Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94187.t1 | XP_024639058.1 | 98.8 | 561 | 7 | 0 | 1 | 561 | 1 | 561 | 0.00E+00 | 1130.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94187.t1 | G7K7B5 | 98.8 | 561 | 7 | 0 | 1 | 561 | 1 | 561 | 0.0e+00 | 1130.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060429 | MS.gene94187 | -0.806994 | 6.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94187.t1 | MTR_5g083740 | 98.752 | 561 | 7 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1160 |
| MS.gene94187.t1 | MTR_3g072040 | 63.009 | 565 | 142 | 6 | 1 | 561 | 1 | 502 | 0.0 | 653 |
| MS.gene94187.t1 | MTR_3g072070 | 66.460 | 483 | 134 | 5 | 1 | 479 | 1 | 459 | 0.0 | 631 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94187.t1 | AT3G10980 | 59.298 | 570 | 206 | 10 | 5 | 560 | 6 | 563 | 0.0 | 630 |
| MS.gene94187.t1 | AT5G05350 | 56.742 | 534 | 200 | 7 | 30 | 560 | 20 | 525 | 0.0 | 595 |
Find 117 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTAGCAGTTTCTTTA+TGG | 0.127897 | 5.4:-66292028 | MS.gene94187:CDS |
| ATCTTATGCGTTGCTGTTTC+AGG | 0.172175 | 5.4:-66293191 | MS.gene94187:CDS |
| CGCATAAGATCCACGCAAAA+AGG | 0.191675 | 5.4:+66293204 | None:intergenic |
| CTAAGTTTGGCGATATCTTT+TGG | 0.228804 | 5.4:+66292993 | None:intergenic |
| CTAGGTAAAGATTATGATTC+TGG | 0.262677 | 5.4:-66292750 | MS.gene94187:CDS |
| GCATTCCTTGCCGACTTCTT+TGG | 0.266606 | 5.4:+66293122 | None:intergenic |
| TTTCGGCAAGCCTGCGGTTT+CGG | 0.267613 | 5.4:-66292280 | MS.gene94187:CDS |
| TTGAAGAAGTTGATCCTATT+AGG | 0.274814 | 5.4:+66293413 | None:intergenic |
| AATTATACCTCTTTCTCATT+TGG | 0.282202 | 5.4:+66292322 | None:intergenic |
| AGTGGCAAGACGCTTGAATT+TGG | 0.310045 | 5.4:+66293373 | None:intergenic |
| GCAGTACTCCTTTCTAAGTT+TGG | 0.322615 | 5.4:+66292980 | None:intergenic |
| TACTTTGGCTATTCTGTTGT+TGG | 0.329375 | 5.4:-66292251 | MS.gene94187:CDS |
| TTGTGCATTTGGTTGGAATA+TGG | 0.330037 | 5.4:-66292529 | MS.gene94187:CDS |
| CCTACTTATGACTTCTGTTT+CGG | 0.336304 | 5.4:-66292297 | MS.gene94187:CDS |
| GTGGAGGAATACTTGACATT+TGG | 0.338866 | 5.4:-66292593 | MS.gene94187:CDS |
| TCGAGAACTTGAAATATCTA+TGG | 0.347292 | 5.4:+66293496 | None:intergenic |
| AGGAGAACTTGTCCCAGATT+TGG | 0.348843 | 5.4:+66292098 | None:intergenic |
| GGTGTGTCATCAACCAAATC+TGG | 0.354088 | 5.4:-66292111 | MS.gene94187:CDS |
| ATTGAGGAATGTAACAATAA+TGG | 0.360036 | 5.4:-66293542 | MS.gene94187:CDS |
| CATTGAGTGCTATTCCTAAT+AGG | 0.364914 | 5.4:-66293427 | MS.gene94187:CDS |
| ACTTCATAACATAATGGTTT+CGG | 0.365084 | 5.4:-66293588 | None:intergenic |
| ATGGTTTCGGTTGATAATAA+TGG | 0.365993 | 5.4:-66293575 | MS.gene94187:CDS |
| ATCGGTGCACCTGCAATTGC+TGG | 0.371089 | 5.4:-66292795 | MS.gene94187:CDS |
| CACTTTGTGGTCTAAACTTA+GGG | 0.372572 | 5.4:-66292872 | MS.gene94187:CDS |
