Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94572.t1 | XP_003596716.1 | 96.4 | 274 | 10 | 0 | 1 | 274 | 45 | 318 | 9.30E-146 | 526.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94572.t1 | Q9FLC0 | 64.8 | 273 | 93 | 2 | 4 | 274 | 53 | 324 | 1.5e-96 | 354.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94572.t1 | G7IM81 | 96.4 | 274 | 10 | 0 | 1 | 274 | 45 | 318 | 6.7e-146 | 526.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056677 | MS.gene94572 | 0.812483 | 4.15E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94572.t1 | MTR_2g084010 | 96.350 | 274 | 10 | 0 | 1 | 274 | 45 | 318 | 0.0 | 541 |
MS.gene94572.t1 | MTR_2g084020 | 93.066 | 274 | 19 | 0 | 1 | 274 | 45 | 318 | 0.0 | 526 |
MS.gene94572.t1 | MTR_2g084110 | 86.496 | 274 | 36 | 1 | 1 | 274 | 45 | 317 | 2.40e-176 | 488 |
MS.gene94572.t1 | MTR_2g084080 | 86.131 | 274 | 37 | 1 | 1 | 274 | 45 | 317 | 8.65e-176 | 487 |
MS.gene94572.t1 | MTR_2g084000 | 83.942 | 274 | 44 | 0 | 1 | 274 | 46 | 319 | 8.15e-175 | 485 |
MS.gene94572.t1 | MTR_2g084090 | 77.455 | 275 | 60 | 2 | 1 | 274 | 45 | 318 | 8.43e-155 | 434 |
MS.gene94572.t1 | MTR_3g094650 | 69.231 | 273 | 81 | 2 | 4 | 274 | 51 | 322 | 1.50e-133 | 380 |
MS.gene94572.t1 | MTR_3g094670 | 70.696 | 273 | 77 | 3 | 4 | 274 | 51 | 322 | 1.00e-131 | 376 |
MS.gene94572.t1 | MTR_3g094630 | 67.391 | 276 | 87 | 2 | 1 | 274 | 48 | 322 | 1.06e-125 | 360 |
MS.gene94572.t1 | MTR_5g083860 | 63.736 | 273 | 96 | 2 | 4 | 274 | 54 | 325 | 1.42e-124 | 358 |
MS.gene94572.t1 | MTR_7g072510 | 62.044 | 274 | 103 | 1 | 1 | 274 | 40 | 312 | 7.14e-124 | 355 |
MS.gene94572.t1 | MTR_3g466200 | 59.124 | 274 | 108 | 3 | 4 | 274 | 48 | 320 | 2.29e-117 | 339 |
MS.gene94572.t1 | MTR_7g072480 | 59.779 | 271 | 108 | 1 | 4 | 274 | 47 | 316 | 5.59e-117 | 338 |
MS.gene94572.t1 | MTR_3g466180 | 62.731 | 271 | 100 | 1 | 4 | 274 | 54 | 323 | 1.92e-112 | 327 |
MS.gene94572.t1 | MTR_4g029170 | 60.073 | 273 | 106 | 3 | 4 | 274 | 50 | 321 | 2.61e-112 | 327 |
MS.gene94572.t1 | MTR_1g115900 | 60.073 | 273 | 106 | 2 | 4 | 274 | 50 | 321 | 9.10e-112 | 325 |
MS.gene94572.t1 | MTR_5g074860 | 59.854 | 274 | 105 | 4 | 4 | 273 | 52 | 324 | 2.56e-111 | 324 |
MS.gene94572.t1 | MTR_3g072190 | 59.779 | 271 | 108 | 1 | 4 | 274 | 49 | 318 | 5.36e-111 | 323 |
MS.gene94572.t1 | MTR_5g074970 | 58.909 | 275 | 108 | 3 | 4 | 274 | 53 | 326 | 5.44e-111 | 323 |
MS.gene94572.t1 | MTR_7g026990 | 57.196 | 271 | 114 | 2 | 4 | 274 | 54 | 322 | 5.68e-110 | 321 |
MS.gene94572.t1 | MTR_5g074760 | 58.633 | 278 | 110 | 4 | 1 | 274 | 45 | 321 | 6.99e-110 | 320 |
MS.gene94572.t1 | MTR_5g074740 | 58.273 | 278 | 111 | 4 | 1 | 274 | 45 | 321 | 4.23e-109 | 318 |
MS.gene94572.t1 | MTR_4g029200 | 56.569 | 274 | 118 | 1 | 1 | 274 | 66 | 338 | 1.04e-108 | 318 |
MS.gene94572.t1 | MTR_4g029180 | 58.242 | 273 | 111 | 3 | 4 | 274 | 50 | 321 | 1.60e-108 | 317 |
MS.gene94572.t1 | MTR_5g074710 | 58.633 | 278 | 110 | 4 | 1 | 274 | 45 | 321 | 3.88e-108 | 316 |
MS.gene94572.t1 | MTR_4g029190 | 56.884 | 276 | 116 | 2 | 1 | 274 | 66 | 340 | 5.95e-108 | 316 |
MS.gene94572.t1 | MTR_4g083710 | 56.727 | 275 | 115 | 2 | 4 | 274 | 50 | 324 | 5.15e-107 | 313 |
MS.gene94572.t1 | MTR_3g467600 | 55.072 | 276 | 120 | 3 | 3 | 274 | 49 | 324 | 6.67e-104 | 305 |
MS.gene94572.t1 | MTR_5g021060 | 53.025 | 281 | 125 | 1 | 1 | 274 | 50 | 330 | 1.45e-103 | 305 |
MS.gene94572.t1 | MTR_4g074995 | 54.545 | 275 | 108 | 3 | 4 | 274 | 47 | 308 | 5.51e-100 | 295 |
MS.gene94572.t1 | MTR_8g076820 | 50.534 | 281 | 132 | 1 | 1 | 274 | 50 | 330 | 1.10e-98 | 292 |
MS.gene94572.t1 | MTR_5g017860 | 53.901 | 282 | 120 | 4 | 1 | 274 | 47 | 326 | 1.78e-98 | 291 |
MS.gene94572.t1 | MTR_3g072190 | 57.371 | 251 | 106 | 1 | 24 | 274 | 2 | 251 | 3.82e-97 | 285 |
MS.gene94572.t1 | MTR_5g017850 | 53.191 | 282 | 122 | 4 | 1 | 274 | 47 | 326 | 8.70e-97 | 287 |
MS.gene94572.t1 | MTR_1g054205 | 50.883 | 283 | 130 | 3 | 1 | 274 | 44 | 326 | 1.45e-94 | 281 |
MS.gene94572.t1 | MTR_1g022970 | 51.064 | 282 | 130 | 2 | 1 | 274 | 66 | 347 | 2.10e-93 | 279 |
MS.gene94572.t1 | MTR_4g074990 | 52.000 | 275 | 112 | 3 | 4 | 274 | 47 | 305 | 3.13e-92 | 275 |
MS.gene94572.t1 | MTR_2g040000 | 50.709 | 282 | 126 | 3 | 4 | 274 | 52 | 331 | 2.04e-91 | 274 |
MS.gene94572.t1 | MTR_7g093370 | 48.763 | 283 | 136 | 3 | 1 | 274 | 89 | 371 | 2.57e-91 | 275 |
MS.gene94572.t1 | MTR_4g125940 | 50.352 | 284 | 129 | 3 | 1 | 274 | 48 | 329 | 2.86e-91 | 273 |
MS.gene94572.t1 | MTR_4g122640 | 48.029 | 279 | 140 | 1 | 1 | 274 | 58 | 336 | 4.97e-90 | 270 |
MS.gene94572.t1 | MTR_4g125940 | 50.545 | 275 | 124 | 3 | 10 | 274 | 2 | 274 | 7.96e-89 | 265 |
MS.gene94572.t1 | MTR_5g014100 | 48.592 | 284 | 132 | 3 | 4 | 274 | 49 | 331 | 2.84e-86 | 261 |
