Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94189.t1 | XP_003616736.1 | 96.6 | 327 | 9 | 2 | 1 | 326 | 1 | 326 | 2.00E-179 | 638.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94189.t1 | F4IH31 | 67.4 | 331 | 101 | 2 | 1 | 325 | 1 | 330 | 3.4e-127 | 456.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94189.t1 | G7K7B4 | 96.6 | 327 | 9 | 2 | 1 | 326 | 1 | 326 | 1.4e-179 | 638.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051279 | MS.gene94189 | 0.809258 | 2.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94189.t1 | MTR_5g083730 | 96.636 | 327 | 9 | 2 | 1 | 326 | 1 | 326 | 0.0 | 647 |
| MS.gene94189.t1 | MTR_5g083720 | 92.638 | 326 | 24 | 0 | 1 | 326 | 1 | 326 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94189.t1 | AT2G40410 | 67.372 | 331 | 101 | 2 | 1 | 325 | 1 | 330 | 5.96e-166 | 465 |
| MS.gene94189.t1 | AT3G56170 | 64.308 | 325 | 111 | 2 | 1 | 325 | 1 | 320 | 3.94e-152 | 430 |
| MS.gene94189.t1 | AT2G40410 | 63.717 | 226 | 75 | 2 | 1 | 220 | 1 | 225 | 2.04e-100 | 295 |
Find 68 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGAGAGTCCTTATTTA+TGG | 0.141511 | 5.4:+66280645 | MS.gene94189:CDS |
| GAGCGAAGCGAGTTGGATTA+TGG | 0.267595 | 5.4:+66281017 | MS.gene94189:CDS |
| TAGGGATTGTTGACTTTCTA+TGG | 0.278264 | 5.4:+66279321 | MS.gene94189:intron |
| GCACTTACGGTTTCTAGTTC+TGG | 0.284790 | 5.4:-66280868 | None:intergenic |
| ACTGATCTTCTCCATAAATA+AGG | 0.312433 | 5.4:-66280656 | None:intergenic |
| TCTCCAATCCCATGGCTTCT+CGG | 0.327793 | 5.4:-66281053 | None:intergenic |
| CTCCAATCCCATGGCTTCTC+GGG | 0.340831 | 5.4:-66281052 | None:intergenic |
| ACATGTTGTGTCTTCCAAAA+AGG | 0.345101 | 5.4:+66278908 | MS.gene94189:CDS |
| AGATTATTGACGCGGGATAT+CGG | 0.347574 | 5.4:+66280304 | MS.gene94189:CDS |
| GGATGATTCTATTTGAAAAC+GGG | 0.359742 | 5.4:+66280413 | MS.gene94189:intron |
| AGATTTCCCTTGAACAATCT+TGG | 0.366156 | 5.4:-66280625 | None:intergenic |
| TTCATAGTTCCTTCTAGAAC+GGG | 0.384606 | 5.4:-66280259 | None:intergenic |
| AGCGAAGCGAGTTGGATTAT+GGG | 0.389091 | 5.4:+66281018 | MS.gene94189:CDS |
| ACATGTCTGCTTAGTCCTTC+AGG | 0.390784 | 5.4:-66278891 | None:intergenic |
| GGTTGAACAGCTACTTCAAC+TGG | 0.393087 | 5.4:-66279363 | None:intergenic |
| ACAAGACTAGCTGCTTCTTC+AGG | 0.393967 | 5.4:-66279134 | None:intergenic |
| AGGATGATTCTATTTGAAAA+CGG | 0.422857 | 5.4:+66280412 | MS.gene94189:intron |
| GCAGCAATGTGCACGTTGCT+AGG | 0.425364 | 5.4:-66280219 | None:intergenic |
| CTGTCCTTTCTCCAATCCCA+TGG | 0.425752 | 5.4:-66281061 | None:intergenic |
| GAGCAGAAGCCCGTTCTAGA+AGG | 0.433716 | 5.4:+66280250 | MS.gene94189:CDS |
| GATCAGTATCAACGTTTAGT+AGG | 0.434441 | 5.4:+66280672 | MS.gene94189:CDS |
| GCTGCTTCTTCAGGTGTCCT+AGG | 0.450209 | 5.4:-66279125 | None:intergenic |
| CTTGTTATTCTGACATTGAA+AGG | 0.465085 | 5.4:+66279152 | MS.gene94189:CDS |
| GGGACCCTTGATGATTCTCT+AGG | 0.465785 | 5.4:-66280198 | None:intergenic |
| ATCCCGAGAAGCCATGGGAT+TGG | 0.470020 | 5.4:+66281050 | MS.gene94189:CDS |
