Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93683.t1 | PNY17342.1 | 85.6 | 222 | 32 | 0 | 1 | 222 | 78 | 299 | 3.30E-109 | 405.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93683.t1 | Q9LSS3 | 53.9 | 219 | 93 | 3 | 1 | 217 | 19 | 231 | 4.5e-59 | 230.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93683.t1 | A0A2K3PPX2 | 85.6 | 222 | 32 | 0 | 1 | 222 | 78 | 299 | 2.4e-109 | 405.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052863 | MS.gene93683 | 0.80013 | 1.66E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene93683 | 0.808138 | 3.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93683.t1 | MTR_7g092500 | 86.036 | 222 | 29 | 1 | 1 | 220 | 25 | 246 | 1.62e-137 | 396 |
| MS.gene93683.t1 | MTR_7g092500 | 85.204 | 196 | 26 | 2 | 297 | 489 | 51 | 246 | 6.75e-118 | 346 |
| MS.gene93683.t1 | MTR_0262s0030 | 90.000 | 160 | 16 | 0 | 1 | 160 | 25 | 184 | 9.09e-103 | 305 |
| MS.gene93683.t1 | MTR_0262s0030 | 91.111 | 135 | 11 | 1 | 297 | 430 | 51 | 185 | 5.24e-83 | 254 |
| MS.gene93683.t1 | MTR_5g031400 | 52.695 | 167 | 41 | 3 | 54 | 220 | 29 | 157 | 4.75e-46 | 158 |
| MS.gene93683.t1 | MTR_5g031400 | 58.219 | 146 | 24 | 3 | 345 | 489 | 48 | 157 | 1.70e-42 | 148 |
| MS.gene93683.t1 | MTR_4g119190 | 70.833 | 48 | 13 | 1 | 325 | 371 | 19 | 66 | 2.82e-14 | 67.8 |
| MS.gene93683.t1 | MTR_4g119190 | 66.667 | 48 | 16 | 0 | 55 | 102 | 19 | 66 | 2.62e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93683.t1 | AT5G60230 | 53.881 | 219 | 93 | 3 | 1 | 217 | 19 | 231 | 3.69e-70 | 224 |
| MS.gene93683.t1 | AT5G60230 | 57.068 | 191 | 75 | 2 | 298 | 486 | 46 | 231 | 1.34e-65 | 212 |
| MS.gene93683.t1 | AT5G60230 | 53.881 | 219 | 93 | 3 | 1 | 217 | 24 | 236 | 3.84e-70 | 224 |
| MS.gene93683.t1 | AT5G60230 | 57.068 | 191 | 75 | 2 | 298 | 486 | 51 | 236 | 1.45e-65 | 212 |
| MS.gene93683.t1 | AT3G45590 | 52.727 | 220 | 95 | 4 | 1 | 217 | 19 | 232 | 1.69e-69 | 222 |
| MS.gene93683.t1 | AT3G45590 | 54.974 | 191 | 80 | 2 | 298 | 486 | 46 | 232 | 5.77e-62 | 202 |
| MS.gene93683.t1 | AT3G45590 | 52.727 | 220 | 95 | 4 | 1 | 217 | 19 | 232 | 1.69e-69 | 222 |
| MS.gene93683.t1 | AT3G45590 | 54.974 | 191 | 80 | 2 | 298 | 486 | 46 | 232 | 5.77e-62 | 202 |
| MS.gene93683.t1 | AT3G45577 | 48.193 | 83 | 43 | 0 | 302 | 384 | 36 | 118 | 3.56e-17 | 77.8 |
| MS.gene93683.t1 | AT3G45577 | 47.423 | 97 | 47 | 2 | 19 | 115 | 26 | 118 | 5.30e-17 | 77.4 |
Find 100 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAACTCTTCATCATTTA+AGG | 0.063723 | 7.1:+34394196 | None:intergenic |
| ACGCCACAACTCTTCATTTA+AGG | 0.137177 | 7.1:+34392249 | None:intergenic |
| GGCAGAGGTTTCACAAATTT+AGG | 0.191867 | 7.1:+34393729 | None:intergenic |
| TTGAAATGCCTCAAGATTAA+TGG | 0.229021 | 7.1:-34394236 | MS.gene93683:CDS |
| ACAAGGGAATGTTTCTTTCT+TGG | 0.237646 | 7.1:+34394160 | None:intergenic |
| GTTAACGTACAAACCTAATA+AGG | 0.279589 | 7.1:+34393914 | None:intergenic |
| CATTGCACAACTCGACTTCT+TGG | 0.283326 | 7.1:-34393951 | MS.gene93683:CDS |
| GAATAAGCCTTGTAGAAATA+AGG | 0.297148 | 7.1:+34392199 | None:intergenic |
| CTTTGCACAACTCGACTTCT+TGG | 0.298633 | 7.1:-34392007 | MS.gene93683:CDS |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.1:-34392097 | MS.gene93683:CDS |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.1:-34394041 | MS.gene93683:CDS |