MS.gene94572.t1 | MTR_2g029860 | 46.809 | 282 | 142 | 2 | 1 | 274 | 49 | 330 | 8.37e-86 | 260 |
MS.gene94572.t1 | MTR_5g049280 | 45.965 | 285 | 143 | 5 | 1 | 274 | 53 | 337 | 1.01e-85 | 259 |
MS.gene94572.t1 | MTR_2g029560 | 47.273 | 275 | 137 | 2 | 8 | 274 | 51 | 325 | 1.11e-85 | 259 |
MS.gene94572.t1 | MTR_5g074860 | 51.460 | 274 | 89 | 6 | 4 | 273 | 52 | 285 | 2.60e-85 | 256 |
MS.gene94572.t1 | MTR_2g029815 | 48.000 | 275 | 135 | 2 | 8 | 274 | 56 | 330 | 6.45e-84 | 255 |
MS.gene94572.t1 | MTR_2g029850 | 48.364 | 275 | 134 | 2 | 8 | 274 | 56 | 330 | 7.51e-84 | 255 |
MS.gene94572.t1 | MTR_2g029830 | 46.454 | 282 | 143 | 2 | 1 | 274 | 48 | 329 | 8.49e-84 | 255 |
MS.gene94572.t1 | MTR_4g030890 | 47.331 | 281 | 137 | 4 | 1 | 274 | 120 | 396 | 2.19e-82 | 253 |
MS.gene94572.t1 | MTR_2g029750 | 46.099 | 282 | 144 | 2 | 1 | 274 | 49 | 330 | 2.41e-82 | 251 |
MS.gene94572.t1 | MTR_2g029800 | 47.273 | 275 | 137 | 2 | 8 | 274 | 56 | 330 | 5.33e-82 | 250 |
MS.gene94572.t1 | MTR_2g028980 | 47.273 | 275 | 137 | 2 | 8 | 274 | 56 | 330 | 1.11e-81 | 250 |
MS.gene94572.t1 | MTR_4g074980 | 48.162 | 272 | 115 | 3 | 4 | 274 | 48 | 294 | 4.57e-81 | 246 |
MS.gene94572.t1 | MTR_2g029740 | 45.390 | 282 | 146 | 2 | 1 | 274 | 49 | 330 | 8.06e-81 | 248 |
MS.gene94572.t1 | MTR_2g029820 | 46.182 | 275 | 140 | 2 | 8 | 274 | 56 | 330 | 1.65e-80 | 247 |
MS.gene94572.t1 | MTR_2g029730 | 45.390 | 282 | 146 | 2 | 1 | 274 | 45 | 326 | 4.35e-80 | 245 |
MS.gene94572.t1 | MTR_3g092990 | 44.286 | 280 | 147 | 3 | 3 | 274 | 48 | 326 | 1.23e-79 | 244 |
MS.gene94572.t1 | MTR_2g029910 | 46.377 | 276 | 139 | 3 | 8 | 274 | 57 | 332 | 1.28e-78 | 242 |
MS.gene94572.t1 | MTR_4g074980 | 55.825 | 206 | 87 | 2 | 4 | 205 | 48 | 253 | 6.01e-76 | 231 |
MS.gene94572.t1 | MTR_4g031140 | 43.416 | 281 | 148 | 4 | 1 | 274 | 48 | 324 | 1.03e-75 | 234 |
MS.gene94572.t1 | MTR_0155s0040 | 42.182 | 275 | 152 | 6 | 1 | 274 | 47 | 315 | 2.40e-75 | 232 |
MS.gene94572.t1 | MTR_2g029830 | 46.484 | 256 | 129 | 2 | 27 | 274 | 6 | 261 | 7.27e-75 | 230 |
MS.gene94572.t1 | MTR_2g088770 | 43.214 | 280 | 149 | 4 | 3 | 274 | 48 | 325 | 7.69e-71 | 221 |
MS.gene94572.t1 | MTR_3g092990 | 44.531 | 256 | 133 | 3 | 27 | 274 | 61 | 315 | 5.00e-70 | 219 |
MS.gene94572.t1 | MTR_2g008710 | 43.772 | 281 | 141 | 6 | 5 | 274 | 51 | 325 | 1.65e-69 | 218 |
MS.gene94572.t1 | MTR_5g074700 | 50.661 | 227 | 93 | 5 | 52 | 274 | 3 | 214 | 2.37e-69 | 213 |
MS.gene94572.t1 | MTR_1g009750 | 44.815 | 270 | 135 | 7 | 16 | 274 | 62 | 328 | 1.13e-67 | 213 |
MS.gene94572.t1 | MTR_7g107520 | 42.652 | 279 | 148 | 4 | 3 | 274 | 47 | 320 | 1.72e-67 | 212 |
MS.gene94572.t1 | MTR_8g075100 | 40.714 | 280 | 148 | 6 | 4 | 274 | 49 | 319 | 1.80e-67 | 212 |
MS.gene94572.t1 | MTR_4g114210 | 43.617 | 282 | 141 | 6 | 5 | 274 | 45 | 320 | 2.26e-67 | 212 |
MS.gene94572.t1 | MTR_4g046713 | 41.367 | 278 | 153 | 4 | 5 | 274 | 51 | 326 | 4.41e-67 | 211 |
MS.gene94572.t1 | MTR_5g022870 | 40.989 | 283 | 149 | 6 | 1 | 274 | 43 | 316 | 1.01e-66 | 210 |
MS.gene94572.t1 | MTR_7g086820 | 39.929 | 283 | 151 | 6 | 1 | 274 | 40 | 312 | 2.37e-66 | 209 |
MS.gene94572.t1 | MTR_1g101830 | 40.580 | 276 | 150 | 7 | 7 | 274 | 53 | 322 | 2.72e-66 | 209 |
MS.gene94572.t1 | MTR_1g025980 | 41.637 | 281 | 145 | 8 | 3 | 273 | 46 | 317 | 3.18e-66 | 209 |
MS.gene94572.t1 | MTR_1g077000 | 41.026 | 273 | 154 | 6 | 3 | 274 | 61 | 327 | 3.77e-65 | 206 |
MS.gene94572.t1 | MTR_7g029030 | 41.573 | 267 | 150 | 4 | 12 | 274 | 56 | 320 | 1.06e-64 | 205 |
MS.gene94572.t1 | MTR_7g086870 | 39.855 | 276 | 158 | 6 | 1 | 274 | 42 | 311 | 8.59e-64 | 202 |
MS.gene94572.t1 | MTR_6g027440 | 42.751 | 269 | 144 | 6 | 11 | 274 | 51 | 314 | 8.73e-64 | 203 |
MS.gene94572.t1 | MTR_1g086320 | 40.210 | 286 | 157 | 5 | 1 | 274 | 50 | 333 | 9.68e-64 | 203 |
MS.gene94572.t1 | MTR_1g038680 | 41.754 | 285 | 154 | 5 | 1 | 274 | 49 | 332 | 1.13e-63 | 203 |
MS.gene94572.t1 | MTR_4g133800 | 40.288 | 278 | 149 | 6 | 5 | 274 | 65 | 333 | 1.06e-62 | 201 |
MS.gene94572.t1 | MTR_2g437770 | 39.716 | 282 | 152 | 7 | 1 | 274 | 70 | 341 | 8.45e-62 | 198 |
MS.gene94572.t1 | MTR_5g016010 | 40.299 | 268 | 149 | 4 | 16 | 273 | 62 | 328 | 6.67e-61 | 196 |
MS.gene94572.t1 | MTR_4g087965 | 42.491 | 273 | 144 | 7 | 12 | 272 | 73 | 344 | 3.00e-60 | 194 |
MS.gene94572.t1 | MTR_3g072210 | 54.054 | 185 | 84 | 1 | 91 | 274 | 54 | 238 | 1.18e-59 | 189 |
MS.gene94572.t1 | MTR_1g086490 | 38.225 | 293 | 160 | 5 | 1 | 274 | 50 | 340 | 1.99e-59 | 192 |
MS.gene94572.t1 | MTR_6g043280 | 41.367 | 278 | 153 | 7 | 1 | 274 | 61 | 332 | 2.93e-59 | 192 |
MS.gene94572.t1 | MTR_4g095450 | 40.684 | 263 | 150 | 4 | 16 | 273 | 62 | 323 | 5.31e-59 | 191 |
