Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94076.t1 | XP_003614744.1 | 72.2 | 338 | 91 | 2 | 1 | 336 | 1 | 337 | 2.30E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94076.t1 | O22197 | 40.2 | 87 | 52 | 0 | 190 | 276 | 157 | 243 | 8.9e-14 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94076.t1 | G7K8T3 | 72.2 | 338 | 91 | 2 | 1 | 336 | 1 | 337 | 1.7e-106 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053776 | MS.gene94076 | 0.890136 | 1.29E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94076.t1 | MTR_5g058530 | 86.982 | 338 | 41 | 2 | 1 | 336 | 1 | 337 | 8.38e-156 | 440 |
| MS.gene94076.t1 | MTR_2g007340 | 43.421 | 76 | 42 | 1 | 208 | 283 | 187 | 261 | 4.45e-15 | 75.1 |
| MS.gene94076.t1 | MTR_5g088720 | 49.153 | 59 | 29 | 1 | 209 | 267 | 233 | 290 | 1.08e-14 | 74.7 |
| MS.gene94076.t1 | MTR_5g088720 | 49.153 | 59 | 29 | 1 | 209 | 267 | 192 | 249 | 1.09e-14 | 74.3 |
| MS.gene94076.t1 | MTR_0067s0100 | 50.847 | 59 | 28 | 1 | 209 | 267 | 177 | 234 | 1.14e-14 | 73.6 |
| MS.gene94076.t1 | MTR_5g088720 | 49.153 | 59 | 29 | 1 | 209 | 267 | 187 | 244 | 1.15e-14 | 73.9 |
| MS.gene94076.t1 | MTR_3g072630 | 49.153 | 59 | 29 | 1 | 209 | 267 | 208 | 265 | 1.06e-13 | 71.2 |
| MS.gene94076.t1 | MTR_1g051105 | 50.000 | 60 | 29 | 1 | 208 | 267 | 145 | 203 | 1.19e-13 | 70.1 |
| MS.gene94076.t1 | MTR_3g072630 | 49.153 | 59 | 29 | 1 | 209 | 267 | 208 | 265 | 1.59e-13 | 70.9 |
| MS.gene94076.t1 | MTR_4g064570 | 36.792 | 106 | 62 | 3 | 166 | 267 | 121 | 225 | 1.71e-13 | 70.9 |
| MS.gene94076.t1 | MTR_6g079660 | 43.333 | 60 | 34 | 0 | 208 | 267 | 220 | 279 | 9.38e-13 | 68.9 |
| MS.gene94076.t1 | MTR_7g074170 | 30.723 | 166 | 83 | 5 | 115 | 267 | 243 | 389 | 2.42e-12 | 68.2 |
| MS.gene94076.t1 | MTR_2g097620 | 32.075 | 106 | 67 | 3 | 166 | 267 | 129 | 233 | 3.90e-12 | 67.0 |
| MS.gene94076.t1 | MTR_5g080350 | 33.036 | 112 | 64 | 4 | 165 | 267 | 128 | 237 | 1.24e-11 | 65.5 |
| MS.gene94076.t1 | MTR_3g068005 | 47.458 | 59 | 30 | 1 | 209 | 267 | 183 | 240 | 1.47e-11 | 65.5 |
| MS.gene94076.t1 | MTR_5g041310 | 31.461 | 89 | 54 | 2 | 180 | 267 | 77 | 159 | 2.00e-11 | 63.2 |
| MS.gene94076.t1 | MTR_3g088080 | 48.936 | 47 | 24 | 0 | 218 | 264 | 33 | 79 | 5.64e-11 | 58.5 |
| MS.gene94076.t1 | MTR_3g025510 | 52.381 | 42 | 20 | 0 | 223 | 264 | 105 | 146 | 6.89e-11 | 60.5 |
| MS.gene94076.t1 | MTR_6g032960 | 42.308 | 52 | 30 | 0 | 216 | 267 | 229 | 280 | 7.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94076.t1 | AT1G60360 | 50.847 | 59 | 29 | 0 | 209 | 267 | 210 | 268 | 2.66e-15 | 76.3 |
