AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94011

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94011.t1 MTR_3g035480 75.626 599 83 4 1 543 663 1254 0.0 868
MS.gene94011.t1 MTR_3g035940 84.272 515 74 1 1 515 663 1170 0.0 851
MS.gene94011.t1 MTR_0002s0110 83.689 515 77 2 1 515 663 1170 0.0 849
MS.gene94011.t1 MTR_3g035960 84.526 517 77 2 1 515 661 1176 0.0 841
MS.gene94011.t1 MTR_0002s0090 83.689 515 76 2 1 515 663 1169 0.0 823
MS.gene94011.t1 MTR_3g035500 83.689 515 76 2 1 515 663 1169 0.0 823
MS.gene94011.t1 MTR_0002s0120 83.594 384 56 2 1 384 446 822 0.0 632
MS.gene94011.t1 MTR_3g033860 58.994 517 203 4 1 514 662 1172 0.0 573
MS.gene94011.t1 MTR_3g028040 58.333 540 211 5 1 537 662 1190 0.0 563
MS.gene94011.t1 MTR_3g034380 60.348 517 196 4 1 514 661 1171 0.0 562
MS.gene94011.t1 MTR_4g050410 58.767 519 198 7 1 514 660 1167 0.0 555
MS.gene94011.t1 MTR_3g032200 57.915 518 202 8 1 514 665 1170 0.0 549
MS.gene94011.t1 MTR_3g034460 58.607 517 204 5 1 514 646 1155 0.0 545
MS.gene94011.t1 MTR_3g032370 57.143 518 209 5 1 514 660 1168 1.96e-180 544
MS.gene94011.t1 MTR_3g032500 57.143 518 208 6 1 514 666 1173 4.55e-176 530
MS.gene94011.t1 MTR_1g008240 58.447 515 196 7 1 514 647 1144 4.64e-176 531
MS.gene94011.t1 MTR_3g034430 60.232 518 196 5 1 514 662 1173 5.05e-176 531
MS.gene94011.t1 MTR_3g031940 57.143 518 208 6 1 514 665 1172 1.71e-175 529
MS.gene94011.t1 MTR_3g032800 57.996 519 202 7 1 514 662 1169 5.54e-175 527
MS.gene94011.t1 MTR_3g032760 58.880 518 197 9 1 514 662 1167 2.91e-174 526
MS.gene94011.t1 MTR_3g032960 57.529 518 206 6 1 514 662 1169 1.15e-172 522
MS.gene94011.t1 MTR_3g030980 57.087 515 206 7 1 511 662 1165 5.51e-169 513
MS.gene94011.t1 MTR_2g063777 55.684 519 213 10 1 514 659 1165 3.62e-168 510
MS.gene94011.t1 MTR_3g435740 55.792 518 214 7 1 514 706 1212 3.83e-168 511
MS.gene94011.t1 MTR_8g030860 56.589 516 205 8 1 511 668 1169 4.98e-168 508
MS.gene94011.t1 MTR_3g030960 55.985 518 212 8 1 514 662 1167 2.02e-167 508
MS.gene94011.t1 MTR_3g033110 56.505 515 209 8 4 514 644 1147 3.40e-166 504
MS.gene94011.t1 MTR_3g036050 56.395 516 209 6 1 514 273 774 1.15e-164 493
MS.gene94011.t1 MTR_3g435720 54.440 518 221 7 1 514 662 1168 1.43e-163 498
MS.gene94011.t1 MTR_3g033380 56.455 519 191 8 1 515 666 1153 2.05e-162 495
MS.gene94011.t1 MTR_0083s0120 51.163 516 192 6 1 514 211 668 2.25e-145 439
MS.gene94011.t1 MTR_3g033240 49.031 516 189 7 1 514 665 1108 1.83e-139 434
MS.gene94011.t1 MTR_3g034650 47.081 531 196 11 1 515 186 647 6.22e-131 400
MS.gene94011.t1 MTR_3g033130 46.942 556 191 10 3 514 639 1134 7.83e-127 401
MS.gene94011.t1 MTR_8g106550 48.515 505 184 8 1 501 598 1030 1.18e-123 390
MS.gene94011.t1 MTR_3g032110 43.068 541 242 11 1 514 710 1211 1.61e-113 365
MS.gene94011.t1 MTR_3g032340 43.068 541 242 11 1 514 713 1214 6.45e-113 364
MS.gene94011.t1 MTR_3g032150 45.106 521 215 10 1 514 660 1116 6.06e-112 361
MS.gene94011.t1 MTR_3g033080 60.526 304 111 4 1 303 665 960 1.53e-108 346
MS.gene94011.t1 MTR_0137s0070 40.219 547 245 12 1 514 88 585 4.33e-106 332
MS.gene94011.t1 MTR_3g014080 40.219 547 245 12 1 514 670 1167 1.18e-101 333
MS.gene94011.t1 MTR_0137s0070 39.692 519 234 10 1 488 88 558 2.67e-100 316
MS.gene94011.t1 MTR_3g014080 39.692 519 234 10 1 488 670 1140 7.77e-96 317
MS.gene94011.t1 MTR_4g019360 38.686 548 250 12 1 519 585 1075 3.54e-94 312
MS.gene94011.t1 MTR_0603s0010 38.869 548 249 10 1 519 723 1213 1.03e-93 311
MS.gene94011.t1 MTR_7g078790 61.328 256 97 2 1 255 649 903 1.51e-93 305
MS.gene94011.t1 MTR_3g014040 40.113 531 252 13 1 514 655 1136 4.22e-93 309
MS.gene94011.t1 MTR_3g435220 37.843 547 267 12 1 519 621 1122 2.88e-91 303
MS.gene94011.t1 MTR_3g007190 38.477 499 229 9 21 490 537 986 1.47e-90 300
MS.gene94011.t1 MTR_0137s0010 39.347 521 238 13 1 514 209 658 3.51e-89 290
MS.gene94011.t1 MTR_8g446950 39.162 549 247 15 1 514 686 1182 1.87e-87 294
MS.gene94011.t1 MTR_6g084550 64.889 225 79 0 1 225 647 871 8.17e-84 278
MS.gene94011.t1 MTR_3g014510 36.745 596 269 16 1 512 665 1236 9.99e-84 284
MS.gene94011.t1 MTR_3g011620 38.165 545 242 15 1 511 667 1150 2.07e-83 282
MS.gene94011.t1 MTR_3g020620 41.727 417 186 9 1 412 811 1175 3.35e-82 278
MS.gene94011.t1 MTR_5g037590 38.716 545 243 13 1 514 623 1107 1.07e-81 277
MS.gene94011.t1 MTR_1g045960 37.660 547 264 14 1 519 631 1128 2.35e-81 276
MS.gene94011.t1 MTR_3g014320 33.821 615 286 19 1 512 664 1260 5.59e-74 256
MS.gene94011.t1 MTR_3g020890 35.169 563 301 16 1 532 653 1182 4.19e-73 253
MS.gene94011.t1 MTR_1g037610 34.194 620 288 18 1 512 665 1272 5.08e-73 253
MS.gene94011.t1 MTR_1g037610 32.165 485 222 14 103 511 866 1319 8.40e-42 161
MS.gene94011.t1 MTR_0005s0200 35.805 472 248 11 1 463 678 1103 1.38e-71 248
MS.gene94011.t1 MTR_3g436130 66.867 166 52 2 1 165 28 191 1.60e-67 216
MS.gene94011.t1 MTR_3g027420 36.842 475 246 15 1 437 652 1110 2.24e-66 233
MS.gene94011.t1 MTR_3g024460 35.205 463 240 14 1 421 268 712 3.56e-62 218
MS.gene94011.t1 MTR_3g014360 31.848 606 276 19 1 514 649 1209 1.13e-61 220
MS.gene94011.t1 MTR_3g071070 33.333 489 248 13 1 486 441 854 1.87e-61 218
MS.gene94011.t1 MTR_3g019000 35.632 435 226 13 1 394 661 1082 2.54e-61 219
MS.gene94011.t1 MTR_3g071130 33.333 489 248 13 1 486 646 1059 1.67e-60 216
MS.gene94011.t1 MTR_2g038760 33.146 534 289 18 1 511 680 1168 9.76e-59 211
MS.gene94011.t1 MTR_2g014840 35.484 496 279 16 1 488 658 1120 3.14e-58 210
MS.gene94011.t1 MTR_3g014390 32.097 620 275 22 1 514 662 1241 4.18e-58 209
