MS.gene93584.t1 MTR_0108s0030 40.000 485 217 9 29 476 1 448 3.51e-113 342
MS.gene93584.t1 MTR_1g088610 38.831 479 235 9 38 476 27 487 1.21e-112 346
MS.gene93584.t1 MTR_1g088610 34.746 118 68 2 360 476 503 612 5.64e-15 77.8
MS.gene93584.t1 MTR_6g078330 48.864 352 136 4 8 322 14 358 7.47e-112 335
MS.gene93584.t1 MTR_5g068740 37.732 485 235 8 37 476 26 488 7.78e-112 340
MS.gene93584.t1 MTR_7g033860 38.994 477 236 7 40 476 50 511 1.64e-111 339
MS.gene93584.t1 MTR_4g066630 49.107 336 133 4 36 333 37 372 1.72e-111 335
MS.gene93584.t1 MTR_0110s0040 48.837 344 138 4 9 317 15 355 2.91e-110 332
MS.gene93584.t1 MTR_2g022760 42.446 417 187 7 106 478 1 408 3.21e-105 320
MS.gene93584.t1 MTR_2g079580 41.667 396 192 5 28 385 21 415 2.89e-104 317
MS.gene93584.t1 MTR_2g022710 39.246 451 229 6 11 423 12 455 1.11e-100 310
MS.gene93584.t1 MTR_2g022710 39.246 451 229 6 11 423 12 455 1.56e-100 310
MS.gene93584.t1 MTR_2g022710 40.920 413 201 5 11 385 12 419 4.08e-100 307
MS.gene93584.t1 MTR_2g022710 41.320 409 199 5 106 476 1 406 5.12e-100 306
MS.gene93584.t1 MTR_4g016920 38.631 409 200 7 106 476 1 396 1.45e-97 300
MS.gene93584.t1 MTR_7g051510 37.166 487 239 8 35 478 71 533 2.20e-96 301
MS.gene93584.t1 MTR_7g068900 38.702 416 201 8 101 476 17 418 3.78e-96 299
MS.gene93584.t1 MTR_1g088630 36.522 460 210 11 57 476 14 431 1.53e-95 296
MS.gene93584.t1 MTR_2g022710 40.250 400 196 5 11 372 12 406 1.56e-93 290
MS.gene93584.t1 MTR_7g051610 37.006 481 235 10 39 476 76 531 7.28e-93 292
MS.gene93584.t1 MTR_7g051650 35.744 484 247 11 35 476 71 532 8.28e-90 284
MS.gene93584.t1 MTR_7g051650 35.537 484 244 11 35 476 71 528 3.25e-89 282
MS.gene93584.t1 MTR_2g022710 41.860 344 160 4 11 319 12 350 3.09e-85 268
MS.gene93584.t1 MTR_1g088630 41.139 316 123 5 37 316 26 314 1.60e-79 252
MS.gene93584.t1 MTR_7g056747 35.322 419 199 9 100 476 9 397 5.88e-76 244
MS.gene93584.t1 MTR_4g016920 41.549 284 126 4 106 352 1 281 6.39e-73 233
MS.gene93584.t1 MTR_1g088630 43.446 267 112 3 37 267 26 289 2.35e-72 231
MS.gene93584.t1 MTR_0110s0020 43.657 268 113 4 9 241 15 279 9.14e-70 225
MS.gene93584.t1 MTR_8g038650 42.157 102 58 1 227 328 57 157 8.27e-22 92.4
MS.gene93584.t1 MTR_4g122980 24.941 425 214 14 95 479 176 535 7.23e-17 84.0
MS.gene93584.t1 MTR_5g069350 34.839 155 62 5 330 476 64 187 3.10e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93584.t1 AT2G44480 48.852 479 206 4 35 476 32 508 8.89e-169 486
MS.gene93584.t1 AT2G44480 48.852 479 206 4 35 476 63 539 3.04e-168 486
MS.gene93584.t1 AT2G44450 45.912 477 213 5 38 476 31 500 1.32e-154 449
MS.gene93584.t1 AT5G44640 44.311 501 233 6 16 476 7 501 2.83e-154 448
MS.gene93584.t1 AT5G42260 44.622 502 232 6 9 472 4 497 4.16e-152 443
MS.gene93584.t1 AT3G60130 46.875 480 210 7 38 479 30 502 8.74e-151 440
MS.gene93584.t1 AT2G25630 42.545 503 226 7 12 476 6 483 2.03e-143 420
MS.gene93584.t1 AT3G18070 44.864 477 223 7 36 478 28 498 5.63e-143 419
MS.gene93584.t1 AT3G18070 44.989 469 224 6 38 478 30 492 5.76e-143 419
MS.gene93584.t1 AT3G18080 44.699 481 224 5 34 478 35 509 2.00e-141 416
MS.gene93584.t1 AT1G26560 43.711 485 223 7 35 476 29 506 7.76e-140 412
MS.gene93584.t1 AT5G54570 45.135 483 220 7 35 476 27 505 5.43e-139 410
MS.gene93584.t1 AT2G44480 46.814 408 178 4 106 476 1 406 1.77e-133 392
MS.gene93584.t1 AT3G60140 42.474 485 235 9 35 478 23 504 7.56e-131 391
MS.gene93584.t1 AT5G24550 40.980 510 256 9 11 478 5 511 1.28e-130 389
MS.gene93584.t1 AT1G61820 42.946 482 233 7 34 476 26 504 3.01e-130 387
MS.gene93584.t1 AT1G47600 43.333 480 221 9 37 478 44 510 8.91e-129 384
MS.gene93584.t1 AT2G32860 42.348 477 228 9 43 476 99 571 2.01e-128 386
MS.gene93584.t1 AT1G47600 43.542 480 221 10 37 478 44 511 3.56e-128 382
MS.gene93584.t1 AT1G02850 40.461 477 229 8 38 476 26 485 1.27e-127 380
MS.gene93584.t1 AT2G32860 42.348 477 227 10 43 476 99 570 2.19e-127 383
MS.gene93584.t1 AT1G51470 43.333 480 222 10 37 478 44 511 4.54e-127 379
MS.gene93584.t1 AT1G61810 41.212 495 239 8 28 476 19 507 6.63e-126 376
MS.gene93584.t1 AT4G21760 39.766 513 255 8 8 478 23 523 1.22e-125 377
MS.gene93584.t1 AT4G27830 39.726 511 238 11 9 476 1 484 9.67e-125 373
MS.gene93584.t1 AT3G60120 41.201 483 239 10 37 478 13 491 1.15e-124 374
MS.gene93584.t1 AT2G44490 41.201 483 238 9 37 476 13 492 1.86e-124 374
MS.gene93584.t1 AT2G44470 41.649 485 233 11 38 478 29 507 2.47e-124 375
MS.gene93584.t1 AT5G36890 40.632 475 231 8 40 476 18 479 1.62e-123 369
MS.gene93584.t1 AT5G36890 40.632 475 231 8 40 476 18 479 1.86e-123 369
MS.gene93584.t1 AT5G24540 41.373 510 254 9 11 478 5 511 2.61e-123 370
MS.gene93584.t1 AT1G02850 38.800 500 228 9 38 476 26 508 4.66e-123 369
MS.gene93584.t1 AT3G60130 45.215 418 184 7 100 479 40 450 7.82e-123 367
MS.gene93584.t1 AT1G61810 41.286 482 231 8 28 463 19 494 8.40e-122 367
MS.gene93584.t1 AT1G02850 38.723 501 228 10 38 476 26 509 2.92e-121 365
MS.gene93584.t1 AT4G27820 40.657 487 226 9 32 476 17 482 2.24e-118 357
MS.gene93584.t1 AT5G25980 40.462 519 258 13 1 476 12 522 2.30e-118 358
MS.gene93584.t1 AT4G21760 38.596 513 251 9 8 478 23 513 2.12e-117 355
MS.gene93584.t1 AT3G60130 44.498 418 176 8 100 479 40 439 2.33e-116 350
MS.gene93584.t1 AT1G02850 38.574 477 211 9 38 476 26 458 2.44e-115 348
MS.gene93584.t1 AT4G22100 37.945 506 248 9 9 476 5 482 2.71e-115 349
MS.gene93584.t1 AT5G54570 43.823 429 197 6 35 423 27 451 3.68e-115 347
MS.gene93584.t1 AT1G45191 39.873 474 231 8 38 476 29 483 2.35e-114 346
MS.gene93584.t1 AT3G62750 38.477 512 240 11 5 476 23 499 4.00e-114 346
MS.gene93584.t1 AT3G18070 42.247 445 204 9 36 478 28 421 4.04e-114 343
MS.gene93584.t1 AT3G62750 38.614 505 235 11 12 476 4 473 6.62e-114 345
MS.gene93584.t1 AT1G45191 40.084 479 234 10 38 476 29 494 1.18e-113 345
MS.gene93584.t1 AT2G44460 42.083 480 233 11 38 476 29 504 1.35e-113 347
MS.gene93584.t1 AT5G54570 44.417 412 184 7 106 476 1 408 2.71e-113 341
MS.gene93584.t1 AT1G45191 39.579 475 237 9 38 476 29 489 3.16e-113 343
MS.gene93584.t1 AT3G21370 38.809 487 250 10 37 479 32 514 6.32e-113 343
MS.gene93584.t1 AT5G26000 39.423 520 262 12 1 476 1 511 7.13e-113 343
MS.gene93584.t1 AT1G45191 39.300 486 240 9 38 476 29 506 3.31e-112 342
MS.gene93584.t1 AT3G03640 40.369 488 243 11 35 478 31 514 3.68e-111 339
MS.gene93584.t1 AT1G60090 37.422 481 244 7 38 476 24 489 9.19e-111 337
MS.gene93584.t1 AT1G75940 39.836 487 245 10 38 479 37 520 1.57e-110 337
MS.gene93584.t1 AT1G60090 38.333 480 234 9 38 476 24 482 7.11e-110 335
MS.gene93584.t1 AT2G44450 47.561 328 163 3 151 476 29 349 1.49e-109 329
MS.gene93584.t1 AT2G44480 51.757 313 114 3 35 311 63 374 2.48e-109 330
MS.gene93584.t1 AT1G52400 39.752 483 241 10 38 476 39 515 2.67e-109 334
MS.gene93584.t1 AT1G52400 39.752 483 241 10 38 476 39 515 2.67e-109 334
MS.gene93584.t1 AT1G66280 37.938 514 269 11 8 479 8 513 2.69e-106 326
MS.gene93584.t1 AT3G09260 38.557 485 249 10 38 479 35 513 4.27e-106 326
MS.gene93584.t1 AT1G66270 38.200 500 259 12 21 479 21 511 4.07e-104 320
