Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93733.t1 | XP_024628511.1 | 94.9 | 880 | 43 | 1 | 1 | 880 | 1 | 878 | 0.00E+00 | 1558.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93733.t1 | A0A396GS26 | 94.9 | 880 | 43 | 1 | 1 | 880 | 1 | 878 | 0.0e+00 | 1558.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051568 | MS.gene93733 | 0.803843 | 2.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93733.t1 | MTR_8g107730 | 96.364 | 880 | 29 | 2 | 1 | 880 | 1 | 877 | 0.0 | 1747 |
| MS.gene93733.t1 | MTR_8g107730 | 96.419 | 754 | 25 | 1 | 127 | 880 | 1 | 752 | 0.0 | 1502 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93733.t1 | AT5G42710 | 38.627 | 233 | 124 | 7 | 650 | 873 | 581 | 803 | 2.04e-36 | 148 |
| MS.gene93733.t1 | AT5G42710 | 37.719 | 342 | 151 | 14 | 1 | 320 | 9 | 310 | 2.37e-36 | 148 |
| MS.gene93733.t1 | AT5G42710 | 38.627 | 233 | 124 | 7 | 650 | 873 | 580 | 802 | 2.05e-36 | 148 |
| MS.gene93733.t1 | AT5G42710 | 37.719 | 342 | 151 | 14 | 1 | 320 | 9 | 310 | 2.40e-36 | 148 |
| MS.gene93733.t1 | AT5G42710 | 38.095 | 336 | 146 | 14 | 1 | 314 | 9 | 304 | 3.02e-36 | 147 |
| MS.gene93733.t1 | AT5G42710 | 41.579 | 190 | 99 | 4 | 688 | 873 | 618 | 799 | 3.04e-36 | 147 |
Find 189 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCACCGTCTCCCCATTTC+TGG | 0.144963 | 4.2:-27813 | None:intergenic |
| GTCTATCACCAATTCAATTC+TGG | 0.162771 | 4.2:+27949 | MS.gene93733:CDS |
| CTTCTTCTTCTGAAGATTAT+TGG | 0.168911 | 4.2:-29133 | None:intergenic |
| CATTTCTCTCCCTCCGTCTT+TGG | 0.197688 | 4.2:-29082 | None:intergenic |
| CGTTCAAATTCTTGATATCT+TGG | 0.249218 | 4.2:-29267 | None:intergenic |
| ACTTCTACGTTATACAATTC+TGG | 0.266269 | 4.2:+29483 | MS.gene93733:CDS |
| AAACCACCTCAAGTGGATTT+TGG | 0.277541 | 4.2:+29958 | MS.gene93733:CDS |
| CTTGAATGTGCAATATTCTT+TGG | 0.280321 | 4.2:-30458 | None:intergenic |
| CCATTCTTCCCCTTTGAATC+TGG | 0.291776 | 4.2:-27982 | None:intergenic |
| ATAGATTGCATGTGGGATTT+AGG | 0.293282 | 4.2:+30343 | MS.gene93733:CDS |
| GCATATTCTTAGTATACTTC+TGG | 0.301252 | 4.2:+30426 | MS.gene93733:CDS |
| CACTTTCTGTTAGTGGTTGT+TGG | 0.315572 | 4.2:-29934 | None:intergenic |
| GTTTCCTTTGGCAGAGTGTT+TGG | 0.323736 | 4.2:-28599 | None:intergenic |
| CTAATATCAGCTTGCTACTT+TGG | 0.326090 | 4.2:-30075 | None:intergenic |
| AACAGCTTGATCTTGCAAAT+TGG | 0.326245 | 4.2:-29717 | None:intergenic |
| ACAAGAATCGGCCAATGATT+TGG | 0.326499 | 4.2:+29521 | MS.gene93733:CDS |
| GTAAAGGACAGAAGTATAAA+TGG | 0.329098 | 4.2:+28895 | MS.gene93733:CDS |
| ATATCATGCTCAAGCATCTT+AGG | 0.336104 | 4.2:-30301 | None:intergenic |
| ATTAGTTTGGCTATTACGTT+TGG | 0.339628 | 4.2:-28520 | None:intergenic |
| TCTATCACCAATTCAATTCT+GGG | 0.348290 | 4.2:+27950 | MS.gene93733:CDS |
| TCCTTCCCTTGTCGGCCATC+TGG | 0.352183 | 4.2:-28495 | None:intergenic |
| CAGAGTAATAGGCAGACTTT+TGG | 0.355845 | 4.2:-28741 | None:intergenic |
| GTTCAAATTCTTGATATCTT+GGG | 0.359126 | 4.2:-29266 | None:intergenic |
| CACCTCAGACTCAGAGTAAT+AGG | 0.360186 | 4.2:-28752 | None:intergenic |
| CAAGAATTTGAACGAGCTAA+TGG | 0.362281 | 4.2:+29276 | MS.gene93733:CDS |
| TTGTCGAAGGCTTTCCCATA+TGG | 0.368196 | 4.2:-27896 | None:intergenic |
| GTTTAATATCACAGGAGTTC+AGG | 0.368579 | 4.2:+29868 | MS.gene93733:intron |
| ATTACAAGGAGCTATTGATT+TGG | 0.375060 | 4.2:+28174 | MS.gene93733:CDS |
| TCAAATCAGATTATCCCATA+TGG | 0.376318 | 4.2:+27881 | MS.gene93733:CDS |
| GGGAAAGCCTTCGACAATAA+TGG | 0.379352 | 4.2:+27902 | MS.gene93733:CDS |
| AAACGTAATAGCCAAACTAA+TGG | 0.382024 | 4.2:+28522 | MS.gene93733:CDS |
| GTTGTCCAGTCCCATTAGTT+TGG | 0.387006 | 4.2:-28533 | None:intergenic |
| ACTGGCACGTCCAACTTTCT+CGG | 0.389646 | 4.2:+28354 | MS.gene93733:CDS |
| TGTGGTGCTGCTGTTTCCTT+TGG | 0.391116 | 4.2:-28611 | None:intergenic |
| CAATCCTACCATTTGCCTAT+AGG | 0.395273 | 4.2:+26934 | MS.gene93733:CDS |
| TGCAGGTTAGTTCCAGAAAT+GGG | 0.405496 | 4.2:+27801 | MS.gene93733:intron |
| TGACCCTCTGTAGGTTTGCT+TGG | 0.406588 | 4.2:-27666 | None:intergenic |
| TTTACTGTGCCACTGTTATG+TGG | 0.407009 | 4.2:-28877 | None:intergenic |
| GGAGGAGGAGAAGGAGGAGG+AGG | 0.407705 | 4.2:+28297 | MS.gene93733:CDS |
| GTTTGGAATCCTTCCCTTGT+CGG | 0.407895 | 4.2:-28503 | None:intergenic |
| CTGCAGGTTAGTTCCAGAAA+TGG | 0.409872 | 4.2:+27800 | MS.gene93733:intron |
| ATTGCATGTGGGATTTAGGT+TGG | 0.411296 | 4.2:+30347 | MS.gene93733:CDS |
| AATTACAATCACTAACTCTA+AGG | 0.416083 | 4.2:+28399 | MS.gene93733:CDS |
| GGAGGAGGAGGAGAAGGAGG+AGG | 0.416209 | 4.2:+28294 | MS.gene93733:CDS |
| GAAGCTAGTGGTAGAGCATC+TGG | 0.418516 | 4.2:+29390 | MS.gene93733:CDS |
| GGTGATGATGGGAAGGAAAC+AGG | 0.422219 | 4.2:+28849 | MS.gene93733:CDS |
| GAGTGGAGATTTACAAGAAT+CGG | 0.422961 | 4.2:+29509 | MS.gene93733:CDS |
| AAGGAAACCCAGAATTGAAT+TGG | 0.430418 | 4.2:-27957 | None:intergenic |