MS.gene94011.t1 MTR_3g014390 30.081 492 240 15 102 528 853 1305 1.65e-30 127
MS.gene94011.t1 MTR_1g047800 36.650 412 219 14 1 393 654 1042 1.84e-57 207
MS.gene94011.t1 MTR_3g022400 34.851 505 245 17 1 461 645 1109 1.06e-56 205
MS.gene94011.t1 MTR_0267s0070 49.398 249 114 4 1 242 670 913 2.19e-56 205
MS.gene94011.t1 MTR_3g022400 35.020 494 231 19 1 461 645 1081 4.34e-56 203
MS.gene94011.t1 MTR_2g039090 31.985 544 285 18 1 512 653 1143 2.44e-55 201
MS.gene94011.t1 MTR_3g022870 34.553 492 263 15 1 448 648 1124 4.76e-55 201
MS.gene94011.t1 MTR_5g095910 32.028 562 306 20 1 532 662 1177 5.08e-55 201
MS.gene94011.t1 MTR_3g022870 34.553 492 263 15 1 448 612 1088 5.76e-55 200
MS.gene94011.t1 MTR_3g022940 33.402 485 248 14 1 421 648 1121 2.32e-54 198
MS.gene94011.t1 MTR_3g019040 34.334 533 277 18 1 523 663 1132 2.43e-54 198
MS.gene94011.t1 MTR_3g022570 34.524 504 248 16 1 461 686 1150 2.61e-54 198
MS.gene94011.t1 MTR_2g038930 31.835 534 296 18 1 511 506 994 6.75e-54 197
MS.gene94011.t1 MTR_8g038590 32.496 557 299 21 1 532 674 1178 9.31e-54 197
MS.gene94011.t1 MTR_3g021100 34.702 487 253 17 1 440 656 1124 1.35e-53 196
MS.gene94011.t1 MTR_3g027250 34.186 430 233 13 1 391 649 1067 1.84e-53 196
MS.gene94011.t1 MTR_3g022060 34.989 463 246 18 1 421 549 998 8.13e-53 194
MS.gene94011.t1 MTR_2g038900 31.648 534 297 18 1 511 669 1157 3.09e-52 192
MS.gene94011.t1 MTR_3g021380 32.922 486 249 15 1 421 638 1111 3.63e-51 189
MS.gene94011.t1 MTR_3g021170 32.500 520 289 14 1 513 651 1115 7.06e-51 188
MS.gene94011.t1 MTR_3g018970 36.316 380 186 12 1 373 116 446 7.76e-51 182
MS.gene94011.t1 MTR_3g023030 33.539 486 257 18 1 438 662 1129 1.53e-50 187
MS.gene94011.t1 MTR_3g022920 34.653 505 246 17 1 461 641 1105 1.60e-50 187
MS.gene94011.t1 MTR_3g023030 33.539 486 257 18 1 438 628 1095 1.77e-50 187
MS.gene94011.t1 MTR_3g021340 32.068 527 276 15 1 513 650 1108 4.93e-50 186
MS.gene94011.t1 MTR_8g038570 33.149 543 273 20 1 512 679 1162 9.82e-49 182
MS.gene94011.t1 MTR_3g436140 56.831 183 74 1 302 484 1 178 2.82e-48 166
MS.gene94011.t1 MTR_3g021400 32.645 533 274 18 1 513 640 1107 3.13e-48 180
MS.gene94011.t1 MTR_7g021000 33.496 409 242 13 1 391 659 1055 9.40e-48 179
MS.gene94011.t1 MTR_1643s0010 39.759 249 134 6 1 246 1 236 4.82e-47 167
MS.gene94011.t1 MTR_3g027200 32.515 489 273 16 1 448 667 1139 8.99e-47 176
MS.gene94011.t1 MTR_3g022790 34.280 493 272 22 1 486 658 1105 2.99e-46 174
MS.gene94011.t1 MTR_3g022790 26.975 367 210 13 118 437 985 1340 1.06e-11 68.6
MS.gene94011.t1 MTR_3g018930 32.051 468 249 16 1 421 665 1110 4.96e-46 174
MS.gene94011.t1 MTR_3g022130 31.317 463 263 12 1 421 636 1085 7.11e-46 173
MS.gene94011.t1 MTR_3g025360 34.325 437 233 14 1 394 677 1102 1.11e-45 173
MS.gene94011.t1 MTR_3g018980 32.245 490 269 13 1 486 663 1093 2.19e-45 172
MS.gene94011.t1 MTR_6g084540 45.726 234 84 4 302 520 1 206 2.20e-45 160
MS.gene94011.t1 MTR_3g435210 34.509 397 201 14 1 366 469 837 3.21e-45 171
MS.gene94011.t1 MTR_3g435210 31.200 375 174 11 170 514 539 859 4.15e-26 113
MS.gene94011.t1 MTR_3g070590 29.918 488 224 13 1 486 646 1017 3.82e-45 171
MS.gene94011.t1 MTR_3g035810 41.107 253 130 6 1 246 632 872 9.91e-45 170
MS.gene94011.t1 MTR_3g021330 33.787 367 178 9 1 341 243 570 1.77e-44 166
MS.gene94011.t1 MTR_0425s0020 31.325 581 302 21 1 513 672 1223 1.78e-43 166
MS.gene94011.t1 MTR_3g015260 31.637 452 236 14 1 398 664 1096 2.83e-43 166
MS.gene94011.t1 MTR_3g022600 33.149 543 295 26 1 513 679 1183 1.26e-42 164
MS.gene94011.t1 MTR_3g022300 33.024 539 288 24 1 509 672 1167 1.05e-41 161
MS.gene94011.t1 MTR_3g014460 34.367 387 203 10 153 512 3 365 1.58e-41 155
MS.gene94011.t1 MTR_3g027470 30.963 436 238 16 1 421 567 954 5.68e-41 159
MS.gene94011.t1 MTR_3g018980 40.000 245 130 4 1 244 663 891 6.31e-41 158
MS.gene94011.t1 MTR_3g015260 40.081 247 131 5 1 246 664 894 1.62e-40 157
MS.gene94011.t1 MTR_3g022230 32.692 468 249 20 1 442 662 1089 4.47e-38 150
MS.gene94011.t1 MTR_7g021000 41.837 196 105 4 1 193 659 848 4.79e-38 149
MS.gene94011.t1 MTR_3g014470 44.974 189 97 4 1 187 615 798 2.31e-35 141
MS.gene94011.t1 MTR_3g022740 36.820 239 113 6 1 236 384 587 4.03e-35 140
MS.gene94011.t1 MTR_3g022240 38.136 236 126 7 8 239 4 223 5.58e-35 135
MS.gene94011.t1 MTR_2g014720 29.388 490 205 16 1 461 564 941 2.06e-34 139
MS.gene94011.t1 MTR_2g014730 30.567 494 216 19 1 459 609 1010 8.67e-34 137
MS.gene94011.t1 MTR_2g060700 34.440 241 132 5 1 240 423 638 2.04e-33 135
MS.gene94011.t1 MTR_1g022380 29.798 396 220 13 4 391 640 985 5.41e-30 125
MS.gene94011.t1 MTR_5g071823 28.900 391 222 14 5 388 645 986 1.41e-29 124
MS.gene94011.t1 MTR_5g071850 28.900 391 222 14 5 388 645 986 1.41e-29 124
MS.gene94011.t1 MTR_3g026660 28.814 472 254 16 1 414 634 1081 3.23e-29 123
MS.gene94011.t1 MTR_3g026660 28.814 472 254 16 1 414 691 1138 4.36e-29 122
MS.gene94011.t1 MTR_6g046620 29.694 458 263 21 2 442 588 1003 5.41e-29 122
MS.gene94011.t1 MTR_5g071310 34.503 342 198 12 5 343 613 931 8.40e-29 122
MS.gene94011.t1 MTR_5g040770 31.608 367 218 11 2 347 417 771 1.33e-28 121
MS.gene94011.t1 MTR_5g035480 29.730 407 228 16 1 402 635 988 1.58e-28 121
MS.gene94011.t1 MTR_1g023600 30.051 396 219 14 1 388 639 984 2.74e-28 120
MS.gene94011.t1 MTR_8g039260 31.127 408 194 18 2 387 207 549 3.85e-28 119
MS.gene94011.t1 MTR_5g035280 29.530 447 262 18 1 418 647 1069 6.63e-28 119
MS.gene94011.t1 MTR_5g071220 29.798 396 222 13 5 392 646 993 5.30e-27 116
MS.gene94011.t1 MTR_5g071670 32.727 385 226 15 4 381 638 996 5.53e-27 116
MS.gene94011.t1 MTR_5g071670 33.077 130 81 3 23 149 1130 1256 9.60e-11 65.5
