Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94142.t1 | RHN75587.1 | 77.1 | 375 | 47 | 3 | 26 | 365 | 296 | 666 | 1.10E-130 | 476.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94142.t1 | A0A396JKI7 | 77.1 | 375 | 47 | 3 | 26 | 365 | 296 | 666 | 8.1e-131 | 476.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060036 | MS.gene94142 | 0.806572 | 7.71E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94142.t1 | MTR_3g005890 | 92.857 | 112 | 5 | 1 | 254 | 365 | 18 | 126 | 1.83e-60 | 191 |
| MS.gene94142.t1 | MTR_2g026970 | 71.795 | 117 | 30 | 1 | 236 | 352 | 3 | 116 | 5.58e-47 | 157 |
| MS.gene94142.t1 | MTR_3g463980 | 87.640 | 89 | 11 | 0 | 242 | 330 | 73 | 161 | 9.93e-43 | 146 |
| MS.gene94142.t1 | MTR_4g029740 | 86.486 | 74 | 10 | 0 | 123 | 196 | 129 | 202 | 5.14e-40 | 142 |
| MS.gene94142.t1 | MTR_5g062110 | 86.250 | 80 | 8 | 1 | 286 | 365 | 228 | 304 | 5.25e-36 | 133 |
| MS.gene94142.t1 | MTR_1g103480 | 84.416 | 77 | 9 | 1 | 289 | 365 | 11 | 84 | 1.03e-35 | 125 |
| MS.gene94142.t1 | MTR_5g046450 | 88.571 | 70 | 5 | 1 | 296 | 365 | 1 | 67 | 1.78e-33 | 119 |
| MS.gene94142.t1 | MTR_6g040280 | 88.333 | 60 | 7 | 0 | 306 | 365 | 79 | 138 | 3.85e-28 | 107 |
| MS.gene94142.t1 | MTR_1g077860 | 50.769 | 130 | 42 | 3 | 229 | 358 | 52 | 159 | 2.07e-26 | 103 |
| MS.gene94142.t1 | MTR_6g024130 | 79.661 | 59 | 12 | 0 | 59 | 117 | 90 | 148 | 1.33e-25 | 102 |
| MS.gene94142.t1 | MTR_5g045335 | 53.968 | 63 | 15 | 1 | 296 | 358 | 1 | 49 | 4.93e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 87 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGACTCCATGAATTTC+TGG | 0.169206 | 6.4:-35020310 | None:intergenic |
| GTCAGATAACTTCATCTTCT+TGG | 0.176800 | 6.4:+35020007 | MS.gene94142:CDS |
| CTTGTGGTATAATGAGTTTC+AGG | 0.261701 | 6.4:+35018429 | MS.gene94142:CDS |
| GTACCCGATACATCGTATTT+TGG | 0.275012 | 6.4:-35019036 | None:intergenic |
| AAAATTGGGAAGATAGTAAA+TGG | 0.294207 | 6.4:+35019116 | MS.gene94142:CDS |
| AAAGGACGCATATATGGTTT+AGG | 0.295825 | 6.4:+35020053 | MS.gene94142:CDS |
| ATCCTACTGATAGGCGTATA+TGG | 0.311286 | 6.4:+35018184 | MS.gene94142:CDS |
| TCGACCTCATCGTTCGAGTT+AGG | 0.316253 | 6.4:+35020361 | MS.gene94142:CDS |
| AACGTCTGTTTCAAGGGAAT+TGG | 0.340581 | 6.4:+35018362 | MS.gene94142:CDS |
| TTGGAGTAGAGTGGGGAGAT+TGG | 0.360486 | 6.4:-35018041 | None:intergenic |
| TTACCATCTGATGTTGTATC+TGG | 0.370930 | 6.4:+35018099 | MS.gene94142:CDS |
| TGGGGAGATTGGATATTTGT+AGG | 0.384075 | 6.4:-35018030 | None:intergenic |
| GACAAGAAAGGACGCATATA+TGG | 0.389651 | 6.4:+35020047 | MS.gene94142:CDS |
| TTCATCTTCTTGGATGTAGT+TGG | 0.389790 | 6.4:+35020017 | MS.gene94142:CDS |
| TGATCTTATGTTTCTTCACT+TGG | 0.403582 | 6.4:+35019760 | MS.gene94142:CDS |
| AAGGACGCATATATGGTTTA+GGG | 0.409147 | 6.4:+35020054 | MS.gene94142:CDS |
| GGACAACTTATACAGAGTTA+AGG | 0.429494 | 6.4:+35018383 | MS.gene94142:CDS |
| ATCTTCTTGGATGTAGTTGG+AGG | 0.431519 | 6.4:+35020020 | MS.gene94142:CDS |
| TTTGTAGGTATTTGAGAAGT+GGG | 0.434050 | 6.4:-35018015 | None:intergenic |
| CAAAATAGAAGATCCTTTGA+TGG | 0.442419 | 6.4:+35019163 | MS.gene94142:CDS |
| ATTATGAAACGTCTGTTTCA+AGG | 0.445328 | 6.4:+35018355 | MS.gene94142:CDS |