| GTTTAGTTTCTGTGCACCTT+TGG | 0.430961 | 4.2:-28080 | None:intergenic |
| ATCCCGTTTGGCATTCTTCA+AGG | 0.435621 | 4.2:+30031 | MS.gene93733:CDS |
| AACGTAATAGCCAAACTAAT+GGG | 0.436410 | 4.2:+28523 | MS.gene93733:CDS |
| TTCCTATCGGTTGCACAGCT+TGG | 0.442222 | 4.2:-29694 | None:intergenic |
| CAAAGAATATTGCACATTCA+AGG | 0.442613 | 4.2:+30459 | MS.gene93733:CDS |
| TGTCGAAGGCTTTCCCATAT+GGG | 0.443080 | 4.2:-27895 | None:intergenic |
| CCTTCCTGAGAAGAAGGGTT+CGG | 0.452402 | 4.2:+28555 | MS.gene93733:CDS |
| AGAAGATGAGAGGAGGAGGA+TGG | 0.452891 | 4.2:+28321 | MS.gene93733:CDS |
| CTTCCTGAGAAGAAGGGTTC+GGG | 0.453780 | 4.2:+28556 | MS.gene93733:CDS |
| TCCTTCAAAACCATGATGTT+TGG | 0.453949 | 4.2:+28688 | MS.gene93733:CDS |
| AATACTGAAACAGATGCATA+TGG | 0.455160 | 4.2:+27638 | MS.gene93733:intron |
| TTCTCGATGATCTGCGTGTA+AGG | 0.455737 | 4.2:+26866 | MS.gene93733:CDS |
| TTCAGACTAAACATCCCGTT+TGG | 0.459991 | 4.2:+30019 | MS.gene93733:CDS |
| AATCCCTCATGTGCTGCCTC+AGG | 0.463413 | 4.2:-29740 | None:intergenic |
| CTATAGGCAAATGGTAGGAT+TGG | 0.464033 | 4.2:-26933 | None:intergenic |
| TACCTTGAAGAATGCCAAAC+GGG | 0.467904 | 4.2:-30033 | None:intergenic |
| CTTCTTCTGAAGATTATTGG+TGG | 0.468168 | 4.2:-29130 | None:intergenic |
| GTCAGTGCTTACCAAATCAT+TGG | 0.470502 | 4.2:-29532 | None:intergenic |
| CCAGATTCAAAGGGGAAGAA+TGG | 0.472715 | 4.2:+27982 | MS.gene93733:CDS |
| TTTATGGTATGCAACTTCAC+TGG | 0.473868 | 4.2:-29768 | None:intergenic |
| AGGTAGAAGATGAGAGGAGG+AGG | 0.474114 | 4.2:+28317 | MS.gene93733:CDS |
| GGCCATCTGGTTTGAAATGT+CGG | 0.476301 | 4.2:-28482 | None:intergenic |
| TTACCCGAACCCTTCTTCTC+AGG | 0.477171 | 4.2:-28559 | None:intergenic |
| AGCAGAATCGTTGATGATGC+TGG | 0.478498 | 4.2:-28809 | None:intergenic |
| GGAAAATTGAATGTCTTGAA+TGG | 0.478536 | 4.2:+29411 | MS.gene93733:CDS |
| GAAATGGGGAGACGGTGAAT+TGG | 0.482187 | 4.2:+27816 | MS.gene93733:CDS |
| TTCAAATTCTTGATATCTTG+GGG | 0.482601 | 4.2:-29265 | None:intergenic |
| TGTATTTGTTGACCCTCTGT+AGG | 0.484598 | 4.2:-27675 | None:intergenic |
| AACAAATACAAGAGCAAATG+AGG | 0.485283 | 4.2:+27688 | MS.gene93733:CDS |
| AAATTATGTTGAGGTGATGA+TGG | 0.485397 | 4.2:+28837 | MS.gene93733:CDS |
| GCCATTCAAATTGCAAAAGA+AGG | 0.489982 | 4.2:+28976 | MS.gene93733:CDS |
| ATATCTTGAACGGCGTGGGT+TGG | 0.491612 | 4.2:-29173 | None:intergenic |
| TGTATCCATGTTAACACCAT+TGG | 0.491658 | 4.2:-28125 | None:intergenic |
| CAAATCAGATTATCCCATAT+GGG | 0.493768 | 4.2:+27882 | MS.gene93733:CDS |
| TTCCCCTTTGAATCTGGTGA+AGG | 0.495898 | 4.2:-27976 | None:intergenic |
| TCCCACATGCAATCTATGTC+AGG | 0.502894 | 4.2:-30337 | None:intergenic |
| CAAAGGGGAAGAATGGATAG+AGG | 0.503785 | 4.2:+27989 | MS.gene93733:CDS |
| AGGAGTTCAGGAAGACAGAA+TGG | 0.504166 | 4.2:+29880 | MS.gene93733:intron |
| ATCTGGACCACCAAACATCA+TGG | 0.505621 | 4.2:-28698 | None:intergenic |
| GGACAACCTTCCTGAGAAGA+AGG | 0.506952 | 4.2:+28549 | MS.gene93733:CDS |
| TGTTACTACCTATAGGCAAA+TGG | 0.511737 | 4.2:-26942 | None:intergenic |
| CACACTATTAGAAGAGGAGG+AGG | 0.511782 | 4.2:+28279 | MS.gene93733:CDS |
| TTTCCTTCACCAGATTCAAA+GGG | 0.513731 | 4.2:+27973 | MS.gene93733:CDS |
| TCTTGCAAATTGGTTCCTAT+CGG | 0.513990 | 4.2:-29707 | None:intergenic |
| GGTTGGAATAAAAGCATTGA+AGG | 0.514197 | 4.2:+28774 | MS.gene93733:CDS |
| GAGGATGGAGAAAATGCAAC+TGG | 0.520795 | 4.2:+28336 | MS.gene93733:CDS |
| TTTCCCTCCATTATTGTCGA+AGG | 0.521178 | 4.2:-27909 | None:intergenic |
| TTCAAAACCATGATGTTTGG+TGG | 0.521517 | 4.2:+28691 | MS.gene93733:CDS |
| GTTTCCTTCACCAGATTCAA+AGG | 0.521691 | 4.2:+27972 | MS.gene93733:CDS |
| CAGAGATCAGTAAAGAGTGC+AGG | 0.521851 | 4.2:+27851 | MS.gene93733:CDS |
| TACTCTGAGTCTGAGGTGGT+TGG | 0.522744 | 4.2:+28757 | MS.gene93733:CDS |
| ACCAGATGGCCGACAAGGGA+AGG | 0.523601 | 4.2:+28494 | MS.gene93733:CDS |
| TATGAAGTGATGAAAAGAAA+GGG | 0.524717 | 4.2:+30106 | MS.gene93733:CDS |
| TGTTCCTGAGGCAGCACATG+AGG | 0.526845 | 4.2:+29736 | MS.gene93733:CDS |
| TCTGTACAAGAGAGAGGGTA+TGG | 0.527903 | 4.2:-28045 | None:intergenic |
| ACTATTAGAAGAGGAGGAGG+AGG | 0.529138 | 4.2:+28282 | MS.gene93733:CDS |
| AATGGATAGAGGAAGCAACT+TGG | 0.530831 | 4.2:+28000 | MS.gene93733:CDS |
| TGAACAATGAAAAGAAGTCT+CGG | 0.532953 | 4.2:+29028 | MS.gene93733:CDS |
| AAAGTGAAAACCACCTCAAG+TGG | 0.534061 | 4.2:+29951 | MS.gene93733:CDS |
| AGCAGCAAGCTCTCAATATG+TGG | 0.534625 | 4.2:-28102 | None:intergenic |
| TTCAAACCAGATGGCCGACA+AGG | 0.536635 | 4.2:+28489 | MS.gene93733:CDS |
| ATAATGGAGGGAAACTAAGA+AGG | 0.537616 | 4.2:+27918 | MS.gene93733:CDS |
| ATTGATTTGGAAGAGTCGCT+TGG | 0.539040 | 4.2:+28187 | MS.gene93733:CDS |
| CTGCTCCAATGGTGTTAACA+TGG | 0.539988 | 4.2:+28120 | MS.gene93733:CDS |
| TTGAGAGCTTGCTGCTCCAA+TGG | 0.550574 | 4.2:+28109 | MS.gene93733:CDS |