MS.gene94572.t1 | MTR_2g077990 | 37.624 | 303 | 147 | 8 | 11 | 273 | 106 | 406 | 1.52e-56 | 187 |
MS.gene94572.t1 | MTR_4g127670 | 40.755 | 265 | 143 | 5 | 16 | 270 | 59 | 319 | 2.56e-56 | 184 |
MS.gene94572.t1 | MTR_2g078610 | 37.829 | 304 | 147 | 9 | 11 | 274 | 106 | 407 | 4.98e-56 | 185 |
MS.gene94572.t1 | MTR_7g072490 | 42.324 | 241 | 84 | 3 | 27 | 267 | 2 | 187 | 1.96e-55 | 178 |
MS.gene94572.t1 | MTR_2g008160 | 40.876 | 274 | 144 | 8 | 13 | 274 | 56 | 323 | 2.17e-55 | 181 |
MS.gene94572.t1 | MTR_2g008730 | 44.033 | 243 | 122 | 5 | 43 | 274 | 62 | 301 | 3.66e-55 | 180 |
MS.gene94572.t1 | MTR_2g067440 | 35.806 | 310 | 159 | 7 | 1 | 273 | 80 | 386 | 5.08e-55 | 182 |
MS.gene94572.t1 | MTR_1g066710 | 35.401 | 274 | 170 | 4 | 6 | 274 | 52 | 323 | 6.28e-55 | 180 |
MS.gene94572.t1 | MTR_1g090760 | 37.407 | 270 | 158 | 5 | 15 | 274 | 62 | 330 | 8.68e-55 | 180 |
MS.gene94572.t1 | MTR_4g132490 | 35.401 | 274 | 168 | 4 | 8 | 274 | 56 | 327 | 6.38e-54 | 177 |
MS.gene94572.t1 | MTR_6g043240 | 38.768 | 276 | 161 | 6 | 1 | 274 | 62 | 331 | 7.83e-54 | 178 |
MS.gene94572.t1 | MTR_2g099175 | 36.299 | 281 | 161 | 5 | 6 | 274 | 61 | 335 | 8.98e-54 | 177 |
MS.gene94572.t1 | MTR_3g105790 | 38.129 | 278 | 158 | 3 | 6 | 274 | 50 | 322 | 2.48e-53 | 176 |
MS.gene94572.t1 | MTR_1g066640 | 35.125 | 279 | 174 | 4 | 1 | 274 | 47 | 323 | 7.62e-53 | 175 |
MS.gene94572.t1 | MTR_1g009750 | 38.889 | 270 | 134 | 8 | 16 | 274 | 62 | 311 | 1.48e-52 | 174 |
MS.gene94572.t1 | MTR_1g066380 | 34.307 | 274 | 173 | 4 | 6 | 274 | 52 | 323 | 7.01e-51 | 170 |
MS.gene94572.t1 | MTR_2g078280 | 36.678 | 289 | 142 | 7 | 11 | 260 | 106 | 392 | 1.27e-50 | 171 |
MS.gene94572.t1 | MTR_6g043460 | 39.147 | 258 | 152 | 5 | 15 | 270 | 70 | 324 | 1.32e-50 | 170 |
MS.gene94572.t1 | MTR_0286s0010 | 36.364 | 275 | 158 | 6 | 12 | 274 | 65 | 334 | 1.54e-50 | 169 |
MS.gene94572.t1 | MTR_6g008075 | 36.364 | 275 | 158 | 6 | 12 | 274 | 65 | 334 | 1.54e-50 | 169 |
MS.gene94572.t1 | MTR_1g066680 | 34.799 | 273 | 171 | 4 | 7 | 274 | 52 | 322 | 2.20e-50 | 168 |
MS.gene94572.t1 | MTR_8g062780 | 37.313 | 268 | 158 | 5 | 16 | 274 | 58 | 324 | 4.20e-49 | 165 |
MS.gene94572.t1 | MTR_2g067450 | 37.500 | 264 | 152 | 6 | 20 | 273 | 49 | 309 | 8.28e-48 | 161 |
MS.gene94572.t1 | MTR_4g132110 | 35.338 | 266 | 165 | 4 | 14 | 274 | 65 | 328 | 9.76e-46 | 157 |
MS.gene94572.t1 | MTR_5g033470 | 35.231 | 281 | 155 | 7 | 13 | 274 | 105 | 377 | 1.33e-45 | 157 |
MS.gene94572.t1 | MTR_1g066380 | 33.725 | 255 | 162 | 4 | 25 | 274 | 3 | 255 | 2.47e-45 | 153 |
MS.gene94572.t1 | MTR_0147s0010 | 32.753 | 287 | 151 | 5 | 14 | 273 | 110 | 381 | 4.50e-45 | 156 |
MS.gene94572.t1 | MTR_4g132110 | 34.686 | 271 | 165 | 5 | 14 | 274 | 65 | 333 | 2.18e-43 | 150 |
MS.gene94572.t1 | MTR_3g105790 | 37.500 | 240 | 140 | 2 | 44 | 274 | 8 | 246 | 6.54e-42 | 144 |
MS.gene94572.t1 | MTR_2g008160 | 36.940 | 268 | 128 | 8 | 13 | 274 | 56 | 288 | 7.64e-42 | 145 |
MS.gene94572.t1 | MTR_2g029880 | 38.579 | 197 | 101 | 4 | 87 | 274 | 3 | 188 | 1.70e-38 | 134 |
MS.gene94572.t1 | MTR_3g072260 | 70.455 | 88 | 26 | 0 | 1 | 88 | 46 | 133 | 1.33e-37 | 130 |
MS.gene94572.t1 | MTR_2g008160 | 48.921 | 139 | 67 | 3 | 12 | 150 | 55 | 189 | 7.25e-36 | 127 |
MS.gene94572.t1 | MTR_2g077980 | 31.295 | 278 | 142 | 10 | 43 | 274 | 11 | 285 | 2.02e-27 | 107 |
MS.gene94572.t1 | MTR_5g074770 | 52.222 | 90 | 41 | 2 | 185 | 273 | 20 | 108 | 7.23e-25 | 95.9 |
MS.gene94572.t1 | MTR_2g078560 | 30.415 | 217 | 112 | 5 | 92 | 270 | 101 | 316 | 7.36e-25 | 101 |
MS.gene94572.t1 | MTR_3g462850 | 40.411 | 146 | 74 | 7 | 141 | 274 | 5 | 149 | 1.06e-24 | 96.7 |
MS.gene94572.t1 | MTR_7g086790 | 40.833 | 120 | 67 | 2 | 28 | 147 | 17 | 132 | 2.29e-24 | 97.4 |
MS.gene94572.t1 | MTR_4g031040 | 34.545 | 165 | 71 | 3 | 42 | 206 | 3 | 130 | 6.29e-21 | 86.7 |
MS.gene94572.t1 | MTR_4g114220 | 50.588 | 85 | 32 | 2 | 6 | 90 | 28 | 102 | 3.10e-19 | 82.0 |
MS.gene94572.t1 | MTR_5g058120 | 34.416 | 154 | 96 | 3 | 117 | 270 | 7 | 155 | 2.31e-18 | 82.4 |
MS.gene94572.t1 | MTR_6g048160 | 51.389 | 72 | 31 | 2 | 20 | 91 | 22 | 89 | 7.10e-17 | 74.3 |
MS.gene94572.t1 | MTR_3g107060 | 25.490 | 255 | 126 | 7 | 13 | 253 | 106 | 310 | 3.51e-15 | 74.7 |
MS.gene94572.t1 | MTR_1g089005 | 48.315 | 89 | 39 | 2 | 11 | 93 | 45 | 132 | 2.13e-14 | 69.3 |
MS.gene94572.t1 | MTR_7g107500 | 43.529 | 85 | 46 | 1 | 190 | 274 | 15 | 97 | 3.31e-13 | 64.7 |
MS.gene94572.t1 | MTR_7g086785 | 30.303 | 132 | 91 | 1 | 27 | 158 | 4 | 134 | 3.39e-13 | 65.9 |
MS.gene94572.t1 | MTR_1g098320 | 43.038 | 79 | 44 | 1 | 196 | 274 | 47 | 124 | 5.54e-13 | 65.1 |
MS.gene94572.t1 | MTR_7g086810 | 33.333 | 99 | 40 | 1 | 1 | 99 | 26 | 98 | 1.97e-11 | 62.8 |