| TGAGATGCCGTCAGATGATC+TGG | 0.458884 | 6.4:-35020108 | None:intergenic |
| CATCTGAATATGAGCATATG+AGG | 0.460761 | 6.4:+35020132 | MS.gene94142:CDS |
| ATGTGGACTTGGAGTAGAGT+GGG | 0.464757 | 6.4:-35018049 | None:intergenic |
| CAAGAGGATTCGCGATTGCT+CGG | 0.471159 | 6.4:+35020278 | MS.gene94142:CDS |
| CTCGAACGATGAGGTCGATA+AGG | 0.472045 | 6.4:-35020356 | None:intergenic |
| GATGATTCGTATCCGATAGC+TGG | 0.472618 | 6.4:+35018153 | MS.gene94142:CDS |
| AGAGCAGTTCCAGAAATTCA+TGG | 0.480303 | 6.4:+35020301 | MS.gene94142:CDS |
| ATGGTCCATTGCACACTTGT+GGG | 0.489965 | 6.4:+35019182 | MS.gene94142:CDS |
| ACGATGTATCGGGTACGAAA+AGG | 0.490092 | 6.4:+35019043 | MS.gene94142:CDS |
| GATGGTCCATTGCACACTTG+TGG | 0.491816 | 6.4:+35019181 | MS.gene94142:CDS |
| ATTTGTAGGTATTTGAGAAG+TGG | 0.510056 | 6.4:-35018016 | None:intergenic |
| GGAATTAATTCGTGCATCAC+AGG | 0.512276 | 6.4:+35020217 | MS.gene94142:CDS |
| TCTTACGTTAATTGTGGTCC+CGG | 0.513796 | 6.4:-35018213 | None:intergenic |
| GGTACCAAAATACGATGTAT+CGG | 0.518739 | 6.4:+35019032 | MS.gene94142:CDS |
| ACGTTAATTGTGGTCCCGGA+CGG | 0.520902 | 6.4:-35018209 | None:intergenic |
| GGAGTACAGATCCTACTGAT+AGG | 0.525529 | 6.4:+35018175 | MS.gene94142:CDS |
| TATCATCATAAGGCATCTGA+TGG | 0.529469 | 6.4:+35019010 | MS.gene94142:intron |
| TTATGAAACGTCTGTTTCAA+GGG | 0.535892 | 6.4:+35018356 | MS.gene94142:CDS |
| TAGGCGTATATGGATCCGTC+CGG | 0.536740 | 6.4:+35018194 | MS.gene94142:CDS |
| TGTAGGATGAATATGAAAGA+CGG | 0.549145 | 6.4:+35019928 | MS.gene94142:intron |
| CATCAGATGGTAAATGTGGC+GGG | 0.550269 | 6.4:-35018089 | None:intergenic |
| AGCAGAAAACATGGAACTCA+AGG | 0.554917 | 6.4:+35020175 | MS.gene94142:CDS |
| ACAAGGATCTTGCGGACTTG+TGG | 0.555586 | 6.4:+35018413 | MS.gene94142:CDS |
| GATAAGGAGGTAGATGTGAA+TGG | 0.555984 | 6.4:-35020340 | None:intergenic |
| GATGTGGACTTGGAGTAGAG+TGG | 0.556522 | 6.4:-35018050 | None:intergenic |
| GTTGGAGGAGTCGACAAGAA+AGG | 0.560231 | 6.4:+35020035 | MS.gene94142:CDS |
| GTACCAAAATACGATGTATC+GGG | 0.561361 | 6.4:+35019033 | MS.gene94142:CDS |
| AGTGTGCAATGGACCATCAA+AGG | 0.564752 | 6.4:-35019176 | None:intergenic |
| GGATCTGTACTCCCAGCTAT+CGG | 0.570993 | 6.4:-35018165 | None:intergenic |
| CCATCTGATGTTGTATCTGG+TGG | 0.573474 | 6.4:+35018102 | MS.gene94142:CDS |
| CTCATATGCTCATATTCAGA+TGG | 0.573783 | 6.4:-35020131 | None:intergenic |
| ATGATTCGTATCCGATAGCT+GGG | 0.576198 | 6.4:+35018154 | MS.gene94142:CDS |
| TAAAATGTCAGCAGAAAACA+TGG | 0.576892 | 6.4:+35020166 | MS.gene94142:CDS |
| GTATTAGAAAGATGTGGACT+TGG | 0.580079 | 6.4:-35018060 | None:intergenic |
| TCAGATGATCTGGATGAAGA+AGG | 0.580244 | 6.4:-35020098 | None:intergenic |
| TTGGGAAGATAGTAAATGGA+AGG | 0.581599 | 6.4:+35019120 | MS.gene94142:CDS |
| AGGAACTCACAGCAAACAGA+GGG | 0.583307 | 6.4:+35019960 | MS.gene94142:CDS |
| CCACCAGATACAACATCAGA+TGG | 0.589534 | 6.4:-35018102 | None:intergenic |
| TGTGGACTTGGAGTAGAGTG+GGG | 0.589602 | 6.4:-35018048 | None:intergenic |
| AAGGAATAGACAAAGGCGAA+TGG | 0.591694 | 6.4:+35019062 | MS.gene94142:CDS |
| AGATGAAGTTATCTGACTGA+TGG | 0.594680 | 6.4:-35020001 | None:intergenic |
| GCAGTCACAACAGTCACAAG+AGG | 0.603156 | 6.4:+35020262 | MS.gene94142:CDS |