| GCACTTTGTGGTCTAAACTT+AGG | 0.372663 | 5.4:-66292873 | MS.gene94187:CDS |
| AGGATCAACTTCTTCAAAAT+CGG | 0.383821 | 5.4:-66293407 | MS.gene94187:CDS |
| AAGAAACTGCTAGAACTTAG+AGG | 0.389392 | 5.4:+66292033 | None:intergenic |
| TTTGCTCAATATGCACTTTG+TGG | 0.392887 | 5.4:-66292885 | MS.gene94187:CDS |
| AGATGACAATAGAATGGATT+AGG | 0.399686 | 5.4:-66293244 | MS.gene94187:CDS |
| CTTTGTATCACCGGCGGAGT+TGG | 0.401446 | 5.4:+66291925 | None:intergenic |
| TGGAGGAATACTTGACATTT+GGG | 0.407333 | 5.4:-66292592 | MS.gene94187:CDS |
| CTTGACGGTTTGAAAGTAGA+AGG | 0.422675 | 5.4:+66292057 | None:intergenic |
| TTTATCATCTACAATATGAT+AGG | 0.429440 | 5.4:+66292194 | None:intergenic |
| GAGCGCCCGGCCATCGGTGT+TGG | 0.439028 | 5.4:-66292837 | MS.gene94187:CDS |
| GCCAAGATGAAAATCCAAAA+GGG | 0.440423 | 5.4:+66292444 | None:intergenic |
| ATATTGAGGATGACACTGTT+AGG | 0.445757 | 5.4:-66292413 | MS.gene94187:CDS |
| CTTGCTCAAGAAATGCGAAC+GGG | 0.448066 | 5.4:-66292222 | MS.gene94187:CDS |
| GTATATAGACCAGCAATTGC+AGG | 0.456063 | 5.4:+66292786 | None:intergenic |
| AGGCAATGTCTAGTAGGTGC+TGG | 0.460261 | 5.4:-66292393 | MS.gene94187:CDS |
| ACAAGATGGTAGAATAACTT+TGG | 0.464879 | 5.4:+66293035 | None:intergenic |
| AGAAAGGAGTACTGCAAGAA+TGG | 0.467535 | 5.4:-66292972 | MS.gene94187:CDS |
| AATATGGAGAGACTTGGCTT+TGG | 0.469184 | 5.4:-66292513 | MS.gene94187:CDS |
| CTTGGCTGCTGTTAATATTG+AGG | 0.476409 | 5.4:-66292427 | MS.gene94187:CDS |
| CTAGAACTTAGAGGACTTGA+CGG | 0.477113 | 5.4:+66292042 | None:intergenic |
| ATCCTGTTCCTTGTCATGAC+TGG | 0.479597 | 5.4:-66293164 | MS.gene94187:CDS |
| TGTATCACCGGCGGAGTTGG+TGG | 0.481477 | 5.4:+66291928 | None:intergenic |
| AATCTTTACCTAGAGGACTA+AGG | 0.482009 | 5.4:+66292760 | None:intergenic |
| TCGCGACGCAGAGGTGAAAT+CGG | 0.484106 | 5.4:+66292135 | None:intergenic |
| TCATGAATGGAAACACATAA+TGG | 0.490549 | 5.4:-66292937 | MS.gene94187:CDS |
| TACCAGTCATGACAAGGAAC+AGG | 0.492780 | 5.4:+66293162 | None:intergenic |
| GAACTTATAAGCCTCATGAA+TGG | 0.495861 | 5.4:-66292950 | MS.gene94187:CDS |
| CATATTCCAACACCGATGGC+CGG | 0.496400 | 5.4:+66292831 | None:intergenic |
| TGAAGAAGATGACAATAGAA+TGG | 0.501131 | 5.4:-66293250 | MS.gene94187:CDS |
| CGGTTTCGGACTGCATACTT+TGG | 0.503833 | 5.4:-66292266 | MS.gene94187:CDS |
| AGATATCGCCAAACTTAGAA+AGG | 0.504835 | 5.4:-66292988 | MS.gene94187:CDS |
| ACGGAAGATAGTGGACCATC+TGG | 0.504935 | 5.4:+66291994 | None:intergenic |
| GGAGATTCTCTTTGTATCAC+CGG | 0.509159 | 5.4:+66291916 | None:intergenic |
| GGAGGATCCAAATGAGAAAG+AGG | 0.509367 | 5.4:-66292329 | MS.gene94187:CDS |
| AGTATTCCTCCACTCCACTT+TGG | 0.512153 | 5.4:+66292603 | None:intergenic |
| ATATTCCAACACCGATGGCC+GGG | 0.512263 | 5.4:+66292832 | None:intergenic |
| AGCCAAGATGAAAATCCAAA+AGG | 0.513987 | 5.4:+66292443 | None:intergenic |
| TATACAATCCTTAGTCCTCT+AGG | 0.515282 | 5.4:-66292768 | MS.gene94187:CDS |
