AlfalfaGEDB | MS.gene93733

M. sativa cultivar XinJiangDaYe / MS.gene93733

KEGG: -
GO: -
PFAM: PF14383.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93733.t1	XP_024628511.1	94.9	880	43	1	1	880	1	878	0.00E+00	1558.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93733.t1	A0A396GS26	94.9	880	43	1	1	880	1	878	0.0e+00	1558.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051568	MS.gene93733	0.803843	2.87E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93733.t1	MTR_8g107730	96.364	880	29	2	1	880	1	877	0.0	1747
MS.gene93733.t1	MTR_8g107730	96.419	754	25	1	127	880	1	752	0.0	1502

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93733.t1	AT5G42710	38.627	233	124	7	650	873	581	803	2.04e-36	148
MS.gene93733.t1	AT5G42710	37.719	342	151	14	1	320	9	310	2.37e-36	148
MS.gene93733.t1	AT5G42710	38.627	233	124	7	650	873	580	802	2.05e-36	148
MS.gene93733.t1	AT5G42710	37.719	342	151	14	1	320	9	310	2.40e-36	148
MS.gene93733.t1	AT5G42710	38.095	336	146	14	1	314	9	304	3.02e-36	147
MS.gene93733.t1	AT5G42710	41.579	190	99	4	688	873	618	799	3.04e-36	147

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Find 189 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACCTCAAGTGGATTT+TGG	0.277541	4.2:+29958	MS.gene93733:CDS
AAACGTAATAGCCAAACTAA+TGG	0.382024	4.2:+28522	MS.gene93733:CDS
AAAGCCTTCGACAATAATGG+AGG	0.627560	4.2:+27905	MS.gene93733:CDS
AAAGTGAAAACCACCTCAAG+TGG	0.534061	4.2:+29951	MS.gene93733:CDS
AAATTATGTTGAGGTGATGA+TGG	0.485397	4.2:+28837	MS.gene93733:CDS
AAATTCTTGATATCTTGGGG+AGG	0.620045	4.2:-29262	None:intergenic
AACAAATACAAGAGCAAATG+AGG	0.485283	4.2:+27688	MS.gene93733:CDS
AACAGCTTGATCTTGCAAAT+TGG	0.326245	4.2:-29717	None:intergenic
AACGTAATAGCCAAACTAAT+GGG	0.436410	4.2:+28523	MS.gene93733:CDS
AAGCCTTCGACAATAATGGA+GGG	0.655744	4.2:+27906	MS.gene93733:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTAATAGCCAAACTAA+TGG	+	chr4.2:28522-28541	MS.gene93733:CDS	30.0%
AAATTATGTTGAGGTGATGA+TGG	+	chr4.2:28837-28856	MS.gene93733:CDS	30.0%
AACAAATACAAGAGCAAATG+AGG	+	chr4.2:27688-27707	MS.gene93733:CDS	30.0%
AACGTAATAGCCAAACTAAT+GGG	+	chr4.2:28523-28542	MS.gene93733:CDS	30.0%
AAGTCAATTATCTCCAAAGA+CGG	+	chr4.2:29069-29088	MS.gene93733:CDS	30.0%
AATACTGAAACAGATGCATA+TGG	+	chr4.2:27638-27657	MS.gene93733:intron	30.0%
AATTATGTTGAGGTGATGAT+GGG	+	chr4.2:28838-28857	MS.gene93733:CDS	30.0%
ACTTCTACGTTATACAATTC+TGG	+	chr4.2:29483-29502	MS.gene93733:CDS	30.0%
AGAAGATTAAATTCTACGGA+AGG	+	chr4.2:30242-30261	MS.gene93733:CDS	30.0%
ATCTTGCTCTACATTAATTG+AGG	+	chr4.2:27154-27173	MS.gene93733:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	26835	30489	26835	ID=MS.gene93733
chr4.2	mRNA	26835	30489	26835	ID=MS.gene93733.t1;Parent=MS.gene93733
chr4.2	exon	26835	26955	26835	ID=MS.gene93733.t1.exon1;Parent=MS.gene93733.t1
chr4.2	CDS	26835	26955	26835	ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1
chr4.2	exon	27651	27712	27651	ID=MS.gene93733.t1.exon2;Parent=MS.gene93733.t1
chr4.2	CDS	27651	27712	27651	ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1
chr4.2	exon	27806	29542	27806	ID=MS.gene93733.t1.exon3;Parent=MS.gene93733.t1
chr4.2	CDS	27806	29542	27806	ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1
chr4.2	exon	29689	29803	29689	ID=MS.gene93733.t1.exon4;Parent=MS.gene93733.t1
chr4.2	CDS	29689	29803	29689	ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1
chr4.2	exon	29882	30489	29882	ID=MS.gene93733.t1.exon5;Parent=MS.gene93733.t1
chr4.2	CDS	29882	30489	29882	ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1