| MS.gene94076.t1 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 5.52e-14 | 72.4 |
| MS.gene94076.t1 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 5.52e-14 | 72.4 |
| MS.gene94076.t1 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 5.52e-14 | 72.4 |
| MS.gene94076.t1 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 5.52e-14 | 72.4 |
| MS.gene94076.t1 | AT3G56580 | 49.153 | 59 | 30 | 0 | 209 | 267 | 172 | 230 | 8.96e-14 | 71.6 |
| MS.gene94076.t1 | AT3G56580 | 49.153 | 59 | 30 | 0 | 209 | 267 | 172 | 230 | 8.96e-14 | 71.6 |
| MS.gene94076.t1 | AT3G56580 | 49.153 | 59 | 30 | 0 | 209 | 267 | 172 | 230 | 8.96e-14 | 71.6 |
| MS.gene94076.t1 | AT3G19950 | 44.068 | 59 | 33 | 0 | 209 | 267 | 202 | 260 | 2.28e-13 | 70.5 |
| MS.gene94076.t1 | AT3G19950 | 44.068 | 59 | 33 | 0 | 209 | 267 | 260 | 318 | 2.79e-13 | 70.5 |
| MS.gene94076.t1 | AT3G19950 | 44.068 | 59 | 33 | 0 | 209 | 267 | 260 | 318 | 2.79e-13 | 70.5 |
| MS.gene94076.t1 | AT3G10815 | 49.153 | 59 | 29 | 1 | 209 | 267 | 108 | 165 | 9.01e-12 | 63.9 |
| MS.gene94076.t1 | AT5G08139 | 34.884 | 86 | 36 | 2 | 182 | 267 | 288 | 353 | 2.89e-11 | 64.3 |
| MS.gene94076.t1 | AT1G68180 | 38.667 | 75 | 40 | 3 | 223 | 292 | 138 | 211 | 3.66e-11 | 62.8 |
| MS.gene94076.t1 | AT1G18770 | 39.062 | 64 | 39 | 0 | 204 | 267 | 40 | 103 | 6.27e-11 | 59.3 |
| MS.gene94076.t1 | AT5G60820 | 48.000 | 50 | 26 | 0 | 218 | 267 | 367 | 416 | 7.16e-11 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAGTTGATTCGAGGTTC+TGG | 0.242316 | 5.4:+46050655 | None:intergenic |
| GGACAAAGCCAGTCGATTTC+AGG | 0.279931 | 5.4:+46050826 | None:intergenic |
| AATTCGGAGAAGATTGAAAA+AGG | 0.284032 | 5.4:+46050113 | None:intergenic |
| TTGATTCGAGGTTCTGGATT+TGG | 0.317733 | 5.4:+46050661 | None:intergenic |
| GTAAAACCTGTCCTGTTTGC+AGG | 0.319831 | 5.4:-46050249 | MS.gene94076:CDS |
| TTAAACTCTTCCATGCAAAT+AGG | 0.330482 | 5.4:+46050349 | None:intergenic |
| GTTTGCAGGCTTCAGTTAGA+TGG | 0.336723 | 5.4:-46050235 | MS.gene94076:CDS |
| ACTTGATGACGACGAGAGTT+TGG | 0.338571 | 5.4:-46050182 | MS.gene94076:CDS |
| GCAGGTTAATTCGAGGTTCT+TGG | 0.341486 | 5.4:+46050554 | None:intergenic |
| GAACTTGTATGTATGTTTGC+AGG | 0.345043 | 5.4:+46050300 | None:intergenic |
| ACCTTGGGGATTGTTGGCTT+TGG | 0.358255 | 5.4:+46051001 | None:intergenic |
| TGGCTTTGGCCATGGTTCAT+TGG | 0.360252 | 5.4:+46051015 | None:intergenic |
| CGTGGTAATGGCGGCGGTGG+TGG | 0.372860 | 5.4:+46050517 | None:intergenic |
| ATCACTATCACCGCGGAATC+CGG | 0.379126 | 5.4:-46050851 | MS.gene94076:CDS |
| AGCATAGCTTATACCACCTT+GGG | 0.385612 | 5.4:+46050986 | None:intergenic |