| AGGAGGAGGTAGAAGATGAG+AGG | 0.550786 | 4.2:+28311 | MS.gene93733:CDS |
| ATAGAGGAAGCAACTTGGAC+AGG | 0.552642 | 4.2:+28005 | MS.gene93733:CDS |
| ATGGAGAAGATTAAATTCTA+CGG | 0.554997 | 4.2:+30238 | MS.gene93733:CDS |
| TTACTGTGCCACTGTTATGT+GGG | 0.556074 | 4.2:-28876 | None:intergenic |
| TGATGAAAAGAAAGGGGATA+CGG | 0.559049 | 4.2:+30113 | MS.gene93733:CDS |
| GATAAGATCTCTAGATGACT+TGG | 0.560395 | 4.2:+30195 | MS.gene93733:CDS |
| TAAGAAGCTGAACGAGGACA+TGG | 0.560558 | 4.2:+30219 | MS.gene93733:CDS |
| GAACAATGAAAAGAAGTCTC+GGG | 0.562253 | 4.2:+29029 | MS.gene93733:CDS |
| CATGCTCAAGCATCTTAGGC+AGG | 0.564457 | 4.2:-30297 | None:intergenic |
| AATAGCCAAACTAATGGGAC+TGG | 0.564475 | 4.2:+28528 | MS.gene93733:CDS |
| CTATGAAGTGATGAAAAGAA+AGG | 0.565972 | 4.2:+30105 | MS.gene93733:CDS |
| CCGAACCCTTCTTCTCAGGA+AGG | 0.566132 | 4.2:-28555 | None:intergenic |
| TTTGCAAAGGAACTATTACA+AGG | 0.566481 | 4.2:+28160 | MS.gene93733:CDS |
| TTACCTTGAAGAATGCCAAA+CGG | 0.573864 | 4.2:-30034 | None:intergenic |
| GAATTGTATAACGTAGAAGT+AGG | 0.577863 | 4.2:-29480 | None:intergenic |
| AGCATTGAAGGGCTTTGACA+AGG | 0.578051 | 4.2:+28786 | MS.gene93733:CDS |
| CGTTTATCTGTACAAGAGAG+AGG | 0.578616 | 4.2:-28051 | None:intergenic |
| ACATAACAGTGGCACAGTAA+AGG | 0.578855 | 4.2:+28879 | MS.gene93733:CDS |
| TGCCTATTACTCTGAGTCTG+AGG | 0.579876 | 4.2:+28750 | MS.gene93733:CDS |
| ACTAAAAGATCATAAATTCG+TGG | 0.580506 | 4.2:+29308 | MS.gene93733:CDS |
| CGGTGAATTGGTCTAGCAGA+AGG | 0.582158 | 4.2:+27828 | MS.gene93733:CDS |
| CGTGATATCTTGAACGGCGT+GGG | 0.582273 | 4.2:-29177 | None:intergenic |
| GAAAAGAAAGGGGATACGGC+AGG | 0.585244 | 4.2:+30117 | MS.gene93733:CDS |
| AGGAGGTAGAAGATGAGAGG+AGG | 0.587972 | 4.2:+28314 | MS.gene93733:CDS |
| TGCTCGTCAAAATTATGTTG+AGG | 0.588454 | 4.2:+28828 | MS.gene93733:CDS |
| TGAATTGGTGATAGACAGAT+CGG | 0.588623 | 4.2:-27942 | None:intergenic |
| TTATACAATTCTGGCAAGAG+TGG | 0.589766 | 4.2:+29492 | MS.gene93733:CDS |
| GGAGTTCAGGAAGACAGAAT+GGG | 0.593117 | 4.2:+29881 | MS.gene93733:intron |
| TTGTTGTCAACCGAGAAAGT+TGG | 0.593265 | 4.2:-28364 | None:intergenic |
| TCATCCAAACACTCTGCCAA+AGG | 0.594757 | 4.2:+28595 | MS.gene93733:CDS |
| AAGTCAATTATCTCCAAAGA+CGG | 0.601222 | 4.2:+29069 | MS.gene93733:CDS |
| AGAAGATTAAATTCTACGGA+AGG | 0.603033 | 4.2:+30242 | MS.gene93733:CDS |
| TCGAATCACACTATTAGAAG+AGG | 0.604609 | 4.2:+28273 | MS.gene93733:CDS |
| TGACCAAAATCCACTTGAGG+TGG | 0.604873 | 4.2:-29961 | None:intergenic |
| GAGTAGCAAAGTTGATGTTG+AGG | 0.606782 | 4.2:+30270 | MS.gene93733:CDS |
| TGCCGACATTTCAAACCAGA+TGG | 0.612171 | 4.2:+28480 | MS.gene93733:CDS |
| TAATGGAGGGAAACTAAGAA+GGG | 0.613649 | 4.2:+27919 | MS.gene93733:CDS |
| TCAAACCAGATGGCCGACAA+GGG | 0.617070 | 4.2:+28490 | MS.gene93733:CDS |
| AATTATGTTGAGGTGATGAT+GGG | 0.619461 | 4.2:+28838 | MS.gene93733:CDS |
| AAATTCTTGATATCTTGGGG+AGG | 0.620045 | 4.2:-29262 | None:intergenic |
| ACGTGATATCTTGAACGGCG+TGG | 0.620192 | 4.2:-29178 | None:intergenic |
| ATGAAGTGATGAAAAGAAAG+GGG | 0.620260 | 4.2:+30107 | MS.gene93733:CDS |
| GCGTGTAAGGAAAGAACGAA+TGG | 0.620983 | 4.2:+26879 | MS.gene93733:CDS |
| AGAGTCGCTTGGAATGCTAG+TGG | 0.621270 | 4.2:+28198 | MS.gene93733:CDS |
| TGTTTGTTTGCTCTTCAGTG+TGG | 0.623538 | 4.2:-28629 | None:intergenic |
| CTATTACTCTGAGTCTGAGG+TGG | 0.623717 | 4.2:+28753 | MS.gene93733:CDS |
| AAAGCCTTCGACAATAATGG+AGG | 0.627560 | 4.2:+27905 | MS.gene93733:CDS |
| AATCACACTATTAGAAGAGG+AGG | 0.627745 | 4.2:+28276 | MS.gene93733:CDS |
| GTTGGAATAAAAGCATTGAA+GGG | 0.628624 | 4.2:+28775 | MS.gene93733:CDS |
| GTTCCTGAGGCAGCACATGA+GGG | 0.628945 | 4.2:+29737 | MS.gene93733:CDS |
| TCACCACGTGATATCTTGAA+CGG | 0.629156 | 4.2:-29183 | None:intergenic |
| AAGCGAACATCAACTAACAC+TGG | 0.631582 | 4.2:+28451 | MS.gene93733:CDS |
| ATGTTGAGGTGATGATGGGA+AGG | 0.632854 | 4.2:+28842 | MS.gene93733:CDS |
| CAGATAAACGAGATATCCAA+AGG | 0.634157 | 4.2:+28064 | MS.gene93733:CDS |
| GTTTATCTGTACAAGAGAGA+GGG | 0.634910 | 4.2:-28050 | None:intergenic |
| CAATTATCTCCAAAGACGGA+GGG | 0.635481 | 4.2:+29073 | MS.gene93733:CDS |
| GACAACCTTCCTGAGAAGAA+GGG | 0.635656 | 4.2:+28550 | MS.gene93733:CDS |
| TAGTTCCAGAAATGGGGAGA+CGG | 0.635790 | 4.2:+27808 | MS.gene93733:CDS |
| TCAATTATCTCCAAAGACGG+AGG | 0.637204 | 4.2:+29072 | MS.gene93733:CDS |
| GCAAGATCAAGCTGTTCCTG+AGG | 0.637648 | 4.2:+29724 | MS.gene93733:CDS |
| AGAAATGAACAAGAAGCTAG+TGG | 0.637949 | 4.2:+29378 | MS.gene93733:CDS |
| ACTACCTATAGGCAAATGGT+AGG | 0.640273 | 4.2:-26938 | None:intergenic |
| GGCCTGACATAGATTGCATG+TGG | 0.647566 | 4.2:+30335 | MS.gene93733:CDS |
| AGCAAGCTGATATTAGATTG+CGG | 0.654345 | 4.2:+30082 | MS.gene93733:CDS |
| TACACCAAGCAAACCTACAG+AGG | 0.655062 | 4.2:+27662 | MS.gene93733:CDS |
| AAGCCTTCGACAATAATGGA+GGG | 0.655744 | 4.2:+27906 | MS.gene93733:CDS |