| TAAGGAATTGATGCTAAAGA+AGG | 0.478599 | 5.4:+66280810 | MS.gene94189:intron |
| AAAAGTATCGGATCCGACTA+AGG | 0.479370 | 5.4:+66280449 | MS.gene94189:CDS |
| AGGTATAGAAAGTTAATAGA+TGG | 0.486642 | 5.4:+66279080 | MS.gene94189:intron |
| GAAGCCAGAGCGAAGCGAGT+TGG | 0.488533 | 5.4:+66281010 | MS.gene94189:CDS |
| GAACTGACCAAGATTGTTCA+AGG | 0.488734 | 5.4:+66280618 | MS.gene94189:CDS |
| CTTCATAGTTCCTTCTAGAA+CGG | 0.497762 | 5.4:-66280260 | None:intergenic |
| TAATCCAACTCGCTTCGCTC+TGG | 0.500251 | 5.4:-66281014 | None:intergenic |
| TCTTCAGGTGTCCTAGGTGG+TGG | 0.505446 | 5.4:-66279119 | None:intergenic |
| TAGTTCTGGTCGTTTGTCGT+AGG | 0.512281 | 5.4:-66280854 | None:intergenic |
| GTTTGCAGCAATTGGCATAG+AGG | 0.516813 | 5.4:-66278644 | None:intergenic |
| GTTAATAGATGGTTGGAAAG+AGG | 0.525689 | 5.4:+66279091 | MS.gene94189:CDS |
| GAAGCCATGGGATTGGAGAA+AGG | 0.535032 | 5.4:+66281057 | MS.gene94189:CDS |
| CAGACCCTAGAGAATCATCA+AGG | 0.543731 | 5.4:+66280193 | MS.gene94189:CDS |
| CCAGAAAACGCAATGCCATA+CGG | 0.544278 | 5.4:+66280579 | MS.gene94189:CDS |
| CAGCAATGTGCACGTTGCTA+GGG | 0.546446 | 5.4:-66280218 | None:intergenic |
| AAGGAATTGATGCTAAAGAA+GGG | 0.547387 | 5.4:+66280811 | MS.gene94189:intron |
| ATAGAAAGTTAATAGATGGT+TGG | 0.548270 | 5.4:+66279084 | MS.gene94189:CDS |
| GGACCCTTGATGATTCTCTA+GGG | 0.549557 | 5.4:-66280197 | None:intergenic |
| TAACTTTGAAAACACCTCCC+AGG | 0.556186 | 5.4:+66278731 | MS.gene94189:CDS |
| TGTTTGATGAGTACCTTAGT+CGG | 0.557577 | 5.4:-66280462 | None:intergenic |
| TAATTTGAATCTTACTGGCA+AGG | 0.557594 | 5.4:-66279430 | None:intergenic |
| ATTTCATATTGTACTCCTTG+AGG | 0.564927 | 5.4:-66279402 | None:intergenic |
| ACTCCTTGAGGTAAAGATGT+AGG | 0.571865 | 5.4:-66279390 | None:intergenic |
| GAAACACTAACGGTGGATTG+TGG | 0.598408 | 5.4:-66278687 | None:intergenic |
| TGAGGTAAAGATGTAGGAGG+AGG | 0.604055 | 5.4:-66279384 | None:intergenic |
| CACAAACAGATTATTGACGC+GGG | 0.618904 | 5.4:+66280297 | MS.gene94189:CDS |
| CCTCCTACATCTTTACCTCA+AGG | 0.623673 | 5.4:+66279387 | MS.gene94189:CDS |
| GATGCAAAAGCTGTGGCAGA+TGG | 0.633642 | 5.4:+66280141 | MS.gene94189:CDS |
| CCTTGAGGTAAAGATGTAGG+AGG | 0.635074 | 5.4:-66279387 | None:intergenic |
| GCTTCTTCAGGTGTCCTAGG+TGG | 0.638052 | 5.4:-66279122 | None:intergenic |
| AAAGCTGTGGCAGATGGTGA+TGG | 0.640689 | 5.4:+66280147 | MS.gene94189:CDS |
| AACTGACCAAGATTGTTCAA+GGG | 0.653454 | 5.4:+66280619 | MS.gene94189:CDS |
| GCACAAACAGATTATTGACG+CGG | 0.655001 | 5.4:+66280296 | MS.gene94189:CDS |
| AGCAAGTGCTGAAACACTAA+CGG | 0.658395 | 5.4:-66278697 | None:intergenic |
| AAGAGGCAAGACCACCACCT+AGG | 0.662088 | 5.4:+66279108 | MS.gene94189:CDS |
| TGCTAAAGAAGGGTTTAGCG+TGG | 0.663966 | 5.4:+66280821 | MS.gene94189:CDS |
| GATGATTCTATTTGAAAACG+GGG | 0.671612 | 5.4:+66280414 | MS.gene94189:CDS |
| TTCTAGAAGGAACTATGAAG+AGG | 0.673353 | 5.4:+66280263 | MS.gene94189:CDS |