| ATAAGGGAATGCTTCTTTCT+TGG | 0.327789 | 7.1:+34392216 | None:intergenic |
| CGCCACAACTCTTCATTTAA+GGG | 0.336160 | 7.1:+34392250 | None:intergenic |
| GCAGAGGTTTCACAAATTTA+GGG | 0.341754 | 7.1:+34393730 | None:intergenic |
| TAAGGGAATGCTTCTTTCTT+GGG | 0.350469 | 7.1:+34392217 | None:intergenic |
| TAAATAGAAGATTGAGAGTA+TGG | 0.364355 | 7.1:-34392039 | MS.gene93683:CDS |
| CACAACTCTTCATCATTTAA+GGG | 0.377780 | 7.1:+34394197 | None:intergenic |
| GATCTCTCACGACATTGTTC+TGG | 0.391643 | 7.1:+34393813 | None:intergenic |
| CCGGTGGAAGCATCTTCAAC+AGG | 0.398597 | 7.1:-34393693 | MS.gene93683:CDS |
| ATTAATCTTGAGGCATTTCA+AGG | 0.418645 | 7.1:+34394238 | None:intergenic |
| GTGAAGTCAGGGGCTCAGTA+TGG | 0.424296 | 7.1:-34394095 | MS.gene93683:CDS |
| GGCATTTCAAGGAATAAGAT+AGG | 0.428509 | 7.1:+34394249 | None:intergenic |
| AATAAGCCTTGTAGAAATAA+GGG | 0.428978 | 7.1:+34392200 | None:intergenic |
| TTGCTTAATAAAGCGTGCTT+TGG | 0.429218 | 7.1:-34392391 | MS.gene93683:CDS |
| GTGAGGTCAGGGTCTCAGTA+TGG | 0.430753 | 7.1:-34392151 | MS.gene93683:CDS |
| ATTAATGACGGTGCTGATAC+TGG | 0.437232 | 7.1:-34392274 | MS.gene93683:CDS |
| ACATCCATCTCTCACATTCC+CGG | 0.443650 | 7.1:-34393570 | MS.gene93683:intron |
| GTTAACGTACAAAACTAGTA+AGG | 0.444033 | 7.1:+34391970 | None:intergenic |
| AAAGACTGGGTAGTGAAGTC+AGG | 0.444328 | 7.1:-34394107 | MS.gene93683:CDS |
| CCATTGCTCTAGACTCCATC+TGG | 0.449795 | 7.1:+34391880 | None:intergenic |
| GGGAAACGCCTGGGCGGACC+TGG | 0.454449 | 7.1:+34393750 | None:intergenic |
| TTGCTTGATAAAGCATGCTT+TGG | 0.455248 | 7.1:-34394338 | MS.gene93683:CDS |
| TCCACCGGTTGTTGTGAAAA+CGG | 0.462862 | 7.1:+34393708 | None:intergenic |
| AAGTACGCACAATCTCTAGA+TGG | 0.473667 | 7.1:-34393839 | MS.gene93683:CDS |
| AACATTCCCTTGTTTCTACA+AGG | 0.481450 | 7.1:-34394150 | MS.gene93683:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.1:-34392119 | MS.gene93683:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.1:-34394063 | MS.gene93683:CDS |
| CATCTTCAACAGGGGAGAGC+GGG | 0.487039 | 7.1:-34393683 | MS.gene93683:CDS |
| GCTACTTTGCTTAGTGGCGG+CGG | 0.487147 | 7.1:-34393630 | MS.gene93683:CDS |
| TAGATGGAAGATTGAGAGAA+TGG | 0.490141 | 7.1:-34393983 | MS.gene93683:CDS |
| CTCAGTGATATTGTGAGTCC+AGG | 0.493900 | 7.1:-34393768 | MS.gene93683:CDS |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.1:+34392107 | None:intergenic |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.1:+34394051 | None:intergenic |
| GACAATGATGGTGATCTAGA+TGG | 0.497076 | 7.1:-34393999 | MS.gene93683:CDS |
| TAGTTGACAAGGATATGTAT+TGG | 0.499569 | 7.1:-34392354 | MS.gene93683:CDS |
| TAGTTGACAAGGATATGTAT+TGG | 0.499569 | 7.1:-34394301 | MS.gene93683:CDS |
| AGCATTCCCTTATTTCTACA+AGG | 0.509569 | 7.1:-34392206 | MS.gene93683:CDS |
| GGCGGAGATAGAACTATCAT+TGG | 0.511446 | 7.1:-34393612 | MS.gene93683:CDS |
| CAACAGGGGAGAGCGGGAAA+AGG | 0.513805 | 7.1:-34393677 | MS.gene93683:CDS |
| CAATAAGCCTTGTAGAAACA+AGG | 0.516266 | 7.1:+34394143 | None:intergenic |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.1:-34392113 | MS.gene93683:CDS |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.1:-34394057 | MS.gene93683:CDS |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.1:+34392100 | None:intergenic |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.1:+34394044 | None:intergenic |