| TAATCTTTGTAATGACACGT+GGG | 0.614350 | 6.4:-35018336 | None:intergenic |
| GAACGATGAGGTCGATAAGG+AGG | 0.615114 | 6.4:-35020353 | None:intergenic |
| ACATCAGATGGTAAATGTGG+CGG | 0.618826 | 6.4:-35018090 | None:intergenic |
| ATCATCATAAGGCATCTGAT+GGG | 0.619211 | 6.4:+35019011 | MS.gene94142:intron |
| ACAACATCAGATGGTAAATG+TGG | 0.625680 | 6.4:-35018093 | None:intergenic |
| CTATGTGTATTAGAAAGATG+TGG | 0.629289 | 6.4:-35018066 | None:intergenic |
| GGAGCGGTTGAAGACTAATG+AGG | 0.631387 | 6.4:+35020196 | MS.gene94142:CDS |
| AGGCGTATATGGATCCGTCC+GGG | 0.647300 | 6.4:+35018195 | MS.gene94142:CDS |
| TCTTCATCCAGATCATCTGA+CGG | 0.649115 | 6.4:+35020101 | MS.gene94142:CDS |
| ATAATCTTTGTAATGACACG+TGG | 0.653388 | 6.4:-35018337 | None:intergenic |
| TGATCCTAACTCGAACGATG+AGG | 0.654355 | 6.4:-35020365 | None:intergenic |
| ATTAATTCGTGCATCACAGG+AGG | 0.654566 | 6.4:+35020220 | MS.gene94142:CDS |
| ATCTTTGTAATGACACGTGG+GGG | 0.660511 | 6.4:-35018334 | None:intergenic |
| ATTGACCCACAAGTGTGCAA+TGG | 0.663699 | 6.4:-35019187 | None:intergenic |
| ATCCATATACGCCTATCAGT+AGG | 0.665567 | 6.4:-35018186 | None:intergenic |
| GTACGAAAAGGAATAGACAA+AGG | 0.669707 | 6.4:+35019055 | MS.gene94142:CDS |
| CATATATGGTTTAGGGACAG+AGG | 0.669847 | 6.4:+35020061 | MS.gene94142:CDS |
| AATCTTTGTAATGACACGTG+GGG | 0.669948 | 6.4:-35018335 | None:intergenic |
| GAACTCACAGCAAACAGAGG+GGG | 0.673398 | 6.4:+35019962 | MS.gene94142:CDS |
| CGTGATGATGATGATGCATG+TGG | 0.686754 | 6.4:-35018129 | None:intergenic |
| AGATAGTAAATGGAAGGACA+AGG | 0.688548 | 6.4:+35019126 | MS.gene94142:CDS |
| AAGGAACTCACAGCAAACAG+AGG | 0.691922 | 6.4:+35019959 | MS.gene94142:CDS |
| AAAACATGGAACTCAAGGAG+CGG | 0.694858 | 6.4:+35020180 | MS.gene94142:CDS |
| GGAACTCACAGCAAACAGAG+GGG | 0.750377 | 6.4:+35019961 | MS.gene94142:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAGATTAGTATTA+TGG | - | chr6.4:35019289-35019308 | None:intergenic | 10.0% |
| !!! | CTTTTTAATTTTGTTTTTAT+AGG | + | chr6.4:35018293-35018312 | MS.gene94142:intron | 10.0% |
| !! | CTAGTTATTATAGAATTAAA+TGG | - | chr6.4:35018255-35018274 | None:intergenic | 15.0% |
| !! | TTAAAAAGAGATTAAGAAAA+GGG | - | chr6.4:35018778-35018797 | None:intergenic | 15.0% |
| !! | TTAAAAAGTAGTAAAATACA+AGG | - | chr6.4:35018281-35018300 | None:intergenic | 15.0% |
| !! | TTTAAAAAGAGATTAAGAAA+AGG | - | chr6.4:35018779-35018798 | None:intergenic | 15.0% |
| !!! | TAATTTGTTTAAGTTGTTAT+TGG | + | chr6.4:35019825-35019844 | MS.gene94142:intron | 15.0% |
| !!! | TTTTATGTTTATTTGACAAA+AGG | - | chr6.4:35019466-35019485 | None:intergenic | 15.0% |
| !! | AAAAAATCTTACGTTAATTG+TGG | - | chr6.4:35018222-35018241 | None:intergenic | 20.0% |
| !! | ACAAGCAATGTAAATAATAT+AGG | - | chr6.4:35018935-35018954 | None:intergenic | 20.0% |
| !! | CTTAGTTATTAATTAAAAGC+TGG | + | chr6.4:35019799-35019818 | MS.gene94142:intron | 20.0% |
| !! | GTAAATAATATAGGATAAAC+CGG | - | chr6.4:35018926-35018945 | None:intergenic | 20.0% |
| !!! | CATTTTTTATTTGGAATTGT+CGG | + | chr6.4:35018515-35018534 | MS.gene94142:intron | 20.0% |
| ! | AAAACAATTATAGCACATGA+TGG | - | chr6.4:35019633-35019652 | None:intergenic | 25.0% |