| ATTATTACCACTAGAATTCC+CGG | 0.391859 | 5.4:-46050584 | MS.gene94076:CDS |
| GGAAGTGGAGGAGGTGGTGG+TGG | 0.398311 | 5.4:+46050805 | None:intergenic |
| GGTAATGGCGGCGGTGGTGG+TGG | 0.403144 | 5.4:+46050520 | None:intergenic |
| TATACCACCTTGGGGATTGT+TGG | 0.405572 | 5.4:+46050995 | None:intergenic |
| GTTACTTGTGGTGGAATTTG+AGG | 0.415851 | 5.4:+46050151 | None:intergenic |
| AAAGGAAGTGGAGGAGGTGG+TGG | 0.431068 | 5.4:+46050802 | None:intergenic |
| CGGCCATGCGTGGTCAAAGA+AGG | 0.432038 | 5.4:+46050460 | None:intergenic |
| ATCCAGAACCTCGAATCAAC+TGG | 0.432042 | 5.4:-46050657 | MS.gene94076:CDS |
| CGAGGTTCTTGGTTTGAAGC+CGG | 0.437881 | 5.4:+46050565 | None:intergenic |
| TCTTCTGTAACATGAGAATT+CGG | 0.440931 | 5.4:+46050097 | None:intergenic |
| GGTAATAATGTTGGTGATGG+TGG | 0.445196 | 5.4:+46050598 | None:intergenic |
| CTTCTTTGACCACGCATGGC+CGG | 0.448017 | 5.4:-46050459 | MS.gene94076:CDS |
| GGGATTGTTGGCTTTGGCCA+TGG | 0.452073 | 5.4:+46051007 | None:intergenic |
| TCTGAACTGTCACCACTTGT+TGG | 0.452240 | 5.4:+46050958 | None:intergenic |
| CATGGATCTTGCCGTGGTAA+TGG | 0.454700 | 5.4:+46050505 | None:intergenic |
| AGCCAGTCGATTTCAGGATC+CGG | 0.465327 | 5.4:+46050832 | None:intergenic |
| TTGGCCATGGTTCATTGGCA+TGG | 0.467077 | 5.4:+46051020 | None:intergenic |
| TGCCGTGGTAATGGCGGCGG+TGG | 0.474383 | 5.4:+46050514 | None:intergenic |
| GAAGACCGCTGATTGATTTG+AGG | 0.479480 | 5.4:+46050712 | None:intergenic |
| GAGGTTCTTGGTTTGAAGCC+GGG | 0.484886 | 5.4:+46050566 | None:intergenic |
| TCTAACTGAAGCCTGCAAAC+AGG | 0.486588 | 5.4:+46050238 | None:intergenic |
| CATTACCACGGCAAGATCCA+TGG | 0.489389 | 5.4:-46050504 | MS.gene94076:CDS |
| GTGGTGGAATTTGAGGTTCA+AGG | 0.492705 | 5.4:+46050158 | None:intergenic |
| CTAGTTTGAGTTGCAGTACT+CGG | 0.492845 | 5.4:+46050904 | None:intergenic |
| TGCATGGAAGAGTTTAAACT+TGG | 0.493420 | 5.4:-46050343 | MS.gene94076:CDS |
| TGACTATGATCATTGTCATC+AGG | 0.501350 | 5.4:+46050436 | None:intergenic |
| AGTTCGAATGCATTCTTCGT+TGG | 0.502198 | 5.4:-46050282 | MS.gene94076:CDS |
| TTCCCTTCTTTGACCACGCA+TGG | 0.504178 | 5.4:-46050463 | MS.gene94076:CDS |
| CTCTCACTGTCCTATTTGCA+TGG | 0.509555 | 5.4:-46050359 | MS.gene94076:CDS |
| AGTGATGGATGTGGCGGAGA+AGG | 0.515249 | 5.4:+46050868 | None:intergenic |
| AACTTGTATGTATGTTTGCA+GGG | 0.516610 | 5.4:+46050301 | None:intergenic |
| AGAGAACTCCAGTTGATTCG+AGG | 0.517501 | 5.4:+46050649 | None:intergenic |
| GAATACTGCAGGTTAATTCG+AGG | 0.523262 | 5.4:+46050547 | None:intergenic |
| AAGGCGGTGGTGGCGGTGGT+AGG | 0.525691 | 5.4:+46050626 | None:intergenic |