MS.gene94011.t1 MTR_5g071220 29.798 396 222 13 5 392 646 993 8.49e-27 115
MS.gene94011.t1 MTR_0144s0060 28.054 442 244 15 2 383 634 1061 1.74e-26 115
MS.gene94011.t1 MTR_5g072340 33.967 368 202 15 4 360 647 984 1.76e-26 114
MS.gene94011.t1 MTR_6g046130 29.932 441 239 18 2 393 634 1053 2.00e-26 114
MS.gene94011.t1 MTR_5g071800 31.899 395 213 14 5 393 646 990 3.47e-26 114
MS.gene94011.t1 MTR_4g055630 29.111 450 244 15 5 450 649 1027 4.42e-26 113
MS.gene94011.t1 MTR_3g034010 59.341 91 37 0 302 392 6 96 7.80e-26 101
MS.gene94011.t1 MTR_5g035530 27.644 416 217 14 1 347 532 932 1.41e-25 112
MS.gene94011.t1 MTR_6g046480 28.194 454 256 16 2 443 637 1032 1.51e-25 112
MS.gene94011.t1 MTR_5g037450 26.337 486 253 18 1 460 657 1063 1.81e-25 111
MS.gene94011.t1 MTR_0230s0010 29.111 450 275 20 1 434 580 1001 2.42e-24 108
MS.gene94011.t1 MTR_5g072140 29.919 371 212 10 4 373 605 928 2.51e-24 108
MS.gene94011.t1 MTR_0511s0020 28.484 488 288 20 1 461 621 1074 4.78e-24 107
MS.gene94011.t1 MTR_5g071780 28.321 399 229 15 11 402 651 999 4.90e-24 107
MS.gene94011.t1 MTR_6g052455 28.602 472 278 20 1 449 529 964 7.84e-24 106
MS.gene94011.t1 MTR_4g126000 28.894 398 219 15 5 392 510 853 9.90e-24 106
MS.gene94011.t1 MTR_7g071940 30.894 369 202 17 5 343 638 983 1.20e-23 105
MS.gene94011.t1 MTR_5g037500 30.053 376 215 16 1 348 585 940 1.27e-23 105
MS.gene94011.t1 MTR_5g028340 28.602 472 267 19 1 448 636 1061 2.40e-23 105
MS.gene94011.t1 MTR_5g070960 29.293 396 223 14 5 392 648 994 3.63e-23 104
MS.gene94011.t1 MTR_6g046440 27.214 463 286 19 2 442 579 1012 6.09e-23 103
MS.gene94011.t1 MTR_0133s0020 28.855 454 235 20 2 392 643 1071 7.39e-23 103
MS.gene94011.t1 MTR_5g071470 31.871 342 207 12 5 343 646 964 8.67e-23 103
MS.gene94011.t1 MTR_5g035240 30.650 323 183 11 1 299 645 950 9.81e-23 103
MS.gene94011.t1 MTR_8g036195 29.075 454 268 19 2 418 620 1056 1.44e-22 102
MS.gene94011.t1 MTR_5g070490 31.017 403 234 16 5 397 643 1011 1.62e-22 102
MS.gene94011.t1 MTR_5g035200 31.085 341 201 15 17 348 2 317 2.90e-22 99.0
MS.gene94011.t1 MTR_3g023320 27.887 459 279 21 2 436 638 1068 3.90e-22 101
MS.gene94011.t1 MTR_2g078070 28.675 415 210 16 1 341 660 1062 4.02e-22 101
MS.gene94011.t1 MTR_3g086070 28.607 402 242 16 2 383 635 1011 6.97e-22 100
MS.gene94011.t1 MTR_6g052760 26.974 456 277 19 1 434 639 1060 8.68e-22 100
MS.gene94011.t1 MTR_6g046930 27.384 409 247 17 2 385 633 1016 3.22e-21 98.6
MS.gene94011.t1 MTR_6g047450 25.949 474 286 21 2 442 636 1077 1.64e-20 96.3
MS.gene94011.t1 MTR_0256s0050 25.708 459 298 19 2 442 605 1038 1.95e-20 96.3
MS.gene94011.t1 MTR_5g028290 28.406 433 250 18 1 394 663 1074 2.56e-20 95.9
MS.gene94011.t1 MTR_5g028070 27.912 498 292 20 1 467 777 1238 2.72e-20 95.9
MS.gene94011.t1 MTR_5g028420 29.551 423 255 18 1 392 630 1040 2.86e-20 95.5
MS.gene94011.t1 MTR_1g078450 37.778 135 79 3 1 131 1 134 3.21e-20 91.3
MS.gene94011.t1 MTR_5g071570 32.453 265 163 8 4 264 646 898 6.08e-20 94.7
MS.gene94011.t1 MTR_6g046750 27.273 440 258 18 15 443 4 392 1.15e-19 92.4
MS.gene94011.t1 MTR_3g022730 27.221 349 211 12 203 513 11 354 7.13e-19 89.7
MS.gene94011.t1 MTR_6g046750 25.575 391 205 16 15 344 4 369 1.47e-18 88.6
MS.gene94011.t1 MTR_5g037460 29.740 269 171 10 1 260 514 773 1.59e-18 89.7
MS.gene94011.t1 MTR_0133s0030 26.683 401 250 18 2 383 635 1010 2.14e-18 89.7
MS.gene94011.t1 MTR_0005s0210 28.934 394 222 12 172 514 31 417 5.49e-18 87.0
MS.gene94011.t1 MTR_5g028610 26.712 438 250 18 1 388 633 1049 6.60e-18 88.2
MS.gene94011.t1 MTR_5g072250 36.697 218 125 6 4 217 643 851 3.26e-17 85.9
MS.gene94011.t1 MTR_6g016430 28.871 381 215 16 1 341 655 1019 3.40e-17 85.9
MS.gene94011.t1 MTR_3g018930 40.000 130 71 3 1 124 665 793 3.56e-17 85.5
MS.gene94011.t1 MTR_5g039570 37.500 152 87 4 5 152 415 562 4.32e-17 85.1
MS.gene94011.t1 MTR_5g034770 35.333 150 92 3 1 149 631 776 5.60e-17 85.1
MS.gene94011.t1 MTR_5g028750 27.542 472 282 22 1 448 620 1055 1.18e-16 84.0
MS.gene94011.t1 MTR_6g046570 26.824 466 236 23 1 402 641 1065 1.37e-16 84.0
MS.gene94011.t1 MTR_5g070470 31.143 350 211 11 36 375 676 1005 3.39e-16 82.8
MS.gene94011.t1 MTR_3g022590 30.625 320 166 17 166 440 118 426 6.63e-16 80.5
MS.gene94011.t1 MTR_3g022590 27.094 406 217 17 1 341 35 426 2.33e-12 69.7
MS.gene94011.t1 MTR_5g040900 29.412 255 144 8 33 260 610 855 8.14e-16 81.3
MS.gene94011.t1 MTR_6g016420 28.378 370 200 20 21 373 656 977 2.28e-15 80.1
MS.gene94011.t1 MTR_3g071080 31.765 255 144 7 285 514 89 338 2.40e-15 78.6
MS.gene94011.t1 MTR_3g071040 31.765 255 144 7 285 514 89 338 2.40e-15 78.6
MS.gene94011.t1 MTR_3g071010 31.373 255 145 7 285 514 98 347 2.75e-15 78.6
MS.gene94011.t1 MTR_6g046450 25.405 370 231 16 39 394 710 1048 7.43e-15 78.6
MS.gene94011.t1 MTR_3g031860 54.930 71 32 0 444 514 17 87 1.05e-14 75.5
MS.gene94011.t1 MTR_6g016420 33.333 177 106 7 21 195 656 822 8.63e-14 75.1
MS.gene94011.t1 MTR_6g046760 25.503 447 244 18 15 402 4 420 4.62e-13 71.6
MS.gene94011.t1 MTR_6g079000 28.013 307 200 12 178 482 674 961 7.13e-13 72.4
MS.gene94011.t1 MTR_6g079000 25.635 394 246 18 108 481 829 1195 4.47e-12 69.7
MS.gene94011.t1 MTR_3g070650 31.373 255 145 7 285 514 170 419 2.12e-12 69.7
MS.gene94011.t1 MTR_3g015560 33.918 171 84 7 1 147 644 809 7.14e-12 68.6
MS.gene94011.t1 MTR_6g077640 29.167 288 164 12 180 436 650 928 1.05e-11 68.6
MS.gene94011.t1 MTR_6g078930 26.648 364 213 16 95 437 801 1131 8.38e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94011.t1 AT3G14470 33.243 370 218 11 1 354 664 1020 1.91e-45 172