MS.gene94572.t1 | MTR_2g029930 | 43.662 | 71 | 26 | 2 | 8 | 64 | 32 | 102 | 3.04e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94572.t1 | AT5G05340 | 64.130 | 276 | 96 | 2 | 1 | 274 | 50 | 324 | 2.90e-127 | 365 |
MS.gene94572.t1 | AT5G58390 | 60.370 | 270 | 103 | 3 | 8 | 274 | 48 | 316 | 1.00e-109 | 320 |
MS.gene94572.t1 | AT5G58400 | 57.762 | 277 | 113 | 3 | 1 | 274 | 50 | 325 | 5.95e-107 | 313 |
MS.gene94572.t1 | AT1G14550 | 53.846 | 273 | 124 | 2 | 4 | 274 | 49 | 321 | 2.41e-101 | 299 |
MS.gene94572.t1 | AT4G36430 | 50.534 | 281 | 132 | 1 | 1 | 274 | 50 | 330 | 1.09e-100 | 297 |
MS.gene94572.t1 | AT5G66390 | 51.601 | 281 | 129 | 1 | 1 | 274 | 53 | 333 | 3.21e-99 | 294 |
MS.gene94572.t1 | AT3G50990 | 52.518 | 278 | 125 | 1 | 4 | 274 | 64 | 341 | 3.56e-99 | 294 |
MS.gene94572.t1 | AT1G44970 | 53.901 | 282 | 122 | 2 | 1 | 274 | 65 | 346 | 5.30e-98 | 291 |
MS.gene94572.t1 | AT2G18140 | 49.822 | 281 | 134 | 1 | 1 | 274 | 55 | 335 | 6.01e-98 | 291 |
MS.gene94572.t1 | AT2G18150 | 49.466 | 281 | 135 | 1 | 1 | 274 | 56 | 336 | 1.99e-97 | 289 |
MS.gene94572.t1 | AT1G14540 | 51.471 | 272 | 131 | 1 | 4 | 274 | 44 | 315 | 4.27e-97 | 288 |
MS.gene94572.t1 | AT1G49570 | 52.518 | 278 | 121 | 4 | 3 | 270 | 70 | 346 | 1.22e-95 | 285 |
MS.gene94572.t1 | AT5G06720 | 48.936 | 282 | 136 | 2 | 1 | 274 | 52 | 333 | 8.92e-94 | 280 |
MS.gene94572.t1 | AT5G06730 | 48.227 | 282 | 138 | 2 | 1 | 274 | 53 | 334 | 2.15e-92 | 277 |
MS.gene94572.t1 | AT4G08780 | 49.123 | 285 | 133 | 5 | 1 | 274 | 44 | 327 | 2.59e-89 | 269 |
MS.gene94572.t1 | AT2G38390 | 48.057 | 283 | 138 | 3 | 1 | 274 | 51 | 333 | 2.70e-89 | 269 |
MS.gene94572.t1 | AT3G32980 | 48.239 | 284 | 137 | 3 | 1 | 274 | 51 | 334 | 5.68e-88 | 266 |
MS.gene94572.t1 | AT4G08770 | 47.887 | 284 | 138 | 3 | 1 | 274 | 44 | 327 | 5.87e-88 | 265 |
MS.gene94572.t1 | AT5G19890 | 49.822 | 281 | 125 | 5 | 4 | 274 | 53 | 327 | 7.62e-86 | 259 |
MS.gene94572.t1 | AT4G16270 | 49.091 | 275 | 131 | 3 | 7 | 274 | 76 | 348 | 1.46e-85 | 259 |
MS.gene94572.t1 | AT3G49120 | 47.183 | 284 | 140 | 3 | 1 | 274 | 52 | 335 | 6.67e-84 | 255 |
MS.gene94572.t1 | AT2G38380 | 46.643 | 283 | 142 | 3 | 1 | 274 | 51 | 333 | 8.36e-84 | 255 |
MS.gene94572.t1 | AT3G49110 | 46.479 | 284 | 142 | 3 | 1 | 274 | 53 | 336 | 2.91e-83 | 254 |
MS.gene94572.t1 | AT1G68850 | 42.857 | 287 | 150 | 6 | 1 | 274 | 50 | 335 | 1.94e-81 | 248 |
MS.gene94572.t1 | AT2G35380 | 47.535 | 284 | 135 | 4 | 4 | 274 | 53 | 335 | 6.46e-81 | 247 |
MS.gene94572.t1 | AT2G22420 | 43.772 | 281 | 147 | 4 | 1 | 274 | 43 | 319 | 3.63e-78 | 240 |
MS.gene94572.t1 | AT5G19880 | 44.912 | 285 | 146 | 3 | 1 | 274 | 45 | 329 | 2.04e-75 | 233 |
MS.gene94572.t1 | AT5G15180 | 43.011 | 279 | 149 | 4 | 3 | 274 | 54 | 329 | 2.46e-75 | 233 |
MS.gene94572.t1 | AT3G03670 | 43.066 | 274 | 147 | 3 | 8 | 274 | 50 | 321 | 8.01e-71 | 221 |
MS.gene94572.t1 | AT1G05260 | 40.426 | 282 | 158 | 4 | 1 | 274 | 46 | 325 | 1.45e-70 | 220 |
MS.gene94572.t1 | AT4G11290 | 40.780 | 282 | 159 | 2 | 1 | 274 | 45 | 326 | 3.26e-70 | 219 |
MS.gene94572.t1 | AT3G01190 | 42.806 | 278 | 147 | 5 | 4 | 274 | 49 | 321 | 1.62e-69 | 218 |
MS.gene94572.t1 | AT5G64120 | 44.364 | 275 | 141 | 5 | 6 | 274 | 60 | 328 | 2.82e-69 | 217 |
MS.gene94572.t1 | AT1G05240 | 40.909 | 286 | 149 | 6 | 2 | 274 | 47 | 325 | 3.14e-69 | 217 |
MS.gene94572.t1 | AT1G05250 | 40.909 | 286 | 149 | 6 | 2 | 274 | 47 | 325 | 3.14e-69 | 217 |
MS.gene94572.t1 | AT2G41480 | 42.908 | 282 | 143 | 6 | 5 | 274 | 53 | 328 | 8.78e-68 | 213 |
MS.gene94572.t1 | AT5G42180 | 40.714 | 280 | 153 | 5 | 1 | 273 | 43 | 316 | 5.49e-67 | 211 |
MS.gene94572.t1 | AT2G35380 | 46.939 | 245 | 116 | 4 | 43 | 274 | 4 | 247 | 6.01e-66 | 206 |
MS.gene94572.t1 | AT5G17820 | 41.697 | 271 | 140 | 6 | 11 | 274 | 54 | 313 | 6.84e-66 | 208 |
MS.gene94572.t1 | AT3G21770 | 40.146 | 274 | 154 | 4 | 5 | 270 | 53 | 324 | 1.12e-65 | 208 |
MS.gene94572.t1 | AT5G17820 | 41.697 | 271 | 140 | 6 | 11 | 274 | 107 | 366 | 6.44e-65 | 207 |
MS.gene94572.t1 | AT5G14130 | 42.322 | 267 | 143 | 5 | 16 | 274 | 67 | 330 | 8.13e-65 | 206 |
MS.gene94572.t1 | AT5G14130 | 42.322 | 267 | 143 | 5 | 16 | 274 | 108 | 371 | 2.07e-64 | 206 |
MS.gene94572.t1 | AT4G30170 | 42.963 | 270 | 137 | 7 | 16 | 274 | 62 | 325 | 2.01e-63 | 202 |
MS.gene94572.t1 | AT1G71695 | 41.241 | 274 | 155 | 5 | 1 | 270 | 64 | 335 | 6.32e-63 | 202 |
MS.gene94572.t1 | AT4G37530 | 40.892 | 269 | 148 | 4 | 16 | 274 | 62 | 329 | 9.22e-63 | 201 |
MS.gene94572.t1 | AT5G39580 | 42.182 | 275 | 146 | 6 | 7 | 274 | 51 | 319 | 8.24e-62 | 197 |
MS.gene94572.t1 | AT4G33420 | 40.441 | 272 | 155 | 6 | 4 | 274 | 60 | 325 | 1.10e-61 | 197 |