MS.gene93584.t1 AT1G61810 41.895 401 190 5 28 385 19 419 7.10e-104 317
MS.gene93584.t1 AT1G66270 38.048 502 259 12 21 479 21 513 1.02e-103 320
MS.gene93584.t1 AT3G62740 37.067 491 240 10 29 476 14 478 1.86e-103 318
MS.gene93584.t1 AT3G18070 49.359 312 125 4 38 317 30 340 3.55e-103 313
MS.gene93584.t1 AT5G28510 36.450 524 273 13 9 479 6 522 7.67e-103 318
MS.gene93584.t1 AT2G44480 47.855 303 155 2 175 476 2 302 1.84e-102 309
MS.gene93584.t1 AT1G61810 40.678 413 197 7 106 476 1 407 2.60e-102 312
MS.gene93584.t1 AT1G02850 39.216 408 179 7 38 385 26 424 3.97e-101 310
MS.gene93584.t1 AT5G25980 39.224 464 233 11 1 423 12 467 1.09e-100 310
MS.gene93584.t1 AT5G25980 39.224 464 233 11 1 423 12 467 1.09e-100 310
MS.gene93584.t1 AT5G24540 40.220 455 228 8 9 422 3 454 3.38e-100 308
MS.gene93584.t1 AT2G44470 39.720 428 209 10 38 422 29 450 1.78e-99 306
MS.gene93584.t1 AT3G60140 40.100 399 198 7 35 393 23 420 4.90e-99 305
MS.gene93584.t1 AT3G62750 38.043 460 211 10 5 425 23 447 2.29e-98 304
MS.gene93584.t1 AT4G27830 38.889 414 192 9 106 476 1 396 5.55e-97 299
MS.gene93584.t1 AT5G26000 38.065 465 237 10 1 423 1 456 2.10e-94 293
MS.gene93584.t1 AT1G61820 44.985 329 174 4 152 476 40 365 2.18e-94 291
MS.gene93584.t1 AT3G18070 44.904 314 166 3 167 478 1 309 5.42e-93 285
MS.gene93584.t1 AT4G27820 39.467 413 192 8 106 476 1 397 1.21e-91 285
MS.gene93584.t1 AT4G27820 39.467 413 192 8 106 476 1 397 1.21e-91 285
MS.gene93584.t1 AT3G62740 39.098 399 183 8 29 385 14 394 7.68e-91 283
MS.gene93584.t1 AT3G62750 39.623 371 165 6 12 343 4 354 5.53e-89 276
MS.gene93584.t1 AT3G62750 39.623 371 165 6 12 343 4 354 5.53e-89 276
MS.gene93584.t1 AT3G62750 39.628 376 168 6 5 341 23 378 1.38e-88 278
MS.gene93584.t1 AT1G52400 38.318 428 215 9 38 422 39 460 6.06e-88 277
MS.gene93584.t1 AT1G45191 43.396 318 141 3 38 321 29 341 4.37e-87 273
MS.gene93584.t1 AT1G45191 43.396 318 141 3 38 321 29 341 4.93e-87 273
MS.gene93584.t1 AT3G62750 37.470 411 194 9 106 476 1 388 8.14e-87 272
MS.gene93584.t1 AT3G62750 37.470 411 194 9 106 476 1 388 8.14e-87 272
MS.gene93584.t1 AT3G18070 42.330 352 155 7 36 385 28 333 1.20e-85 267
MS.gene93584.t1 AT2G44470 41.212 330 153 6 38 329 29 355 1.13e-84 266
MS.gene93584.t1 AT1G60270 39.645 338 163 3 38 338 24 357 2.44e-83 262
MS.gene93584.t1 AT5G48375 35.682 440 181 8 38 441 38 411 3.33e-81 259
MS.gene93584.t1 AT2G44460 42.486 346 188 8 139 476 16 358 7.77e-77 247
MS.gene93584.t1 AT1G51490 39.011 364 162 10 46 367 28 373 1.06e-74 241
MS.gene93584.t1 AT1G61810 43.617 282 120 3 28 270 19 300 7.53e-73 233
MS.gene93584.t1 AT3G18070 46.154 221 117 1 167 385 1 221 1.12e-64 209
MS.gene93584.t1 AT1G60270 37.778 270 131 2 106 338 1 270 6.37e-61 201
MS.gene93584.t1 AT5G16580 38.305 295 161 5 143 433 22 299 2.46e-60 200

Find 103 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCATATTACCTGATATT+TGG 0.178376 3.4:-19293246 None:intergenic
ATATTTGGCCTTATACAATT+TGG 0.224460 3.4:-19293231 None:intergenic
ATAAAGATTATGAAAGAAAT+TGG 0.229099 3.4:+19292152 MS.gene93584:CDS
CCTGTTTCATACACCATTAA+TGG 0.239205 3.4:+19293083 MS.gene93584:CDS
CCAGTGTACATTACTGAAAA+TGG 0.258317 3.4:+19295338 MS.gene93584:CDS
GTTCATAGTAGTGAGTAATT+AGG 0.275109 3.4:-19293927 None:intergenic
ATGGGAGAGGACCAAGTATA+TGG 0.302102 3.4:+19291753 MS.gene93584:CDS
GCCTCCATGGTATCCATTAA+TGG 0.303144 3.4:-19293096 None:intergenic
TGAAGTAGGTCATGTTGATA+TGG 0.309455 3.4:-19294452 None:intergenic
TGATCCTAATACCATCTTTA+CGG 0.327105 3.4:-19296667 None:intergenic
GGATAGTGACCATACGTAAT+TGG 0.334672 3.4:-19294294 None:intergenic
GCTTCAAGACATTTGGAGAT+AGG 0.339805 3.4:+19293033 MS.gene93584:CDS
ATGTCATAGGCTCGTCAAAA+AGG 0.350191 3.4:+19293889 MS.gene93584:intron
GAAGGAGCTTCAAATATAGA+TGG 0.361666 3.4:+19291734 MS.gene93584:CDS
AGAGAAAATCAGGAGGAAAA+AGG 0.365403 3.4:-19290859 None:intergenic
TAGCCCGTAAAGATGGTATT+AGG 0.367113 3.4:+19296663 MS.gene93584:CDS
TCCAACATATTTAGAGCATC+TGG 0.370979 3.4:-19293132 None:intergenic
CACATGTTGTGATGCAGTTC+CGG 0.372703 3.4:-19290801 None:intergenic
CCAATTCCAAAGAGAAAATC+AGG 0.378563 3.4:-19290869 None:intergenic
TGCTGCAGCCAAATTGTATA+AGG 0.379528 3.4:+19293223 MS.gene93584:CDS
TTCATAGTAGTGAGTAATTA+GGG 0.384414 3.4:-19293926 None:intergenic
CCATTAATGGTGTATGAAAC+AGG 0.390045 3.4:-19293083 None:intergenic
GCAGGCTACACGATACGATT+TGG 0.390192 3.4:+19297354 MS.gene93584:CDS
TAAGGATGATATCATTGATT+GGG 0.390277 3.4:-19294316 None:intergenic
GACCACAGCAGTGGTAATAT+TGG 0.390957 3.4:+19291961 MS.gene93584:CDS
AATTGGTTCTTCTGCTTACC+AGG 0.392026 3.4:+19290886 MS.gene93584:CDS
GATTATGAAAGAAATTGGTT+TGG 0.407666 3.4:+19292157 MS.gene93584:CDS
GGAAGGACCCGTAGCTTTCA+TGG 0.408782 3.4:-19290735 None:intergenic
GTTCATACTTTATTGCTTGA+AGG 0.410047 3.4:-19296718 None:intergenic
TGGAGATAGGGTTAAGCATT+GGG 0.413839 3.4:+19293046 MS.gene93584:CDS
GATCCTAATACCATCTTTAC+GGG 0.424683 3.4:-19296666 None:intergenic
TCTTTACGGGCTACGTTGAC+TGG 0.425906 3.4:-19296653 None:intergenic
ATTGTATAAGGCCAAATATC+AGG 0.426496 3.4:+19293235 MS.gene93584:CDS
CTTCAAGACATTTGGAGATA+GGG 0.430530 3.4:+19293034 MS.gene93584:CDS
TCGGCAACACTATTAGAATA+TGG 0.432481 3.4:-19293949 None:intergenic
CTAAGGATGATATCATTGAT+TGG 0.433871 3.4:-19294317 None:intergenic
ATTCACACCAAGAAAATCAT+AGG 0.436183 3.4:-19294391 None:intergenic
ACTATGCTGCTTCATTCAAT+AGG 0.440030 3.4:+19290834 MS.gene93584:CDS
TATGTTGGAAATTGCTCTAC+TGG 0.447346 3.4:+19293146 MS.gene93584:CDS
ATGAAGAATGGTGTAGCTAT+TGG 0.450804 3.4:+19294623 MS.gene93584:CDS
TTGTGCAGACGGATCTGAAC+TGG 0.460149 3.4:+19295249 MS.gene93584:intron
TCCATAAATACTTACGAATG+AGG 0.464054 3.4:-19294491 None:intergenic
TTGGAGATAGGGTTAAGCAT+TGG 0.464172 3.4:+19293045 MS.gene93584:CDS
ACGATTTGGAATAATTTATG+TGG 0.466735 3.4:+19297368 MS.gene93584:CDS
GTGAAGGTGTCCCATATACT+TGG 0.479301 3.4:-19291764 None:intergenic
GGAATTTGAGATGGCTATCA+TGG 0.493604 3.4:-19296694 None:intergenic
TTGATCACAGCAATGAAGAA+TGG 0.494021 3.4:+19294611 MS.gene93584:intron
GCCAGATGCTCTAAATATGT+TGG 0.497289 3.4:+19293131 MS.gene93584:CDS
AAGTGATGAGCAACAATGTA+GGG 0.499808 3.4:-19293185 None:intergenic
CAAGGGAGCAGTCAATCCTA+TGG 0.499863 3.4:+19292597 MS.gene93584:CDS
CAATCAATGATATCATCCTT+AGG 0.500786 3.4:+19294318 MS.gene93584:CDS
ATTAATGAGGTCCTAGCAAA+TGG 0.506011 3.4:+19292643 MS.gene93584:CDS
GCTGCAAAAGTTCCTTCTCA+AGG 0.507675 3.4:+19297437 MS.gene93584:CDS
ATCTGCAGCCATGAAAGCTA+CGG 0.508809 3.4:+19290727 None:intergenic
TAAGGTTTATACCATTTGCT+AGG 0.510002 3.4:-19292654 None:intergenic
GTCAACGTAGCCCGTAAAGA+TGG 0.512028 3.4:+19296656 MS.gene93584:CDS
GAAGAATTTAAAATTATCAA+AGG 0.521384 3.4:+19294366 MS.gene93584:CDS
TGGTGTAGCTATTGGCTCCT+CGG 0.529880 3.4:+19294631 MS.gene93584:CDS
TCTACTTGCAGCTTTGTGAT+CGG 0.532372 3.4:-19293968 None:intergenic
GATAGCTATGAATGGGATGC+AGG 0.533103 3.4:+19297336 MS.gene93584:CDS
CTTGAAGGAGGAATTTGAGA+TGG 0.533284 3.4:-19296703 None:intergenic
GAACTGGCTATACGTCTATC+CGG 0.535930 3.4:+19295265 MS.gene93584:CDS
TGCATCCCATTCATAGCTAT+CGG 0.537019 3.4:-19297334 None:intergenic