MS.gene94011.t1 AT3G14470 33.243 370 218 11 1 354 664 1020 1.91e-45 172
MS.gene94011.t1 AT3G14460 37.805 246 139 4 1 236 658 899 1.38e-38 152
MS.gene94011.t1 AT3G14460 32.692 260 145 5 282 514 1090 1346 9.21e-21 97.4

Find 133 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCTGCTCCAAATAATTT+TGG 0.094297 3.1:-25646278 None:intergenic
AATATTAATAGTACGTAATT+TGG 0.128505 3.1:-25646740 None:intergenic
CACTATGAAAGTGGTGAATT+TGG 0.137362 3.1:+25645962 MS.gene94011:CDS
CTCCAAGATCTTTCCATTAA+TGG 0.147447 3.1:+25646517 MS.gene94011:CDS
TTTCATTACCCAAAATTATT+TGG 0.166749 3.1:+25646269 MS.gene94011:CDS
AGAGGAAGGAATGCTAAATT+TGG 0.227543 3.1:-25646400 None:intergenic
CAGCATTTGTCTTCGATTCT+TGG 0.229602 3.1:+25646294 MS.gene94011:CDS
TGTTTCCATTCCTTCCAATT+TGG 0.243736 3.1:-25645941 None:intergenic
TCTTACTTCTCTTTCAAGTT+TGG 0.246389 3.1:+25646810 MS.gene94011:CDS
ACAATTGGGCTGGAGTTCTA+TGG 0.279103 3.1:+25645845 MS.gene94011:CDS
CCCAAAGTCACGATGGAAAT+TGG 0.285498 3.1:-25646886 None:intergenic
GCCAATTTCCATCGTGACTT+TGG 0.303171 3.1:+25646885 MS.gene94011:CDS
CAAAATGGTAAAGTTAGTTC+TGG 0.306943 3.1:-25646697 None:intergenic
ATATCTCTGGTATGCCAAAT+TGG 0.328757 3.1:+25645927 MS.gene94011:CDS
CTTACTTCTCTTTCAAGTTT+GGG 0.329307 3.1:+25646811 MS.gene94011:CDS
CCAATTTCCATCGTGACTTT+GGG 0.339471 3.1:+25646886 MS.gene94011:CDS
ATATTAATAGTACGTAATTT+GGG 0.347309 3.1:-25646739 None:intergenic
GGCAAATGTCCCTTTAGTTT+AGG 0.349241 3.1:-25646022 None:intergenic
CTCTTGTGAAGTTGCAGTTA+AGG 0.351195 3.1:+25646446 MS.gene94011:CDS
AGGCAAGCTCCTTTACAAAA+TGG 0.352555 3.1:-25646712 None:intergenic
TTAAACAATATCTATATTGA+TGG 0.366285 3.1:+25646136 MS.gene94011:CDS
TGGAAAGATCTTGGAGTGTT+GGG 0.367560 3.1:-25646510 None:intergenic
AGCCATTAATGGAAAGATCT+TGG 0.382904 3.1:-25646519 None:intergenic
CACGCCCAAGTGACAACCAT+TGG 0.407354 3.1:-25646165 None:intergenic
GGATTAACCTCAATATTCTA+AGG 0.409681 3.1:-25645994 None:intergenic
AACAACGCCTGTAGCTGAAT+GGG 0.411406 3.1:+25646777 MS.gene94011:CDS
AAAGTGCATACACAGGGATT+TGG 0.417376 3.1:+25647756 MS.gene94011:CDS
ACAAGCTTTCCGAGTTGGTT+GGG 0.420739 3.1:+25645698 MS.gene94011:CDS
TTGAAAGAGAAGTAAGATGT+TGG 0.438830 3.1:-25646804 None:intergenic
ACAAACTTTCAAGAGAGATC+AGG 0.440382 3.1:-25646660 None:intergenic
CTCAAGGACTTGACTATTGA+GGG 0.440800 3.1:+25645809 MS.gene94011:CDS
AATCCTATGTCCTAAACTAA+AGG 0.442771 3.1:+25646012 MS.gene94011:CDS
AATTATGTACCGAAAATGAT+TGG 0.443276 3.1:-25646600 None:intergenic
CTTACCTCCTTCCCATTGGA+TGG 0.445160 3.1:+25646484 MS.gene94011:CDS
CATTCCTTCCTCTTGAAACA+TGG 0.447014 3.1:+25646410 MS.gene94011:CDS
ATGGAAAGATCTTGGAGTGT+TGG 0.449020 3.1:-25646511 None:intergenic
CAATCTCAAGTAACAACCAT+TGG 0.453048 3.1:-25646195 None:intergenic
AAACTGAGCATTAGCTTGTA+TGG 0.458760 3.1:+25645671 MS.gene94011:CDS
ATCCTATGTCCTAAACTAAA+GGG 0.459934 3.1:+25646013 MS.gene94011:CDS
TCTCAAGGACTTGACTATTG+AGG 0.463248 3.1:+25645808 MS.gene94011:CDS
GGTATGACAATGGAAACAAT+TGG 0.464697 3.1:+25645830 MS.gene94011:CDS
AAATGGTTGGAATGAAGAAA+TGG 0.466639 3.1:-25645885 None:intergenic
AGCTAATGCTCAGTTTCCTC+AGG 0.468195 3.1:-25645664 None:intergenic
GAGATGCCAATGCAAATTGT+TGG 0.478369 3.1:+25645377 None:intergenic
TAACAACGCCTGTAGCTGAA+TGG 0.487691 3.1:+25646776 MS.gene94011:CDS
GAGAAGCAAAGAAGATATTG+AGG 0.488574 3.1:+25645559 MS.gene94011:CDS
GTCCCTTTAGTTTAGGACAT+AGG 0.488800 3.1:-25646015 None:intergenic
AATATAGATATTGTTTAATG+AGG 0.489339 3.1:-25646131 None:intergenic
TCTCTTTCAAGTTTGGGTAT+CGG 0.489838 3.1:+25646817 MS.gene94011:CDS
GACAAGCTTTCCGAGTTGGT+TGG 0.489938 3.1:+25645697 MS.gene94011:CDS
TACACTTACCTCCTTCCCAT+TGG 0.490115 3.1:+25646480 MS.gene94011:CDS
GACAATGGAAACAATTGGGC+TGG 0.494599 3.1:+25645835 MS.gene94011:CDS
AATCTCAAGTAACAACCATT+GGG 0.496819 3.1:-25646194 None:intergenic
TGGTAAGTTTCCTAACCTGC+GGG 0.501181 3.1:+25645472 MS.gene94011:CDS
AGAGAGATCAGGGTGTCTAT+TGG 0.504090 3.1:-25646649 None:intergenic
TGGAGACCCCATTCAGCTAC+AGG 0.504238 3.1:-25646784 None:intergenic
GGACCCAATGGTTGTCACTT+GGG 0.508095 3.1:+25646161 MS.gene94011:CDS
TTGAGTCCAACAATTTGCAT+TGG 0.508459 3.1:-25645383 None:intergenic
TAGTACGTAATTTGGGAGGT+AGG 0.508577 3.1:-25646732 None:intergenic
GTATGCCAAATTGGAAGGAA+TGG 0.509691 3.1:+25645936 MS.gene94011:CDS
ACGCCCAAGTGACAACCATT+GGG 0.512186 3.1:-25646164 None:intergenic
TCTCTTGAAAGTTTGTCTCT+CGG 0.513243 3.1:+25646667 MS.gene94011:CDS
CAATTGGGCTGGAGTTCTAT+GGG 0.518360 3.1:+25645846 MS.gene94011:CDS
AGTTTCCTCAGGTTAAATGA+AGG 0.519316 3.1:-25645653 None:intergenic
TGCCCCATGTTTCAAGAGGA+AGG 0.524193 3.1:-25646414 None:intergenic
GTGGGACAAGCTTTCCGAGT+TGG 0.527121 3.1:+25645693 MS.gene94011:CDS
TCTCGAGAGATTGAAATGGT+TGG 0.529204 3.1:-25645898 None:intergenic
GTATGACAATGGAAACAATT+GGG 0.533471 3.1:+25645831 MS.gene94011:CDS
GTTGACATCATAAGCCTCAA+TGG 0.536246 3.1:-25645534 None:intergenic
CTCTGGTATGCCAAATTGGA+AGG 0.536644 3.1:+25645931 MS.gene94011:CDS
TTCCTCGCCTTAGAATATTG+AGG 0.537741 3.1:+25645987 MS.gene94011:CDS
ATTCCTTCCTCTTGAAACAT+GGG 0.538260 3.1:+25646411 MS.gene94011:CDS
TGGACCCAATGGTTGTCACT+TGG 0.541391 3.1:+25646160 MS.gene94011:CDS
AACCTCTTTGACACTTAACC+CGG 0.542698 3.1:-25645450 None:intergenic
GAGAGCCAATGCAGAGTAGT+CGG 0.546412 3.1:-25646109 None:intergenic
GTTGTTAATAGGTTTGTCAT+CGG 0.549201 3.1:+25647723 MS.gene94011:intron
AAAATCTCGAGAGATTGAAA+TGG 0.551089 3.1:-25645902 None:intergenic
TCAGTTGGCAAGCAAGACAC+CGG 0.551722 3.1:+25645431 MS.gene94011:CDS
GTAGGAAAAGCAGTGAGAGA+TGG 0.553683 3.1:-25646331 None:intergenic
TGGCATCCATGACATTCTGC+AGG 0.558406 3.1:-25645514 None:intergenic