| TCTGGGACAAGTTCTCCTCT+TGG | 0.516682 | 5.4:-66292093 | MS.gene94187:CDS |
| GGAATAGCACTCAATGTGCT+CGG | 0.531235 | 5.4:+66293434 | None:intergenic |
| GGTTGGAATATGGAGAGACT+TGG | 0.540609 | 5.4:-66292519 | MS.gene94187:CDS |
| ATCTTGTACTTCTGTGCCGA+TGG | 0.543050 | 5.4:-66293019 | MS.gene94187:CDS |
| CAAGCGTCTTGCCACTCAGA+TGG | 0.543275 | 5.4:-66293366 | MS.gene94187:CDS |
| TTATGCGTTGCTGTTTCAGG+TGG | 0.547321 | 5.4:-66293188 | MS.gene94187:CDS |
| GGCAATGTCTAGTAGGTGCT+GGG | 0.548348 | 5.4:-66292392 | MS.gene94187:CDS |
| ATAATGGTAGTGGTAATTCT+CGG | 0.552969 | 5.4:-66292921 | MS.gene94187:CDS |
| TAATGGTAAAGATGAAATTG+AGG | 0.553613 | 5.4:-66293558 | MS.gene94187:CDS |
| ATTATGTGTTTCCATTCATG+AGG | 0.556074 | 5.4:+66292939 | None:intergenic |
| GAATAGCACTCAATGTGCTC+GGG | 0.557900 | 5.4:+66293435 | None:intergenic |
| CCGAAACAGAAGTCATAAGT+AGG | 0.558846 | 5.4:+66292297 | None:intergenic |
| TTCAAGTTCTCGAAGAGCAA+TGG | 0.559290 | 5.4:-66293486 | MS.gene94187:CDS |
| AAGGCACAGATTGTGAAGCC+TGG | 0.561142 | 5.4:+66293342 | None:intergenic |
| AGATCTGAGCGCCCGGCCAT+CGG | 0.567721 | 5.4:-66292843 | MS.gene94187:CDS |
| ATGGAAACACATAATGGTAG+TGG | 0.568927 | 5.4:-66292931 | MS.gene94187:CDS |
| AGAAGTCGGCAAGGAATGCA+TGG | 0.573813 | 5.4:-66293118 | MS.gene94187:CDS |
| CTTCTGTTTCGGCAAGCCTG+CGG | 0.574737 | 5.4:-66292286 | MS.gene94187:CDS |
| GTGTGTCATCAACCAAATCT+GGG | 0.575863 | 5.4:-66292110 | MS.gene94187:CDS |
| ATTTCACCTCTGCGTCGCGA+AGG | 0.576158 | 5.4:-66292132 | MS.gene94187:CDS |
| AAGCTATGTGAACTCGGAGA+AGG | 0.576858 | 5.4:+66293323 | None:intergenic |
| TTCTGTGATTCCAAAGAAGT+CGG | 0.578176 | 5.4:-66293132 | MS.gene94187:CDS |
| TCTCTTAAGCTATGTGAACT+CGG | 0.578236 | 5.4:+66293317 | None:intergenic |
| ATGGAATATCATAGTCCAGA+TGG | 0.578861 | 5.4:-66292009 | MS.gene94187:CDS |
| GTATAAAAGATCTGAGCGCC+CGG | 0.584269 | 5.4:-66292850 | MS.gene94187:CDS |
| TGGATCGGACGAAGAATCAC+AGG | 0.586235 | 5.4:-66292730 | MS.gene94187:CDS |
| ACTGTTAGGCAATGTCTAGT+AGG | 0.586758 | 5.4:-66292399 | MS.gene94187:CDS |
| CATACAGAAAAGCATAAAAG+TGG | 0.591275 | 5.4:+66292470 | None:intergenic |
| TTGCTCAAGAAATGCGAACG+GGG | 0.591460 | 5.4:-66292221 | MS.gene94187:CDS |
| TCTTGCCACTCAGATGGACC+AGG | 0.594178 | 5.4:-66293360 | MS.gene94187:CDS |
| GCAGAGGTGAAATCGGCGGT+TGG | 0.594442 | 5.4:+66292142 | None:intergenic |
| AATGATTCCACCAACTCCGC+CGG | 0.599929 | 5.4:-66291935 | MS.gene94187:CDS |
| GTGCTCGGGAACTTTCTACC+AGG | 0.603559 | 5.4:+66293449 | None:intergenic |
| TCTTGCTCAAGAAATGCGAA+CGG | 0.603658 | 5.4:-66292223 | MS.gene94187:CDS |
| TAAAGATTATGATTCTGGAT+CGG | 0.607721 | 5.4:-66292745 | MS.gene94187:CDS |
| CCAAGATGAAAATCCAAAAG+GGG | 0.608853 | 5.4:+66292445 | None:intergenic |
| TGCTCAAGAAATGCGAACGG+GGG | 0.610733 | 5.4:-66292220 | MS.gene94187:CDS |