| GGAGATTGTGCGTTCTTCGA+TGG | 0.526909 | 7.1:+34391901 | None:intergenic |
| CACAAATTTAGGGAAACGCC+TGG | 0.532019 | 7.1:+34393740 | None:intergenic |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.1:-34392114 | MS.gene93683:CDS |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.1:-34394058 | MS.gene93683:CDS |
| TGTGATACAATCTTTGACAT+GGG | 0.538484 | 7.1:+34394449 | None:intergenic |
| CCTGTTGAAGATGCTTCCAC+CGG | 0.541455 | 7.1:+34393693 | None:intergenic |
| GTATAGTTTGTCAAACATAA+CGG | 0.545435 | 7.1:+34393867 | None:intergenic |
| TTGTGATACAATCTTTGACA+TGG | 0.553740 | 7.1:+34394448 | None:intergenic |
| TTGTGAGTCCAGGTCCGCCC+AGG | 0.554269 | 7.1:-34393758 | MS.gene93683:CDS |
| GGTTGTTGTGAAAACGGCAG+AGG | 0.554825 | 7.1:+34393714 | None:intergenic |
| TTAGTTCAATCAAATACTTG+TGG | 0.557545 | 7.1:-34394413 | MS.gene93683:CDS |
| TAGATAGAATGCTTCCTCCA+TGG | 0.562337 | 7.1:+34392321 | None:intergenic |
| TCCTTGTCAACTATCCTCAC+AGG | 0.567073 | 7.1:+34392364 | None:intergenic |
| TCCTTGTCAACTATCCTCAC+AGG | 0.567073 | 7.1:+34394311 | None:intergenic |
| CAGCACCGTCATTAATCTTG+AGG | 0.574856 | 7.1:+34392281 | None:intergenic |
| AAGACTGGGTAGTGAAGTCA+GGG | 0.585343 | 7.1:-34394106 | MS.gene93683:CDS |
| CGGTGGAAGCATCTTCAACA+GGG | 0.588422 | 7.1:-34393692 | MS.gene93683:CDS |
| GTATTGGTTTCAATTAACCA+TGG | 0.594762 | 7.1:-34392338 | MS.gene93683:CDS |
| TAGGTAGAATGCTTCCTCCT+CGG | 0.598837 | 7.1:+34394268 | None:intergenic |
| AAAACTGGGTAGTGAGGTCA+GGG | 0.603360 | 7.1:-34392162 | MS.gene93683:CDS |
| GAGCACCTCCATTAATCTTG+AGG | 0.609670 | 7.1:+34394228 | None:intergenic |
| CCAGATGGAGTCTAGAGCAA+TGG | 0.613679 | 7.1:-34391880 | MS.gene93683:CDS |
| GCATCTTCAACAGGGGAGAG+CGG | 0.616909 | 7.1:-34393684 | MS.gene93683:CDS |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.1:-34392067 | MS.gene93683:CDS |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.1:-34394011 | MS.gene93683:CDS |
| ACCTGTGAGGATAGTTGACA+AGG | 0.621958 | 7.1:-34394312 | MS.gene93683:CDS |
| GGGAAAAGGAAAGAAGCTAA+AGG | 0.622115 | 7.1:-34393663 | MS.gene93683:CDS |
| GGGGCTACTTTGCTTAGTGG+CGG | 0.630831 | 7.1:-34393633 | MS.gene93683:CDS |
| AAATGCCTCAAGATTAATGA+CGG | 0.637181 | 7.1:-34392286 | MS.gene93683:CDS |
| GTCCCTTAAATGAAGAGTTG+TGG | 0.637860 | 7.1:-34392252 | MS.gene93683:CDS |
| ACAAATTTAGGGAAACGCCT+GGG | 0.638181 | 7.1:+34393741 | None:intergenic |
| AATAAGCCTTGTAGAAACAA+GGG | 0.638392 | 7.1:+34394144 | None:intergenic |
| ACCTGTGAGGATAGTTGACA+AGG | 0.642072 | 7.1:-34392365 | MS.gene93683:CDS |
| TTGGTTTCAGTTAACCGAGG+AGG | 0.658202 | 7.1:-34394282 | MS.gene93683:CDS |
| CGTGCTTTGGTCGACCTGTG+AGG | 0.662108 | 7.1:-34392378 | MS.gene93683:CDS |
| AAGAACGCACAATCTCCAGA+TGG | 0.663409 | 7.1:-34391895 | MS.gene93683:CDS |
| TGTACCGGGAATGTGAGAGA+TGG | 0.664950 | 7.1:+34393566 | None:intergenic |
| AAATGCCTCAAGATTAATGG+AGG | 0.668756 | 7.1:-34394233 | MS.gene93683:CDS |
| GGTGGAAGCATCTTCAACAG+GGG | 0.674391 | 7.1:-34393691 | MS.gene93683:CDS |
| CATGCTTTGGTCAACCTGTG+AGG | 0.682966 | 7.1:-34394325 | MS.gene93683:CDS |
| GTATTGGTTTCAGTTAACCG+AGG | 0.685014 | 7.1:-34394285 | MS.gene93683:CDS |