TTGGAGGGTTGACGAGAGAT+CGG 0.559506 3.1:-25646581 None:intergenic
TCGTATCTATTGAAGAAAGA+TGG 0.560130 3.1:-25646048 None:intergenic
CACCACCGACTACTCTGCAT+TGG 0.561443 3.1:+25646104 MS.gene94011:CDS
GTTACAATGGAGCAAACAAA+CGG 0.562762 3.1:+25645589 MS.gene94011:CDS
CAAACTTTCAAGAGAGATCA+GGG 0.565098 3.1:-25646659 None:intergenic
TTGAGGAGTTAGAGTTACAA+TGG 0.571958 3.1:+25645576 MS.gene94011:CDS
CTTTCAAGTTTGGGTATCGG+AGG 0.573911 3.1:+25646820 MS.gene94011:CDS
ACAATATCTATATTGATGGA+TGG 0.575570 3.1:+25646140 MS.gene94011:CDS
GTGTTGGGAAACCATCCAAT+GGG 0.577876 3.1:-25646495 None:intergenic
GAATGGAAACACTATGAAAG+TGG 0.578211 3.1:+25645953 MS.gene94011:CDS
TATAAGTGACTGCAATGAGG+TGG 0.579029 3.1:-25646365 None:intergenic
AACCTCAATATTCTAAGGCG+AGG 0.579977 3.1:-25645989 None:intergenic
AGGTCAACTACCTTCTCTCA+AGG 0.583099 3.1:+25645793 MS.gene94011:CDS
CAAGAACCTGCAGAATGTCA+TGG 0.584113 3.1:+25645508 MS.gene94011:CDS
ATGTACCGAAAATGATTGGA+GGG 0.588330 3.1:-25646596 None:intergenic
ATAGTCAAGTCCTTGAGAGA+AGG 0.588609 3.1:-25645803 None:intergenic
TGCAACCTTCATTTAACCTG+AGG 0.589909 3.1:+25645648 MS.gene94011:CDS
TAATTGCCCCATGTTTCAAG+AGG 0.589911 3.1:-25646418 None:intergenic
TTCCTTCCTCTTGAAACATG+GGG 0.589934 3.1:+25646412 MS.gene94011:CDS
TATTGTTAACACCTTGCTGA+AGG 0.590977 3.1:+25646852 MS.gene94011:CDS
TGAGCATTAGCTTGTATGGT+GGG 0.591033 3.1:+25645675 MS.gene94011:CDS
TATGTACCGAAAATGATTGG+AGG 0.591848 3.1:-25646597 None:intergenic
GGGTTAAGTGTCAAAGAGGT+TGG 0.597437 3.1:+25645452 MS.gene94011:CDS
TTGGTAAGTTTCCTAACCTG+CGG 0.599039 3.1:+25645471 MS.gene94011:CDS
TTTACACTTTGTAGCACACA+GGG 0.603801 3.1:-25646223 None:intergenic
TGTCTAACACTTCCACCACT+AGG 0.604464 3.1:+25645773 MS.gene94011:CDS
CAGTTGGCAAGCAAGACACC+GGG 0.605994 3.1:+25645432 MS.gene94011:CDS
GAATGTCATGGATGCCATTG+AGG 0.607149 3.1:+25645520 MS.gene94011:CDS
TCTATTGAAGAAAGATGGCT+CGG 0.612524 3.1:-25646043 None:intergenic
GGTTGGAATGAAGAAATGGA+AGG 0.617852 3.1:-25645881 None:intergenic
CAGCAACTGCTCCTTCAGCA+AGG 0.618344 3.1:-25646863 None:intergenic
AGTGTTGGGAAACCATCCAA+TGG 0.620610 3.1:-25646496 None:intergenic
CTGAGCATTAGCTTGTATGG+TGG 0.620848 3.1:+25645674 MS.gene94011:CDS
CACCGGGTTAAGTGTCAAAG+AGG 0.623414 3.1:+25645448 MS.gene94011:CDS
GAAGGTAGTTGACCTAGTGG+TGG 0.623575 3.1:-25645785 None:intergenic
AAAGGATCACCCAACCAACT+CGG 0.629543 3.1:-25645707 None:intergenic
GACGTGCAAAGTGCATACAC+AGG 0.631026 3.1:+25647749 MS.gene94011:CDS
GACTATTGAGGGTATGACAA+TGG 0.633889 3.1:+25645820 MS.gene94011:CDS
ATAAGTGACTGCAATGAGGT+GGG 0.634761 3.1:-25646364 None:intergenic
TGGGAAACCATCCAATGGGA+AGG 0.635457 3.1:-25646491 None:intergenic
GAAACCATCCAATGGGAAGG+AGG 0.639679 3.1:-25646488 None:intergenic
TTAATAGTACGTAATTTGGG+AGG 0.647762 3.1:-25646736 None:intergenic
GACACCATGTTAGAAAACAA+AGG 0.649132 3.1:-25645725 None:intergenic
ACAACGCCTGTAGCTGAATG+GGG 0.649908 3.1:+25646778 MS.gene94011:CDS
GAGGTGGGTAGACCATCTGT+AGG 0.654952 3.1:-25646349 None:intergenic
AGAGAAGGTAGTTGACCTAG+TGG 0.666574 3.1:-25645788 None:intergenic
ATATTGATGGATGGACCCAA+TGG 0.666754 3.1:+25646149 MS.gene94011:CDS
ACGTGCAAAGTGCATACACA+GGG 0.668581 3.1:+25647750 MS.gene94011:CDS
AGAAATACCCAAAGTCACGA+TGG 0.669719 3.1:-25646893 None:intergenic
AGCCAATGCAGAGTAGTCGG+TGG 0.679571 3.1:-25646106 None:intergenic
AATTATAAGTGACTGCAATG+AGG 0.696912 3.1:-25646368 None:intergenic
GGTAAGTTTCCTAACCTGCG+GGG 0.710665 3.1:+25645473 MS.gene94011:CDS
TTCACAATTAGAGATACACA+AGG 0.763984 3.1:-25645747 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAGATATTGTTTAATG+AGG - chr3.1:25646134-25646153 None:intergenic 15.0%
!! AATATTAATAGTACGTAATT+TGG - chr3.1:25646743-25646762 None:intergenic 15.0%
!! ATATTAATAGTACGTAATTT+GGG - chr3.1:25646742-25646761 None:intergenic 15.0%
!! TTAAACAATATCTATATTGA+TGG + chr3.1:25646136-25646155 MS.gene94011:CDS 15.0%
!!! TTTATTCTTTTGTTGTTAAT+AGG + chr3.1:25647712-25647731 MS.gene94011:intron 15.0%
!! ACAAGTAAATGAAAACTAAA+AGG + chr3.1:25647353-25647372 MS.gene94011:intron 20.0%
!! ATATACACATATATATCCTA+AGG + chr3.1:25647514-25647533 MS.gene94011:intron 20.0%
!! TTTCATTACCCAAAATTATT+TGG + chr3.1:25646269-25646288 MS.gene94011:CDS 20.0%
!!! AGAACTTTCTGAAATAAAAA+TGG - chr3.1:25646560-25646579 None:intergenic 20.0%
!!! CTTGAGATTTTGAAATTAAT+GGG + chr3.1:25647302-25647321 MS.gene94011:intron 20.0%
!!! TCAAGAATATGATTTTCAAT+AGG - chr3.1:25647645-25647664 None:intergenic 20.0%
!!! TCTTGAGATTTTGAAATTAA+TGG + chr3.1:25647301-25647320 MS.gene94011:intron 20.0%
! AAAAATCAGTTAATGTTTGC+AGG - chr3.1:25645412-25645431 None:intergenic 25.0%
! AAAAATTGAACGATTCTTCA+TGG - chr3.1:25647230-25647249 None:intergenic 25.0%
! AATTATGTACCGAAAATGAT+TGG - chr3.1:25646603-25646622 None:intergenic 25.0%
! ACAATATCTATATTGATGGA+TGG + chr3.1:25646140-25646159 MS.gene94011:CDS 25.0%
! ATAAAATCCTTTGATGGAAA+TGG + chr3.1:25646928-25646947 MS.gene94011:intron 25.0%
! GACATTGAAATTATTACCTT+AGG - chr3.1:25647533-25647552 None:intergenic 25.0%
! TGTGAAATAAAATCCTTTGA+TGG + chr3.1:25646922-25646941 MS.gene94011:intron 25.0%
! TTATAAGCTTAATCTCAACT+AGG - chr3.1:25647669-25647688 None:intergenic 25.0%
! TTCAAAATCTCAAGAAATGT+TGG - chr3.1:25647296-25647315 None:intergenic 25.0%
!! CTAACTTTACCATTTTGTAA+AGG + chr3.1:25646703-25646722 MS.gene94011:CDS 25.0%
!! TATTTTATGAATTGTTCGAC+AGG - chr3.1:25647253-25647272 None:intergenic 25.0%
!! TCATCTTTTCATTTCTCTTA+AGG + chr3.1:25647780-25647799 MS.gene94011:CDS 25.0%
!!! AATTTTGGGTAATGAAAACA+GGG - chr3.1:25646266-25646285 None:intergenic 25.0%
!!! ACATTAACTGATTTTTCAGT+TGG + chr3.1:25645416-25645435 MS.gene94011:CDS 25.0%