MS.gene94572.t1 | AT5G40150 | 40.075 | 267 | 155 | 4 | 12 | 274 | 63 | 328 | 1.26e-61 | 197 |
MS.gene94572.t1 | AT3G28200 | 39.636 | 275 | 161 | 5 | 3 | 274 | 44 | 316 | 1.42e-61 | 197 |
MS.gene94572.t1 | AT4G33420 | 40.441 | 272 | 155 | 6 | 4 | 274 | 107 | 372 | 3.40e-61 | 198 |
MS.gene94572.t1 | AT4G33870 | 36.184 | 304 | 146 | 7 | 11 | 270 | 98 | 397 | 3.87e-61 | 199 |
MS.gene94572.t1 | AT5G64110 | 43.866 | 269 | 136 | 6 | 15 | 274 | 68 | 330 | 3.95e-61 | 196 |
MS.gene94572.t1 | AT5G51890 | 39.493 | 276 | 152 | 7 | 8 | 274 | 53 | 322 | 1.74e-60 | 194 |
MS.gene94572.t1 | AT4G37520 | 38.951 | 267 | 152 | 4 | 14 | 270 | 60 | 325 | 4.12e-60 | 194 |
MS.gene94572.t1 | AT1G30870 | 39.636 | 275 | 147 | 7 | 6 | 270 | 76 | 341 | 4.70e-60 | 194 |
MS.gene94572.t1 | AT2G18980 | 41.264 | 269 | 143 | 5 | 16 | 274 | 60 | 323 | 1.83e-59 | 192 |
MS.gene94572.t1 | AT2G34060 | 40.860 | 279 | 151 | 7 | 7 | 272 | 67 | 344 | 1.68e-58 | 190 |
MS.gene94572.t1 | AT5G67400 | 39.777 | 269 | 151 | 4 | 16 | 274 | 62 | 329 | 2.26e-58 | 189 |
MS.gene94572.t1 | AT5G64100 | 41.264 | 269 | 141 | 6 | 15 | 274 | 71 | 331 | 3.51e-58 | 189 |
MS.gene94572.t1 | AT4G26010 | 40.226 | 266 | 149 | 7 | 11 | 274 | 52 | 309 | 6.82e-58 | 187 |
MS.gene94572.t1 | AT4G37520 | 38.376 | 271 | 153 | 5 | 14 | 274 | 60 | 326 | 7.49e-58 | 188 |
MS.gene94572.t1 | AT4G26010 | 40.226 | 266 | 149 | 7 | 11 | 274 | 80 | 337 | 1.06e-57 | 188 |
MS.gene94572.t1 | AT3G49960 | 39.777 | 269 | 151 | 4 | 16 | 274 | 62 | 329 | 2.57e-57 | 186 |
MS.gene94572.t1 | AT4G17690 | 37.410 | 278 | 169 | 4 | 1 | 274 | 46 | 322 | 1.77e-56 | 184 |
MS.gene94572.t1 | AT2G39040 | 39.236 | 288 | 158 | 7 | 1 | 274 | 66 | 350 | 3.30e-56 | 184 |
MS.gene94572.t1 | AT5G24070 | 36.713 | 286 | 162 | 5 | 1 | 274 | 57 | 335 | 2.61e-55 | 182 |
MS.gene94572.t1 | AT4G25980 | 37.722 | 281 | 156 | 8 | 7 | 274 | 52 | 326 | 4.90e-55 | 181 |
MS.gene94572.t1 | AT4G31760 | 36.429 | 280 | 164 | 3 | 4 | 274 | 52 | 326 | 3.21e-54 | 178 |
MS.gene94572.t1 | AT1G34510 | 38.491 | 265 | 155 | 6 | 11 | 274 | 52 | 309 | 1.68e-53 | 176 |
MS.gene94572.t1 | AT2G43480 | 36.299 | 281 | 158 | 6 | 7 | 274 | 63 | 335 | 3.01e-53 | 176 |
MS.gene94572.t1 | AT4G37530 | 42.857 | 217 | 114 | 3 | 16 | 222 | 62 | 278 | 5.92e-53 | 174 |
MS.gene94572.t1 | AT5G22410 | 37.011 | 281 | 157 | 8 | 3 | 271 | 50 | 322 | 2.93e-52 | 174 |
MS.gene94572.t1 | AT1G77100 | 39.576 | 283 | 155 | 10 | 1 | 274 | 44 | 319 | 3.60e-52 | 173 |
MS.gene94572.t1 | AT5G47000 | 36.940 | 268 | 163 | 4 | 12 | 274 | 64 | 330 | 6.78e-52 | 172 |
MS.gene94572.t1 | AT2G24800 | 35.943 | 281 | 165 | 4 | 4 | 274 | 54 | 329 | 2.07e-51 | 171 |
MS.gene94572.t1 | AT1G24110 | 37.313 | 268 | 157 | 5 | 16 | 274 | 57 | 322 | 3.72e-51 | 171 |
MS.gene94572.t1 | AT3G17070 | 37.818 | 275 | 153 | 9 | 13 | 274 | 70 | 339 | 4.28e-48 | 163 |
MS.gene94572.t1 | AT2G37130 | 35.055 | 271 | 164 | 6 | 12 | 274 | 30 | 296 | 6.74e-48 | 161 |
MS.gene94572.t1 | AT2G37130 | 35.055 | 271 | 164 | 6 | 12 | 274 | 61 | 327 | 1.74e-47 | 161 |
MS.gene94572.t1 | AT4G21960 | 34.586 | 266 | 167 | 4 | 14 | 274 | 64 | 327 | 3.12e-47 | 160 |
MS.gene94572.t1 | AT3G17070 | 36.604 | 265 | 149 | 10 | 23 | 274 | 18 | 276 | 2.55e-41 | 144 |
MS.gene94572.t1 | AT5G39580 | 41.143 | 175 | 94 | 4 | 7 | 181 | 51 | 216 | 1.91e-35 | 127 |
MS.gene94572.t1 | AT4G25980 | 45.652 | 138 | 71 | 3 | 11 | 148 | 101 | 234 | 3.76e-35 | 128 |
MS.gene94572.t1 | AT2G24800 | 39.130 | 161 | 92 | 2 | 4 | 162 | 54 | 210 | 8.59e-32 | 118 |
MS.gene94572.t1 | AT3G42570 | 37.634 | 93 | 57 | 1 | 57 | 148 | 57 | 149 | 1.21e-14 | 70.1 |
MS.gene94572.t1 | AT4G35970 | 27.727 | 220 | 104 | 8 | 15 | 223 | 33 | 208 | 2.40e-11 | 62.4 |
Find 48 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGCAAATTGTCCTCTTTC+TGG | 0.146610 | 2.4:+15554991 | MS.gene94572:CDS |
TTCTGGTGGTGACACAAATT+TGG | 0.219197 | 2.4:+15555008 | MS.gene94572:CDS |
AGAGACCTTACAGTCCTTTC+TGG | 0.248623 | 2.4:+15554877 | MS.gene94572:CDS |
GATGACACTTCCACCTTTAC+CGG | 0.277634 | 2.4:+15553557 | MS.gene94572:CDS |
TGTTGGTTCTCAAGTTTCTT+TGG | 0.288110 | 2.4:+15555134 | MS.gene94572:CDS |
GTTCTCAAGTTTCTTTGGTT+AGG | 0.293746 | 2.4:+15555139 | MS.gene94572:CDS |
TTTCATTGTATATGCGATTT+CGG | 0.299036 | 2.4:-15554936 | None:intergenic |
CAGAAGCTGGTGAAGGGATT+TGG | 0.309796 | 2.4:-15554807 | None:intergenic |
GGCTTCATTATTGATAGCTT+TGG | 0.341495 | 2.4:-15552785 | None:intergenic |
TTCTCAAGTTTCTTTGGTTA+GGG | 0.349477 | 2.4:+15555140 | MS.gene94572:CDS |
GTCCTCTCACAGGGACTAAT+GGG | 0.352141 | 2.4:+15555232 | MS.gene94572:CDS |
AGTCCTCTCACAGGGACTAA+TGG | 0.352884 | 2.4:+15555231 | MS.gene94572:CDS |
AGGGATCTTGTTGCTAATAA+AGG | 0.362589 | 2.4:+15555078 | MS.gene94572:CDS |