| TCAACTGGAGTATGTGACAG+TGG | 0.679694 | 5.4:-66279348 | None:intergenic |
| AGACCCTAGAGAATCATCAA+GGG | 0.682966 | 5.4:+66280194 | MS.gene94189:CDS |
| CTAGGTTGATGCAAAAGCTG+TGG | 0.704223 | 5.4:+66280134 | MS.gene94189:intron |
| AACAAAATAGGTTACCTGGG+AGG | 0.716149 | 5.4:-66278745 | None:intergenic |
| AAGTGCTGAAACACTAACGG+TGG | 0.743011 | 5.4:-66278694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAATATAGAATAAAAAC+AGG | + | chr5.4:66280544-66280563 | MS.gene94189:intron | 15.0% |
| !! | TGAAATATAGAATAAAAACA+GGG | + | chr5.4:66280545-66280564 | MS.gene94189:intron | 15.0% |
| !!! | TTATATTGTTTTGAATATGA+AGG | + | chr5.4:66279060-66279079 | MS.gene94189:intron | 15.0% |
| !!! | TTTAATTTCAGATACTAAAA+CGG | + | chr5.4:66279822-66279841 | MS.gene94189:intron | 15.0% |
| !! | AACTTCAATTCTACTTAATT+TGG | + | chr5.4:66279214-66279233 | MS.gene94189:intron | 20.0% |
| !! | AATTAAGTAGAATTGAAGTT+TGG | - | chr5.4:66279214-66279233 | None:intergenic | 20.0% |
| !! | ATCATCAATTCATCATAAAA+GGG | - | chr5.4:66280071-66280090 | None:intergenic | 20.0% |
| !! | ATGCTTATAATTTAACAAGA+GGG | - | chr5.4:66279853-66279872 | None:intergenic | 20.0% |
| !! | GAAATATAGAATAAAAACAG+GGG | + | chr5.4:66280546-66280565 | MS.gene94189:intron | 20.0% |
| !! | TATGCTTATAATTTAACAAG+AGG | - | chr5.4:66279854-66279873 | None:intergenic | 20.0% |
| !!! | ATGTTTTTGAGTAACAAAAT+AGG | - | chr5.4:66278760-66278779 | None:intergenic | 20.0% |
| !!! | GTTGATTTCTTTTTATGATA+AGG | + | chr5.4:66280792-66280811 | MS.gene94189:intron | 20.0% |
| !!! | GTTTTAGTATCTGAAATTAA+AGG | - | chr5.4:66279823-66279842 | None:intergenic | 20.0% |
| !!! | GTTTTGTTGTTTGATTTATA+GGG | + | chr5.4:66279303-66279322 | MS.gene94189:intron | 20.0% |
| !!! | TCTGAAATTAAAGGATAATT+TGG | - | chr5.4:66279814-66279833 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTGTTTGATTTAT+AGG | + | chr5.4:66279302-66279321 | MS.gene94189:intron | 20.0% |
| ! | ACAGTGCATATAAATTAATC+TGG | - | chr5.4:66279015-66279034 | None:intergenic | 25.0% |
| ! | AGGATGATTCTATTTGAAAA+CGG | + | chr5.4:66280412-66280431 | MS.gene94189:intron | 25.0% |
| ! | AGGTATAGAAAGTTAATAGA+TGG | + | chr5.4:66279080-66279099 | MS.gene94189:intron | 25.0% |
| ! | ATAGAAAGTTAATAGATGGT+TGG | + | chr5.4:66279084-66279103 | MS.gene94189:CDS | 25.0% |
| ! | ATGTGTATGAAAATGCATTT+GGG | + | chr5.4:66280896-66280915 | MS.gene94189:intron | 25.0% |
| ! | CATCATCAATTCATCATAAA+AGG | - | chr5.4:66280072-66280091 | None:intergenic | 25.0% |
| ! | GATAGTAATTTGAATCTTAC+TGG | - | chr5.4:66279438-66279457 | None:intergenic | 25.0% |
| ! | TATATGCACATGTTACAAAA+TGG | - | chr5.4:66278841-66278860 | None:intergenic | 25.0% |
| ! | TGTAAGAACATAAGAAAGTT+AGG | - | chr5.4:66280977-66280996 | None:intergenic | 25.0% |
| !! | AAATCCTAGCTAAAAAGTAT+CGG | + | chr5.4:66280437-66280456 | MS.gene94189:CDS | 25.0% |
| !! | AATTGTGTATTTGGTTTAAC+GGG | + | chr5.4:66280934-66280953 | MS.gene94189:intron | 25.0% |