!!! TAATTTTGGGTAATGAAAAC+AGG - chr3.1:25646267-25646286 None:intergenic 25.0%
AAAATCTCGAGAGATTGAAA+TGG - chr3.1:25645905-25645924 None:intergenic 30.0%
AAAATTTGCAATCCTGTTTC+AGG + chr3.1:25647180-25647199 MS.gene94011:intron 30.0%
AAACTATAAAAGTCAGAGGT+TGG + chr3.1:25647080-25647099 MS.gene94011:intron 30.0%
AAATGGTTGGAATGAAGAAA+TGG - chr3.1:25645888-25645907 None:intergenic 30.0%
AAGCAAACTATAAAAGTCAG+AGG + chr3.1:25647076-25647095 MS.gene94011:intron 30.0%
AATCCTATGTCCTAAACTAA+AGG + chr3.1:25646012-25646031 MS.gene94011:CDS 30.0%
AATCTCAAGTAACAACCATT+GGG - chr3.1:25646197-25646216 None:intergenic 30.0%
AATGAGGAAGTGATAATATG+AGG + chr3.1:25647132-25647151 MS.gene94011:intron 30.0%
AATTATAAGTGACTGCAATG+AGG - chr3.1:25646371-25646390 None:intergenic 30.0%
ATCCTATGTCCTAAACTAAA+GGG + chr3.1:25646013-25646032 MS.gene94011:CDS 30.0%
ATGAGGAAGTGATAATATGA+GGG + chr3.1:25647133-25647152 MS.gene94011:intron 30.0%
CAAAATGGTAAAGTTAGTTC+TGG - chr3.1:25646700-25646719 None:intergenic 30.0%
CATTAATGGCTGTAAAAATC+TGG + chr3.1:25646531-25646550 MS.gene94011:CDS 30.0%
GGATTAACCTCAATATTCTA+AGG - chr3.1:25645997-25646016 None:intergenic 30.0%
GTATGACAATGGAAACAATT+GGG + chr3.1:25645831-25645850 MS.gene94011:CDS 30.0%
GTTGTTAATAGGTTTGTCAT+CGG + chr3.1:25647723-25647742 MS.gene94011:intron 30.0%
TCGTATCTATTGAAGAAAGA+TGG - chr3.1:25646051-25646070 None:intergenic 30.0%
TTAATAGTACGTAATTTGGG+AGG - chr3.1:25646739-25646758 None:intergenic 30.0%
TTCACAATTAGAGATACACA+AGG - chr3.1:25645750-25645769 None:intergenic 30.0%
TTGAAAGAGAAGTAAGATGT+TGG - chr3.1:25646807-25646826 None:intergenic 30.0%
! AATGCTGCTCCAAATAATTT+TGG - chr3.1:25646281-25646300 None:intergenic 30.0%
! ATGCTGCTCCAAATAATTTT+GGG - chr3.1:25646280-25646299 None:intergenic 30.0%
! CAGATTTTTACAGCCATTAA+TGG - chr3.1:25646533-25646552 None:intergenic 30.0%
! GTCTATTTTACGCATTTACA+TGG + chr3.1:25647550-25647569 MS.gene94011:intron 30.0%
! TAAGAATCCAGATTGATTCT+TGG + chr3.1:25647405-25647424 MS.gene94011:intron 30.0%
!! CTTACTTCTCTTTCAAGTTT+GGG + chr3.1:25646811-25646830 MS.gene94011:CDS 30.0%
!! TATAGTTTGCTTCTAACAGA+GGG - chr3.1:25647068-25647087 None:intergenic 30.0%
!! TCTTACTTCTCTTTCAAGTT+TGG + chr3.1:25646810-25646829 MS.gene94011:CDS 30.0%
!! TTATAGTTTGCTTCTAACAG+AGG - chr3.1:25647069-25647088 None:intergenic 30.0%
!!! AAAGCTAAGTTTTTCAAGAG+AGG - chr3.1:25646968-25646987 None:intergenic 30.0%
!!! TAAGTTTTTCAAGAGAGGAT+AGG - chr3.1:25646963-25646982 None:intergenic 30.0%
!!! TGATCCTTTGTTTTCTAACA+TGG + chr3.1:25645721-25645740 MS.gene94011:CDS 30.0%
!!! TTAGCTTTTTTGATTGTCCA+AGG + chr3.1:25646980-25646999 MS.gene94011:intron 30.0%
AAGAAACTCATACCTGAAAC+AGG - chr3.1:25647195-25647214 None:intergenic 35.0%
ACAAACTTTCAAGAGAGATC+AGG - chr3.1:25646663-25646682 None:intergenic 35.0%
AGAGGAAGGAATGCTAAATT+TGG - chr3.1:25646403-25646422 None:intergenic 35.0%
AGCCATTAATGGAAAGATCT+TGG - chr3.1:25646522-25646541 None:intergenic 35.0%
AGTTTCCTCAGGTTAAATGA+AGG - chr3.1:25645656-25645675 None:intergenic 35.0%
ATATCTCTGGTATGCCAAAT+TGG + chr3.1:25645927-25645946 MS.gene94011:CDS 35.0%
ATGTACCGAAAATGATTGGA+GGG - chr3.1:25646599-25646618 None:intergenic 35.0%
ATTCCTTCCTCTTGAAACAT+GGG + chr3.1:25646411-25646430 MS.gene94011:CDS 35.0%
ATTTATTCTTACGACTGGGA+TGG - chr3.1:25647115-25647134 None:intergenic 35.0%
CAAACTTTCAAGAGAGATCA+GGG - chr3.1:25646662-25646681 None:intergenic 35.0%
CAATCTCAAGTAACAACCAT+TGG - chr3.1:25646198-25646217 None:intergenic 35.0%
CACTATGAAAGTGGTGAATT+TGG + chr3.1:25645962-25645981 MS.gene94011:CDS 35.0%
CATTGAACCAAGAATCAATC+TGG - chr3.1:25647415-25647434 None:intergenic 35.0%
CCTCATTTATTCTTACGACT+GGG - chr3.1:25647119-25647138 None:intergenic 35.0%
CTCCAAGATCTTTCCATTAA+TGG + chr3.1:25646517-25646536 MS.gene94011:CDS 35.0%
GAAGTGATAATATGAGGGAA+GGG + chr3.1:25647138-25647157 MS.gene94011:intron 35.0%
GAATGGAAACACTATGAAAG+TGG + chr3.1:25645953-25645972 MS.gene94011:CDS 35.0%
GACACCATGTTAGAAAACAA+AGG - chr3.1:25645728-25645747 None:intergenic 35.0%
GAGAAGCAAAGAAGATATTG+AGG + chr3.1:25645559-25645578 MS.gene94011:CDS 35.0%
GGTATGACAATGGAAACAAT+TGG + chr3.1:25645830-25645849 MS.gene94011:CDS 35.0%
GTTACAATGGAGCAAACAAA+CGG + chr3.1:25645589-25645608 MS.gene94011:CDS 35.0%
TATGTACCGAAAATGATTGG+AGG - chr3.1:25646600-25646619 None:intergenic 35.0%
TATTGTTAACACCTTGCTGA+AGG + chr3.1:25646852-25646871 MS.gene94011:CDS 35.0%
TCCTCATTTATTCTTACGAC+TGG - chr3.1:25647120-25647139 None:intergenic 35.0%
TCTATTGAAGAAAGATGGCT+CGG - chr3.1:25646046-25646065 None:intergenic 35.0%
TCTCTTGAAAGTTTGTCTCT+CGG + chr3.1:25646667-25646686 MS.gene94011:CDS 35.0%
TCTTAAGATAATGCGCATCT+GGG + chr3.1:25647038-25647057 MS.gene94011:intron 35.0%
TGTTTCCATTCCTTCCAATT+TGG - chr3.1:25645944-25645963 None:intergenic 35.0%
TTGAGGAGTTAGAGTTACAA+TGG + chr3.1:25645576-25645595 MS.gene94011:CDS 35.0%
TTGAGTCCAACAATTTGCAT+TGG - chr3.1:25645386-25645405 None:intergenic 35.0%
TTTACACTTTGTAGCACACA+GGG - chr3.1:25646226-25646245 None:intergenic 35.0%
! CTCGAGATTTTACATATCTC+TGG + chr3.1:25645914-25645933 MS.gene94011:CDS 35.0%
! TTTTACACTTTGTAGCACAC+AGG - chr3.1:25646227-25646246 None:intergenic 35.0%
!! AAACTGAGCATTAGCTTGTA+TGG + chr3.1:25645671-25645690 MS.gene94011:CDS 35.0%
!! TCTCTTTCAAGTTTGGGTAT+CGG + chr3.1:25646817-25646836 MS.gene94011:CDS 35.0%
AAAGTGCATACACAGGGATT+TGG + chr3.1:25647756-25647775 MS.gene94011:CDS 40.0%
AACCTCTTTGACACTTAACC+CGG - chr3.1:25645453-25645472 None:intergenic 40.0%
AGAAATACCCAAAGTCACGA+TGG - chr3.1:25646896-25646915 None:intergenic 40.0%