| TTGGTTTCAATTAACCATGG+AGG | 0.690068 | 7.1:-34392335 | MS.gene93683:CDS |
| CCTTAAATGATGAAGAGTTG+TGG | 0.708210 | 7.1:-34394196 | MS.gene93683:CDS |
| AATTTAGGGAAACGCCTGGG+CGG | 0.729710 | 7.1:+34393744 | None:intergenic |
| CTGGACTCACAATATCACTG+AGG | 0.781656 | 7.1:+34393769 | None:intergenic |
| AGACTGGGTAGTGAAGTCAG+GGG | 0.803024 | 7.1:-34394105 | MS.gene93683:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACTTATATTTAATGAAA+CGG | + | chr7.1:34393275-34393294 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTGTTTTTTTA+AGG | - | chr7.1:34393228-34393247 | MS.gene93683:intron | 10.0% |
| !! | ATATACCCTTAATATATAAA+AGG | + | chr7.1:34393531-34393550 | None:intergenic | 15.0% |
| !! | TTTATAAAAGTTGAGTTATA+TGG | + | chr7.1:34393192-34393211 | None:intergenic | 15.0% |
| !!! | ATTGTTTGACTTTTTTTATA+AGG | - | chr7.1:34393710-34393729 | MS.gene93683:CDS | 15.0% |
| !!! | TATCTCCTTTTATATATTAA+GGG | - | chr7.1:34393523-34393542 | MS.gene93683:intron | 15.0% |
| !!! | TTATCTCCTTTTATATATTA+AGG | - | chr7.1:34393522-34393541 | MS.gene93683:intron | 15.0% |
| !! | AAAAGATGCAAAATCAAAAA+AGG | - | chr7.1:34393757-34393776 | MS.gene93683:CDS | 20.0% |
| !! | AGCCAAATAATATATTAATG+CGG | + | chr7.1:34393066-34393085 | None:intergenic | 20.0% |
| !! | ATACTTCTAATACAAATAGA+TGG | + | chr7.1:34392793-34392812 | None:intergenic | 20.0% |
| !! | TACCGCATTAATATATTATT+TGG | - | chr7.1:34393061-34393080 | MS.gene93683:intron | 20.0% |
| !!! | AAGTTTTTTTTTTCCTTTTG+GGG | + | chr7.1:34393013-34393032 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTATAAGGTCAAA+TGG | - | chr7.1:34393718-34393737 | MS.gene93683:CDS | 20.0% |
| !!! | CAAGTTTTTTTTTTCCTTTT+GGG | + | chr7.1:34393014-34393033 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTCTTTCAAATTT+TGG | - | chr7.1:34393496-34393515 | MS.gene93683:intron | 20.0% |
| !!! | TCAAGTTTTTTTTTTCCTTT+TGG | + | chr7.1:34393015-34393034 | None:intergenic | 20.0% |
| ! | AAAGAAGCTAAAGGAAAAAA+GGG | - | chr7.1:34392654-34392673 | MS.gene93683:intron | 25.0% |
| ! | GAAGTCAAATTTATCCATAA+TGG | + | chr7.1:34393161-34393180 | None:intergenic | 25.0% |
| ! | GATTGAGCTTTACTAAATAA+AGG | - | chr7.1:34393670-34393689 | MS.gene93683:CDS | 25.0% |
| ! | TAAATAGAAGATTGAGAGTA+TGG | - | chr7.1:34394269-34394288 | MS.gene93683:CDS | 25.0% |
| ! | TTAATCATAAACATAGACAG+CGG | + | chr7.1:34393412-34393431 | None:intergenic | 25.0% |
| ! | TTAGTTCAATCAAATACTTG+TGG | - | chr7.1:34391895-34391914 | MS.gene93683:CDS | 25.0% |
| ! | TTCTTCTTCTTCTTTATGTT+TGG | - | chr7.1:34393358-34393377 | MS.gene93683:intron | 25.0% |
| ! | TTTGAACCAACAAAATTGTT+TGG | + | chr7.1:34393092-34393111 | None:intergenic | 25.0% |
| !! | AATAAGCCTTGTAGAAATAA+GGG | + | chr7.1:34394111-34394130 | None:intergenic | 25.0% |
| !! | ATTTAGTTTAGTGTCCATTA+TGG | - | chr7.1:34393144-34393163 | MS.gene93683:intron | 25.0% |
| !! | GTATAGTTTGTCAAACATAA+CGG | + | chr7.1:34392444-34392463 | None:intergenic | 25.0% |
| !! | GTTTTGTACGTTAACAAAAA+TGG | - | chr7.1:34394346-34394365 | MS.gene93683:CDS | 25.0% |
| !!! | GCACAATTTTTTTGTCAATA+CGG | + | chr7.1:34392520-34392539 | None:intergenic | 25.0% |
| AAATGCCTCAAGATTAATGA+CGG | - | chr7.1:34394022-34394041 | MS.gene93683:CDS | 30.0% | |