| GCAGGTTAGTTCCAGAAATG+GGG | 0.665078 | 4.2:+27802 | MS.gene93733:intron |
| TACCAAGCTGTGCAACCGAT+AGG | 0.665962 | 4.2:+29692 | MS.gene93733:CDS |
| ACACCAAGCAAACCTACAGA+GGG | 0.682351 | 4.2:+27663 | MS.gene93733:CDS |
| GAAAGATAAAAGATTCTCAG+CGG | 0.691703 | 4.2:+28428 | MS.gene93733:CDS |
| TTCCTTCACCAGATTCAAAG+GGG | 0.696874 | 4.2:+27974 | MS.gene93733:CDS |
| CTTGGTTAAGAAGCTGAACG+AGG | 0.698158 | 4.2:+30213 | MS.gene93733:CDS |
| TCGTGACCAAAATCCACTTG+AGG | 0.699292 | 4.2:-29964 | None:intergenic |
| GCCTGACATAGATTGCATGT+GGG | 0.711274 | 4.2:+30336 | MS.gene93733:CDS |
| CAGGATCACCCACATAACAG+TGG | 0.731848 | 4.2:+28868 | MS.gene93733:CDS |
| ACGCCGTTCAAGATATCACG+TGG | 0.736213 | 4.2:+29180 | MS.gene93733:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAGTTCAACAAAAAA+GGG | - | chr4.2:29660-29679 | None:intergenic | 15.0% |
| !! | ATCATTAATTAAATATACTG+TGG | - | chr4.2:27207-27226 | None:intergenic | 15.0% |
| !!! | ATGTTATTTAGATTTTGAAA+TGG | - | chr4.2:28928-28947 | None:intergenic | 15.0% |
| !! | ACAATATTAGTCATGTATAT+TGG | - | chr4.2:27459-27478 | None:intergenic | 20.0% |
| !! | CAAATTAAGTTCAACAAAAA+AGG | - | chr4.2:29661-29680 | None:intergenic | 20.0% |
| !! | CGAAAAATATGATGTTATAA+GGG | + | chr4.2:30393-30412 | MS.gene93733:CDS | 20.0% |
| !! | TACCATAAAAGAAAAACAAA+TGG | + | chr4.2:29782-29801 | MS.gene93733:CDS | 20.0% |
| !! | TATGTTCATATGACATAAAT+TGG | - | chr4.2:29577-29596 | None:intergenic | 20.0% |
| !! | TCGAAAAATATGATGTTATA+AGG | + | chr4.2:30392-30411 | MS.gene93733:CDS | 20.0% |
| !! | TTGTTTATTTCATCATTTCA+AGG | - | chr4.2:27403-27422 | None:intergenic | 20.0% |
| !!! | ATATTCATTAACTTTTGCAA+AGG | + | chr4.2:28147-28166 | MS.gene93733:CDS | 20.0% |
| ! | AATTACAATCACTAACTCTA+AGG | + | chr4.2:28399-28418 | MS.gene93733:CDS | 25.0% |
| ! | ACTAAAAGATCATAAATTCG+TGG | + | chr4.2:29308-29327 | MS.gene93733:CDS | 25.0% |
| ! | AGCATGATATCTATGAAAAA+TGG | + | chr4.2:30314-30333 | MS.gene93733:CDS | 25.0% |
| ! | ATGGAGAAGATTAAATTCTA+CGG | + | chr4.2:30238-30257 | MS.gene93733:CDS | 25.0% |
| ! | CAAAACCATTAATTCAAATG+AGG | + | chr4.2:27336-27355 | MS.gene93733:intron | 25.0% |
| ! | CTATGAAATTGTTGTATGAA+TGG | - | chr4.2:26990-27009 | None:intergenic | 25.0% |
| ! | GTGCCAAAAGATTAATAAAA+TGG | - | chr4.2:27038-27057 | None:intergenic | 25.0% |
| ! | GTTCAAATTCTTGATATCTT+GGG | - | chr4.2:29269-29288 | None:intergenic | 25.0% |
| ! | TATGAAGTGATGAAAAGAAA+GGG | + | chr4.2:30106-30125 | MS.gene93733:CDS | 25.0% |
| ! | TGAGTATAACTAACTAAACA+CGG | + | chr4.2:29805-29824 | MS.gene93733:intron | 25.0% |
| ! | TTCAAATTCTTGATATCTTG+GGG | - | chr4.2:29268-29287 | None:intergenic | 25.0% |
| ! | TTTGATCAAAAACCAAAAAG+TGG | + | chr4.2:28657-28676 | MS.gene93733:CDS | 25.0% |
| !!! | CACCATTTGTTTTTCTTTTA+TGG | - | chr4.2:29787-29806 | None:intergenic | 25.0% |
| !!! | GAGCCATTTTATTAATCTTT+TGG | + | chr4.2:27032-27051 | MS.gene93733:intron | 25.0% |
| !!! | TGAATATGCTAAACCTTTTT+TGG | - | chr4.2:29443-29462 | None:intergenic | 25.0% |
| !!! | TTTCAGTATTTTGGCAAAAT+TGG | - | chr4.2:27628-27647 | None:intergenic | 25.0% |
| AAACGTAATAGCCAAACTAA+TGG | + | chr4.2:28522-28541 | MS.gene93733:CDS | 30.0% | |
| AAATTATGTTGAGGTGATGA+TGG | + | chr4.2:28837-28856 | MS.gene93733:CDS | 30.0% | |
| AACAAATACAAGAGCAAATG+AGG | + | chr4.2:27688-27707 | MS.gene93733:CDS | 30.0% | |
| AACGTAATAGCCAAACTAAT+GGG | + | chr4.2:28523-28542 | MS.gene93733:CDS | 30.0% | |
| AAGTCAATTATCTCCAAAGA+CGG | + | chr4.2:29069-29088 | MS.gene93733:CDS | 30.0% | |
| AATACTGAAACAGATGCATA+TGG | + | chr4.2:27638-27657 | MS.gene93733:intron | 30.0% | |
| AATTATGTTGAGGTGATGAT+GGG | + | chr4.2:28838-28857 | MS.gene93733:CDS | 30.0% | |
| ACTTCTACGTTATACAATTC+TGG | + | chr4.2:29483-29502 | MS.gene93733:CDS | 30.0% | |
| AGAAGATTAAATTCTACGGA+AGG | + | chr4.2:30242-30261 | MS.gene93733:CDS | 30.0% | |
| ATCTTGCTCTACATTAATTG+AGG | + | chr4.2:27154-27173 | MS.gene93733:intron | 30.0% | |
| ATGAAGTGATGAAAAGAAAG+GGG | + | chr4.2:30107-30126 | MS.gene93733:CDS | 30.0% | |
| ATGAGGTTGTAAGTAATGTT+TGG | + | chr4.2:27705-27724 | MS.gene93733:intron | 30.0% | |
| CAAAGAATATTGCACATTCA+AGG | + | chr4.2:30459-30478 | MS.gene93733:CDS | 30.0% | |
| CAAATCAGATTATCCCATAT+GGG | + | chr4.2:27882-27901 | MS.gene93733:CDS | 30.0% | |
| CCTGTGATATTAAACAAACT+AGG | - | chr4.2:29863-29882 | None:intergenic | 30.0% | |
| CGTTCAAATTCTTGATATCT+TGG | - | chr4.2:29270-29289 | None:intergenic | 30.0% | |
| CTATGAAGTGATGAAAAGAA+AGG | + | chr4.2:30105-30124 | MS.gene93733:CDS | 30.0% | |
| CTGAAAATGTTACTACCTAT+AGG | - | chr4.2:26952-26971 | None:intergenic | 30.0% | |
| CTTGAATGTGCAATATTCTT+TGG | - | chr4.2:30461-30480 | None:intergenic | 30.0% | |
| GAAAGATAAAAGATTCTCAG+CGG | + | chr4.2:28428-28447 | MS.gene93733:CDS | 30.0% | |