TGCTTGCATATCAGTGAAGT+AGG 0.537710 3.4:-19294466 None:intergenic
TGGGAGAGGACCAAGTATAT+GGG 0.538174 3.4:+19291754 MS.gene93584:CDS
ATTTGAGTTATCCCTTGAGA+AGG 0.539367 3.4:-19297449 None:intergenic
GTCATGTTGATATGGGTTGG+TGG 0.541020 3.4:-19294444 None:intergenic
CAGGTGGAGAAGTGCCTCCA+TGG 0.544070 3.4:-19293109 None:intergenic
AAAGTGATGAGCAACAATGT+AGG 0.552733 3.4:-19293186 None:intergenic
CATACTTTATTGCTTGAAGG+AGG 0.556125 3.4:-19296715 None:intergenic
GAAGTAGGTCATGTTGATAT+GGG 0.560351 3.4:-19294451 None:intergenic
GATATCGTATACAGAGGGCA+AGG 0.561414 3.4:+19292579 MS.gene93584:intron
CTACAATAATGTCATTAATG+AGG 0.565892 3.4:+19292630 MS.gene93584:CDS
GAATATTCTTGACCATGAGA+TGG 0.567125 3.4:-19292195 None:intergenic
TCTGCAGCCATGAAAGCTAC+GGG 0.571418 3.4:+19290728 None:intergenic
TTGTAGAATTTAACTCCCAT+AGG 0.573321 3.4:-19292613 None:intergenic
ACATATTTAGAGCATCTGGC+AGG 0.577817 3.4:-19293128 None:intergenic
ATGTGAAGGGCTACTATGCA+TGG 0.578020 3.4:+19297304 MS.gene93584:CDS
TTTGCTCATCCAATTACGTA+TGG 0.581205 3.4:+19294285 MS.gene93584:CDS
CTGCAAAAGTTCCTTCTCAA+GGG 0.584964 3.4:+19297438 MS.gene93584:CDS
AAGGAGCTTCAAATATAGAT+GGG 0.587590 3.4:+19291735 MS.gene93584:CDS
CTTGAAGCAAAAGTCTGCAT+AGG 0.590277 3.4:-19293018 None:intergenic
CATACAGATTCTCCATCTCA+TGG 0.592212 3.4:+19292183 MS.gene93584:CDS
TACACCATTAATGGATACCA+TGG 0.597109 3.4:+19293092 MS.gene93584:CDS
AAGGGAGCAGTCAATCCTAT+GGG 0.598556 3.4:+19292598 MS.gene93584:CDS
ACCTGGATGTTGTTTAGTGA+AGG 0.598890 3.4:-19291780 None:intergenic
ACCTTCACTAAACAACATCC+AGG 0.605197 3.4:+19291779 MS.gene93584:CDS
ACAAGATGATGAATTCCCTC+CGG 0.607191 3.4:-19295284 None:intergenic
CAGAGATGGTGCAAATGTGA+AGG 0.608155 3.4:+19297290 MS.gene93584:intron
TAGGTCATGTTGATATGGGT+TGG 0.611086 3.4:-19294447 None:intergenic
TATTTAGAGCATCTGGCAGG+TGG 0.615635 3.4:-19293125 None:intergenic
AATGAAGCAGCATAGTGACT+TGG 0.621907 3.4:-19290827 None:intergenic
GCTTCAAATATAGATGGGAG+AGG 0.623026 3.4:+19291740 MS.gene93584:CDS
CTCCAATATTACCACTGCTG+TGG 0.630018 3.4:-19291963 None:intergenic
AAGGATGATATCATTGATTG+GGG 0.630368 3.4:-19294315 None:intergenic
CTGGCTATACGTCTATCCGG+AGG 0.651184 3.4:+19295268 MS.gene93584:CDS
TGGCTATACGTCTATCCGGA+GGG 0.653048 3.4:+19295269 MS.gene93584:CDS
AAAATTGGGGACCACAGCAG+TGG 0.657155 3.4:+19291952 MS.gene93584:CDS
ATATCGTATACAGAGGGCAA+GGG 0.659362 3.4:+19292580 MS.gene93584:intron
AGAGATGGTGCAAATGTGAA+GGG 0.682450 3.4:+19297291 MS.gene93584:intron
ACCATTAATGGATACCATGG+AGG 0.695140 3.4:+19293095 MS.gene93584:CDS
ATTCCAAAGAGAAAATCAGG+AGG 0.702676 3.4:-19290866 None:intergenic
AATGCTTTGTGCATAATACG+TGG 0.785346 3.4:-19294421 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr3.4:19295558-19295577 MS.gene93584:intron 0.0%
!! TATATATATATATATATATT+TGG - chr3.4:19295556-19295575 None:intergenic 0.0%
!!! TATATTTATTAATTTTTTTA+TGG - chr3.4:19292087-19292106 None:intergenic 0.0%
!! ATGGTAAAATAAAATATTTA+TGG - chr3.4:19292068-19292087 None:intergenic 10.0%
!! ATTAATAAATATATTGAACT+AGG + chr3.4:19292094-19292113 MS.gene93584:intron 10.0%
!! ATTTAAATAGTAACTATATA+AGG - chr3.4:19292675-19292694 None:intergenic 10.0%
!! CTTAATTTAATGAATAAAAT+AGG + chr3.4:19292982-19293001 MS.gene93584:intron 10.0%
!! GTTTATATGATAAAAAAATT+TGG + chr3.4:19294225-19294244 MS.gene93584:intron 10.0%
!! TTAATAAATATATTGAACTA+GGG + chr3.4:19292095-19292114 MS.gene93584:intron 10.0%
!!! AAAATATTACAAGATTTTTA+CGG + chr3.4:19292358-19292377 MS.gene93584:intron 10.0%
!!! AAATATTACATGATTTTTTA+TGG + chr3.4:19292334-19292353 MS.gene93584:intron 10.0%
!!! AAATTGAGTTTATAATATTT+TGG - chr3.4:19296903-19296922 None:intergenic 10.0%
!!! AATATTTAACTTGATTAATA+AGG + chr3.4:19292245-19292264 MS.gene93584:intron 10.0%
!!! ATTTATTTTATTTTTGCAAT+AGG - chr3.4:19292893-19292912 None:intergenic 10.0%
!!! TATTAAGATTTTTTTTTTTG+AGG - chr3.4:19296876-19296895 None:intergenic 10.0%
!!! TGATTTTTTCAAATTATTAA+CGG + chr3.4:19293733-19293752 MS.gene93584:intron 10.0%
!!! TTTATTTTATTTTTGCAATA+GGG - chr3.4:19292892-19292911 None:intergenic 10.0%
!!! TTTTCCTTAATTTAAAAATA+AGG + chr3.4:19294043-19294062 MS.gene93584:intron 10.0%
!! AAAATACTATGAAATTACTA+AGG - chr3.4:19293326-19293345 None:intergenic 15.0%
!! AAGCCATTATATAAAAAAAT+CGG + chr3.4:19294531-19294550 MS.gene93584:intron 15.0%
!! AATATAGTGAAATAGAATTA+GGG - chr3.4:19296809-19296828 None:intergenic 15.0%
!! ACATTAATTAATTAACTCTT+AGG + chr3.4:19296422-19296441 MS.gene93584:intron 15.0%
!! ACTTCAAAAAAAAAAATGAT+AGG + chr3.4:19291663-19291682 MS.gene93584:intron 15.0%
!! ATAAAGATTATGAAAGAAAT+TGG + chr3.4:19292152-19292171 MS.gene93584:CDS 15.0%
!! ATTAATTAATTAACTCTTAG+GGG + chr3.4:19296424-19296443 MS.gene93584:intron 15.0%
!! ATTTAATGAATAAAATAGGA+AGG + chr3.4:19292986-19293005 MS.gene93584:intron 15.0%
!! CATTAATTAATTAACTCTTA+GGG + chr3.4:19296423-19296442 MS.gene93584:intron 15.0%
!! TAATATAGTGAAATAGAATT+AGG - chr3.4:19296810-19296829 None:intergenic 15.0%
!! TAATCAATAAATTCTTTCTA+AGG - chr3.4:19297246-19297265 None:intergenic 15.0%
!! TATTTAAAAACTATCAAGTA+CGG + chr3.4:19293629-19293648 MS.gene93584:intron 15.0%
!! TGAATTTGAAAGAAAAAAAA+TGG + chr3.4:19291610-19291629 MS.gene93584:intron 15.0%
!! TGTTTATTTAAGAGTTTAAA+GGG - chr3.4:19297206-19297225 None:intergenic 15.0%
!! TTGATTCTTAGATTAAATTT+AGG - chr3.4:19295795-19295814 None:intergenic 15.0%
!! TTGTTTATTTAAGAGTTTAA+AGG - chr3.4:19297207-19297226 None:intergenic 15.0%
!!! ATTTGATTTAAAAACTGTTT+AGG + chr3.4:19294928-19294947 MS.gene93584:intron 15.0%
!!! CTTTCAAATTCAATATTTTA+GGG - chr3.4:19291602-19291621 None:intergenic 15.0%
!!! GAACATAATATTAATTTTTC+AGG + chr3.4:19294262-19294281 MS.gene93584:intron 15.0%
!!! GAAGAATTTAAAATTATCAA+AGG + chr3.4:19294366-19294385 MS.gene93584:CDS 15.0%
!!! TAAATTTTTTATATATACGG+TGG + chr3.4:19292760-19292779 MS.gene93584:intron 15.0%
!!! TAATATGCTCATAATTTTAT+CGG + chr3.4:19293258-19293277 MS.gene93584:intron 15.0%
!!! TAGAAAGAATTTATTGATTA+TGG + chr3.4:19297246-19297265 MS.gene93584:intron 15.0%
!!! TATAAAAAATTTAGTTCACA+TGG - chr3.4:19292753-19292772 None:intergenic 15.0%
!!! TATATTATTTGTTGTGAATT+AGG + chr3.4:19295676-19295695 MS.gene93584:intron 15.0%
!!! TATGCCTTATTTTTAAATTA+AGG - chr3.4:19294050-19294069 None:intergenic 15.0%
!!! TCTTTCAAATTCAATATTTT+AGG - chr3.4:19291603-19291622 None:intergenic 15.0%
!!! TTATAAACTCAATTTTTTGT+TGG + chr3.4:19296908-19296927 MS.gene93584:intron 15.0%
!! AAAAATACCATATAATGCTT+TGG + chr3.4:19295191-19295210 MS.gene93584:intron 20.0%
!! AAAATACCATATAATGCTTT+GGG + chr3.4:19295192-19295211 MS.gene93584:intron 20.0%
!! AACAAGCAAAATAAATTTAG+TGG - chr3.4:19290959-19290978 None:intergenic 20.0%
!! AATAAATTATTAGAGTAACC+TGG - chr3.4:19291800-19291819 None:intergenic 20.0%
!! AATACTTACAAAATTAGCAT+AGG - chr3.4:19291164-19291183 None:intergenic 20.0%
!! ACAACTGTTAAGTTTAAATA+GGG - chr3.4:19293425-19293444 None:intergenic 20.0%
!! ACAAGCAAAATAAATTTAGT+GGG - chr3.4:19290958-19290977 None:intergenic 20.0%
!! ACAATAACTATATTATGTTG+CGG + chr3.4:19294816-19294835 MS.gene93584:intron 20.0%