| GATTAGGAACCCGATGAACA+TGG | 0.611445 | 5.4:-66293228 | MS.gene94187:CDS |
| TGAGACTGAAATCATTTGAG+AGG | 0.616878 | 5.4:-66292674 | MS.gene94187:CDS |
| CAGTCGAAAATAGACCAAAG+TGG | 0.632679 | 5.4:-66292617 | MS.gene94187:CDS |
| AATAGACCAAAGTGGAGTGG+AGG | 0.635594 | 5.4:-66292609 | MS.gene94187:CDS |
| ATGGTGACAGATGAAAATCC+TGG | 0.643050 | 5.4:-66293467 | MS.gene94187:CDS |
| ATCGGCACAGAAGTACAAGA+TGG | 0.645219 | 5.4:+66293021 | None:intergenic |
| GACACACCTTCGCGACGCAG+AGG | 0.651096 | 5.4:+66292126 | None:intergenic |
| TGATTCCAAAGAAGTCGGCA+AGG | 0.653679 | 5.4:-66293127 | MS.gene94187:CDS |
| TCAACATACCAGTCATGACA+AGG | 0.654796 | 5.4:+66293156 | None:intergenic |
| GATTCTCTTTGTATCACCGG+CGG | 0.656253 | 5.4:+66291919 | None:intergenic |
| GAAAATAGACCAAAGTGGAG+TGG | 0.658100 | 5.4:-66292612 | MS.gene94187:CDS |
| TATACATATTCCAACACCGA+TGG | 0.667440 | 5.4:+66292827 | None:intergenic |
| GGAGACGAGTTGACACCAAG+AGG | 0.669536 | 5.4:+66292078 | None:intergenic |
| AGTATGCAGTCCGAAACCGC+AGG | 0.671860 | 5.4:+66292270 | None:intergenic |
| GAATCATAATCTTTACCTAG+AGG | 0.677371 | 5.4:+66292753 | None:intergenic |
| CAAGATGAAAATCCAAAAGG+GGG | 0.678756 | 5.4:+66292446 | None:intergenic |
| CGACGCAGAGGTGAAATCGG+CGG | 0.690132 | 5.4:+66292138 | None:intergenic |
| TGAAGCCTGGTCCATCTGAG+TGG | 0.740360 | 5.4:+66293355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCATCTACAATATGAT+AGG | + | chr5.4:66293296-66293315 | None:intergenic | 20.0% |
| ! | AATTATACCTCTTTCTCATT+TGG | + | chr5.4:66293168-66293187 | None:intergenic | 25.0% |
| ! | ATTGAGGAATGTAACAATAA+TGG | - | chr5.4:66291945-66291964 | MS.gene94187:CDS | 25.0% |
| ! | TAAAGATTATGATTCTGGAT+CGG | - | chr5.4:66292742-66292761 | MS.gene94187:CDS | 25.0% |
| ! | TAATGGTAAAGATGAAATTG+AGG | - | chr5.4:66291929-66291948 | MS.gene94187:CDS | 25.0% |
| !! | ATATGTATAACTTTTGCGAT+CGG | - | chr5.4:66292674-66292693 | MS.gene94187:CDS | 25.0% |
| ACAAGATGGTAGAATAACTT+TGG | + | chr5.4:66292455-66292474 | None:intergenic | 30.0% | |
| AGGATCAACTTCTTCAAAAT+CGG | - | chr5.4:66292080-66292099 | MS.gene94187:CDS | 30.0% | |
| ATTATGTGTTTCCATTCATG+AGG | + | chr5.4:66292551-66292570 | None:intergenic | 30.0% | |
| CTAGGTAAAGATTATGATTC+TGG | - | chr5.4:66292737-66292756 | MS.gene94187:CDS | 30.0% | |
| GAATCATAATCTTTACCTAG+AGG | + | chr5.4:66292737-66292756 | None:intergenic | 30.0% | |
| TCATGAATGGAAACACATAA+TGG | - | chr5.4:66292550-66292569 | MS.gene94187:CDS | 30.0% | |
| TCGAGAACTTGAAATATCTA+TGG | + | chr5.4:66291994-66292013 | None:intergenic | 30.0% | |
| TGAAGAAGATGACAATAGAA+TGG | - | chr5.4:66292237-66292256 | MS.gene94187:CDS | 30.0% | |
| ! | AAGTTCTAGCAGTTTCTTTA+TGG | - | chr5.4:66293459-66293478 | MS.gene94187:CDS | 30.0% |
| ! | AGATGACAATAGAATGGATT+AGG | - | chr5.4:66292243-66292262 | MS.gene94187:CDS | 30.0% |