ATGTGATGGATCAATCTTAT+TGG | 0.376187 | 2.4:+15553535 | MS.gene94572:CDS |
GTTAGGGCTTATAGTAGAAA+TGG | 0.387567 | 2.4:+15555156 | MS.gene94572:CDS |
ATCAATAATGAAGCCCGAAT+TGG | 0.393557 | 2.4:+15552793 | MS.gene94572:CDS |
GGGAAATTAGAAAGAATTGC+AGG | 0.409781 | 2.4:+15555253 | MS.gene94572:CDS |
AAGTATAGAAGCACCAATTC+GGG | 0.411390 | 2.4:-15552806 | None:intergenic |
GAAGTATAGAAGCACCAATT+CGG | 0.422908 | 2.4:-15552807 | None:intergenic |
TAGTTGTTGTCAAAAGTAAC+TGG | 0.428640 | 2.4:-15555051 | None:intergenic |
TTGACATTCTGCTTGTCCTA+TGG | 0.493917 | 2.4:-15554908 | None:intergenic |
CCCTCATGGGTAGTACCACT+TGG | 0.511184 | 2.4:+15554742 | MS.gene94572:CDS |
AAGAGACTTTGCTGTTGCTA+TGG | 0.520915 | 2.4:+15555191 | MS.gene94572:CDS |
CTAGCACTTGCAACTAGAGA+TGG | 0.521717 | 2.4:+15553692 | MS.gene94572:CDS |
AATTAATTTATATAGCTTGG+AGG | 0.537880 | 2.4:+15554718 | MS.gene94572:intron |
TTTGCAAGAAGCTTCAACAC+TGG | 0.540754 | 2.4:-15553645 | None:intergenic |
CTTGCATCTCTTCTTCCAAG+TGG | 0.553652 | 2.4:-15554757 | None:intergenic |
TGCAAAGTTTGTGTCAATGT+TGG | 0.554512 | 2.4:-15554959 | None:intergenic |
TATAGCTTGGAGGACCCTCA+TGG | 0.556831 | 2.4:+15554728 | MS.gene94572:intron |
AACTAGAGATGGAATAGCAC+TGG | 0.557344 | 2.4:+15553703 | MS.gene94572:CDS |
TTTGTGTCACCACCAGAAAG+AGG | 0.559647 | 2.4:-15555003 | None:intergenic |
AGTAGAATTAGTCCTCTCAC+AGG | 0.564035 | 2.4:+15555222 | MS.gene94572:CDS |
CTTTCTGGTGCACACACCAT+AGG | 0.564632 | 2.4:+15554892 | MS.gene94572:CDS |
GTGCACCAGAAAGGACTGTA+AGG | 0.568848 | 2.4:-15554882 | None:intergenic |
GATAGGTCAGAAGCTGGTGA+AGG | 0.571185 | 2.4:-15554814 | None:intergenic |
GCAAATTGTCCTCTTTCTGG+TGG | 0.573877 | 2.4:+15554994 | MS.gene94572:CDS |
ACTAAAATGTTTCAAAACAA+AGG | 0.575966 | 2.4:+15554844 | MS.gene94572:CDS |
TCCCCATTAGTCCCTGTGAG+AGG | 0.604797 | 2.4:-15555234 | None:intergenic |
ATAGCTTGGAGGACCCTCAT+GGG | 0.605201 | 2.4:+15554729 | MS.gene94572:intron |
CCAAGTGGTACTACCCATGA+GGG | 0.635598 | 2.4:-15554742 | None:intergenic |
ATAGGTCAGAAGCTGGTGAA+GGG | 0.643236 | 2.4:-15554813 | None:intergenic |
TCCAAGTGGTACTACCCATG+AGG | 0.651245 | 2.4:-15554743 | None:intergenic |
AGTGTGGATAGGTCAGAAGC+TGG | 0.662213 | 2.4:-15554820 | None:intergenic |
CTATGGTGTGTGCACCAGAA+AGG | 0.665212 | 2.4:-15554891 | None:intergenic |
AATATCAGCACAAGAGACAG+TGG | 0.665482 | 2.4:-15553669 | None:intergenic |
GTAGAATTAGTCCTCTCACA+GGG | 0.677991 | 2.4:+15555223 | MS.gene94572:CDS |
TCCTCTCACAGGGACTAATG+GGG | 0.683490 | 2.4:+15555233 | MS.gene94572:CDS |
ACTGGAGAGACAGAATCAAG+AGG | 0.693800 | 2.4:-15555033 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAATTAAATTTAACATATTA+AGG | - | chr2.4:15554403-15554422 | None:intergenic | 10.0% |
!! | TTATGTTTAATTATAAAGAA+TGG | - | chr2.4:15553315-15553334 | None:intergenic | 10.0% |
!! | TTATTCTACATTAAATAAAA+TGG | + | chr2.4:15553212-15553231 | MS.gene94572:intron | 10.0% |
!!! | TTTTATATTCATTATTGTTA+TGG | + | chr2.4:15554630-15554649 | MS.gene94572:intron | 10.0% |
!! | AAATATACATGTCTAATAAA+AGG | - | chr2.4:15553751-15553770 | None:intergenic | 15.0% |
!! | ATATAAATTAATTGAAACCA+TGG | - | chr2.4:15554711-15554730 | None:intergenic | 15.0% |
!! | TAAAAATAAAAACAGTTTAC+AGG | + | chr2.4:15553443-15553462 | MS.gene94572:intron | 15.0% |
!! | TTCAATTAATTTATATAGCT+TGG | + | chr2.4:15554715-15554734 | MS.gene94572:intron | 15.0% |
!! | TTGTTCTATTGTTAATTTAT+TGG | + | chr2.4:15553006-15553025 | MS.gene94572:intron | 15.0% |
!!! | ATTTCTTTGTTTATTTTGTA+GGG | + | chr2.4:15553512-15553531 | MS.gene94572:intron | 15.0% |
!!! | TATTTCTTTGTTTATTTTGT+AGG | + | chr2.4:15553511-15553530 | MS.gene94572:intron | 15.0% |
!! | AATTAATTTATATAGCTTGG+AGG | + | chr2.4:15554718-15554737 | MS.gene94572:intron | 20.0% |
!! | AATTAGACTATTTGATTATG+TGG | + | chr2.4:15553164-15553183 | MS.gene94572:intron | 20.0% |
!! | ACTAAAATGTTTCAAAACAA+AGG | + | chr2.4:15554844-15554863 | MS.gene94572:CDS | 20.0% |
!! | ATATAGTTAGGGAAATTTAT+AGG | - | chr2.4:15554527-15554546 | None:intergenic | 20.0% |
!! | ATCACTCATTATACTTAAAA+AGG | + | chr2.4:15554055-15554074 | MS.gene94572:intron | 20.0% |
!! | TATTATGTTTAGTTAGTAGT+TGG | + | chr2.4:15554193-15554212 | MS.gene94572:intron | 20.0% |
!! | TTTAACATATTAAGGGTTTA+TGG | - | chr2.4:15554395-15554414 | None:intergenic | 20.0% |
!! | TTTGTGACAAAAGAAATTAA+AGG | + | chr2.4:15553772-15553791 | MS.gene94572:intron | 20.0% |
!!! | AAATTTGATGACATATAGTT+AGG | - | chr2.4:15554539-15554558 | None:intergenic | 20.0% |
!!! | AATTTGATGACATATAGTTA+GGG | - | chr2.4:15554538-15554557 | None:intergenic | 20.0% |
!!! | TTTTCCTATCATATTGTTTA+TGG | + | chr2.4:15553899-15553918 | MS.gene94572:intron | 20.0% |
!!! | TTTTTCTCACATATAATTGA+GGG | + | chr2.4:15553967-15553986 | MS.gene94572:intron | 20.0% |