| AATTCTAGTGGTAATAATGT+TGG | 0.527104 | 5.4:+46050589 | None:intergenic |
| CTGCAACTCAAACTAGTACA+TGG | 0.527248 | 5.4:-46050897 | MS.gene94076:CDS |
| AAGCATAGCTTATACCACCT+TGG | 0.528619 | 5.4:+46050985 | None:intergenic |
| CTGAAGCCTGCAAACAGGAC+AGG | 0.533487 | 5.4:+46050243 | None:intergenic |
| ATCCGGATCCTGAAATCGAC+TGG | 0.537087 | 5.4:-46050834 | MS.gene94076:CDS |
| GACAGTGCATGTGATGAGTT+AGG | 0.540580 | 5.4:-46050040 | MS.gene94076:CDS |
| GTCATCAGGCCGGCCATGCG+TGG | 0.545291 | 5.4:+46050450 | None:intergenic |
| AAACTATAAGTTACTTGTGG+TGG | 0.566404 | 5.4:+46050142 | None:intergenic |
| TCTTGCCGTGGTAATGGCGG+CGG | 0.567310 | 5.4:+46050511 | None:intergenic |
| TGCAAACTATAAGTTACTTG+TGG | 0.568220 | 5.4:+46050139 | None:intergenic |
| ACAGTTTGAAATTGTAGTGG+TGG | 0.569682 | 5.4:+46050745 | None:intergenic |
| ATTACCACGGCAAGATCCAT+GGG | 0.576450 | 5.4:-46050503 | MS.gene94076:CDS |
| CATGTTACAGAAGATGATGC+AGG | 0.577700 | 5.4:-46050088 | MS.gene94076:CDS |
| ATTCGAGGTTCTGGATTTGG+TGG | 0.583082 | 5.4:+46050664 | None:intergenic |
| GGCCATGCGTGGTCAAAGAA+GGG | 0.588446 | 5.4:+46050461 | None:intergenic |
| GTAATAATGTTGGTGATGGT+GGG | 0.591603 | 5.4:+46050599 | None:intergenic |
| GGATTCCGCGGTGATAGTGA+TGG | 0.595675 | 5.4:+46050853 | None:intergenic |
| TATGATCATTGTCATCAGGC+CGG | 0.596881 | 5.4:+46050440 | None:intergenic |
| GGATCTTGCCGTGGTAATGG+CGG | 0.598114 | 5.4:+46050508 | None:intergenic |
| GTATTAATGAAGCGATCCCA+TGG | 0.600266 | 5.4:+46050487 | None:intergenic |
| GTGGTGGTATTGAATACTGC+AGG | 0.605509 | 5.4:+46050536 | None:intergenic |
| TTTGAAGCCGGGAATTCTAG+TGG | 0.606185 | 5.4:+46050577 | None:intergenic |
| TGCAGGGTAACTGACATGCT+TGG | 0.609256 | 5.4:+46050317 | None:intergenic |
| AGTGGTAATAATGTTGGTGA+TGG | 0.611979 | 5.4:+46050595 | None:intergenic |
| TTTACAGTTTGAAATTGTAG+TGG | 0.617336 | 5.4:+46050742 | None:intergenic |
| GGTTGTGATGTCAGTCGCGA+CGG | 0.622231 | 5.4:+46050685 | None:intergenic |
| GTGCATGTGATGAGTTAGGT+TGG | 0.625552 | 5.4:-46050036 | MS.gene94076:CDS |
| CACCACCGCCGCCATTACCA+CGG | 0.628412 | 5.4:-46050516 | MS.gene94076:CDS |
| CGATCCCATGGATCTTGCCG+TGG | 0.631682 | 5.4:+46050499 | None:intergenic |
| CGCGGTGATAGTGATGGATG+TGG | 0.637131 | 5.4:+46050859 | None:intergenic |
| CTATGCTTTATACCAACAAG+TGG | 0.639520 | 5.4:-46050970 | MS.gene94076:CDS |
| GCCAAAGCCAACAATCCCCA+AGG | 0.648809 | 5.4:-46051002 | MS.gene94076:CDS |
| ATTTCAGGATCCGGATTCCG+CGG | 0.649119 | 5.4:+46050841 | None:intergenic |
| TCAGTTCCTTCGAAGTCACA+TGG | 0.668668 | 5.4:-46050416 | MS.gene94076:CDS |