| GAATGCCTCATTTGAATTAA+TGG | - | chr4.2:27344-27363 | None:intergenic | 30.0% | |
| GAATTGTATAACGTAGAAGT+AGG | - | chr4.2:29483-29502 | None:intergenic | 30.0% | |
| GCAAGATGAAATATCTTGTT+TGG | - | chr4.2:27141-27160 | None:intergenic | 30.0% | |
| GCATATTCTTAGTATACTTC+TGG | + | chr4.2:30426-30445 | MS.gene93733:CDS | 30.0% | |
| GGAAAATTGAATGTCTTGAA+TGG | + | chr4.2:29411-29430 | MS.gene93733:CDS | 30.0% | |
| GGCGGTTAAATAAAATTGTT+TGG | + | chr4.2:27762-27781 | MS.gene93733:intron | 30.0% | |
| GTTCATATGACATAAATTGG+CGG | - | chr4.2:29574-29593 | None:intergenic | 30.0% | |
| TATAAATAGCAGAGTTGTGT+TGG | + | chr4.2:27741-27760 | MS.gene93733:intron | 30.0% | |
| TCAAATCAGATTATCCCATA+TGG | + | chr4.2:27881-27900 | MS.gene93733:CDS | 30.0% | |
| TCTATCACCAATTCAATTCT+GGG | + | chr4.2:27950-27969 | MS.gene93733:CDS | 30.0% | |
| TCTTGCTCTACATTAATTGA+GGG | + | chr4.2:27155-27174 | MS.gene93733:intron | 30.0% | |
| TGAACAATGAAAAGAAGTCT+CGG | + | chr4.2:29028-29047 | MS.gene93733:CDS | 30.0% | |
| TTTGCAAAGGAACTATTACA+AGG | + | chr4.2:28160-28179 | MS.gene93733:CDS | 30.0% | |
| ! | ATGCATCTGTTTCAGTATTT+TGG | - | chr4.2:27637-27656 | None:intergenic | 30.0% |
| ! | ATTACAAGGAGCTATTGATT+TGG | + | chr4.2:28174-28193 | MS.gene93733:CDS | 30.0% |
| ! | ATTAGTTTGGCTATTACGTT+TGG | - | chr4.2:28523-28542 | None:intergenic | 30.0% |
| ! | ATTGTGATTTGAGATTTCGA+TGG | + | chr4.2:27474-27493 | MS.gene93733:intron | 30.0% |
| ! | CTGAGAATCTTTTATCTTTC+TGG | - | chr4.2:28428-28447 | None:intergenic | 30.0% |
| ! | CTTCTTCTTCTGAAGATTAT+TGG | - | chr4.2:29136-29155 | None:intergenic | 30.0% |
| ! | GTAAAGGACAGAAGTATAAA+TGG | + | chr4.2:28895-28914 | MS.gene93733:CDS | 30.0% |
| ! | TCCTTCTTTTGCAATTTGAA+TGG | - | chr4.2:28980-28999 | None:intergenic | 30.0% |
| ! | TTGACTTTTGAACTACGATA+TGG | - | chr4.2:29056-29075 | None:intergenic | 30.0% |
| !! | CCTAGTTTGTTTAATATCAC+AGG | + | chr4.2:29860-29879 | MS.gene93733:intron | 30.0% |
| !! | CTAGTTCTAGTTGTTGAAAA+AGG | - | chr4.2:27431-27450 | None:intergenic | 30.0% |
| !! | GTTGGAATAAAAGCATTGAA+GGG | + | chr4.2:28775-28794 | MS.gene93733:CDS | 30.0% |
| !!! | GATTGTTTTGATGAACTCTT+GGG | - | chr4.2:29111-29130 | None:intergenic | 30.0% |
| AAAAACCAAAAAGTGGCTGT+TGG | + | chr4.2:28664-28683 | MS.gene93733:CDS | 35.0% | |
| AAATTCTTGATATCTTGGGG+AGG | - | chr4.2:29265-29284 | None:intergenic | 35.0% | |
| AACAGCTTGATCTTGCAAAT+TGG | - | chr4.2:29720-29739 | None:intergenic | 35.0% | |
| AAGGAAACCCAGAATTGAAT+TGG | - | chr4.2:27960-27979 | None:intergenic | 35.0% | |
| AATCACACTATTAGAAGAGG+AGG | + | chr4.2:28276-28295 | MS.gene93733:CDS | 35.0% | |
| ACTAACTAAACACGGATGAA+TGG | + | chr4.2:29813-29832 | MS.gene93733:intron | 35.0% | |
| AGAAATGAACAAGAAGCTAG+TGG | + | chr4.2:29378-29397 | MS.gene93733:CDS | 35.0% | |
| AGCAAGCTGATATTAGATTG+CGG | + | chr4.2:30082-30101 | MS.gene93733:CDS | 35.0% | |
| ATAGATTGCATGTGGGATTT+AGG | + | chr4.2:30343-30362 | MS.gene93733:CDS | 35.0% | |
| ATATCATGCTCAAGCATCTT+AGG | - | chr4.2:30304-30323 | None:intergenic | 35.0% | |
| CAAGAATTTGAACGAGCTAA+TGG | + | chr4.2:29276-29295 | MS.gene93733:CDS | 35.0% | |
| CAGATAAACGAGATATCCAA+AGG | + | chr4.2:28064-28083 | MS.gene93733:CDS | 35.0% | |
| GAACAATGAAAAGAAGTCTC+GGG | + | chr4.2:29029-29048 | MS.gene93733:CDS | 35.0% | |
| GAGTGGAGATTTACAAGAAT+CGG | + | chr4.2:29509-29528 | MS.gene93733:CDS | 35.0% | |
| GATAAGATCTCTAGATGACT+TGG | + | chr4.2:30195-30214 | MS.gene93733:CDS | 35.0% | |
| GCCATTCAAATTGCAAAAGA+AGG | + | chr4.2:28976-28995 | MS.gene93733:CDS | 35.0% | |
| GTCTATCACCAATTCAATTC+TGG | + | chr4.2:27949-27968 | MS.gene93733:CDS | 35.0% | |
| GTTTAATATCACAGGAGTTC+AGG | + | chr4.2:29868-29887 | MS.gene93733:intron | 35.0% | |
| GTTTATCTGTACAAGAGAGA+GGG | - | chr4.2:28053-28072 | None:intergenic | 35.0% | |
| TAATGGAGGGAAACTAAGAA+GGG | + | chr4.2:27919-27938 | MS.gene93733:CDS | 35.0% | |
| TCCTTCAAAACCATGATGTT+TGG | + | chr4.2:28688-28707 | MS.gene93733:CDS | 35.0% | |
| TCGAATCACACTATTAGAAG+AGG | + | chr4.2:28273-28292 | MS.gene93733:CDS | 35.0% | |
| TGATGAAAAGAAAGGGGATA+CGG | + | chr4.2:30113-30132 | MS.gene93733:CDS | 35.0% | |
| TGCTCGTCAAAATTATGTTG+AGG | + | chr4.2:28828-28847 | MS.gene93733:CDS | 35.0% | |
| TGGTGGTCCAGATAAAAATT+TGG | + | chr4.2:28708-28727 | MS.gene93733:CDS | 35.0% | |
| TGTATCCATGTTAACACCAT+TGG | - | chr4.2:28128-28147 | None:intergenic | 35.0% | |
| TGTTACTACCTATAGGCAAA+TGG | - | chr4.2:26945-26964 | None:intergenic | 35.0% | |
| TTAAGAGCTCATCGAATGAA+AGG | - | chr4.2:27246-27265 | None:intergenic | 35.0% | |
| TTACCTTGAAGAATGCCAAA+CGG | - | chr4.2:30037-30056 | None:intergenic | 35.0% | |
| TTATACAATTCTGGCAAGAG+TGG | + | chr4.2:29492-29511 | MS.gene93733:CDS | 35.0% | |