| AAGAAGCTAAAGGAAAAAAG+GGG | - | chr7.1:34392655-34392674 | MS.gene93683:intron | 30.0% | |
| AGAAAAAGAGAAGATTGTAC+CGG | + | chr7.1:34392760-34392779 | None:intergenic | 30.0% | |
| AGGTCAAATTATGAAGAGTA+TGG | + | chr7.1:34392891-34392910 | None:intergenic | 30.0% | |
| AGTGTTGCAAAAACCTTATT+AGG | - | chr7.1:34392381-34392400 | MS.gene93683:CDS | 30.0% | |
| ATTCAATTGTTTCGCTCTTA+TGG | - | chr7.1:34393432-34393451 | MS.gene93683:intron | 30.0% | |
| CACAACTCTTCATCATTTAA+GGG | + | chr7.1:34392114-34392133 | None:intergenic | 30.0% | |
| CCAAATTAATCAAGACACAA+AGG | + | chr7.1:34393623-34393642 | None:intergenic | 30.0% | |
| CCTTTGTGTCTTGATTAATT+TGG | - | chr7.1:34393620-34393639 | MS.gene93683:CDS | 30.0% | |
| GAAACAAAACAGAGAAAAGT+TGG | + | chr7.1:34393486-34393505 | None:intergenic | 30.0% | |
| GAAAGAAGCTAAAGGAAAAA+AGG | - | chr7.1:34392653-34392672 | MS.gene93683:intron | 30.0% | |
| GGTTTGTACGTTAACAAAAA+TGG | - | chr7.1:34392402-34392421 | MS.gene93683:CDS | 30.0% | |
| GTTAACGTACAAAACTAGTA+AGG | + | chr7.1:34394341-34394360 | None:intergenic | 30.0% | |
| GTTAACGTACAAACCTAATA+AGG | + | chr7.1:34392397-34392416 | None:intergenic | 30.0% | |
| TAGTTGACAAGGATATGTAT+TGG | - | chr7.1:34392007-34392026 | MS.gene93683:CDS | 30.0% | |
| TGAGCTTTACTAAATAAAGG+TGG | - | chr7.1:34393673-34393692 | MS.gene93683:CDS | 30.0% | |
| TGTGATACAATCTTTGACAT+GGG | + | chr7.1:34391862-34391881 | None:intergenic | 30.0% | |
| TTGAAATGCCTCAAGATTAA+TGG | - | chr7.1:34392072-34392091 | MS.gene93683:CDS | 30.0% | |
| TTGTGATACAATCTTTGACA+TGG | + | chr7.1:34391863-34391882 | None:intergenic | 30.0% | |
| ! | AAGCTATCACAATTTTTACG+AGG | + | chr7.1:34393387-34393406 | None:intergenic | 30.0% |
| ! | AATAAGCCTTGTAGAAACAA+GGG | + | chr7.1:34392167-34392186 | None:intergenic | 30.0% |
| ! | AGCTATCACAATTTTTACGA+GGG | + | chr7.1:34393386-34393405 | None:intergenic | 30.0% |
| ! | ATTAATCTTGAGGCATTTCA+AGG | + | chr7.1:34392073-34392092 | None:intergenic | 30.0% |
| ! | GAATAAGCCTTGTAGAAATA+AGG | + | chr7.1:34394112-34394131 | None:intergenic | 30.0% |
| ! | TCATTTTCGAATGAAAGACT+GGG | - | chr7.1:34392188-34392207 | MS.gene93683:CDS | 30.0% |
| ! | TTACTAAATAAAGGTGGACT+TGG | - | chr7.1:34393679-34393698 | MS.gene93683:CDS | 30.0% |
| !! | CTCATTTTTGTCTATGTTCA+GGG | - | chr7.1:34392951-34392970 | MS.gene93683:intron | 30.0% |
| !! | GTATTGGTTTCAATTAACCA+TGG | - | chr7.1:34393970-34393989 | MS.gene93683:CDS | 30.0% |
| !! | TCATTTTTGTCTATGTTCAG+GGG | - | chr7.1:34392952-34392971 | MS.gene93683:intron | 30.0% |
| !! | TCTCATTTTTGTCTATGTTC+AGG | - | chr7.1:34392950-34392969 | MS.gene93683:intron | 30.0% |
| AAATGCCTCAAGATTAATGG+AGG | - | chr7.1:34392075-34392094 | MS.gene93683:CDS | 35.0% | |
| AATGTCTCTAATCAGTGATC+AGG | + | chr7.1:34392911-34392930 | None:intergenic | 35.0% | |
| ACAAGGGAATGTTTCTTTCT+TGG | + | chr7.1:34392151-34392170 | None:intergenic | 35.0% | |
| AGAAGCTAAAGGAAAAAAGG+GGG | - | chr7.1:34392656-34392675 | MS.gene93683:intron | 35.0% | |
| ATAAGGGAATGCTTCTTTCT+TGG | + | chr7.1:34394095-34394114 | None:intergenic | 35.0% | |
| ATCAAACACTTTACGTGCAA+AGG | + | chr7.1:34392821-34392840 | None:intergenic | 35.0% | |
| CAAAGGCCACATAAGAATTA+CGG | + | chr7.1:34393606-34393625 | None:intergenic | 35.0% | |