| ! | CACTTTTATGCTTTTCTGTA+TGG | - | chr5.4:66293018-66293037 | MS.gene94187:CDS | 30.0% |
| ! | CATACAGAAAAGCATAAAAG+TGG | + | chr5.4:66293020-66293039 | None:intergenic | 30.0% |
| ! | TTCAGAAAGCTCTTCTTTTA+CGG | + | chr5.4:66293515-66293534 | None:intergenic | 30.0% |
| ! | TTGAAGAAGTTGATCCTATT+AGG | + | chr5.4:66292077-66292096 | None:intergenic | 30.0% |
| !! | ATAATGGTAGTGGTAATTCT+CGG | - | chr5.4:66292566-66292585 | MS.gene94187:CDS | 30.0% |
| !! | ATGGTTTCGGTTGATAATAA+TGG | - | chr5.4:66291912-66291931 | MS.gene94187:CDS | 30.0% |
| !! | TTCTGTACTTTTTGTGCATT+TGG | - | chr5.4:66292947-66292966 | MS.gene94187:CDS | 30.0% |
| !!! | GGGATTGTTCTATGTTTTTT+CGG | - | chr5.4:66293115-66293134 | MS.gene94187:CDS | 30.0% |
| AAGAAACTGCTAGAACTTAG+AGG | + | chr5.4:66293457-66293476 | None:intergenic | 35.0% | |
| AATCTTTACCTAGAGGACTA+AGG | + | chr5.4:66292730-66292749 | None:intergenic | 35.0% | |
| AGATATCGCCAAACTTAGAA+AGG | - | chr5.4:66292499-66292518 | MS.gene94187:CDS | 35.0% | |
| AGCCAAGATGAAAATCCAAA+AGG | + | chr5.4:66293047-66293066 | None:intergenic | 35.0% | |
| ATATTGAGGATGACACTGTT+AGG | - | chr5.4:66293074-66293093 | MS.gene94187:CDS | 35.0% | |
| ATGGAAACACATAATGGTAG+TGG | - | chr5.4:66292556-66292575 | MS.gene94187:CDS | 35.0% | |
| ATGGAATATCATAGTCCAGA+TGG | - | chr5.4:66293478-66293497 | MS.gene94187:CDS | 35.0% | |
| CAAGATGAAAATCCAAAAGG+GGG | + | chr5.4:66293044-66293063 | None:intergenic | 35.0% | |
| CACTTTGTGGTCTAAACTTA+GGG | - | chr5.4:66292615-66292634 | MS.gene94187:CDS | 35.0% | |
| CCAAGATGAAAATCCAAAAG+GGG | + | chr5.4:66293045-66293064 | None:intergenic | 35.0% | |
| CCTACTTATGACTTCTGTTT+CGG | - | chr5.4:66293190-66293209 | MS.gene94187:CDS | 35.0% | |
| GAACTTATAAGCCTCATGAA+TGG | - | chr5.4:66292537-66292556 | MS.gene94187:CDS | 35.0% | |
| GCCAAGATGAAAATCCAAAA+GGG | + | chr5.4:66293046-66293065 | None:intergenic | 35.0% | |
| TACTTTGGCTATTCTGTTGT+TGG | - | chr5.4:66293236-66293255 | MS.gene94187:CDS | 35.0% | |
| TATACAATCCTTAGTCCTCT+AGG | - | chr5.4:66292719-66292738 | MS.gene94187:CDS | 35.0% | |
| TATACATATTCCAACACCGA+TGG | + | chr5.4:66292663-66292682 | None:intergenic | 35.0% | |
| TCTCTTAAGCTATGTGAACT+CGG | + | chr5.4:66292173-66292192 | None:intergenic | 35.0% | |
| TGAGACTGAAATCATTTGAG+AGG | - | chr5.4:66292813-66292832 | MS.gene94187:CDS | 35.0% | |
| TGGAGGAATACTTGACATTT+GGG | - | chr5.4:66292895-66292914 | MS.gene94187:CDS | 35.0% | |
| TTCTGTGATTCCAAAGAAGT+CGG | - | chr5.4:66292355-66292374 | MS.gene94187:CDS | 35.0% | |
| TTGTGCATTTGGTTGGAATA+TGG | - | chr5.4:66292958-66292977 | MS.gene94187:CDS | 35.0% | |
| TTTGCTCAATATGCACTTTG+TGG | - | chr5.4:66292602-66292621 | MS.gene94187:CDS | 35.0% | |
| ! | CATTGAGTGCTATTCCTAAT+AGG | - | chr5.4:66292060-66292079 | MS.gene94187:CDS | 35.0% |