| ! | AAAATTGGGAAGATAGTAAA+TGG | + | chr6.4:35019116-35019135 | MS.gene94142:CDS | 25.0% |
| ! | AAATAGAAACAAGAGAATAG+TGG | + | chr6.4:35018840-35018859 | MS.gene94142:intron | 25.0% |
| ! | ATAAAGACACACAAAATGAA+AGG | + | chr6.4:35019363-35019382 | MS.gene94142:intron | 25.0% |
| ! | ATGCATAACGTTAAAAACTA+TGG | - | chr6.4:35019701-35019720 | None:intergenic | 25.0% |
| ! | CAGCAATTCCAAATAAAAAA+TGG | - | chr6.4:35018558-35018577 | None:intergenic | 25.0% |
| ! | CGACAATTCCAAATAAAAAA+TGG | - | chr6.4:35018517-35018536 | None:intergenic | 25.0% |
| ! | CTAGAATTAGTTATATCCTT+TGG | + | chr6.4:35019500-35019519 | MS.gene94142:intron | 25.0% |
| ! | TGAAAAACTGGAACAAAATT+GGG | + | chr6.4:35019102-35019121 | MS.gene94142:CDS | 25.0% |
| !! | TCATGTGCTATAATTGTTTT+TGG | + | chr6.4:35019633-35019652 | MS.gene94142:intron | 25.0% |
| !!! | CATTTTTTATTTGGAATTGC+TGG | + | chr6.4:35018556-35018575 | MS.gene94142:intron | 25.0% |
| !!! | TCTCTAGTCCATTTTTTATT+TGG | + | chr6.4:35018547-35018566 | MS.gene94142:intron | 25.0% |
| !!! | TTGTTTAAGTTGTTATTGGT+TGG | + | chr6.4:35019829-35019848 | MS.gene94142:intron | 25.0% |
| AGAGAAGACTTATCATCATA+AGG | + | chr6.4:35019000-35019019 | MS.gene94142:intron | 30.0% | |
| AGAGTTAAGGAAAAATGACA+AGG | + | chr6.4:35018396-35018415 | MS.gene94142:CDS | 30.0% | |
| AGGGCTGTATATATGTTAAT+TGG | - | chr6.4:35018700-35018719 | None:intergenic | 30.0% | |
| ATAATCTTTGTAATGACACG+TGG | - | chr6.4:35018340-35018359 | None:intergenic | 30.0% | |
| ATGTTTATTTGACAAAAGGC+TGG | - | chr6.4:35019462-35019481 | None:intergenic | 30.0% | |
| ATTATGAAACGTCTGTTTCA+AGG | + | chr6.4:35018355-35018374 | MS.gene94142:CDS | 30.0% | |
| ATTTGTAGGTATTTGAGAAG+TGG | - | chr6.4:35018019-35018038 | None:intergenic | 30.0% | |
| CAAAATAGAAGATCCTTTGA+TGG | + | chr6.4:35019163-35019182 | MS.gene94142:CDS | 30.0% | |
| CATGCTTATTATTGTTCATC+AGG | + | chr6.4:35019718-35019737 | MS.gene94142:intron | 30.0% | |
| CTATGTGTATTAGAAAGATG+TGG | - | chr6.4:35018069-35018088 | None:intergenic | 30.0% | |
| GAATTAGTTATATCCTTTGG+TGG | + | chr6.4:35019503-35019522 | MS.gene94142:intron | 30.0% | |
| GTGAAAAACTGGAACAAAAT+TGG | + | chr6.4:35019101-35019120 | MS.gene94142:CDS | 30.0% | |
| TAAAATGTCAGCAGAAAACA+TGG | + | chr6.4:35020166-35020185 | MS.gene94142:CDS | 30.0% | |
| TAACATATATACAGCCCTTA+GGG | + | chr6.4:35018702-35018721 | MS.gene94142:intron | 30.0% | |
| TAATCTTTGTAATGACACGT+GGG | - | chr6.4:35018339-35018358 | None:intergenic | 30.0% | |
| TGATCTTATGTTTCTTCACT+TGG | + | chr6.4:35019760-35019779 | MS.gene94142:CDS | 30.0% | |
| TGTAGGATGAATATGAAAGA+CGG | + | chr6.4:35019928-35019947 | MS.gene94142:intron | 30.0% | |
| TTAACATATATACAGCCCTT+AGG | + | chr6.4:35018701-35018720 | MS.gene94142:intron | 30.0% | |
| TTATGAAACGTCTGTTTCAA+GGG | + | chr6.4:35018356-35018375 | MS.gene94142:CDS | 30.0% | |
| TTTGTAGGTATTTGAGAAGT+GGG | - | chr6.4:35018018-35018037 | None:intergenic | 30.0% | |
| ! | AAGACGAACTCTAATTTTGT+AGG | + | chr6.4:35019911-35019930 | MS.gene94142:intron | 30.0% |
| !! | ATGAAAGACGGATTTTTGAA+AGG | + | chr6.4:35019940-35019959 | MS.gene94142:CDS | 30.0% |