| TTCAAAACCATGATGTTTGG+TGG | + | chr4.2:28691-28710 | MS.gene93733:CDS | 35.0% | |
| TTTATGGTATGCAACTTCAC+TGG | - | chr4.2:29771-29790 | None:intergenic | 35.0% | |
| TTTCCTTCACCAGATTCAAA+GGG | + | chr4.2:27973-27992 | MS.gene93733:CDS | 35.0% | |
| ! | ATAATGGAGGGAAACTAAGA+AGG | + | chr4.2:27918-27937 | MS.gene93733:CDS | 35.0% |
| ! | CTTCTTCTGAAGATTATTGG+TGG | - | chr4.2:29133-29152 | None:intergenic | 35.0% |
| ! | TCTTGCAAATTGGTTCCTAT+CGG | - | chr4.2:29710-29729 | None:intergenic | 35.0% |
| ! | TCTTTTGCAATTTGAATGGC+AGG | - | chr4.2:28976-28995 | None:intergenic | 35.0% |
| ! | TGAATTGGTGATAGACAGAT+CGG | - | chr4.2:27945-27964 | None:intergenic | 35.0% |
| ! | TGGAGGACCAAATTTTTATC+TGG | - | chr4.2:28718-28737 | None:intergenic | 35.0% |
| ! | TGGTTTTCACTTTCTGTTAG+TGG | - | chr4.2:29944-29963 | None:intergenic | 35.0% |
| ! | TTTGAGATTTCGATGGTGTA+AGG | + | chr4.2:27481-27500 | MS.gene93733:intron | 35.0% |
| !! | CTAATATCAGCTTGCTACTT+TGG | - | chr4.2:30078-30097 | None:intergenic | 35.0% |
| !! | GGTTGGAATAAAAGCATTGA+AGG | + | chr4.2:28774-28793 | MS.gene93733:CDS | 35.0% |
| !!! | AATAGGCAGACTTTTGGTTT+TGG | - | chr4.2:28738-28757 | None:intergenic | 35.0% |
| !!! | ACCAAACATCATGGTTTTGA+AGG | - | chr4.2:28692-28711 | None:intergenic | 35.0% |
| !!! | GGATTGTTTTGATGAACTCT+TGG | - | chr4.2:29112-29131 | None:intergenic | 35.0% |
| AAAGCCTTCGACAATAATGG+AGG | + | chr4.2:27905-27924 | MS.gene93733:CDS | 40.0% | |
| AAAGTGAAAACCACCTCAAG+TGG | + | chr4.2:29951-29970 | MS.gene93733:CDS | 40.0% | |
| AAATAGCAGAGTTGTGTTGG+CGG | + | chr4.2:27744-27763 | MS.gene93733:intron | 40.0% | |
| AAGCGAACATCAACTAACAC+TGG | + | chr4.2:28451-28470 | MS.gene93733:CDS | 40.0% | |
| AATAGCCAAACTAATGGGAC+TGG | + | chr4.2:28528-28547 | MS.gene93733:CDS | 40.0% | |
| AATGGATAGAGGAAGCAACT+TGG | + | chr4.2:28000-28019 | MS.gene93733:CDS | 40.0% | |
| ACAAGAATCGGCCAATGATT+TGG | + | chr4.2:29521-29540 | MS.gene93733:CDS | 40.0% | |
| ACATAACAGTGGCACAGTAA+AGG | + | chr4.2:28879-28898 | MS.gene93733:CDS | 40.0% | |
| ACTACCTATAGGCAAATGGT+AGG | - | chr4.2:26941-26960 | None:intergenic | 40.0% | |
| ATTGCATGTGGGATTTAGGT+TGG | + | chr4.2:30347-30366 | MS.gene93733:CDS | 40.0% | |
| CAATCCTACCATTTGCCTAT+AGG | + | chr4.2:26934-26953 | MS.gene93733:CDS | 40.0% | |
| CAATTATCTCCAAAGACGGA+GGG | + | chr4.2:29073-29092 | MS.gene93733:CDS | 40.0% | |
| CACTTTCTGTTAGTGGTTGT+TGG | - | chr4.2:29937-29956 | None:intergenic | 40.0% | |
| CGTTTATCTGTACAAGAGAG+AGG | - | chr4.2:28054-28073 | None:intergenic | 40.0% | |
| CTATAGGCAAATGGTAGGAT+TGG | - | chr4.2:26936-26955 | None:intergenic | 40.0% | |
| GTCAGTGCTTACCAAATCAT+TGG | - | chr4.2:29535-29554 | None:intergenic | 40.0% | |
| GTTTCCTTCACCAGATTCAA+AGG | + | chr4.2:27972-27991 | MS.gene93733:CDS | 40.0% | |
| TACCTTGAAGAATGCCAAAC+GGG | - | chr4.2:30036-30055 | None:intergenic | 40.0% | |
| TCAATTATCTCCAAAGACGG+AGG | + | chr4.2:29072-29091 | MS.gene93733:CDS | 40.0% | |
| TCACCACGTGATATCTTGAA+CGG | - | chr4.2:29186-29205 | None:intergenic | 40.0% | |
| TGAATGGAGCAGACCAAAAA+AGG | + | chr4.2:29427-29446 | MS.gene93733:CDS | 40.0% | |
| TGTTTGTTTGCTCTTCAGTG+TGG | - | chr4.2:28632-28651 | None:intergenic | 40.0% | |
| TTCAGACTAAACATCCCGTT+TGG | + | chr4.2:30019-30038 | MS.gene93733:CDS | 40.0% | |
| TTCCTTCACCAGATTCAAAG+GGG | + | chr4.2:27974-27993 | MS.gene93733:CDS | 40.0% | |
| TTGTTGTCAACCGAGAAAGT+TGG | - | chr4.2:28367-28386 | None:intergenic | 40.0% | |
| TTTCCCTCCATTATTGTCGA+AGG | - | chr4.2:27912-27931 | None:intergenic | 40.0% | |
| ! | AAGCCTTCGACAATAATGGA+GGG | + | chr4.2:27906-27925 | MS.gene93733:CDS | 40.0% |
| ! | ATTTTTGTTCTGTGCTTGCG+AGG | - | chr4.2:28254-28273 | None:intergenic | 40.0% |
| ! | CAGAGTAATAGGCAGACTTT+TGG | - | chr4.2:28744-28763 | None:intergenic | 40.0% |
| ! | GTTTAGTTTCTGTGCACCTT+TGG | - | chr4.2:28083-28102 | None:intergenic | 40.0% |
| ! | TCTACATTAATTGAGGGTGC+TGG | + | chr4.2:27161-27180 | MS.gene93733:intron | 40.0% |
| ! | TGCAGGTTAGTTCCAGAAAT+GGG | + | chr4.2:27801-27820 | MS.gene93733:intron | 40.0% |
| ! | TGTATTTGTTGACCCTCTGT+AGG | - | chr4.2:27678-27697 | None:intergenic | 40.0% |
| ! | TTACTGTGCCACTGTTATGT+GGG | - | chr4.2:28879-28898 | None:intergenic | 40.0% |
| ! | TTTACTGTGCCACTGTTATG+TGG | - | chr4.2:28880-28899 | None:intergenic | 40.0% |
| !! | AAACCACCTCAAGTGGATTT+TGG | + | chr4.2:29958-29977 | MS.gene93733:CDS | 40.0% |
| !! | ATTGATTTGGAAGAGTCGCT+TGG | + | chr4.2:28187-28206 | MS.gene93733:CDS | 40.0% |
| !! | ATTTCTGGAACTAACCTGCA+GGG | - | chr4.2:27801-27820 | None:intergenic | 40.0% |
| !! | GAGTAGCAAAGTTGATGTTG+AGG | + | chr4.2:30270-30289 | MS.gene93733:CDS | 40.0% |
| ACACCAAGCAAACCTACAGA+GGG | + | chr4.2:27663-27682 | MS.gene93733:CDS | 45.0% | |