Gene Sequence

>MS.gene93733

ATGGCTAAGAGATCAGATTTTGCACAGAAGCTTCTCGATGATCTGCGTGTAAGGAAAGAACGAATGGCTGCTACTGCATCTCATTCTCAAAACTCAAACCAATCCTACCATTTGCCTATAGGTAGTAACATTTTCAGTTTATAATTATATATCCATTCATACAACAATTTCATAGCTTCATTTATTTTAATAACAATGAGCCATTTTATTAATCTTTTGGCACTTCTTTACTCTTCGCTATGATAGAACAGTGCAATTCATAGAGAAGCTGCTAAATATACTTCAACATATGAAAACTTGTGTCCAAACAAGATATTTCATCTTGCTCTACATTAATTGAGGGTGCTGGAGTTGTGAGATTTCTAACTTCCACAGTATATTTAATTAATGATATAGATCAAACAGATTCCTTTCATTCGATGAGCTCTTAAGTATGTCTGATCGAAGATTGTCTTTTTAAGCAAATATTATAAAATTTAAATTGTCAAAATTTTCTTGAATCAAAACCATTAATTCAAATGAGGCATTCCCCTACCTTACTGCCAGTCTTCACTCTCATCACGGACCTTGAAATGATGAAATAAACAACAATTCCTTTTTCAACAACTAGAACTAGTTACTCCAATATACATGACTAATATTGTGATTTGAGATTTCGATGGTGTAAGGCGACGATTTACTAAACAAAACATTACGAGTACGCTCTTTCTTTTGTGTTTTTCAATACTTTATAGTATAAAAACATATACATATGCTCTCAGTTGCTAGTAAAAAAAGAAGATTATAATATCCAATTTTGCCAAAATACTGAAACAGATGCATATGGATACACCAAGCAAACCTACAGAGGGTCAACAAATACAAGAGCAAATGAGGTTGTAAGTAATGTTTGGTATTTTGTGTATGTATAAATAGCAGAGTTGTGTTGGCGGTTAAATAAAATTGTTTGGTGTCCATGTGATGCCCTGCAGGTTAGTTCCAGAAATGGGGAGACGGTGAATTGGTCTAGCAGAAGGCAGAGATCAGTAAAGAGTGCAGGAGACTTGTCAAATCAGATTATCCCATATGGGAAAGCCTTCGACAATAATGGAGGGAAACTAAGAAGGGCCGATCTGTCTATCACCAATTCAATTCTGGGTTTCCTTCACCAGATTCAAAGGGGAAGAATGGATAGAGGAAGCAACTTGGACAGGCAACTAGCTTCAACTAGCCATACCCTCTCTCTTGTACAGATAAACGAGATATCCAAAGGTGCACAGAAACTAAACCACATATTGAGAGCTTGCTGCTCCAATGGTGTTAACATGGATACATATTCATTAACTTTTGCAAAGGAACTATTACAAGGAGCTATTGATTTGGAAGAGTCGCTTGGAATGCTAGTGGATCTGCAGAAAAGTTCAGAGTTTATGATTACCTCGCAAGCACAGAACAAAAATCGAATCACACTATTAGAAGAGGAGGAGGAGGAGAAGGAGGAGGAGGTAGAAGATGAGAGGAGGAGGATGGAGAAAATGCAACTGGCACGTCCAACTTTCTCGGTTGACAACAAGATGCAGAGAGCAATTACAATCACTAACTCTAAGGAAACCAGAAAGATAAAAGATTCTCAGCGGAAGCGAACATCAACTAACACTGGCAGAGCTGCCGACATTTCAAACCAGATGGCCGACAAGGGAAGGATTCCAAACGTAATAGCCAAACTAATGGGACTGGACAACCTTCCTGAGAAGAAGGGTTCGGGTAATTGTAATACTGCATCATCCAAACACTCTGCCAAAGGAAACAGCAGCACCACACTGAAGAGCAAACAAACAGACAATTTGATCAAAAACCAAAAAGTGGCTGTTGGATCCTTCAAAACCATGATGTTTGGTGGTCCAGATAAAAATTTGGTCCTCCAAAACCAAAAGTCTGCCTATTACTCTGAGTCTGAGGTGGTTGGAATAAAAGCATTGAAGGGCTTTGACAAGGCCAGCATCATCAACGATTCTGCTCGTCAAAATTATGTTGAGGTGATGATGGGAAGGAAACAGGATCACCCACATAACAGTGGCACAGTAAAGGACAGAAGTATAAATGGCAATAATCCATTTCAAAATCTAAATAACATGCACGAAAGAAGATCACAAGTTAAACCTGCCATTCAAATTGCAAAAGAAGGACAGACAATCACAAACAAGCATATTAAGATGAACAATGAAAAGAAGTCTCGGGACCATATCGTAGTTCAAAAGTCAATTATCTCCAAAGACGGAGGGAGAGAAATGACACCCAAGAGTTCATCAAAACAATCCACCAATAATCTTCAGAAGAAGAAGAAGCAATCATTCATAAACCAACCCACGCCGTTCAAGATATCACGTGGTGATCTAGATATAGTCGCATCTGATGAGAAAGTAAAAGAAATTATTAAAAGAAAGAAGTCCTCCCCAAGATATCAAGAATTTGAACGAGCTAATGGAACACAAACACTAAAAGATCATAAATTCGTGGACAGCAAGAAAATAAAGTCTGAAAAGATTGAACAAATGTTGAGTAGAAGAAATGAACAAGAAGCTAGTGGTAGAGCATCTGGAAAATTGAATGTCTTGAATGGAGCAGACCAAAAAAGGTTTAGCATATTCACAGAACATGAACTGCTTCCTACTTCTACGTTATACAATTCTGGCAAGAGTGGAGATTTACAAGAATCGGCCAATGATTTGGTAAGCACTGACTGAGTAGGATCTAAAACCGCCAATTTATGTCATATGAACATAAATTACATAATATAAATCTAACAGTTACATGATATGTCTTTCACGAACTAAAATATATAACCCTTTTTTGTTGAACTTAATTTGATTTATAGCAATACCAAGCTGTGCAACCGATAGGAACCAATTTGCAAGATCAAGCTGTTCCTGAGGCAGCACATGAGGGATTCAAGACCAGTGAAGTTGCATACCATAAAAGAAAAACAAATGGTGAGTATAACTAACTAAACACGGATGAATGGAAACAACTTGAGTTCTAGATTTTACCTAGTTTGTTTAATATCACAGGAGTTCAGGAAGACAGAATGGGTGTGAAACAACAAAATCAAAATATGAGCATCCAACAACCACTAACAGAAAGTGAAAACCACCTCAAGTGGATTTTGGTCACGAGTCAATTATTCGTCAACACTGCAGAAGCACTTTTCAGACTAAACATCCCGTTTGGCATTCTTCAAGGTAATCATCAAGACAGTCAAGACCAAAGTAGCAAGCTGATATTAGATTGCGGCTATGAAGTGATGAAAAGAAAGGGGATACGGCAGGAACTCAAAGTTCATACTTGTTCAAAAATATCATCAATCACTAGTACTGTTAACTTGATAAGATCTCTAGATGACTTGGTTAAGAAGCTGAACGAGGACATGGAGAAGATTAAATTCTACGGAAGGAAAAAGAGTAGCAAAGTTGATGTTGAGGACTACCTGCCTAAGATGCTTGAGCATGATATCTATGAAAAATGGCCTGACATAGATTGCATGTGGGATTTAGGTTGGAATGATGAGACATCTGCATTTATCGAAAAATATGATGTTATAAGGGATACAGAAAAGCATATTCTTAGTATACTTCTGGATGAGATCACCAAAGAATATTGCACATTCAAGGAGCGCTGA