| !! | GAATTGTGTATTTGGTTTAA+CGG | + | chr5.4:66280933-66280952 | MS.gene94189:intron | 25.0% |
| !! | TGGTAAAAAGAGTAGAATTT+TGG | - | chr5.4:66278812-66278831 | None:intergenic | 25.0% |
| !! | TTGTAATAACGTTTTTGTAC+AGG | + | chr5.4:66280704-66280723 | MS.gene94189:CDS | 25.0% |
| !!! | ATTATGATGAATTGATGATG+AGG | + | chr5.4:66279873-66279892 | MS.gene94189:intron | 25.0% |
| !!! | TTATGATGAATTGATGATGA+GGG | + | chr5.4:66279874-66279893 | MS.gene94189:intron | 25.0% |
| AAACGCATGAATTGTGTATT+TGG | + | chr5.4:66280925-66280944 | MS.gene94189:intron | 30.0% | |
| AAGGAATTGATGCTAAAGAA+GGG | + | chr5.4:66280811-66280830 | MS.gene94189:intron | 30.0% | |
| ACTGATCTTCTCCATAAATA+AGG | - | chr5.4:66280659-66280678 | None:intergenic | 30.0% | |
| AGTAACAAAATAGGTTACCT+GGG | - | chr5.4:66278751-66278770 | None:intergenic | 30.0% | |
| ATAAACGAGTTTGTGATCAA+TGG | + | chr5.4:66279754-66279773 | MS.gene94189:intron | 30.0% | |
| ATACACATCATTAGCACTTA+CGG | - | chr5.4:66280884-66280903 | None:intergenic | 30.0% | |
| ATTTCATATTGTACTCCTTG+AGG | - | chr5.4:66279405-66279424 | None:intergenic | 30.0% | |
| CCATAAAAAAGAAGATGTTG+AGG | + | chr5.4:66279175-66279194 | MS.gene94189:CDS | 30.0% | |
| CCTAATCAAGAAAAGAACAT+TGG | - | chr5.4:66280395-66280414 | None:intergenic | 30.0% | |
| GATGATTCTATTTGAAAACG+GGG | + | chr5.4:66280414-66280433 | MS.gene94189:CDS | 30.0% | |
| GATGTGTATGAAAATGCATT+TGG | + | chr5.4:66280895-66280914 | MS.gene94189:intron | 30.0% | |
| GGATGATTCTATTTGAAAAC+GGG | + | chr5.4:66280413-66280432 | MS.gene94189:intron | 30.0% | |
| TAAGGAATTGATGCTAAAGA+AGG | + | chr5.4:66280810-66280829 | MS.gene94189:intron | 30.0% | |
| TAATTTGAATCTTACTGGCA+AGG | - | chr5.4:66279433-66279452 | None:intergenic | 30.0% | |
| TCTTATGTTCTTACACTAGT+GGG | + | chr5.4:66280982-66281001 | MS.gene94189:intron | 30.0% | |
| TGTGTATGAAAATGCATTTG+GGG | + | chr5.4:66280897-66280916 | MS.gene94189:intron | 30.0% | |
| TTCTTATGTTCTTACACTAG+TGG | + | chr5.4:66280981-66281000 | MS.gene94189:intron | 30.0% | |
| TTGTCTTGTCTGTTCAAATT+CGG | - | chr5.4:66279503-66279522 | None:intergenic | 30.0% | |
| ! | ATTGTGTATTTGGTTTAACG+GGG | + | chr5.4:66280935-66280954 | MS.gene94189:intron | 30.0% |
| ! | CCAATGTTCTTTTCTTGATT+AGG | + | chr5.4:66280392-66280411 | MS.gene94189:intron | 30.0% |
| ! | TCTTTGAGAGTCCTTATTTA+TGG | + | chr5.4:66280645-66280664 | MS.gene94189:CDS | 30.0% |
| !! | ATGAATTGATGATGAACATG+TGG | + | chr5.4:66280078-66280097 | MS.gene94189:intron | 30.0% |
| !! | CTTGTTATTCTGACATTGAA+AGG | + | chr5.4:66279152-66279171 | MS.gene94189:CDS | 30.0% |
| !! | GTAGAATTTTGGTAAGTTTG+AGG | - | chr5.4:66278801-66278820 | None:intergenic | 30.0% |
| !! | TATGATGAATTGATGATGAG+GGG | + | chr5.4:66279875-66279894 | MS.gene94189:intron | 30.0% |
| !!! | AATCTTTTTTAGGTTCCTGA+AGG | + | chr5.4:66278876-66278895 | MS.gene94189:intron | 30.0% |
| !!! | CCTCAACATCTTCTTTTTTA+TGG | - | chr5.4:66279178-66279197 | None:intergenic | 30.0% |
