AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94963

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94963.t1 MTR_3g060220 93.827 162 10 0 1 162 195 356 7.90e-108 325
MS.gene94963.t1 MTR_3g060220 93.827 162 10 0 1 162 194 355 8.32e-108 325
MS.gene94963.t1 MTR_3g060240 88.889 162 18 0 1 162 195 356 1.65e-101 308
MS.gene94963.t1 MTR_3g060280 72.258 155 41 1 1 153 203 357 1.69e-81 249
MS.gene94963.t1 MTR_3g060280 72.258 155 41 1 1 153 203 357 4.66e-80 249
MS.gene94963.t1 MTR_3g060280 72.258 155 41 1 1 153 203 357 5.04e-80 249
MS.gene94963.t1 MTR_3g060280 72.258 155 41 1 1 153 203 357 4.20e-79 250
MS.gene94963.t1 MTR_3g030040 43.506 154 83 4 1 153 453 603 8.74e-36 132
MS.gene94963.t1 MTR_8g063270 43.506 154 82 4 1 153 182 331 1.21e-35 132
MS.gene94963.t1 MTR_8g037260 42.857 154 84 4 1 153 453 603 1.21e-35 132
MS.gene94963.t1 MTR_8g063270 43.506 154 82 4 1 153 387 536 2.16e-35 131
MS.gene94963.t1 MTR_8g086600 42.208 154 85 4 1 153 378 528 3.07e-34 128
MS.gene94963.t1 MTR_1g098550 42.484 153 84 4 1 152 469 618 3.60e-34 128
MS.gene94963.t1 MTR_1g098550 42.484 153 84 4 1 152 473 622 3.74e-34 128
MS.gene94963.t1 MTR_8g092590 42.484 153 84 4 1 152 471 620 4.76e-34 127
MS.gene94963.t1 MTR_3g107520 42.208 154 85 4 1 153 463 613 6.54e-34 127
MS.gene94963.t1 MTR_7g106680 42.208 154 85 3 1 153 411 561 2.40e-32 122
MS.gene94963.t1 MTR_2g016630 41.558 154 86 3 1 153 363 513 4.20e-32 122
MS.gene94963.t1 MTR_4g130510 38.961 154 90 4 1 153 433 583 8.41e-32 121
MS.gene94963.t1 MTR_2g087900 39.474 152 82 4 3 154 201 342 8.51e-32 118
MS.gene94963.t1 MTR_4g130510 38.961 154 90 4 1 153 433 583 1.03e-31 120
MS.gene94963.t1 MTR_4g130510 38.961 154 90 4 1 153 433 583 1.05e-31 120
MS.gene94963.t1 MTR_2g087900 38.272 162 89 5 3 163 201 352 5.93e-31 117
MS.gene94963.t1 MTR_2g035780 38.961 154 90 4 1 153 404 554 6.25e-31 119
MS.gene94963.t1 MTR_2g087900 38.272 162 89 5 3 163 201 352 7.25e-31 118
MS.gene94963.t1 MTR_2g087900 38.272 162 89 5 3 163 201 352 7.96e-31 118
MS.gene94963.t1 MTR_2g087960 35.669 157 82 3 2 153 200 342 9.24e-30 115
MS.gene94963.t1 MTR_2g087960 35.669 157 82 3 2 153 200 342 1.04e-29 114
MS.gene94963.t1 MTR_3g007770 40.260 154 88 3 1 153 420 570 1.07e-29 115
MS.gene94963.t1 MTR_1g069605 39.744 156 90 4 1 155 293 445 7.43e-29 112
MS.gene94963.t1 MTR_3g005560 54.651 86 39 0 67 152 233 318 1.82e-28 110
MS.gene94963.t1 MTR_4g050000 40.789 152 85 3 3 153 189 336 2.50e-28 111
MS.gene94963.t1 MTR_0011s0020 52.809 89 42 0 64 152 230 318 3.24e-28 110
MS.gene94963.t1 MTR_3g005560 54.651 86 39 0 67 152 233 318 4.16e-28 110
MS.gene94963.t1 MTR_3g005560 54.651 86 39 0 67 152 233 318 4.78e-28 110
MS.gene94963.t1 MTR_2g087980 35.526 152 86 4 2 153 193 332 5.95e-28 110
MS.gene94963.t1 MTR_2g037830 52.809 89 42 0 64 152 230 318 1.64e-27 108
MS.gene94963.t1 MTR_2g037830 52.809 89 42 0 64 152 230 318 1.85e-27 108
MS.gene94963.t1 MTR_2g087950 37.748 151 83 4 3 153 198 337 2.64e-27 108
MS.gene94963.t1 MTR_3g450800 50.562 89 44 0 64 152 181 269 2.87e-27 108