| CAGAACCTCAAATCAATCAG+CGG | 0.669615 | 5.4:-46050717 | MS.gene94076:CDS |
| ATAGCCATGCCAATGAACCA+TGG | 0.685861 | 5.4:-46051024 | None:intergenic |
| GCATAGCTTATACCACCTTG+GGG | 0.690365 | 5.4:+46050987 | None:intergenic |
| GATCGTACTGATAGTCGTGA+TGG | 0.692783 | 5.4:+46050772 | None:intergenic |
| AAAGCCAACAATCCCCAAGG+TGG | 0.707176 | 5.4:-46050999 | MS.gene94076:CDS |
| GGTGATAGTGATGGATGTGG+CGG | 0.741036 | 5.4:+46050862 | None:intergenic |
| CACATCCATCACTATCACCG+CGG | 0.756606 | 5.4:-46050858 | MS.gene94076:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTCTAGTGGTAATAATGT+TGG | + | chr5.4:46050462-46050481 | None:intergenic | 25.0% |
| !! | TTTACAGTTTGAAATTGTAG+TGG | + | chr5.4:46050309-46050328 | None:intergenic | 25.0% |
| AAACTATAAGTTACTTGTGG+TGG | + | chr5.4:46050909-46050928 | None:intergenic | 30.0% | |
| AACTTGTATGTATGTTTGCA+GGG | + | chr5.4:46050750-46050769 | None:intergenic | 30.0% | |
| AATTCGGAGAAGATTGAAAA+AGG | + | chr5.4:46050938-46050957 | None:intergenic | 30.0% | |
| ATTATTACCACTAGAATTCC+CGG | - | chr5.4:46050464-46050483 | MS.gene94076:CDS | 30.0% | |
| TCTTCTGTAACATGAGAATT+CGG | + | chr5.4:46050954-46050973 | None:intergenic | 30.0% | |
| TGCAAACTATAAGTTACTTG+TGG | + | chr5.4:46050912-46050931 | None:intergenic | 30.0% | |
| TTAAACTCTTCCATGCAAAT+AGG | + | chr5.4:46050702-46050721 | None:intergenic | 30.0% | |
| CTATGCTTTATACCAACAAG+TGG | - | chr5.4:46050078-46050097 | MS.gene94076:CDS | 35.0% | |
| GAACTTGTATGTATGTTTGC+AGG | + | chr5.4:46050751-46050770 | None:intergenic | 35.0% | |
| GATGGTGTAAAAAAAGGAAG+TGG | + | chr5.4:46050261-46050280 | None:intergenic | 35.0% | |
| TGACTATGATCATTGTCATC+AGG | + | chr5.4:46050615-46050634 | None:intergenic | 35.0% | |
| TGCATGGAAGAGTTTAAACT+TGG | - | chr5.4:46050705-46050724 | MS.gene94076:CDS | 35.0% | |
| ! | ACAGTTTGAAATTGTAGTGG+TGG | + | chr5.4:46050306-46050325 | None:intergenic | 35.0% |
| ! | AGTCGTGATGGTGTAAAAAA+AGG | + | chr5.4:46050267-46050286 | None:intergenic | 35.0% |
| ! | AGTGGTAATAATGTTGGTGA+TGG | + | chr5.4:46050456-46050475 | None:intergenic | 35.0% |
| !! | GTAATAATGTTGGTGATGGT+GGG | + | chr5.4:46050452-46050471 | None:intergenic | 35.0% |
| !!! | CTTCAGTTAGATGGTTTTGA+AGG | - | chr5.4:46050822-46050841 | MS.gene94076:CDS | 35.0% |
| !!! | TTAGATGGTTTTGAAGGACA+AGG | - | chr5.4:46050828-46050847 | MS.gene94076:CDS | 35.0% |
| AAGCATAGCTTATACCACCT+TGG | + | chr5.4:46050066-46050085 | None:intergenic | 40.0% | |
| AGCATAGCTTATACCACCTT+GGG | + | chr5.4:46050065-46050084 | None:intergenic | 40.0% | |