| CCACAACTCTTCATCATTTA+AGG | + | chr7.1:34392115-34392134 | None:intergenic | 35.0% | |
| CCACATAAGAATTACGGATT+AGG | + | chr7.1:34393600-34393619 | None:intergenic | 35.0% | |
| CCTAATCCGTAATTCTTATG+TGG | - | chr7.1:34393597-34393616 | MS.gene93683:CDS | 35.0% | |
| CCTTAAATGATGAAGAGTTG+TGG | - | chr7.1:34392112-34392131 | MS.gene93683:CDS | 35.0% | |
| GAAAAAGAGAAGATTGTACC+GGG | + | chr7.1:34392759-34392778 | None:intergenic | 35.0% | |
| GCAGAGGTTTCACAAATTTA+GGG | + | chr7.1:34392581-34392600 | None:intergenic | 35.0% | |
| GGCATTTCAAGGAATAAGAT+AGG | + | chr7.1:34392062-34392081 | None:intergenic | 35.0% | |
| GTTCTATCACATGACAATGA+TGG | - | chr7.1:34392297-34392316 | MS.gene93683:CDS | 35.0% | |
| TAAGGGAATGCTTCTTTCTT+GGG | + | chr7.1:34394094-34394113 | None:intergenic | 35.0% | |
| TAGATGGAAGATTGAGAGAA+TGG | - | chr7.1:34392325-34392344 | MS.gene93683:CDS | 35.0% | |
| TATTGTTTATCGCCATCATC+CGG | - | chr7.1:34392245-34392264 | MS.gene93683:CDS | 35.0% | |
| TCACCTTCGAATGAAAAACT+GGG | - | chr7.1:34394132-34394151 | MS.gene93683:CDS | 35.0% | |
| TTGCTTAATAAAGCGTGCTT+TGG | - | chr7.1:34393917-34393936 | MS.gene93683:CDS | 35.0% | |
| TTGCTTGATAAAGCATGCTT+TGG | - | chr7.1:34391970-34391989 | MS.gene93683:CDS | 35.0% | |
| TTGGTTTCAATTAACCATGG+AGG | - | chr7.1:34393973-34393992 | MS.gene93683:CDS | 35.0% | |
| ! | AACAGAGAAAAGTTGGTTGA+TGG | + | chr7.1:34393479-34393498 | None:intergenic | 35.0% |
| ! | CAATAAGCCTTGTAGAAACA+AGG | + | chr7.1:34392168-34392187 | None:intergenic | 35.0% |
| ! | CTATCACAATTTTTACGAGG+GGG | + | chr7.1:34393384-34393403 | None:intergenic | 35.0% |
| ! | GCTACTCCAAACAATTTTGT+TGG | - | chr7.1:34393083-34393102 | MS.gene93683:intron | 35.0% |
| ! | GCTATCACAATTTTTACGAG+GGG | + | chr7.1:34393385-34393404 | None:intergenic | 35.0% |
| !! | AACATTCCCTTGTTTCTACA+AGG | - | chr7.1:34392158-34392177 | MS.gene93683:CDS | 35.0% |
| !! | AGCATTCCCTTATTTCTACA+AGG | - | chr7.1:34394102-34394121 | MS.gene93683:CDS | 35.0% |
| !! | GTCATTTTCGAATGAAAGAC+TGG | - | chr7.1:34392187-34392206 | MS.gene93683:CDS | 35.0% |
| AAGTACGCACAATCTCTAGA+TGG | - | chr7.1:34392469-34392488 | MS.gene93683:intron | 40.0% | |
| ACAAATTTAGGGAAACGCCT+GGG | + | chr7.1:34392570-34392589 | None:intergenic | 40.0% | |
| ACGCCACAACTCTTCATTTA+AGG | + | chr7.1:34394062-34394081 | None:intergenic | 40.0% | |
| AGCTCAATCAAAATAGCCAC+AGG | + | chr7.1:34393659-34393678 | None:intergenic | 40.0% | |
| CGAATGGTTGTATAGTCATG+GGG | - | chr7.1:34392975-34392994 | MS.gene93683:intron | 40.0% | |
| CGCCACAACTCTTCATTTAA+GGG | + | chr7.1:34394061-34394080 | None:intergenic | 40.0% | |
| CTCACCTTCGAATGAAAAAC+TGG | - | chr7.1:34394131-34394150 | MS.gene93683:CDS | 40.0% | |
| CTCGTGTTGAAAAAAGCTTG+AGG | + | chr7.1:34393572-34393591 | None:intergenic | 40.0% | |
| GAATGAAAAACTGGGTAGTG+AGG | - | chr7.1:34394140-34394159 | MS.gene93683:CDS | 40.0% | |
| GCGAATGGTTGTATAGTCAT+GGG | - | chr7.1:34392974-34392993 | MS.gene93683:intron | 40.0% | |
| GGCAGAGGTTTCACAAATTT+AGG | + | chr7.1:34392582-34392601 | None:intergenic | 40.0% | |
| GGGAAAAGGAAAGAAGCTAA+AGG | - | chr7.1:34392645-34392664 | MS.gene93683:intron | 40.0% | |
| GTCCCTTAAATGAAGAGTTG+TGG | - | chr7.1:34394056-34394075 | MS.gene93683:CDS | 40.0% | |