AGGCAAGCTCCTTTACAAAA+TGG - chr3.1:25646715-25646734 None:intergenic 40.0%
ATAAGTGACTGCAATGAGGT+GGG - chr3.1:25646367-25646386 None:intergenic 40.0%
ATAGTCAAGTCCTTGAGAGA+AGG - chr3.1:25645806-25645825 None:intergenic 40.0%
ATGGAAAGATCTTGGAGTGT+TGG - chr3.1:25646514-25646533 None:intergenic 40.0%
CAGCATTTGTCTTCGATTCT+TGG + chr3.1:25646294-25646313 MS.gene94011:CDS 40.0%
CATTCCTTCCTCTTGAAACA+TGG + chr3.1:25646410-25646429 MS.gene94011:CDS 40.0%
CCAATTTCCATCGTGACTTT+GGG + chr3.1:25646886-25646905 MS.gene94011:CDS 40.0%
CCCAGTCGTAAGAATAAATG+AGG + chr3.1:25647116-25647135 MS.gene94011:intron 40.0%
CGCATTATCTTAAGAGAGGA+TGG - chr3.1:25647033-25647052 None:intergenic 40.0%
CTCAAGGACTTGACTATTGA+GGG + chr3.1:25645809-25645828 MS.gene94011:CDS 40.0%
CTCTTAAGATAATGCGCATC+TGG + chr3.1:25647037-25647056 MS.gene94011:intron 40.0%
CTCTTGTGAAGTTGCAGTTA+AGG + chr3.1:25646446-25646465 MS.gene94011:CDS 40.0%
GATGCGCATTATCTTAAGAG+AGG - chr3.1:25647037-25647056 None:intergenic 40.0%
GGAAGTGATAATATGAGGGA+AGG + chr3.1:25647137-25647156 MS.gene94011:intron 40.0%
GGTTGGAATGAAGAAATGGA+AGG - chr3.1:25645884-25645903 None:intergenic 40.0%
GTATGCCAAATTGGAAGGAA+TGG + chr3.1:25645936-25645955 MS.gene94011:CDS 40.0%
GTTGACATCATAAGCCTCAA+TGG - chr3.1:25645537-25645556 None:intergenic 40.0%
TAATTGCCCCATGTTTCAAG+AGG - chr3.1:25646421-25646440 None:intergenic 40.0%
TAGTACGTAATTTGGGAGGT+AGG - chr3.1:25646735-25646754 None:intergenic 40.0%
TATAAGTGACTGCAATGAGG+TGG - chr3.1:25646368-25646387 None:intergenic 40.0%
TCTCAAGGACTTGACTATTG+AGG + chr3.1:25645808-25645827 MS.gene94011:CDS 40.0%
TCTCGAGAGATTGAAATGGT+TGG - chr3.1:25645901-25645920 None:intergenic 40.0%
TGATAATATGAGGGAAGGGA+CGG + chr3.1:25647142-25647161 MS.gene94011:intron 40.0%
TGCAACCTTCATTTAACCTG+AGG + chr3.1:25645648-25645667 MS.gene94011:CDS 40.0%
TTCCTCGCCTTAGAATATTG+AGG + chr3.1:25645987-25646006 MS.gene94011:CDS 40.0%
TTCCTTCCTCTTGAAACATG+GGG + chr3.1:25646412-25646431 MS.gene94011:CDS 40.0%
TTGGTAAGTTTCCTAACCTG+CGG + chr3.1:25645471-25645490 MS.gene94011:CDS 40.0%
TTTCAAGAGAGGATAGGTGT+CGG - chr3.1:25646957-25646976 None:intergenic 40.0%
! ATATTGATGGATGGACCCAA+TGG + chr3.1:25646149-25646168 MS.gene94011:CDS 40.0%
! GACTATTGAGGGTATGACAA+TGG + chr3.1:25645820-25645839 MS.gene94011:CDS 40.0%
! GGCAAATGTCCCTTTAGTTT+AGG - chr3.1:25646025-25646044 None:intergenic 40.0%
! GTCAACCCTCCAATCATTTT+CGG + chr3.1:25646591-25646610 MS.gene94011:CDS 40.0%
! GTCCCTTTAGTTTAGGACAT+AGG - chr3.1:25646018-25646037 None:intergenic 40.0%
! TGGAAAGATCTTGGAGTGTT+GGG - chr3.1:25646513-25646532 None:intergenic 40.0%
!! AACCTCAATATTCTAAGGCG+AGG - chr3.1:25645992-25646011 None:intergenic 40.0%
!! TGAGCATTAGCTTGTATGGT+GGG + chr3.1:25645675-25645694 MS.gene94011:CDS 40.0%
AAAGGATCACCCAACCAACT+CGG - chr3.1:25645710-25645729 None:intergenic 45.0%
AACAACGCCTGTAGCTGAAT+GGG + chr3.1:25646777-25646796 MS.gene94011:CDS 45.0%
ACGTGCAAAGTGCATACACA+GGG + chr3.1:25647750-25647769 MS.gene94011:CDS 45.0%
AGAGAAGGTAGTTGACCTAG+TGG - chr3.1:25645791-25645810 None:intergenic 45.0%
AGCTAATGCTCAGTTTCCTC+AGG - chr3.1:25645667-25645686 None:intergenic 45.0%
AGGTCAACTACCTTCTCTCA+AGG + chr3.1:25645793-25645812 MS.gene94011:CDS 45.0%
CAAGAACCTGCAGAATGTCA+TGG + chr3.1:25645508-25645527 MS.gene94011:CDS 45.0%
CCCAAAGTCACGATGGAAAT+TGG - chr3.1:25646889-25646908 None:intergenic 45.0%
CTCTGGTATGCCAAATTGGA+AGG + chr3.1:25645931-25645950 MS.gene94011:CDS 45.0%
GAATGTCATGGATGCCATTG+AGG + chr3.1:25645520-25645539 MS.gene94011:CDS 45.0%
GACAATGGAAACAATTGGGC+TGG + chr3.1:25645835-25645854 MS.gene94011:CDS 45.0%
GCCAATTTCCATCGTGACTT+TGG + chr3.1:25646885-25646904 MS.gene94011:CDS 45.0%
GGGTTAAGTGTCAAAGAGGT+TGG + chr3.1:25645452-25645471 MS.gene94011:CDS 45.0%
GTAGGAAAAGCAGTGAGAGA+TGG - chr3.1:25646334-25646353 None:intergenic 45.0%
GTGTTGGGAAACCATCCAAT+GGG - chr3.1:25646498-25646517 None:intergenic 45.0%
TAACAACGCCTGTAGCTGAA+TGG + chr3.1:25646776-25646795 MS.gene94011:CDS 45.0%
TACACTTACCTCCTTCCCAT+TGG + chr3.1:25646480-25646499 MS.gene94011:CDS 45.0%
TCGGAGTCCATTTCCATCAA+AGG - chr3.1:25646938-25646957 None:intergenic 45.0%
TGGTAAGTTTCCTAACCTGC+GGG + chr3.1:25645472-25645491 MS.gene94011:CDS 45.0%
TGTCTAACACTTCCACCACT+AGG + chr3.1:25645773-25645792 MS.gene94011:CDS 45.0%
TTGGGCGTGAAAAAACCCAA+TGG + chr3.1:25646179-25646198 MS.gene94011:CDS 45.0%
TTTGACAGAGACTCAAGCCT+TGG - chr3.1:25647000-25647019 None:intergenic 45.0%
! ACAATTGGGCTGGAGTTCTA+TGG + chr3.1:25645845-25645864 MS.gene94011:CDS 45.0%
! AGAGAGATCAGGGTGTCTAT+TGG - chr3.1:25646652-25646671 None:intergenic 45.0%
! AGTGTTGGGAAACCATCCAA+TGG - chr3.1:25646499-25646518 None:intergenic 45.0%
! CAATTGGGCTGGAGTTCTAT+GGG + chr3.1:25645846-25645865 MS.gene94011:CDS 45.0%
! TGATACAAAGTTTTCCCCGC+AGG - chr3.1:25645490-25645509 None:intergenic 45.0%
!! ACAAGCTTTCCGAGTTGGTT+GGG + chr3.1:25645698-25645717 MS.gene94011:CDS 45.0%
!! CTCACTGCTTTTCCTACAGA+TGG + chr3.1:25646337-25646356 MS.gene94011:CDS 45.0%
!! CTGAGCATTAGCTTGTATGG+TGG + chr3.1:25645674-25645693 MS.gene94011:CDS 45.0%
!! CTTTCAAGTTTGGGTATCGG+AGG + chr3.1:25646820-25646839 MS.gene94011:CDS 45.0%
!!! TATATATATATATATTTTAC+TGG - chr3.1:25647461-25647480 None:intergenic 5.0%
ACAACGCCTGTAGCTGAATG+GGG + chr3.1:25646778-25646797 MS.gene94011:CDS 50.0%
ACGCCCAAGTGACAACCATT+GGG - chr3.1:25646167-25646186 None:intergenic 50.0%
CACCGGGTTAAGTGTCAAAG+AGG + chr3.1:25645448-25645467 MS.gene94011:CDS 50.0%
CTTACCTCCTTCCCATTGGA+TGG + chr3.1:25646484-25646503 MS.gene94011:CDS 50.0%