| ACTATTAGAAGAGGAGGAGG+AGG | + | chr4.2:28282-28301 | MS.gene93733:CDS | 45.0% | |
| AGCAGCAAGCTCTCAATATG+TGG | - | chr4.2:28105-28124 | None:intergenic | 45.0% | |
| AGGAGTTCAGGAAGACAGAA+TGG | + | chr4.2:29880-29899 | MS.gene93733:intron | 45.0% | |
| ATAGAGGAAGCAACTTGGAC+AGG | + | chr4.2:28005-28024 | MS.gene93733:CDS | 45.0% | |
| ATCCCGTTTGGCATTCTTCA+AGG | + | chr4.2:30031-30050 | MS.gene93733:CDS | 45.0% | |
| ATCTGGACCACCAAACATCA+TGG | - | chr4.2:28701-28720 | None:intergenic | 45.0% | |
| CAAAGGGGAAGAATGGATAG+AGG | + | chr4.2:27989-28008 | MS.gene93733:CDS | 45.0% | |
| CACACTATTAGAAGAGGAGG+AGG | + | chr4.2:28279-28298 | MS.gene93733:CDS | 45.0% | |
| CACCTCAGACTCAGAGTAAT+AGG | - | chr4.2:28755-28774 | None:intergenic | 45.0% | |
| CCAGATTCAAAGGGGAAGAA+TGG | + | chr4.2:27982-28001 | MS.gene93733:CDS | 45.0% | |
| CCATTCTTCCCCTTTGAATC+TGG | - | chr4.2:27985-28004 | None:intergenic | 45.0% | |
| CTATTACTCTGAGTCTGAGG+TGG | + | chr4.2:28753-28772 | MS.gene93733:CDS | 45.0% | |
| CTTGGTTAAGAAGCTGAACG+AGG | + | chr4.2:30213-30232 | MS.gene93733:CDS | 45.0% | |
| GACAACCTTCCTGAGAAGAA+GGG | + | chr4.2:28550-28569 | MS.gene93733:CDS | 45.0% | |
| GAGGATGGAGAAAATGCAAC+TGG | + | chr4.2:28336-28355 | MS.gene93733:CDS | 45.0% | |
| GCCTGACATAGATTGCATGT+GGG | + | chr4.2:30336-30355 | MS.gene93733:CDS | 45.0% | |
| GCGTGTAAGGAAAGAACGAA+TGG | + | chr4.2:26879-26898 | MS.gene93733:CDS | 45.0% | |
| GGAGTTCAGGAAGACAGAAT+GGG | + | chr4.2:29881-29900 | MS.gene93733:intron | 45.0% | |
| GGGAAAGCCTTCGACAATAA+TGG | + | chr4.2:27902-27921 | MS.gene93733:CDS | 45.0% | |
| GTTGTCCAGTCCCATTAGTT+TGG | - | chr4.2:28536-28555 | None:intergenic | 45.0% | |
| TAAGAAGCTGAACGAGGACA+TGG | + | chr4.2:30219-30238 | MS.gene93733:CDS | 45.0% | |
| TACACCAAGCAAACCTACAG+AGG | + | chr4.2:27662-27681 | MS.gene93733:CDS | 45.0% | |
| TAGTTCCAGAAATGGGGAGA+CGG | + | chr4.2:27808-27827 | MS.gene93733:CDS | 45.0% | |
| TCATCCAAACACTCTGCCAA+AGG | + | chr4.2:28595-28614 | MS.gene93733:CDS | 45.0% | |
| TCCCACATGCAATCTATGTC+AGG | - | chr4.2:30340-30359 | None:intergenic | 45.0% | |
| TCGTGACCAAAATCCACTTG+AGG | - | chr4.2:29967-29986 | None:intergenic | 45.0% | |
| TCTGTACAAGAGAGAGGGTA+TGG | - | chr4.2:28048-28067 | None:intergenic | 45.0% | |
| TGAAGACTGGCAGTAAGGTA+GGG | - | chr4.2:27367-27386 | None:intergenic | 45.0% | |
| TGACCAAAATCCACTTGAGG+TGG | - | chr4.2:29964-29983 | None:intergenic | 45.0% | |
| TGCCGACATTTCAAACCAGA+TGG | + | chr4.2:28480-28499 | MS.gene93733:CDS | 45.0% | |
| TGCCTATTACTCTGAGTCTG+AGG | + | chr4.2:28750-28769 | MS.gene93733:CDS | 45.0% | |
| TGTCGAAGGCTTTCCCATAT+GGG | - | chr4.2:27898-27917 | None:intergenic | 45.0% | |
| TTCCCCTTTGAATCTGGTGA+AGG | - | chr4.2:27979-27998 | None:intergenic | 45.0% | |
| TTCTCGATGATCTGCGTGTA+AGG | + | chr4.2:26866-26885 | MS.gene93733:CDS | 45.0% | |
| TTGTCGAAGGCTTTCCCATA+TGG | - | chr4.2:27899-27918 | None:intergenic | 45.0% | |
| ! | AGCATTGAAGGGCTTTGACA+AGG | + | chr4.2:28786-28805 | MS.gene93733:CDS | 45.0% |
| ! | CAGAGATCAGTAAAGAGTGC+AGG | + | chr4.2:27851-27870 | MS.gene93733:CDS | 45.0% |
| ! | CTGCAGGTTAGTTCCAGAAA+TGG | + | chr4.2:27800-27819 | MS.gene93733:intron | 45.0% |
| ! | CTGCTCCAATGGTGTTAACA+TGG | + | chr4.2:28120-28139 | MS.gene93733:CDS | 45.0% |
| ! | GCAGGTTAGTTCCAGAAATG+GGG | + | chr4.2:27802-27821 | MS.gene93733:intron | 45.0% |
| ! | GGCCATCTGGTTTGAAATGT+CGG | - | chr4.2:28485-28504 | None:intergenic | 45.0% |
| ! | GTTTCCTTTGGCAGAGTGTT+TGG | - | chr4.2:28602-28621 | None:intergenic | 45.0% |
| ! | GTTTGGAATCCTTCCCTTGT+CGG | - | chr4.2:28506-28525 | None:intergenic | 45.0% |
| !! | AGCAGAATCGTTGATGATGC+TGG | - | chr4.2:28812-28831 | None:intergenic | 45.0% |
| !! | ATGTTGAGGTGATGATGGGA+AGG | + | chr4.2:28842-28861 | MS.gene93733:CDS | 45.0% |
| !! | CATTTCTGGAACTAACCTGC+AGG | - | chr4.2:27802-27821 | None:intergenic | 45.0% |
| !! | TTGGTAAGCACTGACTGAGT+AGG | + | chr4.2:29540-29559 | MS.gene93733:intron | 45.0% |
| !!! | AGGATCCAACAGCCACTTTT+TGG | - | chr4.2:28672-28691 | None:intergenic | 45.0% |
| !!! | AGGCAGACTTTTGGTTTTGG+AGG | - | chr4.2:28735-28754 | None:intergenic | 45.0% |
| ACGCCGTTCAAGATATCACG+TGG | + | chr4.2:29180-29199 | MS.gene93733:CDS | 50.0% | |
| ACGTGATATCTTGAACGGCG+TGG | - | chr4.2:29181-29200 | None:intergenic | 50.0% | |
| ACTGGCACGTCCAACTTTCT+CGG | + | chr4.2:28354-28373 | MS.gene93733:CDS | 50.0% | |
| AGAAGATGAGAGGAGGAGGA+TGG | + | chr4.2:28321-28340 | MS.gene93733:CDS | 50.0% | |
| AGAGTCGCTTGGAATGCTAG+TGG | + | chr4.2:28198-28217 | MS.gene93733:CDS | 50.0% | |
| AGGAGGAGGTAGAAGATGAG+AGG | + | chr4.2:28311-28330 | MS.gene93733:CDS | 50.0% | |
| AGGAGGTAGAAGATGAGAGG+AGG | + | chr4.2:28314-28333 | MS.gene93733:CDS | 50.0% | |