| AGTTCGAATGCATTCTTCGT+TGG | - | chr5.4:46050766-46050785 | MS.gene94076:CDS | 40.0% | |
| CAGAACCTCAAATCAATCAG+CGG | - | chr5.4:46050331-46050350 | MS.gene94076:CDS | 40.0% | |
| CATGTTACAGAAGATGATGC+AGG | - | chr5.4:46050960-46050979 | MS.gene94076:CDS | 40.0% | |
| CTGCAACTCAAACTAGTACA+TGG | - | chr5.4:46050151-46050170 | MS.gene94076:CDS | 40.0% | |
| GAATACTGCAGGTTAATTCG+AGG | + | chr5.4:46050504-46050523 | None:intergenic | 40.0% | |
| GGTGTAAAAAAAGGAAGTGG+AGG | + | chr5.4:46050258-46050277 | None:intergenic | 40.0% | |
| GTAAAAAAAGGAAGTGGAGG+AGG | + | chr5.4:46050255-46050274 | None:intergenic | 40.0% | |
| GTATTAATGAAGCGATCCCA+TGG | + | chr5.4:46050564-46050583 | None:intergenic | 40.0% | |
| TATGATCATTGTCATCAGGC+CGG | + | chr5.4:46050611-46050630 | None:intergenic | 40.0% | |
| ! | GTTACTTGTGGTGGAATTTG+AGG | + | chr5.4:46050900-46050919 | None:intergenic | 40.0% |
| ! | TTTTCACCATGTGACTTCGA+AGG | + | chr5.4:46050641-46050660 | None:intergenic | 40.0% |
| !! | CTAGTTTGAGTTGCAGTACT+CGG | + | chr5.4:46050147-46050166 | None:intergenic | 40.0% |
| !! | GGTAATAATGTTGGTGATGG+TGG | + | chr5.4:46050453-46050472 | None:intergenic | 40.0% |
| !! | TTGATTCGAGGTTCTGGATT+TGG | + | chr5.4:46050390-46050409 | None:intergenic | 40.0% |
| AAAAAAGGAAGTGGAGGAGG+TGG | + | chr5.4:46050252-46050271 | None:intergenic | 45.0% | |
| ATCCAGAACCTCGAATCAAC+TGG | - | chr5.4:46050391-46050410 | MS.gene94076:CDS | 45.0% | |
| ATTACCACGGCAAGATCCAT+GGG | - | chr5.4:46050545-46050564 | MS.gene94076:CDS | 45.0% | |
| CTCTCACTGTCCTATTTGCA+TGG | - | chr5.4:46050689-46050708 | MS.gene94076:CDS | 45.0% | |
| GACAGTGCATGTGATGAGTT+AGG | - | chr5.4:46051008-46051027 | MS.gene94076:CDS | 45.0% | |
| GCAGGTTAATTCGAGGTTCT+TGG | + | chr5.4:46050497-46050516 | None:intergenic | 45.0% | |
| GCATAGCTTATACCACCTTG+GGG | + | chr5.4:46050064-46050083 | None:intergenic | 45.0% | |
| GTAAAACCTGTCCTGTTTGC+AGG | - | chr5.4:46050799-46050818 | MS.gene94076:CDS | 45.0% | |
| GTGCATGTGATGAGTTAGGT+TGG | - | chr5.4:46051012-46051031 | MS.gene94076:CDS | 45.0% | |
| GTTTGCAGGCTTCAGTTAGA+TGG | - | chr5.4:46050813-46050832 | MS.gene94076:CDS | 45.0% | |
| TATACCACCTTGGGGATTGT+TGG | + | chr5.4:46050056-46050075 | None:intergenic | 45.0% | |
| TCAGTTCCTTCGAAGTCACA+TGG | - | chr5.4:46050632-46050651 | MS.gene94076:CDS | 45.0% | |
| TCTAACTGAAGCCTGCAAAC+AGG | + | chr5.4:46050813-46050832 | None:intergenic | 45.0% | |
| TCTGAACTGTCACCACTTGT+TGG | + | chr5.4:46050093-46050112 | None:intergenic | 45.0% | |
| ! | GATCGTACTGATAGTCGTGA+TGG | + | chr5.4:46050279-46050298 | None:intergenic | 45.0% |