Protein sequence

>MS.gene93733.t1

MAKRSDFAQKLLDDLRVRKERMAATASHSQNSNQSYHLPIDAYGYTKQTYRGSTNTRANEVVSSRNGETVNWSSRRQRSVKSAGDLSNQIIPYGKAFDNNGGKLRRADLSITNSILGFLHQIQRGRMDRGSNLDRQLASTSHTLSLVQINEISKGAQKLNHILRACCSNGVNMDTYSLTFAKELLQGAIDLEESLGMLVDLQKSSEFMITSQAQNKNRITLLEEEEEEKEEEVEDERRRMEKMQLARPTFSVDNKMQRAITITNSKETRKIKDSQRKRTSTNTGRAADISNQMADKGRIPNVIAKLMGLDNLPEKKGSGNCNTASSKHSAKGNSSTTLKSKQTDNLIKNQKVAVGSFKTMMFGGPDKNLVLQNQKSAYYSESEVVGIKALKGFDKASIINDSARQNYVEVMMGRKQDHPHNSGTVKDRSINGNNPFQNLNNMHERRSQVKPAIQIAKEGQTITNKHIKMNNEKKSRDHIVVQKSIISKDGGREMTPKSSSKQSTNNLQKKKKQSFINQPTPFKISRGDLDIVASDEKVKEIIKRKKSSPRYQEFERANGTQTLKDHKFVDSKKIKSEKIEQMLSRRNEQEASGRASGKLNVLNGADQKRFSIFTEHELLPTSTLYNSGKSGDLQESANDLQYQAVQPIGTNLQDQAVPEAAHEGFKTSEVAYHKRKTNGVQEDRMGVKQQNQNMSIQQPLTESENHLKWILVTSQLFVNTAEALFRLNIPFGILQGNHQDSQDQSSKLILDCGYEVMKRKGIRQELKVHTCSKISSITSTVNLIRSLDDLVKKLNEDMEKIKFYGRKKSSKVDVEDYLPKMLEHDIYEKWPDIDCMWDLGWNDETSAFIEKYDVIRDTEKHILSILLDEITKEYCTFKER