| !!! | TGATTCATCGATTTTGCAAT+TGG | + | chr5.4:66280110-66280129 | MS.gene94189:intron | 30.0% |
| !!! | TGCAGTTTTAGAGACTAAAT+AGG | - | chr5.4:66279618-66279637 | None:intergenic | 30.0% |
| AACTGACCAAGATTGTTCAA+GGG | + | chr5.4:66280619-66280638 | MS.gene94189:CDS | 35.0% | |
| ACATGTTGTGTCTTCCAAAA+AGG | + | chr5.4:66278908-66278927 | MS.gene94189:CDS | 35.0% | |
| AGATTTCCCTTGAACAATCT+TGG | - | chr5.4:66280628-66280647 | None:intergenic | 35.0% | |
| ATGCACATGTTACAAAATGG+TGG | - | chr5.4:66278838-66278857 | None:intergenic | 35.0% | |
| GAACAGACAAGACAACTATT+CGG | + | chr5.4:66279508-66279527 | MS.gene94189:intron | 35.0% | |
| GAGTAACAAAATAGGTTACC+TGG | - | chr5.4:66278752-66278771 | None:intergenic | 35.0% | |
| GATCAGTATCAACGTTTAGT+AGG | + | chr5.4:66280672-66280691 | MS.gene94189:CDS | 35.0% | |
| GTTAATAGATGGTTGGAAAG+AGG | + | chr5.4:66279091-66279110 | MS.gene94189:CDS | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr5.4:66279916-66279935 | MS.gene94189:intron | 35.0% | |
| TGCACATGTTACAAAATGGT+GGG | - | chr5.4:66278837-66278856 | None:intergenic | 35.0% | |
| TGTTTGATGAGTACCTTAGT+CGG | - | chr5.4:66280465-66280484 | None:intergenic | 35.0% | |
| TTAACGGGGAAAAACATGAT+AGG | + | chr5.4:66280949-66280968 | MS.gene94189:intron | 35.0% | |
| ! | CTTCATAGTTCCTTCTAGAA+CGG | - | chr5.4:66280263-66280282 | None:intergenic | 35.0% |
| ! | GGATGATCATCAGATGTTTT+TGG | - | chr5.4:66278669-66278688 | None:intergenic | 35.0% |
| ! | TGTCTAGCATTGCTGTTAAA+TGG | + | chr5.4:66279463-66279482 | MS.gene94189:intron | 35.0% |
| ! | TTCTAGAAGGAACTATGAAG+AGG | + | chr5.4:66280263-66280282 | MS.gene94189:CDS | 35.0% |
| !! | ATCGATTTTGCAATTGGACT+AGG | + | chr5.4:66280116-66280135 | MS.gene94189:intron | 35.0% |
| !! | TAGGGATTGTTGACTTTCTA+TGG | + | chr5.4:66279321-66279340 | MS.gene94189:intron | 35.0% |
| !! | TTCATAGTTCCTTCTAGAAC+GGG | - | chr5.4:66280262-66280281 | None:intergenic | 35.0% |
| !!! | GTTTTAGCTTCTTTTCCGTA+TGG | - | chr5.4:66280597-66280616 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGCAGCAAT+TGG | - | chr5.4:66278655-66278674 | None:intergenic | 35.0% |
| AAAAAATCCCGAGAAGCCAT+GGG | + | chr5.4:66281045-66281064 | MS.gene94189:CDS | 40.0% | |
| AACAAAATAGGTTACCTGGG+AGG | - | chr5.4:66278748-66278767 | None:intergenic | 40.0% | |
| ACTCCTTGAGGTAAAGATGT+AGG | - | chr5.4:66279393-66279412 | None:intergenic | 40.0% | |
| AGACCCTAGAGAATCATCAA+GGG | + | chr5.4:66280194-66280213 | MS.gene94189:CDS | 40.0% | |
| AGATTATTGACGCGGGATAT+CGG | + | chr5.4:66280304-66280323 | MS.gene94189:CDS | 40.0% | |
| AGCCTCTTGTGTAAAAAGCA+GGG | + | chr5.4:66279966-66279985 | MS.gene94189:intron | 40.0% | |
| CACAAACAGATTATTGACGC+GGG | + | chr5.4:66280297-66280316 | MS.gene94189:CDS | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr5.4:66279997-66280016 | MS.gene94189:intron | 40.0% | |
| CTTGTGTAAAAAGCAGGGTA+AGG | + | chr5.4:66279971-66279990 | MS.gene94189:intron | 40.0% | |