| ! | GCAAACAGGACAGGTTTTAC+TGG | + | chr5.4:46050799-46050818 | None:intergenic | 45.0% |
| ! | GTGGTGGAATTTGAGGTTCA+AGG | + | chr5.4:46050893-46050912 | None:intergenic | 45.0% |
| ! | GTGGTGGTATTGAATACTGC+AGG | + | chr5.4:46050515-46050534 | None:intergenic | 45.0% |
| ! | TTTGAAGCCGGGAATTCTAG+TGG | + | chr5.4:46050474-46050493 | None:intergenic | 45.0% |
| !! | ACTTGATGACGACGAGAGTT+TGG | - | chr5.4:46050866-46050885 | MS.gene94076:CDS | 45.0% |
| !! | AGAGAACTCCAGTTGATTCG+AGG | + | chr5.4:46050402-46050421 | None:intergenic | 45.0% |
| !! | ATTCGAGGTTCTGGATTTGG+TGG | + | chr5.4:46050387-46050406 | None:intergenic | 45.0% |
| !! | GAAGACCGCTGATTGATTTG+AGG | + | chr5.4:46050339-46050358 | None:intergenic | 45.0% |
| !! | GTTGGTGATGGTGGGAAAAA+AGG | + | chr5.4:46050444-46050463 | None:intergenic | 45.0% |
| AAAGCCAACAATCCCCAAGG+TGG | - | chr5.4:46050049-46050068 | MS.gene94076:CDS | 50.0% | |
| ATCACTATCACCGCGGAATC+CGG | - | chr5.4:46050197-46050216 | MS.gene94076:CDS | 50.0% | |
| ATCCGGATCCTGAAATCGAC+TGG | - | chr5.4:46050214-46050233 | MS.gene94076:CDS | 50.0% | |
| ATTTCAGGATCCGGATTCCG+CGG | + | chr5.4:46050210-46050229 | None:intergenic | 50.0% | |
| CACATCCATCACTATCACCG+CGG | - | chr5.4:46050190-46050209 | MS.gene94076:CDS | 50.0% | |
| CATGGATCTTGCCGTGGTAA+TGG | + | chr5.4:46050546-46050565 | None:intergenic | 50.0% | |
| CATTACCACGGCAAGATCCA+TGG | - | chr5.4:46050544-46050563 | MS.gene94076:CDS | 50.0% | |
| TGCAGGGTAACTGACATGCT+TGG | + | chr5.4:46050734-46050753 | None:intergenic | 50.0% | |
| TTCCCTTCTTTGACCACGCA+TGG | - | chr5.4:46050585-46050604 | MS.gene94076:CDS | 50.0% | |
| ! | AGCCAGTCGATTTCAGGATC+CGG | + | chr5.4:46050219-46050238 | None:intergenic | 50.0% |
| ! | CGAGGTTCTTGGTTTGAAGC+CGG | + | chr5.4:46050486-46050505 | None:intergenic | 50.0% |
| ! | GAGGTTCTTGGTTTGAAGCC+GGG | + | chr5.4:46050485-46050504 | None:intergenic | 50.0% |
| ! | GGACAAAGCCAGTCGATTTC+AGG | + | chr5.4:46050225-46050244 | None:intergenic | 50.0% |
| !! | ACCTTGGGGATTGTTGGCTT+TGG | + | chr5.4:46050050-46050069 | None:intergenic | 50.0% |
| !! | CTCCAGTTGATTCGAGGTTC+TGG | + | chr5.4:46050396-46050415 | None:intergenic | 50.0% |
| !! | GGTGATAGTGATGGATGTGG+CGG | + | chr5.4:46050189-46050208 | None:intergenic | 50.0% |
| !! | GGTGATGGTGGGAAAAAAGG+CGG | + | chr5.4:46050441-46050460 | None:intergenic | 50.0% |
| !! | TGGCTTTGGCCATGGTTCAT+TGG | + | chr5.4:46050036-46050055 | None:intergenic | 50.0% |
| AAAGGAAGTGGAGGAGGTGG+TGG | + | chr5.4:46050249-46050268 | None:intergenic | 55.0% | |