| ! | CGATATCTTTTGGATTCCAT+CGG | + | chr5.4:66292487-66292506 | None:intergenic | 35.0% |
| ! | CTAAGTTTGGCGATATCTTT+TGG | + | chr5.4:66292497-66292516 | None:intergenic | 35.0% |
| ! | GTTTTCAAAGAAACTCGACT+GGG | - | chr5.4:66292208-66292227 | MS.gene94187:CDS | 35.0% |
| ! | TCTTCTTTTACGGAAGATAG+TGG | + | chr5.4:66293505-66293524 | None:intergenic | 35.0% |
| ! | TGTTTTCAAAGAAACTCGAC+TGG | - | chr5.4:66292207-66292226 | MS.gene94187:CDS | 35.0% |
| !! | GTACTTTTTGTGCATTTGGT+TGG | - | chr5.4:66292951-66292970 | MS.gene94187:CDS | 35.0% |
| !!! | TGTTTTTTCGGTATGCTCTA+TGG | - | chr5.4:66293127-66293146 | MS.gene94187:CDS | 35.0% |
| AATATGGAGAGACTTGGCTT+TGG | - | chr5.4:66292974-66292993 | MS.gene94187:CDS | 40.0% | |
| ACTGTTAGGCAATGTCTAGT+AGG | - | chr5.4:66293088-66293107 | MS.gene94187:CDS | 40.0% | |
| ATGGTGACAGATGAAAATCC+TGG | - | chr5.4:66292020-66292039 | MS.gene94187:CDS | 40.0% | |
| CAGTCGAAAATAGACCAAAG+TGG | - | chr5.4:66292870-66292889 | MS.gene94187:CDS | 40.0% | |
| CCGAAACAGAAGTCATAAGT+AGG | + | chr5.4:66293193-66293212 | None:intergenic | 40.0% | |
| CTAGAACTTAGAGGACTTGA+CGG | + | chr5.4:66293448-66293467 | None:intergenic | 40.0% | |
| CTTGACGGTTTGAAAGTAGA+AGG | + | chr5.4:66293433-66293452 | None:intergenic | 40.0% | |
| CTTGGCTGCTGTTAATATTG+AGG | - | chr5.4:66293060-66293079 | MS.gene94187:CDS | 40.0% | |
| GAAAATAGACCAAAGTGGAG+TGG | - | chr5.4:66292875-66292894 | MS.gene94187:CDS | 40.0% | |
| GCACTTTGTGGTCTAAACTT+AGG | - | chr5.4:66292614-66292633 | MS.gene94187:CDS | 40.0% | |
| GCAGTACTCCTTTCTAAGTT+TGG | + | chr5.4:66292510-66292529 | None:intergenic | 40.0% | |
| GCATAAGATCCACGCAAAAA+GGG | + | chr5.4:66292285-66292304 | None:intergenic | 40.0% | |
| GGAGATTCTCTTTGTATCAC+CGG | + | chr5.4:66293574-66293593 | None:intergenic | 40.0% | |
| GTATATAGACCAGCAATTGC+AGG | + | chr5.4:66292704-66292723 | None:intergenic | 40.0% | |
| GTGGAGGAATACTTGACATT+TGG | - | chr5.4:66292894-66292913 | MS.gene94187:CDS | 40.0% | |
| GTGTGTCATCAACCAAATCT+GGG | - | chr5.4:66293377-66293396 | MS.gene94187:CDS | 40.0% | |
| TCAACATACCAGTCATGACA+AGG | + | chr5.4:66292334-66292353 | None:intergenic | 40.0% | |
| TCTTGCTCAAGAAATGCGAA+CGG | - | chr5.4:66293264-66293283 | MS.gene94187:CDS | 40.0% | |
| ! | CCCCTTTTGGATTTTCATCT+TGG | - | chr5.4:66293042-66293061 | MS.gene94187:CDS | 40.0% |
| ! | GTATGCTCTATGGTGGTTTT+TGG | - | chr5.4:66293137-66293156 | MS.gene94187:CDS | 40.0% |
| ! | TTCAAGTTCTCGAAGAGCAA+TGG | - | chr5.4:66292001-66292020 | MS.gene94187:CDS | 40.0% |
| !! | AGAAAGGAGTACTGCAAGAA+TGG | - | chr5.4:66292515-66292534 | MS.gene94187:CDS | 40.0% |
| !! | ATCTTATGCGTTGCTGTTTC+AGG | - | chr5.4:66292296-66292315 | MS.gene94187:CDS | 40.0% |
| !! | TTTTTCGGTATGCTCTATGG+TGG | - | chr5.4:66293130-66293149 | MS.gene94187:CDS | 40.0% |