!! ATTTGAAAGAAAAAAAATGG+AGG + chr3.4:19291613-19291632 MS.gene93584:intron 20.0%
!! GTTTATTTAAGAGTTTAAAG+GGG - chr3.4:19297205-19297224 None:intergenic 20.0%
!! TACAACTGTTAAGTTTAAAT+AGG - chr3.4:19293426-19293445 None:intergenic 20.0%
!! TGAAAAAGAAATTAGAACTA+TGG - chr3.4:19296465-19296484 None:intergenic 20.0%
!! TGAATATTCTTATCTTACTT+GGG - chr3.4:19292220-19292239 None:intergenic 20.0%
!!! AAACTTGTTTTTTTCAATCT+AGG + chr3.4:19293545-19293564 MS.gene93584:intron 20.0%
!!! AATTCTTCTTTTGTGAATTT+TGG - chr3.4:19294354-19294373 None:intergenic 20.0%
!!! AATTTTATGTTTGATGTCAT+AGG + chr3.4:19293876-19293895 MS.gene93584:intron 20.0%
!!! ATTCTTCTTTTGTGAATTTT+GGG - chr3.4:19294353-19294372 None:intergenic 20.0%
!!! CAACCGATTTTTTTATATAA+TGG - chr3.4:19294537-19294556 None:intergenic 20.0%
!!! GATATCTTTTAAATCTCTAT+TGG + chr3.4:19294856-19294875 MS.gene93584:intron 20.0%
!!! TATATAATGGCTTATTTTAC+TGG - chr3.4:19294524-19294543 None:intergenic 20.0%
!!! TTGTTTTGTGAATATATTTC+AGG + chr3.4:19296606-19296625 MS.gene93584:intron 20.0%
!!! TTTTCAAAAAGGACTAAAAT+AGG + chr3.4:19291075-19291094 MS.gene93584:intron 20.0%
!!! TTTTCTTCAAAAGACAAAAA+CGG - chr3.4:19292035-19292054 None:intergenic 20.0%
! AAAAATAAAAGATCATACCG+AGG - chr3.4:19294651-19294670 None:intergenic 25.0%
! ACTCAATCAATTGATTGTAT+AGG - chr3.4:19295511-19295530 None:intergenic 25.0%
! CTACAATAATGTCATTAATG+AGG + chr3.4:19292630-19292649 MS.gene93584:CDS 25.0%
! GAATTGATCTCATAATTAAC+AGG - chr3.4:19297072-19297091 None:intergenic 25.0%
! GAGTAGGAAGTAAAATATTA+GGG + chr3.4:19297094-19297113 MS.gene93584:intron 25.0%
! GATTATGAAAGAAATTGGTT+TGG + chr3.4:19292157-19292176 MS.gene93584:CDS 25.0%
! GCTATATGACATGAAAAATT+TGG - chr3.4:19294738-19294757 None:intergenic 25.0%
! GTGAATATTCTTATCTTACT+TGG - chr3.4:19292221-19292240 None:intergenic 25.0%
! TATAGTTATTGTAGCTTCAT+AGG - chr3.4:19294808-19294827 None:intergenic 25.0%
! TGAATATTTAGTTAGCTAGA+TGG - chr3.4:19296538-19296557 None:intergenic 25.0%
! TTATTGCTTCTTCCTAATAT+GGG - chr3.4:19295414-19295433 None:intergenic 25.0%
! TTCATAGTAGTGAGTAATTA+GGG - chr3.4:19293929-19293948 None:intergenic 25.0%
! TTGATTGAGCAGAAAAAATT+GGG + chr3.4:19291938-19291957 MS.gene93584:intron 25.0%
!! AAATTAAGTTTGTTCTTGGA+GGG - chr3.4:19296000-19296019 None:intergenic 25.0%
!! ACGATTTGGAATAATTTATG+TGG + chr3.4:19297368-19297387 MS.gene93584:CDS 25.0%
!! GTAGAAATTAAGTTTGTTCT+TGG - chr3.4:19296004-19296023 None:intergenic 25.0%
!! TAAGGATGATATCATTGATT+GGG - chr3.4:19294319-19294338 None:intergenic 25.0%
!! TGATTTTTATCATCGATACA+AGG + chr3.4:19291987-19292006 MS.gene93584:CDS 25.0%
!! TTTTCTCTTTACATGATACA+AGG - chr3.4:19295173-19295192 None:intergenic 25.0%
!!! ATATTTGGCCTTATACAATT+TGG - chr3.4:19293234-19293253 None:intergenic 25.0%
!!! TATTTTGAAACTATGAAGCA+CGG - chr3.4:19293806-19293825 None:intergenic 25.0%
!!! TTGACTTCTTTGTTTTTGTT+TGG + chr3.4:19294698-19294717 MS.gene93584:intron 25.0%
!!! TTGTTATTTTTGACCCATTA+GGG + chr3.4:19293389-19293408 MS.gene93584:intron 25.0%
!!! TTGTTTTATACGATGTTTGA+TGG - chr3.4:19295072-19295091 None:intergenic 25.0%
!!! TTTGTTATTTTTGACCCATT+AGG + chr3.4:19293388-19293407 MS.gene93584:intron 25.0%
AAATCAAAGGAGGTAACTTT+AGG - chr3.4:19296147-19296166 None:intergenic 30.0%
AAGGAGCTTCAAATATAGAT+GGG + chr3.4:19291735-19291754 MS.gene93584:CDS 30.0%
AATACTTTGACATTGTTGTC+AGG + chr3.4:19291196-19291215 MS.gene93584:intron 30.0%
AATCAAAGGAGGTAACTTTA+GGG - chr3.4:19296146-19296165 None:intergenic 30.0%
ACACGATTGAGCATTATTTA+AGG - chr3.4:19296199-19296218 None:intergenic 30.0%
ACCTCATTCGTAAGTATTTA+TGG + chr3.4:19294490-19294509 MS.gene93584:intron 30.0%
ACTTAAGCTTACACTACTTT+AGG - chr3.4:19292865-19292884 None:intergenic 30.0%
AGAGAAACTTGGAAAATCAA+AGG - chr3.4:19296160-19296179 None:intergenic 30.0%
AGCTCTTGAAGATGAATATA+AGG + chr3.4:19292828-19292847 MS.gene93584:intron 30.0%
ATACTTTGACATTGTTGTCA+GGG + chr3.4:19291197-19291216 MS.gene93584:intron 30.0%
ATAGAACACTTCAAATCTCA+GGG - chr3.4:19291228-19291247 None:intergenic 30.0%
ATATATGCAGTAACCAATGA+CGG - chr3.4:19291431-19291450 None:intergenic 30.0%
ATGAGAAGAGATTGGAAAAT+GGG - chr3.4:19296026-19296045 None:intergenic 30.0%
ATGCATTGTTGCTAATAATG+TGG - chr3.4:19290921-19290940 None:intergenic 30.0%
ATTCACACCAAGAAAATCAT+AGG - chr3.4:19294394-19294413 None:intergenic 30.0%
ATTGTATAAGGCCAAATATC+AGG + chr3.4:19293235-19293254 MS.gene93584:CDS 30.0%
ATTTAGTGGGAAGTCAATAA+TGG - chr3.4:19290945-19290964 None:intergenic 30.0%
CAAGAAATGTTTACCCAATT+CGG + chr3.4:19295870-19295889 MS.gene93584:intron 30.0%
CAATCAATGATATCATCCTT+AGG + chr3.4:19294318-19294337 MS.gene93584:CDS 30.0%
CGAGTAGGAAGTAAAATATT+AGG + chr3.4:19297093-19297112 MS.gene93584:intron 30.0%
CTAAGGATGATATCATTGAT+TGG - chr3.4:19294320-19294339 None:intergenic 30.0%
CTCAGTAGAAAAAAAAGAAG+AGG + chr3.4:19291556-19291575 MS.gene93584:intron 30.0%
CTGAAAAATTTGCACAAACA+AGG - chr3.4:19291711-19291730 None:intergenic 30.0%
CTTAGTGAAGCAAAACTTTA+TGG + chr3.4:19295225-19295244 MS.gene93584:intron 30.0%
CTTATTGCTTCTTCCTAATA+TGG - chr3.4:19295415-19295434 None:intergenic 30.0%
CTTGATTGAGCAGAAAAAAT+TGG + chr3.4:19291937-19291956 MS.gene93584:intron 30.0%
GAAAAAAAATGGAGGAAAGT+TGG + chr3.4:19291621-19291640 MS.gene93584:intron 30.0%
GCTCTTGAAGATGAATATAA+GGG + chr3.4:19292829-19292848 MS.gene93584:intron 30.0%
GTTCATACTTTATTGCTTGA+AGG - chr3.4:19296721-19296740 None:intergenic 30.0%
GTTCATAGTAGTGAGTAATT+AGG - chr3.4:19293930-19293949 None:intergenic 30.0%
TAAGGTTTATACCATTTGCT+AGG - chr3.4:19292657-19292676 None:intergenic 30.0%
TAATTAACTCTTAGGGGAAA+AGG + chr3.4:19296430-19296449 MS.gene93584:intron 30.0%
TACAACAAAAAGTTGTGTTG+TGG - chr3.4:19295012-19295031 None:intergenic 30.0%
TAGGGAAACTTGTAAATCTA+GGG - chr3.4:19296791-19296810 None:intergenic 30.0%
TATTGTTCATGAGAAGAGAT+TGG - chr3.4:19296034-19296053 None:intergenic 30.0%
TCCATAAATACTTACGAATG+AGG - chr3.4:19294494-19294513 None:intergenic 30.0%
TCTCTTAATCCATCATATAG+TGG - chr3.4:19292449-19292468 None:intergenic 30.0%
TGAGCATATTACCTGATATT+TGG - chr3.4:19293249-19293268 None:intergenic 30.0%
TGATCCTAATACCATCTTTA+CGG - chr3.4:19296670-19296689 None:intergenic 30.0%
TGATTGAGCAGAAAAAATTG+GGG + chr3.4:19291939-19291958 MS.gene93584:intron 30.0%
TGTGAATATATTTCAGGCAT+TGG + chr3.4:19296612-19296631 MS.gene93584:intron 30.0%
TTAGGGAAACTTGTAAATCT+AGG - chr3.4:19296792-19296811 None:intergenic 30.0%
TTATACATAGCTCGTCATAA+AGG + chr3.4:19290978-19290997 MS.gene93584:intron 30.0%
TTCAAAGAGTCTAATCTACA+AGG - chr3.4:19297049-19297068 None:intergenic 30.0%
TTCCCTTGTACCAAAAAAAA+AGG + chr3.4:19292273-19292292 MS.gene93584:intron 30.0%
TTGATGCCTCAAAAAATATG+AGG + chr3.4:19291368-19291387 MS.gene93584:intron 30.0%
TTGCTTCACTAAGAATCAAA+AGG - chr3.4:19295218-19295237 None:intergenic 30.0%
TTGTAGAATTTAACTCCCAT+AGG - chr3.4:19292616-19292635 None:intergenic 30.0%
TTGTGTAAGCATGTCAATTA+GGG - chr3.4:19295641-19295660 None:intergenic 30.0%
! AAAGGTTCCTATGATTTTCT+TGG + chr3.4:19294384-19294403 MS.gene93584:CDS 30.0%