! | AAAAAGTTAAGAAGAGAAAG+TGG | - | chr2.4:15553952-15553971 | None:intergenic | 25.0% |
! | AATTAAGTGAATTGAGCTTT+AGG | + | chr2.4:15553125-15553144 | MS.gene94572:intron | 25.0% |
! | ATTGTAATCATACAATTCTC+TGG | + | chr2.4:15553845-15553864 | MS.gene94572:intron | 25.0% |
! | TCACTTAATTATGAAAACTG+TGG | - | chr2.4:15553115-15553134 | None:intergenic | 25.0% |
! | TCATGTTTCACATAGAAATA+AGG | - | chr2.4:15554497-15554516 | None:intergenic | 25.0% |
! | TTTCATTGTATATGCGATTT+CGG | - | chr2.4:15554939-15554958 | None:intergenic | 25.0% |
!! | CTTTTTCTCACATATAATTG+AGG | + | chr2.4:15553966-15553985 | MS.gene94572:intron | 25.0% |
!! | TTTTGACAACAACTACTATA+GGG | + | chr2.4:15555059-15555078 | MS.gene94572:CDS | 25.0% |
!!! | AGCTGGTCTTTTTAATTATT+TGG | - | chr2.4:15554339-15554358 | None:intergenic | 25.0% |
AGTCAACCTTATGTTTACTA+AGG | + | chr2.4:15554126-15554145 | MS.gene94572:intron | 30.0% | |
ATAATTAAAAAGACCAGCTC+TGG | + | chr2.4:15554340-15554359 | MS.gene94572:intron | 30.0% | |
CACATAATGAACTACTACAT+TGG | + | chr2.4:15553271-15553290 | MS.gene94572:intron | 30.0% | |
TAACTCTTGTCGTTGTATAT+GGG | + | chr2.4:15553999-15554018 | MS.gene94572:intron | 30.0% | |
TAATTAAAAAGACCAGCTCT+GGG | + | chr2.4:15554341-15554360 | MS.gene94572:intron | 30.0% | |
TAGTTGTTGTCAAAAGTAAC+TGG | - | chr2.4:15555054-15555073 | None:intergenic | 30.0% | |
TGAATCTCAATAATTCACCA+TGG | + | chr2.4:15554691-15554710 | MS.gene94572:intron | 30.0% | |
TGATGTCCTTAGTAAACATA+AGG | - | chr2.4:15554135-15554154 | None:intergenic | 30.0% | |
TTATCTCTCACATTCTAACT+AGG | + | chr2.4:15552953-15552972 | MS.gene94572:intron | 30.0% | |
TTCTCAAGTTTCTTTGGTTA+GGG | + | chr2.4:15555140-15555159 | MS.gene94572:CDS | 30.0% | |
! | ATTTTTGTCCATTATCTCAG+AGG | - | chr2.4:15552869-15552888 | None:intergenic | 30.0% |
! | CTTTTGACAACAACTACTAT+AGG | + | chr2.4:15555058-15555077 | MS.gene94572:CDS | 30.0% |
! | TTTTTGTCCATTATCTCAGA+GGG | - | chr2.4:15552868-15552887 | None:intergenic | 30.0% |
!! | ACTAGGCTCTATTTTTCATT+TGG | + | chr2.4:15552970-15552989 | MS.gene94572:intron | 30.0% |
!! | AGGACAATTTGCTTTTCTTA+AGG | - | chr2.4:15554986-15555005 | None:intergenic | 30.0% |
!! | ATGTGATGGATCAATCTTAT+TGG | + | chr2.4:15553535-15553554 | MS.gene94572:CDS | 30.0% |
!! | CTAGGCTCTATTTTTCATTT+GGG | + | chr2.4:15552971-15552990 | MS.gene94572:intron | 30.0% |
!! | TTGAAACATTTTAGTGAGTG+TGG | - | chr2.4:15554839-15554858 | None:intergenic | 30.0% |
!!! | TGAACTACTACATTGGTTTT+TGG | + | chr2.4:15553278-15553297 | MS.gene94572:intron | 30.0% |
!!! | TTTATTTTGTAGGGATGTGA+TGG | + | chr2.4:15553521-15553540 | MS.gene94572:intron | 30.0% |
AAAGCAAATTGTCCTCTTTC+TGG | + | chr2.4:15554991-15555010 | MS.gene94572:CDS | 35.0% | |
AACTCTTGTCGTTGTATATG+GGG | + | chr2.4:15554000-15554019 | MS.gene94572:intron | 35.0% | |
AAGTTAAGAAGAGAAAGTGG+CGG | - | chr2.4:15553949-15553968 | None:intergenic | 35.0% | |
ACCTAACAAAAACTCAGCTA+GGG | + | chr2.4:15553595-15553614 | MS.gene94572:CDS | 35.0% | |
AGGGATCTTGTTGCTAATAA+AGG | + | chr2.4:15555078-15555097 | MS.gene94572:CDS | 35.0% | |
ATCAATAATGAAGCCCGAAT+TGG | + | chr2.4:15552793-15552812 | MS.gene94572:CDS | 35.0% | |
CAACAAAAAATTCGAGAGCA+CGG | + | chr2.4:15554085-15554104 | MS.gene94572:intron | 35.0% | |
CGTGCCATAAACAATATGAT+AGG | - | chr2.4:15553906-15553925 | None:intergenic | 35.0% | |
CTAACTCTTGTCGTTGTATA+TGG | + | chr2.4:15553998-15554017 | MS.gene94572:intron | 35.0% | |
GGGAAATTAGAAAGAATTGC+AGG | + | chr2.4:15555253-15555272 | MS.gene94572:CDS | 35.0% | |
GTTAGGGCTTATAGTAGAAA+TGG | + | chr2.4:15555156-15555175 | MS.gene94572:CDS | 35.0% | |
GTTCTCAAGTTTCTTTGGTT+AGG | + | chr2.4:15555139-15555158 | MS.gene94572:CDS | 35.0% | |
TGCAAAGTTTGTGTCAATGT+TGG | - | chr2.4:15554962-15554981 | None:intergenic | 35.0% | |
! | GGCTTCATTATTGATAGCTT+TGG | - | chr2.4:15552788-15552807 | None:intergenic | 35.0% |
! | TCTGATCAAGCTCTTTTCAA+TGG | + | chr2.4:15555111-15555130 | MS.gene94572:CDS | 35.0% |
!! | AAGTATAGAAGCACCAATTC+GGG | - | chr2.4:15552809-15552828 | None:intergenic | 35.0% |
!! | ACATTTTAGTGAGTGTGGAT+AGG | - | chr2.4:15554834-15554853 | None:intergenic | 35.0% |
!! | GAAGTATAGAAGCACCAATT+CGG | - | chr2.4:15552810-15552829 | None:intergenic | 35.0% |
!! | TGTTGGTTCTCAAGTTTCTT+TGG | + | chr2.4:15555134-15555153 | MS.gene94572:CDS | 35.0% |
!!! | AGCTTCAACACTGGTTTTAA+TGG | - | chr2.4:15553639-15553658 | None:intergenic | 35.0% |
AACTAGAGATGGAATAGCAC+TGG | + | chr2.4:15553703-15553722 | MS.gene94572:CDS | 40.0% | |
AATATCAGCACAAGAGACAG+TGG | - | chr2.4:15553672-15553691 | None:intergenic | 40.0% | |
AGTAGAATTAGTCCTCTCAC+AGG | + | chr2.4:15555222-15555241 | MS.gene94572:CDS | 40.0% | |