| GAACTGACCAAGATTGTTCA+AGG | + | chr5.4:66280618-66280637 | MS.gene94189:CDS | 40.0% | |
| GCACAAACAGATTATTGACG+CGG | + | chr5.4:66280296-66280315 | MS.gene94189:CDS | 40.0% | |
| GCACATGTTACAAAATGGTG+GGG | - | chr5.4:66278836-66278855 | None:intergenic | 40.0% | |
| TTCATCATAAAAGGGCAACC+CGG | - | chr5.4:66280063-66280082 | None:intergenic | 40.0% | |
| ! | ATGTTACAAAATGGTGGGGT+TGG | - | chr5.4:66278832-66278851 | None:intergenic | 40.0% |
| ! | TAACTTTGAAAACACCTCCC+AGG | + | chr5.4:66278731-66278750 | MS.gene94189:CDS | 40.0% |
| !! | AAAAGTATCGGATCCGACTA+AGG | + | chr5.4:66280449-66280468 | MS.gene94189:CDS | 40.0% |
| !! | AGCAAGTGCTGAAACACTAA+CGG | - | chr5.4:66278700-66278719 | None:intergenic | 40.0% |
| !!! | GGATCCGATACTTTTTAGCT+AGG | - | chr5.4:66280444-66280463 | None:intergenic | 40.0% |
| !!! | TACCCTGCTTTTTACACAAG+AGG | - | chr5.4:66279971-66279990 | None:intergenic | 40.0% |
| ACATGTCTGCTTAGTCCTTC+AGG | - | chr5.4:66278894-66278913 | None:intergenic | 45.0% | |
| CAAAAAATCCCGAGAAGCCA+TGG | + | chr5.4:66281044-66281063 | MS.gene94189:CDS | 45.0% | |
| CAGACCCTAGAGAATCATCA+AGG | + | chr5.4:66280193-66280212 | MS.gene94189:CDS | 45.0% | |
| CAGCCTCTTGTGTAAAAAGC+AGG | + | chr5.4:66279965-66279984 | MS.gene94189:intron | 45.0% | |
| CCAAAAAGGCTCAAGCTAAG+TGG | + | chr5.4:66278922-66278941 | MS.gene94189:CDS | 45.0% | |
| CCAGAAAACGCAATGCCATA+CGG | + | chr5.4:66280579-66280598 | MS.gene94189:CDS | 45.0% | |
| CCTCCTACATCTTTACCTCA+AGG | + | chr5.4:66279387-66279406 | MS.gene94189:CDS | 45.0% | |
| CCTTGAGGTAAAGATGTAGG+AGG | - | chr5.4:66279390-66279409 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr5.4:66279996-66280015 | MS.gene94189:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr5.4:66279993-66280012 | MS.gene94189:intron | 45.0% | |
| GGTTGAACAGCTACTTCAAC+TGG | - | chr5.4:66279366-66279385 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | + | chr5.4:66279920-66279939 | MS.gene94189:intron | 45.0% | |
| GTTTGCAGCAATTGGCATAG+AGG | - | chr5.4:66278647-66278666 | None:intergenic | 45.0% | |
| TCAACTGGAGTATGTGACAG+TGG | - | chr5.4:66279351-66279370 | None:intergenic | 45.0% | |
| TGAGGTAAAGATGTAGGAGG+AGG | - | chr5.4:66279387-66279406 | None:intergenic | 45.0% | |
| TGCTAAAGAAGGGTTTAGCG+TGG | + | chr5.4:66280821-66280840 | MS.gene94189:CDS | 45.0% | |
| ! | ACAAGACTAGCTGCTTCTTC+AGG | - | chr5.4:66279137-66279156 | None:intergenic | 45.0% |
| ! | AGCGAAGCGAGTTGGATTAT+GGG | + | chr5.4:66281018-66281037 | MS.gene94189:CDS | 45.0% |
| ! | GGACCCTTGATGATTCTCTA+GGG | - | chr5.4:66280200-66280219 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr5.4:66279960-66279979 | None:intergenic | 45.0% |
| !! | AAGTGCTGAAACACTAACGG+TGG | - | chr5.4:66278697-66278716 | None:intergenic | 45.0% |
| !! | CCACTTAGCTTGAGCCTTTT+TGG | - | chr5.4:66278925-66278944 | None:intergenic | 45.0% |
| !! | CTAGGTTGATGCAAAAGCTG+TGG | + | chr5.4:66280134-66280153 | MS.gene94189:intron | 45.0% |