! AAGGATGATATCATTGATTG+GGG - chr3.4:19294318-19294337 None:intergenic 30.0%
! AATTAAGTTTGTTCTTGGAG+GGG - chr3.4:19295999-19296018 None:intergenic 30.0%
! AGACGTTTTCATCTATATAG+TGG - chr3.4:19292414-19292433 None:intergenic 30.0%
! ATTCTTTTGCCACTATATGA+TGG + chr3.4:19292437-19292456 MS.gene93584:intron 30.0%
! ATTTTCCGATAGCTATGAAT+GGG + chr3.4:19297329-19297348 MS.gene93584:CDS 30.0%
! CAATAATTTTCACTCATCCA+AGG + chr3.4:19296058-19296077 MS.gene93584:intron 30.0%
! CGCAACATTTCTTTTCAAAA+AGG + chr3.4:19291064-19291083 MS.gene93584:intron 30.0%
! CTCTATTTATCTTTTGCTTG+TGG - chr3.4:19295833-19295852 None:intergenic 30.0%
! CTTGTTTGTGCAAATTTTTC+AGG + chr3.4:19291709-19291728 MS.gene93584:intron 30.0%
! GAAATTAAGTTTGTTCTTGG+AGG - chr3.4:19296001-19296020 None:intergenic 30.0%
! GTGATTTTGTTCGAAACAAA+TGG - chr3.4:19294773-19294792 None:intergenic 30.0%
!! AGAGCACTTGACTTTTTATT+TGG + chr3.4:19293988-19294007 MS.gene93584:CDS 30.0%
!! CACTTGACTTTTTATTTGGA+TGG + chr3.4:19293992-19294011 MS.gene93584:CDS 30.0%
!! CTATATGATGGATTAAGAGA+CGG + chr3.4:19292449-19292468 MS.gene93584:intron 30.0%
!! GTTAGCTAGATGGATTTTTA+TGG - chr3.4:19296528-19296547 None:intergenic 30.0%
!!! AGCCTTTTTTTTTGGTACAA+GGG - chr3.4:19292278-19292297 None:intergenic 30.0%
!!! ATTTTTTCTGCTCAATCAAG+AGG - chr3.4:19291937-19291956 None:intergenic 30.0%
!!! TAGCCTTTTTTTTTGGTACA+AGG - chr3.4:19292279-19292298 None:intergenic 30.0%
!!! TTTTTTATATATACGGTGGC+AGG + chr3.4:19292764-19292783 MS.gene93584:intron 30.0%
!!! TTTTTTCTGCTCAATCAAGA+GGG - chr3.4:19291936-19291955 None:intergenic 30.0%
AAAGTGATGAGCAACAATGT+AGG - chr3.4:19293189-19293208 None:intergenic 35.0%
AACTTGTGAAAATAGGGTTC+CGG - chr3.4:19293515-19293534 None:intergenic 35.0%
AAGTGATGAGCAACAATGTA+GGG - chr3.4:19293188-19293207 None:intergenic 35.0%
AATGCTTTGTGCATAATACG+TGG - chr3.4:19294424-19294443 None:intergenic 35.0%
ACACTAGCTAGCTAAATGTT+TGG + chr3.4:19296501-19296520 MS.gene93584:intron 35.0%
AGAAGCAATAAGTCTCCATA+AGG + chr3.4:19295423-19295442 MS.gene93584:intron 35.0%
AGAGAAAATCAGGAGGAAAA+AGG - chr3.4:19290862-19290881 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr3.4:19293522-19293541 None:intergenic 35.0%
AGGGAATAACAAAACCCTAA+TGG - chr3.4:19293406-19293425 None:intergenic 35.0%
AGTATAGAGAGACCCATATT+AGG + chr3.4:19295399-19295418 MS.gene93584:intron 35.0%
ATCGTTAGACTACCTTTGAA+AGG + chr3.4:19297128-19297147 MS.gene93584:intron 35.0%
ATGAAGAATGGTGTAGCTAT+TGG + chr3.4:19294623-19294642 MS.gene93584:CDS 35.0%
ATTAATGAGGTCCTAGCAAA+TGG + chr3.4:19292643-19292662 MS.gene93584:CDS 35.0%
ATTCCAAAGAGAAAATCAGG+AGG - chr3.4:19290869-19290888 None:intergenic 35.0%
ATTTGTCAACATGTGTACCT+TGG + chr3.4:19291524-19291543 MS.gene93584:intron 35.0%
CAATGAAACAGTCTTACGAA+GGG - chr3.4:19292796-19292815 None:intergenic 35.0%
CACCAATAAATTTACACGTG+TGG + chr3.4:19295710-19295729 MS.gene93584:intron 35.0%
CAGAGAAAAAAGATAGAGGA+GGG - chr3.4:19290759-19290778 None:intergenic 35.0%
CATACTTTATTGCTTGAAGG+AGG - chr3.4:19296718-19296737 None:intergenic 35.0%
CATAGAACACTTCAAATCTC+AGG - chr3.4:19291229-19291248 None:intergenic 35.0%
CATGAGAAGAGATTGGAAAA+TGG - chr3.4:19296027-19296046 None:intergenic 35.0%
CATTGTTGCTAATAATGTGG+TGG - chr3.4:19290918-19290937 None:intergenic 35.0%
CCAATTCCAAAGAGAAAATC+AGG - chr3.4:19290872-19290891 None:intergenic 35.0%
CCAGTGTACATTACTGAAAA+TGG + chr3.4:19295338-19295357 MS.gene93584:CDS 35.0%
CCATTAATGGTGTATGAAAC+AGG - chr3.4:19293086-19293105 None:intergenic 35.0%
CCATTGAATATTTGAGCTCA+AGG + chr3.4:19291871-19291890 MS.gene93584:intron 35.0%
CCTGTTTCATACACCATTAA+TGG + chr3.4:19293083-19293102 MS.gene93584:CDS 35.0%
CCTTGAGCTCAAATATTCAA+TGG - chr3.4:19291874-19291893 None:intergenic 35.0%
CTAGCTAGTGTTAAGAACTA+TGG - chr3.4:19296492-19296511 None:intergenic 35.0%
CTCCACACGTGTAAATTTAT+TGG - chr3.4:19295715-19295734 None:intergenic 35.0%
CTTCAAGACATTTGGAGATA+GGG + chr3.4:19293034-19293053 MS.gene93584:CDS 35.0%
CTTCGTAAGACTGTTTCATT+GGG + chr3.4:19292795-19292814 MS.gene93584:intron 35.0%
GAAACTTGGAAAATCAAAGG+AGG - chr3.4:19296157-19296176 None:intergenic 35.0%
GAAGGAGCTTCAAATATAGA+TGG + chr3.4:19291734-19291753 MS.gene93584:CDS 35.0%
GAAGTAGGTCATGTTGATAT+GGG - chr3.4:19294454-19294473 None:intergenic 35.0%
GAATATTCTTGACCATGAGA+TGG - chr3.4:19292198-19292217 None:intergenic 35.0%
GATCCTAATACCATCTTTAC+GGG - chr3.4:19296669-19296688 None:intergenic 35.0%
GCAATGATATCGTATACAGA+GGG + chr3.4:19292574-19292593 MS.gene93584:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr3.4:19293521-19293540 None:intergenic 35.0%
GCTCGTCAAAAAGGAAAAAT+TGG + chr3.4:19293898-19293917 MS.gene93584:CDS 35.0%
GGGAATAACAAAACCCTAAT+GGG - chr3.4:19293405-19293424 None:intergenic 35.0%
GTCTAACAATGACCTACTAT+GGG + chr3.4:19295892-19295911 MS.gene93584:intron 35.0%
GTCTTGAGCATGTTTACAAT+AGG - chr3.4:19291409-19291428 None:intergenic 35.0%
GTTGTGTAAGCATGTCAATT+AGG - chr3.4:19295642-19295661 None:intergenic 35.0%
TAAAACGACATCGAAAACAC+CGG - chr3.4:19291015-19291034 None:intergenic 35.0%
TAGCCAGAGAAAAAAGATAG+AGG - chr3.4:19290763-19290782 None:intergenic 35.0%
TAGCTATTGGTAGAAAATCG+TGG - chr3.4:19296294-19296313 None:intergenic 35.0%
TAGTCAATCAAATGCGATGT+AGG + chr3.4:19293293-19293312 MS.gene93584:intron 35.0%
TATGAGATCAATTCTCGAGT+AGG + chr3.4:19297078-19297097 MS.gene93584:intron 35.0%
TATGTTGGAAATTGCTCTAC+TGG + chr3.4:19293146-19293165 MS.gene93584:CDS 35.0%
TATTCATCTTCAAGAGCTTG+TGG - chr3.4:19292826-19292845 None:intergenic 35.0%
TCACCAAATTATCCTCCTTA+TGG - chr3.4:19295441-19295460 None:intergenic 35.0%
TCGGCAACACTATTAGAATA+TGG - chr3.4:19293952-19293971 None:intergenic 35.0%
TCTAACAATGACCTACTATG+GGG + chr3.4:19295893-19295912 MS.gene93584:intron 35.0%
TCTCCATAAGGAGGATAATT+TGG + chr3.4:19295435-19295454 MS.gene93584:intron 35.0%
TGAAGTAGGTCATGTTGATA+TGG - chr3.4:19294455-19294474 None:intergenic 35.0%
TGCAATGATATCGTATACAG+AGG + chr3.4:19292573-19292592 MS.gene93584:intron 35.0%
TGTCACTATGTGTATTGTGT+TGG + chr3.4:19291478-19291497 MS.gene93584:intron 35.0%
TTGATCACAGCAATGAAGAA+TGG + chr3.4:19294611-19294630 MS.gene93584:intron 35.0%
TTTGCTCATCCAATTACGTA+TGG + chr3.4:19294285-19294304 MS.gene93584:CDS 35.0%
! AAAAGGCCCAAAGCATTATA+TGG - chr3.4:19295201-19295220 None:intergenic 35.0%
! AAATGGAGGAAAGTTGGTTA+AGG + chr3.4:19291627-19291646 MS.gene93584:intron 35.0%
! AATGGAGGAAAGTTGGTTAA+GGG + chr3.4:19291628-19291647 MS.gene93584:intron 35.0%
! ACTATGCTGCTTCATTCAAT+AGG + chr3.4:19290834-19290853 MS.gene93584:CDS 35.0%
! AGAGTTTTCTCAATTTCTGC+TGG + chr3.4:19293486-19293505 MS.gene93584:intron 35.0%
! CATTTTCCGATAGCTATGAA+TGG + chr3.4:19297328-19297347 MS.gene93584:CDS 35.0%
! CCATTTTCAGTAATGTACAC+TGG - chr3.4:19295341-19295360 None:intergenic 35.0%
! CGAACTCGCATATTTTGTTA+GGG + chr3.4:19297166-19297185 MS.gene93584:intron 35.0%
! GAACTCGCATATTTTGTTAG+GGG + chr3.4:19297167-19297186 MS.gene93584:intron 35.0%
! GACTTTTGCTTCAAGACATT+TGG + chr3.4:19293026-19293045 MS.gene93584:CDS 35.0%