CACCTAACAAAAACTCAGCT+AGG | + | chr2.4:15553594-15553613 | MS.gene94572:CDS | 40.0% | |
CCTAACAAAAACTCAGCTAG+GGG | + | chr2.4:15553596-15553615 | MS.gene94572:CDS | 40.0% | |
GTAGAATTAGTCCTCTCACA+GGG | + | chr2.4:15555223-15555242 | MS.gene94572:CDS | 40.0% | |
TTCTCTGGTCATTCTCAAGA+TGG | + | chr2.4:15553860-15553879 | MS.gene94572:intron | 40.0% | |
TTGACATTCTGCTTGTCCTA+TGG | - | chr2.4:15554911-15554930 | None:intergenic | 40.0% | |
TTTGCAAGAAGCTTCAACAC+TGG | - | chr2.4:15553648-15553667 | None:intergenic | 40.0% | |
! | AGCTGAGTTTTTGTTAGGTG+CGG | - | chr2.4:15553594-15553613 | None:intergenic | 40.0% |
! | ATTTTTCTCACCGGTAAAGG+TGG | - | chr2.4:15553570-15553589 | None:intergenic | 40.0% |
! | CAAGCTCTTTTCAATGGTGT+TGG | + | chr2.4:15555117-15555136 | MS.gene94572:CDS | 40.0% |
! | TTCTGGTGGTGACACAAATT+TGG | + | chr2.4:15555008-15555027 | MS.gene94572:CDS | 40.0% |
!! | AAGAGACTTTGCTGTTGCTA+TGG | + | chr2.4:15555191-15555210 | MS.gene94572:CDS | 40.0% |
!! | TGTAAGTCCCTCTGAGATAA+TGG | + | chr2.4:15552858-15552877 | MS.gene94572:intron | 40.0% |
ACTGGAGAGACAGAATCAAG+AGG | - | chr2.4:15555036-15555055 | None:intergenic | 45.0% | |
AGAGACCTTACAGTCCTTTC+TGG | + | chr2.4:15554877-15554896 | MS.gene94572:CDS | 45.0% | |
ATAGGTCAGAAGCTGGTGAA+GGG | - | chr2.4:15554816-15554835 | None:intergenic | 45.0% | |
CTAGCACTTGCAACTAGAGA+TGG | + | chr2.4:15553692-15553711 | MS.gene94572:CDS | 45.0% | |
CTTGCATCTCTTCTTCCAAG+TGG | - | chr2.4:15554760-15554779 | None:intergenic | 45.0% | |
GATGACACTTCCACCTTTAC+CGG | + | chr2.4:15553557-15553576 | MS.gene94572:CDS | 45.0% | |
GCAAATTGTCCTCTTTCTGG+TGG | + | chr2.4:15554994-15555013 | MS.gene94572:CDS | 45.0% | |
TTTGATACTCAACCCAGAGC+TGG | - | chr2.4:15554356-15554375 | None:intergenic | 45.0% | |
TTTGTGTCACCACCAGAAAG+AGG | - | chr2.4:15555006-15555025 | None:intergenic | 45.0% | |
! | CCCCTAGCTGAGTTTTTGTT+AGG | - | chr2.4:15553599-15553618 | None:intergenic | 45.0% |
! | GCTCTGGGTTGAGTATCAAA+TGG | + | chr2.4:15554356-15554375 | MS.gene94572:intron | 45.0% |
! | GGCATTTTTCTCACCGGTAA+AGG | - | chr2.4:15553573-15553592 | None:intergenic | 45.0% |
!! | AATTAAATTTAACATATTAA+GGG | - | chr2.4:15554402-15554421 | None:intergenic | 5.0% |
!!! | TATATTTATCTTTTTTTTTA+AGG | - | chr2.4:15553370-15553389 | None:intergenic | 5.0% |
AGTCCTCTCACAGGGACTAA+TGG | + | chr2.4:15555231-15555250 | MS.gene94572:CDS | 50.0% | |
AGTGTGGATAGGTCAGAAGC+TGG | - | chr2.4:15554823-15554842 | None:intergenic | 50.0% | |
ATAGCTTGGAGGACCCTCAT+GGG | + | chr2.4:15554729-15554748 | MS.gene94572:intron | 50.0% | |
CAGAAGCTGGTGAAGGGATT+TGG | - | chr2.4:15554810-15554829 | None:intergenic | 50.0% | |
CCAAGTGGTACTACCCATGA+GGG | - | chr2.4:15554745-15554764 | None:intergenic | 50.0% | |
CTATGGTGTGTGCACCAGAA+AGG | - | chr2.4:15554894-15554913 | None:intergenic | 50.0% | |
GATAGGTCAGAAGCTGGTGA+AGG | - | chr2.4:15554817-15554836 | None:intergenic | 50.0% | |
GTCCTCTCACAGGGACTAAT+GGG | + | chr2.4:15555232-15555251 | MS.gene94572:CDS | 50.0% | |
GTGCACCAGAAAGGACTGTA+AGG | - | chr2.4:15554885-15554904 | None:intergenic | 50.0% | |
TATAGCTTGGAGGACCCTCA+TGG | + | chr2.4:15554728-15554747 | MS.gene94572:intron | 50.0% | |
TCCAAGTGGTACTACCCATG+AGG | - | chr2.4:15554746-15554765 | None:intergenic | 50.0% | |
TCCTCTCACAGGGACTAATG+GGG | + | chr2.4:15555233-15555252 | MS.gene94572:CDS | 50.0% | |
! | AGGTGCGGCATTTTTCTCAC+CGG | - | chr2.4:15553579-15553598 | None:intergenic | 50.0% |
! | CTTTCTGGTGCACACACCAT+AGG | + | chr2.4:15554892-15554911 | MS.gene94572:CDS | 50.0% |
!! | AGAAAGTGGCGGACATGGTT+TGG | - | chr2.4:15553938-15553957 | None:intergenic | 50.0% |
!! | AGAAGAGAAAGTGGCGGACA+TGG | - | chr2.4:15553943-15553962 | None:intergenic | 50.0% |
CCCTCATGGGTAGTACCACT+TGG | + | chr2.4:15554742-15554761 | MS.gene94572:CDS | 55.0% | |
TCCCCATTAGTCCCTGTGAG+AGG | - | chr2.4:15555237-15555256 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 15552781 | 15555287 | 15552781 | ID=MS.gene94572 |
chr2.4 | mRNA | 15552781 | 15555287 | 15552781 | ID=MS.gene94572.t1;Parent=MS.gene94572 |
chr2.4 | exon | 15552781 | 15552858 | 15552781 | ID=MS.gene94572.t1.exon1;Parent=MS.gene94572.t1 |
chr2.4 | CDS | 15552781 | 15552858 | 15552781 | ID=cds.MS.gene94572.t1;Parent=MS.gene94572.t1 |
chr2.4 | exon | 15553533 | 15553724 | 15553533 | ID=MS.gene94572.t1.exon2;Parent=MS.gene94572.t1 |
chr2.4 | CDS | 15553533 | 15553724 | 15553533 | ID=cds.MS.gene94572.t1;Parent=MS.gene94572.t1 |
chr2.4 | exon | 15554733 | 15555287 | 15554733 | ID=MS.gene94572.t1.exon3;Parent=MS.gene94572.t1 |
chr2.4 | CDS | 15554733 | 15555287 | 15554733 | ID=cds.MS.gene94572.t1;Parent=MS.gene94572.t1 |
Gene Sequence |
Protein sequence |