| !! | GAAACACTAACGGTGGATTG+TGG | - | chr5.4:66278690-66278709 | None:intergenic | 45.0% |
| !! | GCACTTACGGTTTCTAGTTC+TGG | - | chr5.4:66280871-66280890 | None:intergenic | 45.0% |
| !! | TAGTTCTGGTCGTTTGTCGT+AGG | - | chr5.4:66280857-66280876 | None:intergenic | 45.0% |
| !! | TTGATGATGAGGGGTAACCT+TGG | + | chr5.4:66279884-66279903 | MS.gene94189:intron | 45.0% |
| !!! | TTTATTTTTAAATCTTTTTT+AGG | + | chr5.4:66278866-66278885 | MS.gene94189:intron | 5.0% |
| AAAGCTGTGGCAGATGGTGA+TGG | + | chr5.4:66280147-66280166 | MS.gene94189:CDS | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr5.4:66279904-66279923 | None:intergenic | 50.0% | |
| CAGCAATGTGCACGTTGCTA+GGG | - | chr5.4:66280221-66280240 | None:intergenic | 50.0% | |
| CTGTCCTTTCTCCAATCCCA+TGG | - | chr5.4:66281064-66281083 | None:intergenic | 50.0% | |
| GAAGCCATGGGATTGGAGAA+AGG | + | chr5.4:66281057-66281076 | MS.gene94189:CDS | 50.0% | |
| GATGCAAAAGCTGTGGCAGA+TGG | + | chr5.4:66280141-66280160 | MS.gene94189:CDS | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | + | chr5.4:66279926-66279945 | MS.gene94189:intron | 50.0% | |
| TAATCCAACTCGCTTCGCTC+TGG | - | chr5.4:66281017-66281036 | None:intergenic | 50.0% | |
| TATTGACGCGGGATATCGGT+TGG | + | chr5.4:66280308-66280327 | MS.gene94189:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | chr5.4:66279927-66279946 | MS.gene94189:intron | 50.0% | |
| TCTCCAATCCCATGGCTTCT+CGG | - | chr5.4:66281056-66281075 | None:intergenic | 50.0% | |
| ! | CCGTATGGCATTGCGTTTTC+TGG | - | chr5.4:66280582-66280601 | None:intergenic | 50.0% |
| ! | GAGCGAAGCGAGTTGGATTA+TGG | + | chr5.4:66281017-66281036 | MS.gene94189:CDS | 50.0% |
| ! | GGGACCCTTGATGATTCTCT+AGG | - | chr5.4:66280201-66280220 | None:intergenic | 50.0% |
| AAGAGGCAAGACCACCACCT+AGG | + | chr5.4:66279108-66279127 | MS.gene94189:CDS | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr5.4:66279939-66279958 | MS.gene94189:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr5.4:66280037-66280056 | None:intergenic | 55.0% | |
| ATCCCGAGAAGCCATGGGAT+TGG | + | chr5.4:66281050-66281069 | MS.gene94189:CDS | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr5.4:66280036-66280055 | None:intergenic | 55.0% | |
| CTCCAATCCCATGGCTTCTC+GGG | - | chr5.4:66281055-66281074 | None:intergenic | 55.0% | |
| GCAGCAATGTGCACGTTGCT+AGG | - | chr5.4:66280222-66280241 | None:intergenic | 55.0% | |
| GCTGCTTCTTCAGGTGTCCT+AGG | - | chr5.4:66279128-66279147 | None:intergenic | 55.0% | |
| GCTTCTTCAGGTGTCCTAGG+TGG | - | chr5.4:66279125-66279144 | None:intergenic | 55.0% | |
| TCTTCAGGTGTCCTAGGTGG+TGG | - | chr5.4:66279122-66279141 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr5.4:66280041-66280060 | MS.gene94189:intron | 55.0% |
| ! | GAGCAGAAGCCCGTTCTAGA+AGG | + | chr5.4:66280250-66280269 | MS.gene94189:CDS | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr5.4:66279893-66279912 | MS.gene94189:intron | 60.0% | |