GAAACCATCCAATGGGAAGG+AGG - chr3.1:25646491-25646510 None:intergenic 50.0%
GAAGGTAGTTGACCTAGTGG+TGG - chr3.1:25645788-25645807 None:intergenic 50.0%
GACGTGCAAAGTGCATACAC+AGG + chr3.1:25647749-25647768 MS.gene94011:CDS 50.0%
GAGAGCCAATGCAGAGTAGT+CGG - chr3.1:25646112-25646131 None:intergenic 50.0%
GGTAAGTTTCCTAACCTGCG+GGG + chr3.1:25645473-25645492 MS.gene94011:CDS 50.0%
TCAGTTGGCAAGCAAGACAC+CGG + chr3.1:25645431-25645450 MS.gene94011:CDS 50.0%
TGCCCCATGTTTCAAGAGGA+AGG - chr3.1:25646417-25646436 None:intergenic 50.0%
TGGACCCAATGGTTGTCACT+TGG + chr3.1:25646160-25646179 MS.gene94011:CDS 50.0%
TGGCATCCATGACATTCTGC+AGG - chr3.1:25645517-25645536 None:intergenic 50.0%
TGGGAAACCATCCAATGGGA+AGG - chr3.1:25646494-25646513 None:intergenic 50.0%
TTGGAGGGTTGACGAGAGAT+CGG - chr3.1:25646584-25646603 None:intergenic 50.0%
! CAAAGTTTTCCCCGCAGGTT+AGG - chr3.1:25645485-25645504 None:intergenic 50.0%
! GGACCCAATGGTTGTCACTT+GGG + chr3.1:25646161-25646180 MS.gene94011:CDS 50.0%
!! GACAAGCTTTCCGAGTTGGT+TGG + chr3.1:25645697-25645716 MS.gene94011:CDS 50.0%
AGCCAATGCAGAGTAGTCGG+TGG - chr3.1:25646109-25646128 None:intergenic 55.0%
AGGGAAGGGACGGAAAGAGA+AGG + chr3.1:25647152-25647171 MS.gene94011:intron 55.0%
AGGGACGGAAAGAGAAGGGA+AGG + chr3.1:25647157-25647176 MS.gene94011:intron 55.0%
CACGCCCAAGTGACAACCAT+TGG - chr3.1:25646168-25646187 None:intergenic 55.0%
CAGCAACTGCTCCTTCAGCA+AGG - chr3.1:25646866-25646885 None:intergenic 55.0%
CAGTTGGCAAGCAAGACACC+GGG + chr3.1:25645432-25645451 MS.gene94011:CDS 55.0%
GAGGTGGGTAGACCATCTGT+AGG - chr3.1:25646352-25646371 None:intergenic 55.0%
GGGAAGGGACGGAAAGAGAA+GGG + chr3.1:25647153-25647172 MS.gene94011:intron 55.0%
GTGGGACAAGCTTTCCGAGT+TGG + chr3.1:25645693-25645712 MS.gene94011:CDS 55.0%
TGGAGACCCCATTCAGCTAC+AGG - chr3.1:25646787-25646806 None:intergenic 55.0%
! CACCACCGACTACTCTGCAT+TGG + chr3.1:25646104-25646123 MS.gene94011:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 25645380 25647822 25645380 ID=MS.gene94011
chr3.1 mRNA 25645380 25647822 25645380 ID=MS.gene94011.t1;Parent=MS.gene94011
chr3.1 exon 25645380 25646922 25645380 ID=MS.gene94011.t1.exon1;Parent=MS.gene94011.t1
chr3.1 CDS 25645380 25646922 25645380 ID=cds.MS.gene94011.t1;Parent=MS.gene94011.t1
chr3.1 exon 25647734 25647822 25647734 ID=MS.gene94011.t1.exon2;Parent=MS.gene94011.t1
chr3.1 CDS 25647734 25647822 25647734 ID=cds.MS.gene94011.t1;Parent=MS.gene94011.t1
Gene Sequence

>MS.gene94011

ATGCCAATGCAAATTGTTGGACTCAATAACCTGCAAACATTAACTGATTTTTCAGTTGGCAAGCAAGACACCGGGTTAAGTGTCAAAGAGGTTGGTAAGTTTCCTAACCTGCGGGGAAAACTTTGTATCAAGAACCTGCAGAATGTCATGGATGCCATTGAGGCTTATGATGTCAACATGAGAAGCAAAGAAGATATTGAGGAGTTAGAGTTACAATGGAGCAAACAAACGGAAGACTCACGAATAGAGAAAGATGTGCTTGATATGTTGCAACCTTCATTTAACCTGAGGAAACTGAGCATTAGCTTGTATGGTGGGACAAGCTTTCCGAGTTGGTTGGGTGATCCTTTGTTTTCTAACATGGTGTCCTTGTGTATCTCTAATTGTGAATATTGTCTAACACTTCCACCACTAGGTCAACTACCTTCTCTCAAGGACTTGACTATTGAGGGTATGACAATGGAAACAATTGGGCTGGAGTTCTATGGGATGACAGTAGAACCTTCCATTTCTTCATTCCAACCATTTCAATCTCTCGAGATTTTACATATCTCTGGTATGCCAAATTGGAAGGAATGGAAACACTATGAAAGTGGTGAATTTGGTTTTCCTCGCCTTAGAATATTGAGGTTAATCCTATGTCCTAAACTAAAGGGACATTTGCCGAGCCATCTTTCTTCAATAGATACGATCATGATAGATGATTGTGACAGTCTTTTGACAGCACCACCGACTACTCTGCATTGGCTCTCCTCATTAAACAATATCTATATTGATGGATGGACCCAATGGTTGTCACTTGGGCGTGAAAAAACCCAATGGTTGTTACTTGAGATTGATTCTCCCTGTGTGCTACAAAGTGTAAAAATCATGTATTGTGCTACCCTGTTTTCATTACCCAAAATTATTTGGAGCAGCATTTGTCTTCGATTCTTGGAACTTCAAGATCTTCCATCTCTCACTGCTTTTCCTACAGATGGTCTACCCACCTCATTGCAGTCACTTATAATTCGTCATTGTCCAAATTTAGCATTCCTTCCTCTTGAAACATGGGGCAATTACACATCTCTTGTGAAGTTGCAGTTAAGGAATAGTTGTCATACACTTACCTCCTTCCCATTGGATGGTTTCCCAACACTCCAAGATCTTTCCATTAATGGCTGTAAAAATCTGGAATCCATTTTTATTTCAGAAAGTTCTTCCGATCTCTCGTCAACCCTCCAATCATTTTCGGTACATAATTGTGATGCACTTAGATCATTGACTCTACCAATAGACACCCTGATCTCTCTTGAAAGTTTGTCTCTCGGAGATCTTCCAGAACTAACTTTACCATTTTGTAAAGGAGCTTGCCTACCTCCCAAATTACGTACTATTAATATTAAATCAGTGAGAATAACAACGCCTGTAGCTGAATGGGGTCTCCAACATCTTACTTCTCTTTCAAGTTTGGGTATCGGAGGTGATGATGATATTGTTAACACCTTGCTGAAGGAGCAGTTGCTGCCAATTTCCATCGTGACTTTGGGTATTTCTAATCTCTGTGAAATAAAATCCTTTGATGGAAATGGACTCCGACACCTATCCTCTCTTGAAAAACTTAGCTTTTTTGATTGTCCAAGGCTTGAGTCTCTGTCAAAAGACACTTTTCCATCCTCTCTTAAGATAATGCGCATCTGGGAATGCCCTCTGTTAGAAGCAAACTATAAAAGTCAGAGGTTGGAACAGTTGTCCATCCCAGTCGTAAGAATAAATGAGGAAGTGATAATATGAGGGAAGGGACGGAAAGAGAAGGGAAGGAAAATTTGCAATCCTGTTTCAGGTATGAGTTTCTTTTATGCATCTATCCATGAAGAATCGTTCAATTTTTCCTGTCGAACAATTCATAAAATAGTCAAGTTCATTTATAATAACCAACATTTCTTGAGATTTTGAAATTAATGGGTCTAAGACTTTGTTACACAATTTTCTCAACAAGTAAATGAAAACTAAAAGGTCTTTTGCATAAGTAGAAGTAGATTAAAATAAGAATCCAGATTGATTCTTGGTTCAATGTTTCAATGTAATGACAACTTGTTCCAGTAAAATATATATATATATATATATATATATATATATATATATACATATATATATATACACATATATATCCTAAGGTAATAATTTCAATGTCTATTTTACGCATTTACATGGATAAATAAATACAATTACAATTTGCAATTTTATCTTAGTGACAAGAACAAAAATATACTTTCATAAAATCCTATTGAAAATCATATTCTTGATCCTAGTTGAGATTAAGCTTATAATGTTTTTGAAGCAATTGTTAATTTTTATTCTTTTGTTGTTAATAGGTTTGTCATCGGTAAGACGTGCAAAGTGCATACACAGGGATTTGGTTCATCTTTTCATTTCTCTTAAGGAAGCAGCAGACGCGCTATAA
Protein sequence

>MS.gene94011.t1

MPMQIVGLNNLQTLTDFSVGKQDTGLSVKEVGKFPNLRGKLCIKNLQNVMDAIEAYDVNMRSKEDIEELELQWSKQTEDSRIEKDVLDMLQPSFNLRKLSISLYGGTSFPSWLGDPLFSNMVSLCISNCEYCLTLPPLGQLPSLKDLTIEGMTMETIGLEFYGMTVEPSISSFQPFQSLEILHISGMPNWKEWKHYESGEFGFPRLRILRLILCPKLKGHLPSHLSSIDTIMIDDCDSLLTAPPTTLHWLSSLNNIYIDGWTQWLSLGREKTQWLLLEIDSPCVLQSVKIMYCATLFSLPKIIWSSICLRFLELQDLPSLTAFPTDGLPTSLQSLIIRHCPNLAFLPLETWGNYTSLVKLQLRNSCHTLTSFPLDGFPTLQDLSINGCKNLESIFISESSSDLSSTLQSFSVHNCDALRSLTLPIDTLISLESLSLGDLPELTLPFCKGACLPPKLRTINIKSVRITTPVAEWGLQHLTSLSSLGIGGDDDIVNTLLKEQLLPISIVTLGISNLCLSSVRRAKCIHRDLVHLFISLKEAADAL