| AAGCTATGTGAACTCGGAGA+AGG | + | chr5.4:66292167-66292186 | None:intergenic | 45.0% | |
| AATAGACCAAAGTGGAGTGG+AGG | - | chr5.4:66292878-66292897 | MS.gene94187:CDS | 45.0% | |
| AGGAGAACTTGTCCCAGATT+TGG | + | chr5.4:66293392-66293411 | None:intergenic | 45.0% | |
| AGTATTCCTCCACTCCACTT+TGG | + | chr5.4:66292887-66292906 | None:intergenic | 45.0% | |
| AGTGGCAAGACGCTTGAATT+TGG | + | chr5.4:66292117-66292136 | None:intergenic | 45.0% | |
| ATCCTGTTCCTTGTCATGAC+TGG | - | chr5.4:66292323-66292342 | MS.gene94187:CDS | 45.0% | |
| ATCTTGTACTTCTGTGCCGA+TGG | - | chr5.4:66292468-66292487 | MS.gene94187:CDS | 45.0% | |
| CAAAAAGGGCCATGTTCATC+GGG | + | chr5.4:66292271-66292290 | None:intergenic | 45.0% | |
| CGCATAAGATCCACGCAAAA+AGG | + | chr5.4:66292286-66292305 | None:intergenic | 45.0% | |
| CTTGCTCAAGAAATGCGAAC+GGG | - | chr5.4:66293265-66293284 | MS.gene94187:CDS | 45.0% | |
| GAATAGCACTCAATGTGCTC+GGG | + | chr5.4:66292055-66292074 | None:intergenic | 45.0% | |
| GATTAGGAACCCGATGAACA+TGG | - | chr5.4:66292259-66292278 | MS.gene94187:CDS | 45.0% | |
| GATTCTCTTTGTATCACCGG+CGG | + | chr5.4:66293571-66293590 | None:intergenic | 45.0% | |
| GCAAAAAGGGCCATGTTCAT+CGG | + | chr5.4:66292272-66292291 | None:intergenic | 45.0% | |
| GGAATAGCACTCAATGTGCT+CGG | + | chr5.4:66292056-66292075 | None:intergenic | 45.0% | |
| GGAGGATCCAAATGAGAAAG+AGG | - | chr5.4:66293158-66293177 | MS.gene94187:CDS | 45.0% | |
| GGTGTGTCATCAACCAAATC+TGG | - | chr5.4:66293376-66293395 | MS.gene94187:CDS | 45.0% | |
| GGTTGGAATATGGAGAGACT+TGG | - | chr5.4:66292968-66292987 | MS.gene94187:CDS | 45.0% | |
| GTATAAAAGATCTGAGCGCC+CGG | - | chr5.4:66292637-66292656 | MS.gene94187:CDS | 45.0% | |
| TACCAGTCATGACAAGGAAC+AGG | + | chr5.4:66292328-66292347 | None:intergenic | 45.0% | |
| TGATTCCAAAGAAGTCGGCA+AGG | - | chr5.4:66292360-66292379 | MS.gene94187:CDS | 45.0% | |
| TTGCTCAAGAAATGCGAACG+GGG | - | chr5.4:66293266-66293285 | MS.gene94187:CDS | 45.0% | |
| ! | ATCGGCACAGAAGTACAAGA+TGG | + | chr5.4:66292469-66292488 | None:intergenic | 45.0% |
| ! | TTTTCTGTATGGCCCCCTTT+TGG | - | chr5.4:66293029-66293048 | MS.gene94187:CDS | 45.0% |
| !! | TGCTCTATGGTGGTTTTTGG+AGG | - | chr5.4:66293140-66293159 | MS.gene94187:CDS | 45.0% |
| !! | TTATGCGTTGCTGTTTCAGG+TGG | - | chr5.4:66292299-66292318 | MS.gene94187:CDS | 45.0% |
| AAGGCACAGATTGTGAAGCC+TGG | + | chr5.4:66292148-66292167 | None:intergenic | 50.0% | |
| AATGATTCCACCAACTCCGC+CGG | - | chr5.4:66293552-66293571 | MS.gene94187:CDS | 50.0% | |
| AGAAGTCGGCAAGGAATGCA+TGG | - | chr5.4:66292369-66292388 | MS.gene94187:CDS | 50.0% | |
| AGGCAATGTCTAGTAGGTGC+TGG | - | chr5.4:66293094-66293113 | MS.gene94187:CDS | 50.0% | |
| ATATTCCAACACCGATGGCC+GGG | + | chr5.4:66292658-66292677 | None:intergenic | 50.0% | |