| GAAGCCAGAGCGAAGCGAGT+TGG | + | chr5.4:66281010-66281029 | MS.gene94189:CDS | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr5.4:66280009-66280028 | MS.gene94189:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr5.4:66280042-66280061 | MS.gene94189:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr5.4:66280024-66280043 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr5.4:66280011-66280030 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr5.4:66280024-66280043 | MS.gene94189:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr5.4:66280025-66280044 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr5.4:66280025-66280044 | MS.gene94189:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr5.4:66280026-66280045 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr5.4:66280030-66280049 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr5.4:66280031-66280050 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66278624 | 66281093 | 66278624 | ID=MS.gene94189 |
| chr5.4 | mRNA | 66278624 | 66281093 | 66278624 | ID=MS.gene94189.t1;Parent=MS.gene94189 |
| chr5.4 | exon | 66278624 | 66278752 | 66278624 | ID=MS.gene94189.t1.exon1;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66278624 | 66278752 | 66278624 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66278888 | 66278943 | 66278888 | ID=MS.gene94189.t1.exon2;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66278888 | 66278943 | 66278888 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66279082 | 66279196 | 66279082 | ID=MS.gene94189.t1.exon3;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66279082 | 66279196 | 66279082 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66279324 | 66279437 | 66279324 | ID=MS.gene94189.t1.exon4;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66279324 | 66279437 | 66279324 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66280138 | 66280325 | 66280138 | ID=MS.gene94189.t1.exon5;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66280138 | 66280325 | 66280138 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66280414 | 66280470 | 66280414 | ID=MS.gene94189.t1.exon6;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66280414 | 66280470 | 66280414 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66280566 | 66280725 | 66280566 | ID=MS.gene94189.t1.exon7;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66280566 | 66280725 | 66280566 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66280814 | 66280882 | 66280814 | ID=MS.gene94189.t1.exon8;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66280814 | 66280882 | 66280814 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| chr5.4 | exon | 66281001 | 66281093 | 66281001 | ID=MS.gene94189.t1.exon9;Parent=MS.gene94189.t1 |
| chr5.4 | CDS | 66281001 | 66281093 | 66281001 | ID=cds.MS.gene94189.t1;Parent=MS.gene94189.t1 |
| Gene Sequence |
| Protein sequence |