| CTGAAGCCTGCAAACAGGAC+AGG | + | chr5.4:46050808-46050827 | None:intergenic | 55.0% | |
| CTTCTTTGACCACGCATGGC+CGG | - | chr5.4:46050589-46050608 | MS.gene94076:CDS | 55.0% | |
| GCCAAAGCCAACAATCCCCA+AGG | - | chr5.4:46050046-46050065 | MS.gene94076:CDS | 55.0% | |
| GGCCATGCGTGGTCAAAGAA+GGG | + | chr5.4:46050590-46050609 | None:intergenic | 55.0% | |
| GGTTGTGATGTCAGTCGCGA+CGG | + | chr5.4:46050366-46050385 | None:intergenic | 55.0% | |
| ! | GGATTCCGCGGTGATAGTGA+TGG | + | chr5.4:46050198-46050217 | None:intergenic | 55.0% |
| !! | AGTGATGGATGTGGCGGAGA+AGG | + | chr5.4:46050183-46050202 | None:intergenic | 55.0% |
| !! | CGCGGTGATAGTGATGGATG+TGG | + | chr5.4:46050192-46050211 | None:intergenic | 55.0% |
| !! | GATGGTGGGAAAAAAGGCGG+TGG | + | chr5.4:46050438-46050457 | None:intergenic | 55.0% |
| !! | GGATCTTGCCGTGGTAATGG+CGG | + | chr5.4:46050543-46050562 | None:intergenic | 55.0% |
| !! | GGGATTGTTGGCTTTGGCCA+TGG | + | chr5.4:46050044-46050063 | None:intergenic | 55.0% |
| CGATCCCATGGATCTTGCCG+TGG | + | chr5.4:46050552-46050571 | None:intergenic | 60.0% | |
| CGGCCATGCGTGGTCAAAGA+AGG | + | chr5.4:46050591-46050610 | None:intergenic | 60.0% | |
| GGTGGGAAAAAAGGCGGTGG+TGG | + | chr5.4:46050435-46050454 | None:intergenic | 60.0% | |
| ! | GGGAAAAAAGGCGGTGGTGG+CGG | + | chr5.4:46050432-46050451 | None:intergenic | 60.0% |
| !! | AAAAAAGGCGGTGGTGGCGG+TGG | + | chr5.4:46050429-46050448 | None:intergenic | 60.0% |
| !! | TCTTGCCGTGGTAATGGCGG+CGG | + | chr5.4:46050540-46050559 | None:intergenic | 60.0% |
| CACCACCGCCGCCATTACCA+CGG | - | chr5.4:46050532-46050551 | MS.gene94076:CDS | 65.0% | |
| ! | GGAAGTGGAGGAGGTGGTGG+TGG | + | chr5.4:46050246-46050265 | None:intergenic | 65.0% |
| GTCATCAGGCCGGCCATGCG+TGG | + | chr5.4:46050601-46050620 | None:intergenic | 70.0% | |
| ! | GGTAATGGCGGCGGTGGTGG+TGG | + | chr5.4:46050531-46050550 | None:intergenic | 70.0% |
| !! | AAGGCGGTGGTGGCGGTGGT+AGG | + | chr5.4:46050425-46050444 | None:intergenic | 70.0% |
| !! | CGTGGTAATGGCGGCGGTGG+TGG | + | chr5.4:46050534-46050553 | None:intergenic | 70.0% |
| !! | TGCCGTGGTAATGGCGGCGG+TGG | + | chr5.4:46050537-46050556 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 46050030 | 46051040 | 46050030 | ID=MS.gene94076 |
| chr5.4 | mRNA | 46050030 | 46051040 | 46050030 | ID=MS.gene94076.t1;Parent=MS.gene94076 |
| chr5.4 | exon | 46050030 | 46051040 | 46050030 | ID=MS.gene94076.t1.exon1;Parent=MS.gene94076.t1 |
| chr5.4 | CDS | 46050030 | 46051040 | 46050030 | ID=cds.MS.gene94076.t1;Parent=MS.gene94076.t1 |
| Gene Sequence |
| Protein sequence |