! GTGTTAACCTCCGATTTTTA+GGG - chr3.4:19292307-19292326 None:intergenic 35.0%
! TACACCATTAATGGATACCA+TGG + chr3.4:19293092-19293111 MS.gene93584:CDS 35.0%
! TCCAACATATTTAGAGCATC+TGG - chr3.4:19293135-19293154 None:intergenic 35.0%
! TCGAACTCGCATATTTTGTT+AGG + chr3.4:19297165-19297184 MS.gene93584:intron 35.0%
! TGTGTTAACCTCCGATTTTT+AGG - chr3.4:19292308-19292327 None:intergenic 35.0%
! TTTAGAGTCGTTCCTTTCAA+AGG - chr3.4:19297143-19297162 None:intergenic 35.0%
! TTTCCTCCTGATTTTCTCTT+TGG + chr3.4:19290863-19290882 MS.gene93584:CDS 35.0%
! TTTGAGAGGTTTTCTTGAGT+TGG - chr3.4:19296100-19296119 None:intergenic 35.0%
! TTTTCAGTAATGTACACTGG+TGG - chr3.4:19295338-19295357 None:intergenic 35.0%
! TTTTTCTGCTCAATCAAGAG+GGG - chr3.4:19291935-19291954 None:intergenic 35.0%
!! ACGATTTTTAGGAAGAATGC+AGG - chr3.4:19296319-19296338 None:intergenic 35.0%
!! AGGAGCGTTGATATGTTAAA+AGG - chr3.4:19295153-19295172 None:intergenic 35.0%
!! TGTTAACCTCCGATTTTTAG+GGG - chr3.4:19292306-19292325 None:intergenic 35.0%
!!! CCTGATTTTCTCTTTGGAAT+TGG + chr3.4:19290869-19290888 MS.gene93584:CDS 35.0%
!!! CGTAGCACAATTTTGAGATA+AGG - chr3.4:19296256-19296275 None:intergenic 35.0%
!!! GGGAATGTAGCCTTTTTTTT+TGG - chr3.4:19292286-19292305 None:intergenic 35.0%
!!! GTGCAAATTTTTCAGGTAGA+AGG + chr3.4:19291716-19291735 MS.gene93584:intron 35.0%
!!! TTTTTGAGGCATCAAGTCAT+TGG - chr3.4:19291363-19291382 None:intergenic 35.0%
AAGAATGCAGGTGTAGCTAT+TGG - chr3.4:19296307-19296326 None:intergenic 40.0%
AATGAAGCAGCATAGTGACT+TGG - chr3.4:19290830-19290849 None:intergenic 40.0%
ACAAGATGATGAATTCCCTC+CGG - chr3.4:19295287-19295306 None:intergenic 40.0%
ACAATAGGTTTGATCGCACA+CGG - chr3.4:19291394-19291413 None:intergenic 40.0%
ACCTTCACTAAACAACATCC+AGG + chr3.4:19291779-19291798 MS.gene93584:CDS 40.0%
AGAGATGGTGCAAATGTGAA+GGG + chr3.4:19297291-19297310 MS.gene93584:intron 40.0%
AGCAATAAGTCTCCATAAGG+AGG + chr3.4:19295426-19295445 MS.gene93584:intron 40.0%
AGGATTCTCAGCTTCCTAAT+GGG - chr3.4:19295491-19295510 None:intergenic 40.0%
AGGTCATTGTTAGACCGAAT+TGG - chr3.4:19295887-19295906 None:intergenic 40.0%
ATAATGTGGTGGTATGAACC+TGG - chr3.4:19290907-19290926 None:intergenic 40.0%
ATATCGTATACAGAGGGCAA+GGG + chr3.4:19292580-19292599 MS.gene93584:intron 40.0%
ATATCTTGTCGAACATGCTC+AGG - chr3.4:19297026-19297045 None:intergenic 40.0%
ATGAAGCACGGATATGGATA+CGG - chr3.4:19293794-19293813 None:intergenic 40.0%
ATGTCATAGGCTCGTCAAAA+AGG + chr3.4:19293889-19293908 MS.gene93584:intron 40.0%
CAATCAAATGCGATGTAGGA+GGG + chr3.4:19293297-19293316 MS.gene93584:intron 40.0%
CATAAAGGCCACTGTATTTC+CGG + chr3.4:19290993-19291012 MS.gene93584:intron 40.0%
CATACAGATTCTCCATCTCA+TGG + chr3.4:19292183-19292202 MS.gene93584:CDS 40.0%
CCAATGAAACAGTCTTACGA+AGG - chr3.4:19292797-19292816 None:intergenic 40.0%
CCAGAGAAAAAAGATAGAGG+AGG - chr3.4:19290760-19290779 None:intergenic 40.0%
CCTTCGTAAGACTGTTTCAT+TGG + chr3.4:19292794-19292813 MS.gene93584:intron 40.0%
CTAACAATGACCTACTATGG+GGG + chr3.4:19295894-19295913 MS.gene93584:intron 40.0%
CTACTGAGAATCGTAATCCA+AGG - chr3.4:19291544-19291563 None:intergenic 40.0%
CTGCAAAAGTTCCTTCTCAA+GGG + chr3.4:19297438-19297457 MS.gene93584:CDS 40.0%
CTTGAAGCAAAAGTCTGCAT+AGG - chr3.4:19293021-19293040 None:intergenic 40.0%
CTTGAAGGAGGAATTTGAGA+TGG - chr3.4:19296706-19296725 None:intergenic 40.0%
GAAAAAAGATAGAGGAGGGA+AGG - chr3.4:19290755-19290774 None:intergenic 40.0%
GAAACTATGAAGCACGGATA+TGG - chr3.4:19293800-19293819 None:intergenic 40.0%
GACAACACTTGTAAACACCT+TGG - chr3.4:19296078-19296097 None:intergenic 40.0%
GCTTCAAATATAGATGGGAG+AGG + chr3.4:19291740-19291759 MS.gene93584:CDS 40.0%
GCTTCAAGACATTTGGAGAT+AGG + chr3.4:19293033-19293052 MS.gene93584:CDS 40.0%
GGATAGTGACCATACGTAAT+TGG - chr3.4:19294297-19294316 None:intergenic 40.0%
GGCTACATTCCCCTAAAAAT+CGG + chr3.4:19292294-19292313 MS.gene93584:intron 40.0%
GGTCATTGTTAGACCGAATT+GGG - chr3.4:19295886-19295905 None:intergenic 40.0%
GGTCTAACAATGACCTACTA+TGG + chr3.4:19295891-19295910 MS.gene93584:intron 40.0%
TAACAATGACCTACTATGGG+GGG + chr3.4:19295895-19295914 MS.gene93584:intron 40.0%
TACATTCCCCTAAAAATCGG+AGG + chr3.4:19292297-19292316 MS.gene93584:intron 40.0%
TAGCCCGTAAAGATGGTATT+AGG + chr3.4:19296663-19296682 MS.gene93584:CDS 40.0%
TAGGATTCTCAGCTTCCTAA+TGG - chr3.4:19295492-19295511 None:intergenic 40.0%
TAGGTCATGTTGATATGGGT+TGG - chr3.4:19294450-19294469 None:intergenic 40.0%
TCAATCAAATGCGATGTAGG+AGG + chr3.4:19293296-19293315 MS.gene93584:intron 40.0%
TCTCAATTTCTGCTGGATTC+CGG + chr3.4:19293493-19293512 MS.gene93584:intron 40.0%
TGCATCCCATTCATAGCTAT+CGG - chr3.4:19297337-19297356 None:intergenic 40.0%
TGCTGCAGCCAAATTGTATA+AGG + chr3.4:19293223-19293242 MS.gene93584:CDS 40.0%
TGCTTCAAGAGAGAGAAACT+TGG - chr3.4:19296171-19296190 None:intergenic 40.0%
TGCTTGCATATCAGTGAAGT+AGG - chr3.4:19294469-19294488 None:intergenic 40.0%
TGGAGATAGGGTTAAGCATT+GGG + chr3.4:19293046-19293065 MS.gene93584:CDS 40.0%
TTATGTTGCGGTTGTGAACA+TGG + chr3.4:19294828-19294847 MS.gene93584:intron 40.0%
TTCTTGTAGAGTTGCCCATT+AGG + chr3.4:19295474-19295493 MS.gene93584:intron 40.0%
TTGGAGATAGGGTTAAGCAT+TGG + chr3.4:19293045-19293064 MS.gene93584:CDS 40.0%
! AACTTTATGGCTTGTGCAGA+CGG + chr3.4:19295238-19295257 MS.gene93584:intron 40.0%
! AATTGGTTCTTCTGCTTACC+AGG + chr3.4:19290886-19290905 MS.gene93584:CDS 40.0%
! ACATATTTAGAGCATCTGGC+AGG - chr3.4:19293131-19293150 None:intergenic 40.0%
! ACCATTAATGGATACCATGG+AGG + chr3.4:19293095-19293114 MS.gene93584:CDS 40.0%
! ACCTGGATGTTGTTTAGTGA+AGG - chr3.4:19291783-19291802 None:intergenic 40.0%
! AGAATCGTGGCACGATTTTT+AGG - chr3.4:19296330-19296349 None:intergenic 40.0%
! AGCCAAAAAGCAGAGTACTT+GGG - chr3.4:19297420-19297439 None:intergenic 40.0%
! GAGATACTTGGTTTGAGTCA+CGG + chr3.4:19296998-19297017 MS.gene93584:intron 40.0%
! GATATTGTTGTTGTTGCACG+AGG - chr3.4:19295769-19295788 None:intergenic 40.0%
! GCACGAGGTTACTTTGATAT+TGG - chr3.4:19295754-19295773 None:intergenic 40.0%
! GCCAGATGCTCTAAATATGT+TGG + chr3.4:19293131-19293150 MS.gene93584:CDS 40.0%
! GGAATTTGAGATGGCTATCA+TGG - chr3.4:19296697-19296716 None:intergenic 40.0%
! TCTACTTGCAGCTTTGTGAT+CGG - chr3.4:19293971-19293990 None:intergenic 40.0%
! TGTCCTTTTTGTTGCAGAGA+TGG + chr3.4:19297276-19297295 MS.gene93584:intron 40.0%
! TTTTCTGCTCAATCAAGAGG+GGG - chr3.4:19291934-19291953 None:intergenic 40.0%
!! ACATTTTGACGCAGTATGGA+AGG - chr3.4:19293592-19293611 None:intergenic 40.0%
!! ATCCCAAGTACTCTGCTTTT+TGG + chr3.4:19297415-19297434 MS.gene93584:CDS 40.0%
!! TTTCAGGCATTGGTCAATCA+AGG + chr3.4:19296622-19296641 MS.gene93584:intron 40.0%
!! TTTTGGGAGTCTGTTACCTA+AGG - chr3.4:19294337-19294356 None:intergenic 40.0%
!!! ACACGGCCTCATATTTTTTG+AGG - chr3.4:19291377-19291396 None:intergenic 40.0%
!!! ACACTTTTTGCTGTTGTCAC+CGG + chr3.4:19290782-19290801 MS.gene93584:CDS 40.0%
!!! CCTCCTCTATCTTTTTTCTC+TGG + chr3.4:19290757-19290776 MS.gene93584:CDS 40.0%
AACATGCTCAAGACCGTCAT+TGG + chr3.4:19291415-19291434 MS.gene93584:intron 45.0%