| AAAGGACGCATATATGGTTT+AGG | + | chr6.4:35020053-35020072 | MS.gene94142:CDS | 35.0% | |
| AACATATATACAGCCCTTAG+GGG | + | chr6.4:35018703-35018722 | MS.gene94142:intron | 35.0% | |
| AAGGACGCATATATGGTTTA+GGG | + | chr6.4:35020054-35020073 | MS.gene94142:CDS | 35.0% | |
| AATCTTTGTAATGACACGTG+GGG | - | chr6.4:35018338-35018357 | None:intergenic | 35.0% | |
| ACAACATCAGATGGTAAATG+TGG | - | chr6.4:35018096-35018115 | None:intergenic | 35.0% | |
| ACATAAGTTAGAGGAAGAGA+AGG | - | chr6.4:35018461-35018480 | None:intergenic | 35.0% | |
| AGATAGTAAATGGAAGGACA+AGG | + | chr6.4:35019126-35019145 | MS.gene94142:CDS | 35.0% | |
| AGATGAAGTTATCTGACTGA+TGG | - | chr6.4:35020004-35020023 | None:intergenic | 35.0% | |
| ATTCCATACCATCCAAAGTT+GGG | - | chr6.4:35018629-35018648 | None:intergenic | 35.0% | |
| CATCTGAATATGAGCATATG+AGG | + | chr6.4:35020132-35020151 | MS.gene94142:CDS | 35.0% | |
| CTCATATGCTCATATTCAGA+TGG | - | chr6.4:35020134-35020153 | None:intergenic | 35.0% | |
| CTTGTGGTATAATGAGTTTC+AGG | + | chr6.4:35018429-35018448 | MS.gene94142:CDS | 35.0% | |
| GAAAAATGACAAGGATCTTG+CGG | + | chr6.4:35018405-35018424 | MS.gene94142:CDS | 35.0% | |
| GAAAAGACTCCATGAATTTC+TGG | - | chr6.4:35020313-35020332 | None:intergenic | 35.0% | |
| GGACAACTTATACAGAGTTA+AGG | + | chr6.4:35018383-35018402 | MS.gene94142:CDS | 35.0% | |
| GGACGATAAACATAAGTTAG+AGG | - | chr6.4:35018470-35018489 | None:intergenic | 35.0% | |
| GGTACCAAAATACGATGTAT+CGG | + | chr6.4:35019032-35019051 | MS.gene94142:CDS | 35.0% | |
| GTACCAAAATACGATGTATC+GGG | + | chr6.4:35019033-35019052 | MS.gene94142:CDS | 35.0% | |
| GTACGAAAAGGAATAGACAA+AGG | + | chr6.4:35019055-35019074 | MS.gene94142:CDS | 35.0% | |
| GTATTAGAAAGATGTGGACT+TGG | - | chr6.4:35018063-35018082 | None:intergenic | 35.0% | |
| GTCAGATAACTTCATCTTCT+TGG | + | chr6.4:35020007-35020026 | MS.gene94142:CDS | 35.0% | |
| TGTTCAATTGCGTGAAAAAC+TGG | + | chr6.4:35019090-35019109 | MS.gene94142:CDS | 35.0% | |
| TTACCATCTGATGTTGTATC+TGG | + | chr6.4:35018099-35018118 | MS.gene94142:CDS | 35.0% | |
| TTCATCTTCTTGGATGTAGT+TGG | + | chr6.4:35020017-35020036 | MS.gene94142:CDS | 35.0% | |
| TTGGGAAGATAGTAAATGGA+AGG | + | chr6.4:35019120-35019139 | MS.gene94142:CDS | 35.0% | |
| ! | AGTTTTTCACGCAATTGAAC+AGG | - | chr6.4:35019091-35019110 | None:intergenic | 35.0% |
| ! | ATCATCATAAGGCATCTGAT+GGG | + | chr6.4:35019011-35019030 | MS.gene94142:intron | 35.0% |
| ! | GTTTTTCACGCAATTGAACA+GGG | - | chr6.4:35019090-35019109 | None:intergenic | 35.0% |
| ! | TATCATCATAAGGCATCTGA+TGG | + | chr6.4:35019010-35019029 | MS.gene94142:intron | 35.0% |
| ! | TTCATGGAGTCTTTTCAACA+AGG | + | chr6.4:35020317-35020336 | MS.gene94142:CDS | 35.0% |
| !!! | CGCTCAGTCCATTTTTTATT+TGG | + | chr6.4:35018506-35018525 | MS.gene94142:intron | 35.0% |
| !!! | CTTTTAGAATGCTCGATTGT+TGG | - | chr6.4:35019214-35019233 | None:intergenic | 35.0% |
| !!! | TTACATTGCTTGTTTTGCAG+AGG | + | chr6.4:35018942-35018961 | MS.gene94142:intron | 35.0% |
| AAAACATGGAACTCAAGGAG+CGG | + | chr6.4:35020180-35020199 | MS.gene94142:CDS | 40.0% | |
| AACGTCTGTTTCAAGGGAAT+TGG | + | chr6.4:35018362-35018381 | MS.gene94142:CDS | 40.0% | |