| CATATTCCAACACCGATGGC+CGG | + | chr5.4:66292659-66292678 | None:intergenic | 50.0% | |
| CGGTTTCGGACTGCATACTT+TGG | - | chr5.4:66293221-66293240 | MS.gene94187:CDS | 50.0% | |
| GGCAATGTCTAGTAGGTGCT+GGG | - | chr5.4:66293095-66293114 | MS.gene94187:CDS | 50.0% | |
| TGCTCAAGAAATGCGAACGG+GGG | - | chr5.4:66293267-66293286 | MS.gene94187:CDS | 50.0% | |
| TGGATCGGACGAAGAATCAC+AGG | - | chr5.4:66292757-66292776 | MS.gene94187:CDS | 50.0% | |
| ! | TCTGGGACAAGTTCTCCTCT+TGG | - | chr5.4:66293394-66293413 | MS.gene94187:CDS | 50.0% |
| ! | TGAACATGGCCCTTTTTGCG+TGG | - | chr5.4:66292273-66292292 | MS.gene94187:CDS | 50.0% |
| !! | ACGGAAGATAGTGGACCATC+TGG | + | chr5.4:66293496-66293515 | None:intergenic | 50.0% |
| !! | GCATTCCTTGCCGACTTCTT+TGG | + | chr5.4:66292368-66292387 | None:intergenic | 50.0% |
| AGTATGCAGTCCGAAACCGC+AGG | + | chr5.4:66293220-66293239 | None:intergenic | 55.0% | |
| ATCGGTGCACCTGCAATTGC+TGG | - | chr5.4:66292692-66292711 | MS.gene94187:CDS | 55.0% | |
| ATTTCACCTCTGCGTCGCGA+AGG | - | chr5.4:66293355-66293374 | MS.gene94187:CDS | 55.0% | |
| CAAGCGTCTTGCCACTCAGA+TGG | - | chr5.4:66292121-66292140 | MS.gene94187:CDS | 55.0% | |
| CTTCTGTTTCGGCAAGCCTG+CGG | - | chr5.4:66293201-66293220 | MS.gene94187:CDS | 55.0% | |
| CTTTGTATCACCGGCGGAGT+TGG | + | chr5.4:66293565-66293584 | None:intergenic | 55.0% | |
| GTGCTCGGGAACTTTCTACC+AGG | + | chr5.4:66292041-66292060 | None:intergenic | 55.0% | |
| TCGCGACGCAGAGGTGAAAT+CGG | + | chr5.4:66293355-66293374 | None:intergenic | 55.0% | |
| TCTTGCCACTCAGATGGACC+AGG | - | chr5.4:66292127-66292146 | MS.gene94187:CDS | 55.0% | |
| TGAAGCCTGGTCCATCTGAG+TGG | + | chr5.4:66292135-66292154 | None:intergenic | 55.0% | |
| TTTCGGCAAGCCTGCGGTTT+CGG | - | chr5.4:66293207-66293226 | MS.gene94187:CDS | 55.0% | |
| ! | GGAGACGAGTTGACACCAAG+AGG | + | chr5.4:66293412-66293431 | None:intergenic | 55.0% |
| CGACGCAGAGGTGAAATCGG+CGG | + | chr5.4:66293352-66293371 | None:intergenic | 60.0% | |
| GCAGAGGTGAAATCGGCGGT+TGG | + | chr5.4:66293348-66293367 | None:intergenic | 60.0% | |
| TGTATCACCGGCGGAGTTGG+TGG | + | chr5.4:66293562-66293581 | None:intergenic | 60.0% | |
| AGATCTGAGCGCCCGGCCAT+CGG | - | chr5.4:66292644-66292663 | MS.gene94187:CDS | 65.0% | |
| GACACACCTTCGCGACGCAG+AGG | + | chr5.4:66293364-66293383 | None:intergenic | 65.0% | |
| GAGCGCCCGGCCATCGGTGT+TGG | - | chr5.4:66292650-66292669 | MS.gene94187:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66291912 | 66293597 | 66291912 | ID=MS.gene94187 |
| chr5.4 | mRNA | 66291912 | 66293597 | 66291912 | ID=MS.gene94187.t1;Parent=MS.gene94187 |
| chr5.4 | exon | 66291912 | 66293597 | 66291912 | ID=MS.gene94187.t1.exon1;Parent=MS.gene94187.t1 |
| chr5.4 | CDS | 66291912 | 66293597 | 66291912 | ID=cds.MS.gene94187.t1;Parent=MS.gene94187.t1 |
| Gene Sequence |
| Protein sequence |