AAGGGAGCAGTCAATCCTAT+GGG + chr3.4:19292598-19292617 MS.gene93584:CDS 45.0%
ATGGGAGAGGACCAAGTATA+TGG + chr3.4:19291753-19291772 MS.gene93584:CDS 45.0%
ATGTGAAGGGCTACTATGCA+TGG + chr3.4:19297304-19297323 MS.gene93584:CDS 45.0%
CACATGTTGTGATGCAGTTC+CGG - chr3.4:19290804-19290823 None:intergenic 45.0%
CAGAGATGGTGCAAATGTGA+AGG + chr3.4:19297290-19297309 MS.gene93584:intron 45.0%
CGAAAACACCGGAAATACAG+TGG - chr3.4:19291004-19291023 None:intergenic 45.0%
CTCCAATATTACCACTGCTG+TGG - chr3.4:19291966-19291985 None:intergenic 45.0%
CTCTCAACCAAGTGACTTCT+CGG - chr3.4:19296961-19296980 None:intergenic 45.0%
CTCTTCAACCTCGAGATACT+TGG + chr3.4:19296986-19297005 MS.gene93584:intron 45.0%
GAACTGGCTATACGTCTATC+CGG + chr3.4:19295265-19295284 MS.gene93584:CDS 45.0%
GACCACAGCAGTGGTAATAT+TGG + chr3.4:19291961-19291980 MS.gene93584:CDS 45.0%
GACTCAAACCAAGTATCTCG+AGG - chr3.4:19296997-19297016 None:intergenic 45.0%
GATAGCTATGAATGGGATGC+AGG + chr3.4:19297336-19297355 MS.gene93584:CDS 45.0%
GATATCGTATACAGAGGGCA+AGG + chr3.4:19292579-19292598 MS.gene93584:intron 45.0%
GCACCATCTCTGCAACAAAA+AGG - chr3.4:19297282-19297301 None:intergenic 45.0%
GCCTCCATGGTATCCATTAA+TGG - chr3.4:19293099-19293118 None:intergenic 45.0%
GCTGCAAAAGTTCCTTCTCA+AGG + chr3.4:19297437-19297456 MS.gene93584:CDS 45.0%
GTACGGACAAGCATCAGATT+AGG + chr3.4:19293646-19293665 MS.gene93584:intron 45.0%
GTGACACGATTTGAGAATCG+TGG - chr3.4:19296343-19296362 None:intergenic 45.0%
GTTAATATCCCTGTCGTGTC+CGG + chr3.4:19293765-19293784 MS.gene93584:intron 45.0%
TGGGAGAGGACCAAGTATAT+GGG + chr3.4:19291754-19291773 MS.gene93584:CDS 45.0%
! CAGCCAAAAAGCAGAGTACT+TGG - chr3.4:19297421-19297440 None:intergenic 45.0%
! TATTTAGAGCATCTGGCAGG+TGG - chr3.4:19293128-19293147 None:intergenic 45.0%
!! AGGAGGTAACTTTAGGGTTG+AGG - chr3.4:19296140-19296159 None:intergenic 45.0%
!! GCTCACATTTTGACGCAGTA+TGG - chr3.4:19293596-19293615 None:intergenic 45.0%
!! GGAGGTAACTTTAGGGTTGA+GGG - chr3.4:19296139-19296158 None:intergenic 45.0%
!! GTCATGTTGATATGGGTTGG+TGG - chr3.4:19294447-19294466 None:intergenic 45.0%
!! GTGAAGGTGTCCCATATACT+TGG - chr3.4:19291767-19291786 None:intergenic 45.0%
!!! GTTGGTGAGGGTTTTTTGAG+AGG - chr3.4:19296114-19296133 None:intergenic 45.0%
!! TAGAAAATAATAAATTTAAT+AGG - chr3.4:19292920-19292939 None:intergenic 5.0%
!!! AACTAAATTTTTTATATATA+CGG + chr3.4:19292757-19292776 MS.gene93584:intron 5.0%
!!! TGAATAAAAAATATTTTTTT+AGG - chr3.4:19293450-19293469 None:intergenic 5.0%
AAAATTGGGGACCACAGCAG+TGG + chr3.4:19291952-19291971 MS.gene93584:CDS 50.0%
ACGGATATGGATACGGATGC+CGG - chr3.4:19293787-19293806 None:intergenic 50.0%
CAAGGGAGCAGTCAATCCTA+TGG + chr3.4:19292597-19292616 MS.gene93584:CDS 50.0%
GCAGGCTACACGATACGATT+TGG + chr3.4:19297354-19297373 MS.gene93584:CDS 50.0%
GGTAGAAAATCGTGGCGTGA+TGG - chr3.4:19296286-19296305 None:intergenic 50.0%
GTCAACGTAGCCCGTAAAGA+TGG + chr3.4:19296656-19296675 MS.gene93584:CDS 50.0%
TCACTGTCTGACACTGACAC+AGG + chr3.4:19293692-19293711 MS.gene93584:intron 50.0%
TGCTCAATCGTGTCACGACA+AGG + chr3.4:19296206-19296225 MS.gene93584:intron 50.0%
TGGCTATACGTCTATCCGGA+GGG + chr3.4:19295269-19295288 MS.gene93584:CDS 50.0%
TGTTCGACCGAGAAGTCACT+TGG + chr3.4:19296951-19296970 MS.gene93584:intron 50.0%
TTGTGCAGACGGATCTGAAC+TGG + chr3.4:19295249-19295268 MS.gene93584:intron 50.0%
! TCTTTACGGGCTACGTTGAC+TGG - chr3.4:19296656-19296675 None:intergenic 50.0%
!! ACTTTAGGGTTGAGGGTCGT+TGG - chr3.4:19296132-19296151 None:intergenic 50.0%
!! TGGTGTAGCTATTGGCTCCT+CGG + chr3.4:19294631-19294650 MS.gene93584:CDS 50.0%
AGTGATGTGTGTCCGACACC+AGG - chr3.4:19293677-19293696 None:intergenic 55.0%
ATCAAGAGGGGGAGAGAGAG+AGG - chr3.4:19291923-19291942 None:intergenic 55.0%
CTGGCTATACGTCTATCCGG+AGG + chr3.4:19295268-19295287 MS.gene93584:CDS 55.0%
GATCTCTCTCCCCCCATAGT+AGG - chr3.4:19295907-19295926 None:intergenic 55.0%
GATTAGGCGTGTCCTGGTGT+CGG + chr3.4:19293662-19293681 MS.gene93584:intron 55.0%
GCATCAGATTAGGCGTGTCC+TGG + chr3.4:19293656-19293675 MS.gene93584:intron 55.0%
TCAAGAGGGGGAGAGAGAGA+GGG - chr3.4:19291922-19291941 None:intergenic 55.0%
AGGGTTGAGGGTCGTTGGTG+AGG - chr3.4:19296127-19296146 None:intergenic 60.0%
ATACGGATGCCGGACACGAC+AGG - chr3.4:19293777-19293796 None:intergenic 60.0%
TACGGATGCCGGACACGACA+GGG - chr3.4:19293776-19293795 None:intergenic 60.0%
! GGGTTGAGGGTCGTTGGTGA+GGG - chr3.4:19296126-19296145 None:intergenic 60.0%
!! CAGGTGGAGAAGTGCCTCCA+TGG - chr3.4:19293112-19293131 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 19290737 19297464 19290737 ID=MS.gene93584
chr3.4 mRNA 19290737 19297464 19290737 ID=MS.gene93584.t1;Parent=MS.gene93584
chr3.4 exon 19290737 19290907 19290737 ID=MS.gene93584.t1.exon1;Parent=MS.gene93584.t1
chr3.4 CDS 19290737 19290907 19290737 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19291731 19291800 19291731 ID=MS.gene93584.t1.exon2;Parent=MS.gene93584.t1
chr3.4 CDS 19291731 19291800 19291731 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19291950 19292008 19291950 ID=MS.gene93584.t1.exon3;Parent=MS.gene93584.t1
chr3.4 CDS 19291950 19292008 19291950 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19292146 19292221 19292146 ID=MS.gene93584.t1.exon4;Parent=MS.gene93584.t1
chr3.4 CDS 19292146 19292221 19292146 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19292593 19292664 19292593 ID=MS.gene93584.t1.exon5;Parent=MS.gene93584.t1
chr3.4 CDS 19292593 19292664 19292593 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19293018 19293256 19293018 ID=MS.gene93584.t1.exon6;Parent=MS.gene93584.t1
chr3.4 CDS 19293018 19293256 19293018 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19293898 19294013 19293898 ID=MS.gene93584.t1.exon7;Parent=MS.gene93584.t1
chr3.4 CDS 19293898 19294013 19293898 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19294284 19294498 19294284 ID=MS.gene93584.t1.exon8;Parent=MS.gene93584.t1
chr3.4 CDS 19294284 19294498 19294284 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19294621 19294652 19294621 ID=MS.gene93584.t1.exon9;Parent=MS.gene93584.t1
chr3.4 CDS 19294621 19294652 19294621 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19295257 19295385 19295257 ID=MS.gene93584.t1.exon10;Parent=MS.gene93584.t1
chr3.4 CDS 19295257 19295385 19295257 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19296644 19296732 19296644 ID=MS.gene93584.t1.exon11;Parent=MS.gene93584.t1
chr3.4 CDS 19296644 19296732 19296644 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
chr3.4 exon 19297293 19297464 19297293 ID=MS.gene93584.t1.exon12;Parent=MS.gene93584.t1
chr3.4 CDS 19297293 19297464 19297293 ID=cds.MS.gene93584.t1;Parent=MS.gene93584.t1
Gene Sequence

>MS.gene93584