| AAGGAATAGACAAAGGCGAA+TGG | + | chr6.4:35019062-35019081 | MS.gene94142:CDS | 40.0% | |
| ACATCAGATGGTAAATGTGG+CGG | - | chr6.4:35018093-35018112 | None:intergenic | 40.0% | |
| ACTAACTATAGCTTCTTCGG+TGG | + | chr6.4:35018745-35018764 | MS.gene94142:intron | 40.0% | |
| AGAGCAGTTCCAGAAATTCA+TGG | + | chr6.4:35020301-35020320 | MS.gene94142:CDS | 40.0% | |
| AGCAGAAAACATGGAACTCA+AGG | + | chr6.4:35020175-35020194 | MS.gene94142:CDS | 40.0% | |
| AGCATGCATCAATTCACATG+AGG | - | chr6.4:35019593-35019612 | None:intergenic | 40.0% | |
| ATCCATATACGCCTATCAGT+AGG | - | chr6.4:35018189-35018208 | None:intergenic | 40.0% | |
| ATCCTACTGATAGGCGTATA+TGG | + | chr6.4:35018184-35018203 | MS.gene94142:CDS | 40.0% | |
| ATCTTCTTGGATGTAGTTGG+AGG | + | chr6.4:35020020-35020039 | MS.gene94142:CDS | 40.0% | |
| ATCTTTGTAATGACACGTGG+GGG | - | chr6.4:35018337-35018356 | None:intergenic | 40.0% | |
| ATGATTCGTATCCGATAGCT+GGG | + | chr6.4:35018154-35018173 | MS.gene94142:CDS | 40.0% | |
| ATTAATTCGTGCATCACAGG+AGG | + | chr6.4:35020220-35020239 | MS.gene94142:CDS | 40.0% | |
| CAACTTTGGATGGTATGGAA+TGG | + | chr6.4:35018628-35018647 | MS.gene94142:intron | 40.0% | |
| CATATATGGTTTAGGGACAG+AGG | + | chr6.4:35020061-35020080 | MS.gene94142:CDS | 40.0% | |
| CATTCCATACCATCCAAAGT+TGG | - | chr6.4:35018630-35018649 | None:intergenic | 40.0% | |
| CTCCAAATCTCAAATGGTTG+CGG | + | chr6.4:35019407-35019426 | MS.gene94142:intron | 40.0% | |
| GACAAGAAAGGACGCATATA+TGG | + | chr6.4:35020047-35020066 | MS.gene94142:CDS | 40.0% | |
| GATAAGGAGGTAGATGTGAA+TGG | - | chr6.4:35020343-35020362 | None:intergenic | 40.0% | |
| GGAATTAATTCGTGCATCAC+AGG | + | chr6.4:35020217-35020236 | MS.gene94142:CDS | 40.0% | |
| GGCACTAACTATAGCTTCTT+CGG | + | chr6.4:35018742-35018761 | MS.gene94142:intron | 40.0% | |
| GGTATCCTCCAAATCTCAAA+TGG | + | chr6.4:35019401-35019420 | MS.gene94142:intron | 40.0% | |
| TCAAACATGACTAAGCTGCT+GGG | + | chr6.4:35019332-35019351 | MS.gene94142:intron | 40.0% | |
| TCAGATGATCTGGATGAAGA+AGG | - | chr6.4:35020101-35020120 | None:intergenic | 40.0% | |
| TCTTACGTTAATTGTGGTCC+CGG | - | chr6.4:35018216-35018235 | None:intergenic | 40.0% | |
| TCTTCATCCAGATCATCTGA+CGG | + | chr6.4:35020101-35020120 | MS.gene94142:CDS | 40.0% | |
| TGGGGAGATTGGATATTTGT+AGG | - | chr6.4:35018033-35018052 | None:intergenic | 40.0% | |
| TGGTGGAAAGTCAAGGTAAT+TGG | + | chr6.4:35019537-35019556 | MS.gene94142:intron | 40.0% | |
| ! | AACCGCAACCATTTGAGATT+TGG | - | chr6.4:35019412-35019431 | None:intergenic | 40.0% |
| ! | GTACCCGATACATCGTATTT+TGG | - | chr6.4:35019039-35019058 | None:intergenic | 40.0% |
| !! | GTTATATCCTTTGGTGGACT+TGG | + | chr6.4:35019509-35019528 | MS.gene94142:intron | 40.0% |
| AAGGAACTCACAGCAAACAG+AGG | + | chr6.4:35019959-35019978 | MS.gene94142:CDS | 45.0% | |
| ACGATGTATCGGGTACGAAA+AGG | + | chr6.4:35019043-35019062 | MS.gene94142:CDS | 45.0% | |
| AGGAACTCACAGCAAACAGA+GGG | + | chr6.4:35019960-35019979 | MS.gene94142:CDS | 45.0% | |
| AGGGAGCCAAAAATGATGGT+AGG | - | chr6.4:35018606-35018625 | None:intergenic | 45.0% | |
| AGTGTGCAATGGACCATCAA+AGG | - | chr6.4:35019179-35019198 | None:intergenic | 45.0% | |