| AGGTAGAAGATGAGAGGAGG+AGG | + | chr4.2:28317-28336 | MS.gene93733:CDS | 50.0% | |
| ATATCTTGAACGGCGTGGGT+TGG | - | chr4.2:29176-29195 | None:intergenic | 50.0% | |
| ATTCACCGTCTCCCCATTTC+TGG | - | chr4.2:27816-27835 | None:intergenic | 50.0% | |
| CAGGATCACCCACATAACAG+TGG | + | chr4.2:28868-28887 | MS.gene93733:CDS | 50.0% | |
| CATGCTCAAGCATCTTAGGC+AGG | - | chr4.2:30300-30319 | None:intergenic | 50.0% | |
| CATTTCTCTCCCTCCGTCTT+TGG | - | chr4.2:29085-29104 | None:intergenic | 50.0% | |
| CCTTCCTGAGAAGAAGGGTT+CGG | + | chr4.2:28555-28574 | MS.gene93733:CDS | 50.0% | |
| CGTGATATCTTGAACGGCGT+GGG | - | chr4.2:29180-29199 | None:intergenic | 50.0% | |
| CTTCCTGAGAAGAAGGGTTC+GGG | + | chr4.2:28556-28575 | MS.gene93733:CDS | 50.0% | |
| GAAAAGAAAGGGGATACGGC+AGG | + | chr4.2:30117-30136 | MS.gene93733:CDS | 50.0% | |
| GAAATGGGGAGACGGTGAAT+TGG | + | chr4.2:27816-27835 | MS.gene93733:CDS | 50.0% | |
| GAAGACTGGCAGTAAGGTAG+GGG | - | chr4.2:27366-27385 | None:intergenic | 50.0% | |
| GAGAGTGAAGACTGGCAGTA+AGG | - | chr4.2:27372-27391 | None:intergenic | 50.0% | |
| GCAAGATCAAGCTGTTCCTG+AGG | + | chr4.2:29724-29743 | MS.gene93733:CDS | 50.0% | |
| GCCAGTCTTCACTCTCATCA+CGG | + | chr4.2:27376-27395 | MS.gene93733:intron | 50.0% | |
| GGACAACCTTCCTGAGAAGA+AGG | + | chr4.2:28549-28568 | MS.gene93733:CDS | 50.0% | |
| GGCCTGACATAGATTGCATG+TGG | + | chr4.2:30335-30354 | MS.gene93733:CDS | 50.0% | |
| GTGAAGACTGGCAGTAAGGT+AGG | - | chr4.2:27368-27387 | None:intergenic | 50.0% | |
| TACCAAGCTGTGCAACCGAT+AGG | + | chr4.2:29692-29711 | MS.gene93733:CDS | 50.0% | |
| TCAAACCAGATGGCCGACAA+GGG | + | chr4.2:28490-28509 | MS.gene93733:CDS | 50.0% | |
| TCCGTGATGAGAGTGAAGAC+TGG | - | chr4.2:27380-27399 | None:intergenic | 50.0% | |
| TTACCCGAACCCTTCTTCTC+AGG | - | chr4.2:28562-28581 | None:intergenic | 50.0% | |
| TTCAAACCAGATGGCCGACA+AGG | + | chr4.2:28489-28508 | MS.gene93733:CDS | 50.0% | |
| ! | CGGTGAATTGGTCTAGCAGA+AGG | + | chr4.2:27828-27847 | MS.gene93733:CDS | 50.0% |
| ! | GAAGCTAGTGGTAGAGCATC+TGG | + | chr4.2:29390-29409 | MS.gene93733:CDS | 50.0% |
| ! | TACTCTGAGTCTGAGGTGGT+TGG | + | chr4.2:28757-28776 | MS.gene93733:CDS | 50.0% |
| ! | TGACCCTCTGTAGGTTTGCT+TGG | - | chr4.2:27669-27688 | None:intergenic | 50.0% |
| ! | TTCCTATCGGTTGCACAGCT+TGG | - | chr4.2:29697-29716 | None:intergenic | 50.0% |
| !! | GGTGATGATGGGAAGGAAAC+AGG | + | chr4.2:28849-28868 | MS.gene93733:CDS | 50.0% |
| !! | TGTGGTGCTGCTGTTTCCTT+TGG | - | chr4.2:28614-28633 | None:intergenic | 50.0% |
| !! | TTGAGAGCTTGCTGCTCCAA+TGG | + | chr4.2:28109-28128 | MS.gene93733:CDS | 50.0% |
| AATCCCTCATGTGCTGCCTC+AGG | - | chr4.2:29743-29762 | None:intergenic | 55.0% | |
| AGAAGAGGAGGAGGAGGAGA+AGG | + | chr4.2:28288-28307 | MS.gene93733:CDS | 55.0% | |
| CCGAACCCTTCTTCTCAGGA+AGG | - | chr4.2:28558-28577 | None:intergenic | 55.0% | |
| GTTCCTGAGGCAGCACATGA+GGG | + | chr4.2:29737-29756 | MS.gene93733:CDS | 55.0% | |
| TGTTCCTGAGGCAGCACATG+AGG | + | chr4.2:29736-29755 | MS.gene93733:CDS | 55.0% | |
| ! | CTAACCTGCAGGGCATCACA+TGG | - | chr4.2:27791-27810 | None:intergenic | 55.0% |
| ACCAGATGGCCGACAAGGGA+AGG | + | chr4.2:28494-28513 | MS.gene93733:CDS | 60.0% | |
| AGAGGAGGAGGAGGAGAAGG+AGG | + | chr4.2:28291-28310 | MS.gene93733:CDS | 60.0% | |
| GTGTCCATGTGATGCCCTGC+AGG | + | chr4.2:27784-27803 | MS.gene93733:intron | 60.0% | |
| TCCTTCCCTTGTCGGCCATC+TGG | - | chr4.2:28498-28517 | None:intergenic | 60.0% | |
| GGAGGAGGAGAAGGAGGAGG+AGG | + | chr4.2:28297-28316 | MS.gene93733:CDS | 65.0% | |
| GGAGGAGGAGGAGAAGGAGG+AGG | + | chr4.2:28294-28313 | MS.gene93733:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 26835 | 30489 | 26835 | ID=MS.gene93733 |
| chr4.2 | mRNA | 26835 | 30489 | 26835 | ID=MS.gene93733.t1;Parent=MS.gene93733 |
| chr4.2 | exon | 26835 | 26955 | 26835 | ID=MS.gene93733.t1.exon1;Parent=MS.gene93733.t1 |
| chr4.2 | CDS | 26835 | 26955 | 26835 | ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1 |
| chr4.2 | exon | 27651 | 27712 | 27651 | ID=MS.gene93733.t1.exon2;Parent=MS.gene93733.t1 |
| chr4.2 | CDS | 27651 | 27712 | 27651 | ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1 |
| chr4.2 | exon | 27806 | 29542 | 27806 | ID=MS.gene93733.t1.exon3;Parent=MS.gene93733.t1 |
| chr4.2 | CDS | 27806 | 29542 | 27806 | ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1 |
| chr4.2 | exon | 29689 | 29803 | 29689 | ID=MS.gene93733.t1.exon4;Parent=MS.gene93733.t1 |
| chr4.2 | CDS | 29689 | 29803 | 29689 | ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1 |
| chr4.2 | exon | 29882 | 30489 | 29882 | ID=MS.gene93733.t1.exon5;Parent=MS.gene93733.t1 |
| chr4.2 | CDS | 29882 | 30489 | 29882 | ID=cds.MS.gene93733.t1;Parent=MS.gene93733.t1 |
| Gene Sequence |
| Protein sequence |