| TAGATAGAATGCTTCCTCCA+TGG | + | chr7.1:34393990-34394009 | None:intergenic | 40.0% | |
| ! | CTACCCAGTTTTTCATTCGA+AGG | + | chr7.1:34394138-34394157 | None:intergenic | 40.0% |
| ! | GACAATGATGGTGATCTAGA+TGG | - | chr7.1:34392309-34392328 | MS.gene93683:CDS | 40.0% |
| ! | GCATCTTTTCCTTTCCATCT+TGG | + | chr7.1:34393746-34393765 | None:intergenic | 40.0% |
| ! | TTGATGGTTGACACTGAAAC+TGG | + | chr7.1:34393463-34393482 | None:intergenic | 40.0% |
| !! | ATTAATGACGGTGCTGATAC+TGG | - | chr7.1:34394034-34394053 | MS.gene93683:CDS | 40.0% |
| !! | GTATTGGTTTCAGTTAACCG+AGG | - | chr7.1:34392023-34392042 | MS.gene93683:CDS | 40.0% |
| !! | TGGATCATTTTAGTAGCCTG+TGG | - | chr7.1:34393640-34393659 | MS.gene93683:CDS | 40.0% |
| !!! | CAAGCTTTTTTCAACACGAG+AGG | - | chr7.1:34393572-34393591 | MS.gene93683:CDS | 40.0% |
| AAAAACTGGGTAGTGAGGTC+AGG | - | chr7.1:34394145-34394164 | MS.gene93683:CDS | 45.0% | |
| AAAACTGGGTAGTGAGGTCA+GGG | - | chr7.1:34394146-34394165 | MS.gene93683:CDS | 45.0% | |
| AAAGACTGGGTAGTGAAGTC+AGG | - | chr7.1:34392201-34392220 | MS.gene93683:CDS | 45.0% | |
| AAGAACGCACAATCTCCAGA+TGG | - | chr7.1:34394413-34394432 | MS.gene93683:CDS | 45.0% | |
| AAGACTGGGTAGTGAAGTCA+GGG | - | chr7.1:34392202-34392221 | MS.gene93683:CDS | 45.0% | |
| AAGGTCAAATGGCACCAAGA+TGG | - | chr7.1:34393729-34393748 | MS.gene93683:CDS | 45.0% | |
| ACATCCATCTCTCACATTCC+CGG | - | chr7.1:34392738-34392757 | MS.gene93683:intron | 45.0% | |
| ACCTGTGAGGATAGTTGACA+AGG | - | chr7.1:34391996-34392015 | MS.gene93683:CDS | 45.0% | |
| CAAATGGCACCAAGATGGAA+AGG | - | chr7.1:34393734-34393753 | MS.gene93683:CDS | 45.0% | |
| CACAAATTTAGGGAAACGCC+TGG | + | chr7.1:34392571-34392590 | None:intergenic | 45.0% | |
| CAGCACCGTCATTAATCTTG+AGG | + | chr7.1:34394030-34394049 | None:intergenic | 45.0% | |
| CATTGCACAACTCGACTTCT+TGG | - | chr7.1:34392357-34392376 | MS.gene93683:CDS | 45.0% | |
| CTCAGTGATATTGTGAGTCC+AGG | - | chr7.1:34392540-34392559 | MS.gene93683:intron | 45.0% | |
| CTGGACTCACAATATCACTG+AGG | + | chr7.1:34392542-34392561 | None:intergenic | 45.0% | |
| CTTTGCACAACTCGACTTCT+TGG | - | chr7.1:34394301-34394320 | MS.gene93683:CDS | 45.0% | |
| GAGCACCTCCATTAATCTTG+AGG | + | chr7.1:34392083-34392102 | None:intergenic | 45.0% | |
| GATCTCTCACGACATTGTTC+TGG | + | chr7.1:34392498-34392517 | None:intergenic | 45.0% | |
| GGCGAATGGTTGTATAGTCA+TGG | - | chr7.1:34392973-34392992 | MS.gene93683:intron | 45.0% | |
| GGCGGAGATAGAACTATCAT+TGG | - | chr7.1:34392696-34392715 | MS.gene93683:intron | 45.0% | |
| GTATAGTCATGGGGTAGCAT+TGG | - | chr7.1:34392984-34393003 | MS.gene93683:intron | 45.0% | |
| TAGGTAGAATGCTTCCTCCT+CGG | + | chr7.1:34392043-34392062 | None:intergenic | 45.0% | |
| TCCTTGTCAACTATCCTCAC+AGG | + | chr7.1:34392000-34392019 | None:intergenic | 45.0% | |
| TTGGTTTCAGTTAACCGAGG+AGG | - | chr7.1:34392026-34392045 | MS.gene93683:CDS | 45.0% | |
| ! | TCCACCGGTTGTTGTGAAAA+CGG | + | chr7.1:34392603-34392622 | None:intergenic | 45.0% |
| !!! | TCTGCCGTTTTCACAACAAC+CGG | - | chr7.1:34392596-34392615 | MS.gene93683:intron | 45.0% |
| AATTTAGGGAAACGCCTGGG+CGG | + | chr7.1:34392567-34392586 | None:intergenic | 50.0% | |
| AGACTGGGTAGTGAAGTCAG+GGG | - | chr7.1:34392203-34392222 | MS.gene93683:CDS | 50.0% | |