| ATGGTCCATTGCACACTTGT+GGG | + | chr6.4:35019182-35019201 | MS.gene94142:CDS | 45.0% | |
| ATGTGGACTTGGAGTAGAGT+GGG | - | chr6.4:35018052-35018071 | None:intergenic | 45.0% | |
| ATTGACCCACAAGTGTGCAA+TGG | - | chr6.4:35019190-35019209 | None:intergenic | 45.0% | |
| CATACCATCCAAAGTTGGGA+GGG | - | chr6.4:35018625-35018644 | None:intergenic | 45.0% | |
| CATCAGATGGTAAATGTGGC+GGG | - | chr6.4:35018092-35018111 | None:intergenic | 45.0% | |
| CCACCAGATACAACATCAGA+TGG | - | chr6.4:35018105-35018124 | None:intergenic | 45.0% | |
| CCATCTGATGTTGTATCTGG+TGG | + | chr6.4:35018102-35018121 | MS.gene94142:CDS | 45.0% | |
| CCGAAAACAACATCCCCTAA+GGG | - | chr6.4:35018719-35018738 | None:intergenic | 45.0% | |
| CTCAAACATGACTAAGCTGC+TGG | + | chr6.4:35019331-35019350 | MS.gene94142:intron | 45.0% | |
| GAAAGGCGATCCATCAAAGT+GGG | + | chr6.4:35019380-35019399 | MS.gene94142:intron | 45.0% | |
| GAGCGACAAATCTAACAACG+AGG | - | chr6.4:35018491-35018510 | None:intergenic | 45.0% | |
| GATAAACCGGACATCAAACC+AGG | - | chr6.4:35018913-35018932 | None:intergenic | 45.0% | |
| GATGATTCGTATCCGATAGC+TGG | + | chr6.4:35018153-35018172 | MS.gene94142:CDS | 45.0% | |
| GGAGTACAGATCCTACTGAT+AGG | + | chr6.4:35018175-35018194 | MS.gene94142:CDS | 45.0% | |
| TCCGAAAACAACATCCCCTA+AGG | - | chr6.4:35018720-35018739 | None:intergenic | 45.0% | |
| TCTATGTCTTGCTCATGCTC+AGG | - | chr6.4:35018983-35019002 | None:intergenic | 45.0% | |
| TGAAAGGCGATCCATCAAAG+TGG | + | chr6.4:35019379-35019398 | MS.gene94142:intron | 45.0% | |
| TTGGAGGATACCCACTTTGA+TGG | - | chr6.4:35019393-35019412 | None:intergenic | 45.0% | |
| ! | AAAGCTCCTGGTTTGATGTC+CGG | + | chr6.4:35018904-35018923 | MS.gene94142:intron | 45.0% |
| ! | CGCAACCATTTGAGATTTGG+AGG | - | chr6.4:35019409-35019428 | None:intergenic | 45.0% |
| ! | CGTGATGATGATGATGCATG+TGG | - | chr6.4:35018132-35018151 | None:intergenic | 45.0% |
| ! | GCACTGCCTACCATCATTTT+TGG | + | chr6.4:35018597-35018616 | MS.gene94142:intron | 45.0% |
| !!! | AGGGGATGTTGTTTTCGGAT+TGG | + | chr6.4:35018721-35018740 | MS.gene94142:intron | 45.0% |
| !!! | CCCTTAGGGGATGTTGTTTT+CGG | + | chr6.4:35018716-35018735 | MS.gene94142:intron | 45.0% |
| AACATGACTAAGCTGCTGGG+AGG | + | chr6.4:35019335-35019354 | MS.gene94142:intron | 50.0% | |
| AAGTTCCAGAGCAAAGCTCC+TGG | + | chr6.4:35018892-35018911 | MS.gene94142:intron | 50.0% | |
| AATGATGGTAGGCAGTGCAG+TGG | - | chr6.4:35018595-35018614 | None:intergenic | 50.0% | |
| ACAAGGATCTTGCGGACTTG+TGG | + | chr6.4:35018413-35018432 | MS.gene94142:CDS | 50.0% | |
| ACGTTAATTGTGGTCCCGGA+CGG | - | chr6.4:35018212-35018231 | None:intergenic | 50.0% | |
| CAAGAGGATTCGCGATTGCT+CGG | + | chr6.4:35020278-35020297 | MS.gene94142:CDS | 50.0% | |
| CAGCAAACCAAGTCCACCAA+AGG | - | chr6.4:35019519-35019538 | None:intergenic | 50.0% | |
| CCATACCATCCAAAGTTGGG+AGG | - | chr6.4:35018626-35018645 | None:intergenic | 50.0% | |
| CCTCCCAACTTTGGATGGTA+TGG | + | chr6.4:35018623-35018642 | MS.gene94142:intron | 50.0% | |
| CTCGAACGATGAGGTCGATA+AGG | - | chr6.4:35020359-35020378 | None:intergenic | 50.0% | |
| GAACGATGAGGTCGATAAGG+AGG | - | chr6.4:35020356-35020375 | None:intergenic | 50.0% | |