ATGAAAGCTACGGGTCCTTCCCTCCTCTATCTTTTTTCTCTGGCTACACTTTTTGCTGTTGTCACCGGAACTGCATCACAACATGTGCATCCAAGTCACTATGCTGCTTCATTCAATAGGAGCCTTTTTCCTCCTGATTTTCTCTTTGGAATTGGTTCTTCTGCTTACCAGGTTCATACCACCACATTATTAGCAACAATGCATTCCATTATTGACTTCCCACTAAATTTATTTTGCTTGTTTATACATAGCTCGTCATAAAGGCCACTGTATTTCCGGTGTTTTCGATGTCGTTTTAAATTAACTAGAATGCAAATCATATATTTTCGCAACATTTCTTTTCAAAAAGGACTAAAATAGGTTAACATATTCAGAAATTTTGAAAGTTGCAAAACATTGTTTTGAAAAGAAGTTTTTTAAACAACCTATGCTAATTTTGTAAGTATTGTTAGAATTAATAATACTTTGACATTGTTGTCAGGGACTGTCCCTGAGATTTGAAGTGTTCTATGCAAATATGAATTTACTCATATTTTTTTACATACAAGTATGAATTTTAAGTGAATGCACGACTGCATGTGCATTTACAAATATAAATATATTTAACTTTCAATCAGTAGAGTCCAATGACTTGATGCCTCAAAAAATATGAGGCCGTGTGCGATCAAACCTATTGTAAACATGCTCAAGACCGTCATTGGTTACTGCATATATCGCAATCTATCTTTCAAGATTGTTGTTTGTCACTATGTGTATTGTGTTGGAAACAAGAAATTTAAATCACTATATTTGTCAACATGTGTACCTTGGATTACGATTCTCAGTAGAAAAAAAAGAAGAGGAAATAATTTGTTAATCTAAACCCTAAAATATTGAATTTGAAAGAAAAAAAATGGAGGAAAGTTGGTTAAGGGTTGAGATTAAAGACTTCAAAAAAAAAAATGATAGGAAAAAATTGAGAGCATTCTTTTCCTTGTTTGTGCAAATTTTTCAGGTAGAAGGAGCTTCAAATATAGATGGGAGAGGACCAAGTATATGGGACACCTTCACTAAACAACATCCAGGTTACTCTAATAATTTATTAAATATATTTTTTTTTTATAGATAGATGAAATGATATATTTGTTTATTTGTCCATTGAATATTTGAGCTCAAGGACAAAATTAACAAAAAATAATTTGTCCCTCTCTCTCTCCCCCTCTTGATTGAGCAGAAAAAATTGGGGACCACAGCAGTGGTAATATTGGAGCTGATTTTTATCATCGATACAAGGTACACTTGCTGAAAATTTTCAACCGTTTTTGTCTTTTGAAGAAAATAACTATAATCCATAAATATTTTATTTTACCATAAAAAAATTAATAAATATATTGAACTAGGGAATTAAAAATGCTTGAATTATTTTGTAGAGTGACATAAAGATTATGAAAGAAATTGGTTTGGACTCATACAGATTCTCCATCTCATGGTCAAGAATATTCCCAAGTAAGATAAGAATATTCACAAGTAATATTTAACTTGATTAATAAGGCTACATTCCCTTGTACCAAAAAAAAAGGCTACATTCCCCTAAAAATCGGAGGTTAACACAAAAAAGAAATATTACATGATTTTTTATGGAAAAATATTACAAGATTTTTACGGAAATAGATGAAAACGTCTTTAATTCTTTTGCCACTATATAGATGAAAACGTCTTTAATTCTTTTGCCACTATATGATGGATTAAGAGACGGATTTCTTTTATTTTATTTTTTAAATAAAAAATTTCTTGTCAAATTGTTTTTTTAGTTTAATATTTTAATTTCTTCTAATATGTTTTAAGTGATACTGAGTTTGCAATGATATCGTATACAGAGGGCAAGGGAGCAGTCAATCCTATGGGAGTTAAATTCTACAATAATGTCATTAATGAGGTCCTAGCAAATGGTATAAACCTTATATAGTTACTATTTAAATGATCTATTTTTTAATTATTTTATTTTAAAATTGTTAAAAAAAATCTACAACTTTGCCATGTGAACTAAATTTTTTATATATACGGTGGCAGGCTTATACCCTTCGTAAGACTGTTTCATTGGGATCTTCCACAAGCTCTTGAAGATGAATATAAGGGATTTCTAAGTCCTAAAGTAGTGTAAGCTTAAGTAACACCCTATTGCAAAAATAAAATAAATGTATCCTATTAAATTTATTATTTTCTAAAGAAAACAACAAAAAAGTTAGTAATTGTATATTAACTTATTCTTAATTTAATGAATAAAATAGGAAGGATTTTGAAGCCTATGCAGACTTTTGCTTCAAGACATTTGGAGATAGGGTTAAGCATTGGGTGACACTTAATGAGCCTGTTTCATACACCATTAATGGATACCATGGAGGCACTTCTCCACCTGCCAGATGCTCTAAATATGTTGGAAATTGCTCTACTGGTGACTCAACTACAGAACCCTACATTGTTGCTCATCACTTTATACTTTCTCATGCTGCTGCAGCCAAATTGTATAAGGCCAAATATCAGGTAATATGCTCATAATTTTATCGGTCAAAATTCATATAGTCAATCAAATGCGATGTAGGAGGGTTTCCTTAGTAATTTCATAGTATTTTTATTTTAGCTCAATTTAGTAATTTTCTATTATTTTATTTCAGTTTGTTATTTTTGACCCATTAGGGTTTTGTTATTCCCTATTTAAACTTAACAGTTGTAGCCTAAAAAAATATTTTTTATTCATTCAATAATATTTTAGAGAGTTTTCTCAATTTCTGCTGGATTCCGGAACCCTATTTTCACAAGTTTGTCGCTTGCAAACTTGTTTTTTTCAATCTAGGTTTAGTGCTTGCTAATCATAACCTTCCATACTGCGTCAAAATGTGAGCTAGTCTCGTTCTTTATTTAAAAACTATCAAGTACGGACAAGCATCAGATTAGGCGTGTCCTGGTGTCGGACACACATCACTGTCTGACACTGACACAGGTGATCACACTGAAATATGTGATTTTTTCAAATTATTAACGGAATCGACGTGTTAATATCCCTGTCGTGTCCGGCATCCGTATCCATATCCGTGCTTCATAGTTTCAAAATATGCTCTTAAAAATGTATAGTGTAATTCTTCTGTTTATTATACAATTGATGAATTTTATGTTTGATGTCATAGGCTCGTCAAAAAGGAAAAATTGGAATTACCCTAATTACTCACTACTATGAACCATATTCTAATAGTGTTGCCGATCACAAAGCTGCAAGTAGAGCACTTGACTTTTTATTTGGATGGTATGTATGATCTATTGAAATTTATTTTCTTTTCCTTAATTTAAAAATAAGGCATAAGATTATTATTATTTAAAATGATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTAGTAATGATCATTTTATGAAAACAAACACTGATTACTTGTTTATATGATAAAAAAATTTGGTACACAATTTGATTGAACATAATATTAATTTTTCAGGTTTGCTCATCCAATTACGTATGGTCACTATCCCCAATCAATGATATCATCCTTAGGTAACAGACTCCCAAAATTCACAAAAGAAGAATTTAAAATTATCAAAGGTTCCTATGATTTTCTTGGTGTGAATTATTACACCACGTATTATGCACAAAGCATTCCACCAACCCATATCAACATGACCTACTTCACTGATATGCAAGCAAACCTCATTCGTAAGTATTTATGGAAAAATGTCCAGTAAAATAAGCCATTATATAAAAAAATCGGTTGTATTTTAATTTTTAACATTGAACTAATTAAAAACACAAGCATTAACTTTTTTTCTTGATCACAGCAATGAAGAATGGTGTAGCTATTGGCTCCTCGGTATGATCTTTTATTTTTCTAGCAATTTTTATGTGTTGTTTTTTCTTGACTTCTTTGTTTTTGTTTGGTTTACATATGTACACCAAATTTTTCATGTCATATAGCAATGTTTTTCTTCCATTTGTTTCGAACAAAATCACAAATAAATGCAACCTATGAAGCTACAATAACTATATTATGTTGCGGTTGTGAACATGGTTGAAGATATCTTTTAAATCTCTATTGGTGTGTTAGCTTGCTAAAAAAGACATGACGAGACAATTTCAGTTGTATTTATTTGATTTAAAAACTGTTTAGGATAAGATAAATTAGCACAACAAATAAGACAAAAAGTGAAATTTTTATCTATCACTAAACCACAACACAACTTTTTGTTGTAAGTATAAATTTTTTAAAATATCAAACTAACATTTTGTCCATCAAACATCGTATAAAACAAAAAAATAGTTTATCTTATGTTATTCTGTCTTATGTTGTGTTGTTATGTCAAATACTTACCTTTTAACATATCAACGCTCCTTGTATCATGTAAAGAGAAAAAAATACCATATAATGCTTTGGGCCTTTTGATTCTTAGTGAAGCAAAACTTTATGGCTTGTGCAGACGGATCTGAACTGGCTATACGTCTATCCGGAGGGAATTCATCATCTTGTGACACACATCAAAGATACGTACAAGAATCCACCAGTGTACATTACTGAAAATGGTAATTGTATATGTTTATATAATTTTGTTTTCATTATTTAGTATAGAGAGACCCATATTAGGAAGAAGCAATAAGTCTCCATAAGGAGGATAATTTGGTGAAGATATGTTCATATTCTTGTAGAGTTGCCCATTAGGAAGCTGAGAATCCTATACAATCAATTGATTGAGTAAGAGATTAGCATCATCATCATCCAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGAGATACCCTAATTGACATGCTTACACAACAACAATTCTTAAATTATATTATTTGTTGTGAATTAGGATTCAAAATCACACCAATAAATTTACACGTGTGGAGTAAAAGAAAGTAGTAACCAATATCAAAGTAACCTCGTGCAACAACAACAATATCAAACCTAAATTTAATCTAAGAATCAAGTGTAAAACACAAAACCACAAGCAAAAGATAAATAGAGAAGAGAAACAAACATAGCAAGAAATGTTTACCCAATTCGGTCTAACAATGACCTACTATGGGGGGAGAGAGATCTTTGCTTCACTATCAATGCGTTCTTTATAAAGAGATACAAAAGAGTTACAAGAAATTAGCTTCAACAAGCCCCTCCAAGAACAAACTTAATTTCTACCCATTTTCCAATCTCTTCTCATGAACAATACACTCAATAATTTTCACTCATCCAAGGTGTTTACAAGTGTTGTCCAACTCAAGAAAACCTCTCAAAAAACCCTCACCAACGACCCTCAACCCTAAAGTTACCTCCTTTGATTTTCCAAGTTTCTCTCTCTTGAAGCATGAAGCCTTAAATAATGCTCAATCGTGTCACGACAAGGCTAGTACACAATACAATACTACATCCTTATCTCAAAATTGTGCTACGATTTTTACCATCACGCCACGATTTTCTACCAATAGCTACACCTGCATTCTTCCTAAAAATCGTGCCACGATTCTCAAATCGTGTCACGACTGTCAACTTTCTAAACTTCACAAATTTTTTAGTCAAATTACAACATTATTGAACACACATTAATTAATTAACTCTTAGGGGAAAAGGTTTCATCATCCATAGTTCTAATTTCTTTTTCATTATCCATAGTTCTTAACACTAGCTAGCTAAATGTTTGGACCATAAAAATCCATCTAGCTAACTAAATATTCAATTGAATGAGTGTTTTTTTGTATTGAATGAGTGTTCTAATTAGATTATTTGTTTTGTGAATATATTTCAGGCATTGGTCAATCAAGGACTCAATACCAGTCAACGTAGCCCGTAAAGATGGTATTAGGATCAGATACCATGATAGCCATCTCAAATTCCTCCTTCAAGCAATAAAGTATGAACTAATCAATTTCATTTTTCTTTCAAAGAGTAATAGATTTAAGAGTATGCCCTAGATTTACAAGTTTCCCTAATTCTATTTCACTATATTATTATTACTTTATAATGTTATCTAACAGAATTTCTCAATAATTTCCTCAAAAAAAAAAATCTTAATAAACACCAAAATATTATAAACTCAATTTTTTGTTGGTTAGATTAGTGTAATTAGCATGTTCGACCGAGAAGTCACTTGGTTGAGAGATTCTCTCTTCAACCTCGAGATACTTGGTTTGAGTCACGGAACCTGAGCATGTTCGACAAGATATCCTTGTAGATTAGACTCTTTGAACCTGTTAATTATGAGATCAATTCTCGAGTAGGAAGTAAAATATTAGGGTTTTTCTAATGATCGTTAGACTACCTTTGAAAGGAACGACTCTAAAAATCGAACTCGCATATTTTGTTAGGGGAGAGTCATGCTACCCCTTTAAACTCTTAAATAAACAATAACATTTCATCAATACCTTAGAAAGAATTTATTGATTATGGTAATTTTTGTCCTTTTTGTTGCAGAGATGGTGCAAATGTGAAGGGCTACTATGCATGGTCATTTTCCGATAGCTATGAATGGGATGCAGGCTACACGATACGATTTGGAATAATTTATGTGGATTTCGTTAACAATTTGAAAAGATATCCCAAGTACTCTGCTTTTTGGCTGCAAAAGTTCCTTCTCAAGGGATAA
Protein sequence

>MS.gene93584.t1

MKATGPSLLYLFSLATLFAVVTGTASQHVHPSHYAASFNRSLFPPDFLFGIGSSAYQVEGASNIDGRGPSIWDTFTKQHPEKIGDHSSGNIGADFYHRYKSDIKIMKEIGLDSYRFSISWSRIFPKGKGAVNPMGVKFYNNVINEVLANAYADFCFKTFGDRVKHWVTLNEPVSYTINGYHGGTSPPARCSKYVGNCSTGDSTTEPYIVAHHFILSHAAAAKLYKAKYQARQKGKIGITLITHYYEPYSNSVADHKAASRALDFLFGWFAHPITYGHYPQSMISSLGNRLPKFTKEEFKIIKGSYDFLGVNYYTTYYAQSIPPTHINMTYFTDMQANLIPMKNGVAIGSSTDLNWLYVYPEGIHHLVTHIKDTYKNPPVYITENGNCICLYNFDSIPVNVARKDGIRIRYHDSHLKFLLQAIKDGANVKGYYAWSFSDSYEWDAGYTIRFGIIYVDFVNNLKRYPKYSAFWLQKFLLKG