| CATGCTTTGGTCAACCTGTG+AGG | - | chr7.1:34391983-34392002 | MS.gene93683:CDS | 50.0% | |
| CCTGTTGAAGATGCTTCCAC+CGG | + | chr7.1:34392618-34392637 | None:intergenic | 50.0% | |
| GGAGATTGTGCGTTCTTCGA+TGG | + | chr7.1:34394410-34394429 | None:intergenic | 50.0% | |
| GGTTGTTGTGAAAACGGCAG+AGG | + | chr7.1:34392597-34392616 | None:intergenic | 50.0% | |
| TGTACCGGGAATGTGAGAGA+TGG | + | chr7.1:34392745-34392764 | None:intergenic | 50.0% | |
| TGTCTATGTTCAGGGGCGAA+TGG | - | chr7.1:34392959-34392978 | MS.gene93683:intron | 50.0% | |
| TTTATCGCCATCATCCGGCT+CGG | - | chr7.1:34392250-34392269 | MS.gene93683:CDS | 50.0% | |
| ! | AAGGGGGCTACTTTGCTTAG+TGG | - | chr7.1:34392672-34392691 | MS.gene93683:intron | 50.0% |
| ! | CCAGATGGAGTCTAGAGCAA+TGG | - | chr7.1:34394428-34394447 | MS.gene93683:CDS | 50.0% |
| ! | CCATTGCTCTAGACTCCATC+TGG | + | chr7.1:34394431-34394450 | None:intergenic | 50.0% |
| !! | CGGTGGAAGCATCTTCAACA+GGG | - | chr7.1:34392616-34392635 | MS.gene93683:intron | 50.0% |
| !! | GGTGGAAGCATCTTCAACAG+GGG | - | chr7.1:34392617-34392636 | MS.gene93683:intron | 50.0% |
| !! | GTAGCATTGGCTACCCCAAA+AGG | - | chr7.1:34392997-34393016 | MS.gene93683:intron | 50.0% |
| CATCTTCAACAGGGGAGAGC+GGG | - | chr7.1:34392625-34392644 | MS.gene93683:intron | 55.0% | |
| GCATCTTCAACAGGGGAGAG+CGG | - | chr7.1:34392624-34392643 | MS.gene93683:intron | 55.0% | |
| GCTCGGGTGCATTCTGAGTA+TGG | - | chr7.1:34392267-34392286 | MS.gene93683:CDS | 55.0% | |
| GTGAAGTCAGGGGCTCAGTA+TGG | - | chr7.1:34392213-34392232 | MS.gene93683:CDS | 55.0% | |
| GTGAGGTCAGGGTCTCAGTA+TGG | - | chr7.1:34394157-34394176 | MS.gene93683:CDS | 55.0% | |
| TACTCAGAATGCACCCGAGC+CGG | + | chr7.1:34392267-34392286 | None:intergenic | 55.0% | |
| TTATCGCCATCATCCGGCTC+GGG | - | chr7.1:34392251-34392270 | MS.gene93683:CDS | 55.0% | |
| ! | GCTACTTTGCTTAGTGGCGG+CGG | - | chr7.1:34392678-34392697 | MS.gene93683:intron | 55.0% |
| ! | GGGGCTACTTTGCTTAGTGG+CGG | - | chr7.1:34392675-34392694 | MS.gene93683:intron | 55.0% |
| !! | CCGGTGGAAGCATCTTCAAC+AGG | - | chr7.1:34392615-34392634 | MS.gene93683:intron | 55.0% |
| !! | GCCGTTTTCACAACAACCGG+TGG | - | chr7.1:34392599-34392618 | MS.gene93683:intron | 55.0% |
| AATGCACCCGAGCCGGATGA+TGG | + | chr7.1:34392260-34392279 | None:intergenic | 60.0% | |
| CAACAGGGGAGAGCGGGAAA+AGG | - | chr7.1:34392631-34392650 | MS.gene93683:intron | 60.0% | |
| CGTGCTTTGGTCGACCTGTG+AGG | - | chr7.1:34393930-34393949 | MS.gene93683:CDS | 60.0% | |
| TTGTGAGTCCAGGTCCGCCC+AGG | - | chr7.1:34392550-34392569 | MS.gene93683:intron | 65.0% | |
| GGGAAACGCCTGGGCGGACC+TGG | + | chr7.1:34392561-34392580 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 34391862 | 34394468 | 34391862 | ID=MS.gene93683 |
| chr7.1 | mRNA | 34391862 | 34394468 | 34391862 | ID=MS.gene93683.t1;Parent=MS.gene93683 |
| chr7.1 | exon | 34393571 | 34394468 | 34393571 | ID=MS.gene93683.t1.exon1;Parent=MS.gene93683.t1 |
| chr7.1 | CDS | 34393571 | 34394468 | 34393571 | ID=cds.MS.gene93683.t1;Parent=MS.gene93683.t1 |
| chr7.1 | exon | 34391862 | 34392433 | 34391862 | ID=MS.gene93683.t1.exon2;Parent=MS.gene93683.t1 |
| chr7.1 | CDS | 34391862 | 34392433 | 34391862 | ID=cds.MS.gene93683.t1;Parent=MS.gene93683.t1 |
| Gene Sequence |
| Protein sequence |