| GAACTCACAGCAAACAGAGG+GGG | + | chr6.4:35019962-35019981 | MS.gene94142:CDS | 50.0% | |
| GATGGTCCATTGCACACTTG+TGG | + | chr6.4:35019181-35019200 | MS.gene94142:CDS | 50.0% | |
| GATGTGGACTTGGAGTAGAG+TGG | - | chr6.4:35018053-35018072 | None:intergenic | 50.0% | |
| GCAGTCACAACAGTCACAAG+AGG | + | chr6.4:35020262-35020281 | MS.gene94142:CDS | 50.0% | |
| GGAACTCACAGCAAACAGAG+GGG | + | chr6.4:35019961-35019980 | MS.gene94142:CDS | 50.0% | |
| GGAGCGGTTGAAGACTAATG+AGG | + | chr6.4:35020196-35020215 | MS.gene94142:CDS | 50.0% | |
| GGATCTGTACTCCCAGCTAT+CGG | - | chr6.4:35018168-35018187 | None:intergenic | 50.0% | |
| GTTGGAGGAGTCGACAAGAA+AGG | + | chr6.4:35020035-35020054 | MS.gene94142:CDS | 50.0% | |
| TAGGCGTATATGGATCCGTC+CGG | + | chr6.4:35018194-35018213 | MS.gene94142:CDS | 50.0% | |
| TCAAACCAGGAGCTTTGCTC+TGG | - | chr6.4:35018900-35018919 | None:intergenic | 50.0% | |
| TGAGATGCCGTCAGATGATC+TGG | - | chr6.4:35020111-35020130 | None:intergenic | 50.0% | |
| TGGGAGGGAGCCAAAAATGA+TGG | - | chr6.4:35018610-35018629 | None:intergenic | 50.0% | |
| TGTGGACTTGGAGTAGAGTG+GGG | - | chr6.4:35018051-35018070 | None:intergenic | 50.0% | |
| TTGGAGTAGAGTGGGGAGAT+TGG | - | chr6.4:35018044-35018063 | None:intergenic | 50.0% | |
| !! | CTTTGGTGGACTTGGTTTGC+TGG | + | chr6.4:35019517-35019536 | MS.gene94142:intron | 50.0% |
| !! | GGTTTGCTGGTGGAAAGTCA+AGG | + | chr6.4:35019530-35019549 | MS.gene94142:intron | 50.0% |
| !!! | TTTTGGCTCCCTCCCAACTT+TGG | + | chr6.4:35018614-35018633 | MS.gene94142:intron | 50.0% |
| AGGCGTATATGGATCCGTCC+GGG | + | chr6.4:35018195-35018214 | MS.gene94142:CDS | 55.0% | |
| !! | TGGTGGACTTGGTTTGCTGG+TGG | + | chr6.4:35019520-35019539 | MS.gene94142:intron | 55.0% |
| GGCTCCCTCCCAACTTTGGA+TGG | + | chr6.4:35018618-35018637 | MS.gene94142:intron | 60.0% | |
| ACACGTGGGGGCTGAACAGC+AGG | - | chr6.4:35018325-35018344 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 35017997 | 35020382 | 35017997 | ID=MS.gene94142 |
| chr6.4 | mRNA | 35017997 | 35020382 | 35017997 | ID=MS.gene94142.t1;Parent=MS.gene94142 |
| chr6.4 | exon | 35017997 | 35018229 | 35017997 | ID=MS.gene94142.t1.exon1;Parent=MS.gene94142.t1 |
| chr6.4 | CDS | 35017997 | 35018229 | 35017997 | ID=cds.MS.gene94142.t1;Parent=MS.gene94142.t1 |
| chr6.4 | exon | 35018315 | 35018450 | 35018315 | ID=MS.gene94142.t1.exon2;Parent=MS.gene94142.t1 |
| chr6.4 | CDS | 35018315 | 35018450 | 35018315 | ID=cds.MS.gene94142.t1;Parent=MS.gene94142.t1 |
| chr6.4 | exon | 35019022 | 35019237 | 35019022 | ID=MS.gene94142.t1.exon3;Parent=MS.gene94142.t1 |
| chr6.4 | CDS | 35019022 | 35019237 | 35019022 | ID=cds.MS.gene94142.t1;Parent=MS.gene94142.t1 |
| chr6.4 | exon | 35019740 | 35019802 | 35019740 | ID=MS.gene94142.t1.exon4;Parent=MS.gene94142.t1 |
| chr6.4 | CDS | 35019740 | 35019802 | 35019740 | ID=cds.MS.gene94142.t1;Parent=MS.gene94142.t1 |
| chr6.4 | exon | 35019933 | 35020382 | 35019933 | ID=MS.gene94142.t1.exon5;Parent=MS.gene94142.t1 |
| chr6.4 | CDS | 35019933 | 35020382 | 35019933 | ID=cds.MS.gene94142.t1;Parent=MS.gene94142.t1 |
| Gene Sequence |
| Protein sequence |