MS.gene94963.t1 MTR_4g088225 42.735 117 65 1 41 157 233 347 2.87e-27 108
MS.gene94963.t1 MTR_4g088225 42.735 117 65 1 41 157 233 347 3.40e-27 108
MS.gene94963.t1 MTR_5g029190 41.221 131 63 3 38 155 528 657 6.22e-27 107
MS.gene94963.t1 MTR_1g039445 39.855 138 67 4 33 155 512 648 1.33e-26 106
MS.gene94963.t1 MTR_1g073740 41.935 124 68 2 40 162 232 352 3.38e-26 105
MS.gene94963.t1 MTR_4g077910 41.985 131 62 3 38 155 549 678 8.15e-26 104
MS.gene94963.t1 MTR_4g130510 31.915 188 90 5 1 153 433 617 1.07e-25 103
MS.gene94963.t1 MTR_7g109200 38.994 159 73 6 18 155 546 701 1.07e-25 103
MS.gene94963.t1 MTR_1g039480 39.130 138 68 4 33 155 526 662 3.39e-25 102
MS.gene94963.t1 MTR_2g438220 39.231 130 66 3 38 155 437 565 9.24e-24 98.2
MS.gene94963.t1 MTR_7g116230 45.652 92 49 1 64 155 409 499 7.72e-22 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94963.t1 AT1G55850 54.601 163 69 2 1 162 206 364 1.71e-58 195
MS.gene94963.t1 AT4G23990 40.244 164 95 1 2 162 2 165 1.54e-36 133
MS.gene94963.t1 AT4G23990 40.606 165 93 2 2 162 216 379 2.91e-36 134
MS.gene94963.t1 AT4G24010 42.949 156 84 2 2 153 197 351 2.92e-36 134
MS.gene94963.t1 AT5G05170 43.506 154 83 4 1 153 441 591 8.14e-36 132
MS.gene94963.t1 AT4G24000 40.606 165 86 3 2 162 2 158 4.24e-35 129
MS.gene94963.t1 AT4G24000 40.606 165 86 3 2 162 194 350 5.97e-35 130
MS.gene94963.t1 AT4G39350 45.926 135 70 3 18 152 477 608 6.34e-34 127
MS.gene94963.t1 AT5G64740 47.407 135 68 3 18 152 476 607 7.18e-34 127
MS.gene94963.t1 AT5G09870 47.407 135 68 3 18 152 464 595 1.24e-33 126
MS.gene94963.t1 AT4G18780 42.208 154 85 3 1 153 366 516 2.21e-33 125
MS.gene94963.t1 AT4G32410 40.909 154 87 4 1 153 457 607 2.29e-33 125
MS.gene94963.t1 AT2G21770 45.926 135 70 3 18 152 482 613 8.50e-33 124
MS.gene94963.t1 AT5G17420 39.610 154 89 4 1 153 420 570 1.16e-32 124
MS.gene94963.t1 AT2G25540 40.909 154 87 3 1 153 437 587 1.63e-32 123
MS.gene94963.t1 AT5G44030 39.610 154 89 4 1 153 118 268 8.43e-32 121
MS.gene94963.t1 AT5G44030 39.610 154 89 4 1 153 397 547 1.08e-31 121
MS.gene94963.t1 AT5G44030 39.610 154 89 4 1 153 426 576 1.14e-31 120
MS.gene94963.t1 AT1G32180 42.857 133 62 3 34 153 385 516 2.53e-28 111
MS.gene94963.t1 AT1G32180 42.857 133 62 3 34 153 385 516 2.53e-28 111
MS.gene94963.t1 AT3G03050 37.725 167 83 5 7 155 518 681 1.45e-27 109
MS.gene94963.t1 AT1G02730 40.252 159 69 7 19 155 555 709 2.57e-26 105
MS.gene94963.t1 AT5G16910 38.312 154 78 5 18 155 532 684 5.23e-26 104
MS.gene94963.t1 AT4G38190 36.774 155 76 6 18 153 506 657 1.26e-25 103
MS.gene94963.t1 AT2G32620 39.456 147 71 5 1 141 195 329 2.13e-25 102
MS.gene94963.t1 AT2G32620 39.456 147 71 5 1 141 99 233 2.19e-25 102
MS.gene94963.t1 AT4G15320 40.458 131 65 3 22 151 236 354 2.23e-25 102
MS.gene94963.t1 AT4G15320 40.458 131 65 3 22 151 221 339 2.24e-25 102
MS.gene94963.t1 AT4G15320 40.458 131 65 3 22 151 221 339 2.32e-25 102
MS.gene94963.t1 AT2G32620 39.456 147 71 5 1 141 195 329 2.59e-25 102
MS.gene94963.t1 AT2G32620 39.456 147 71 5 1 141 195 329 2.63e-25 102
MS.gene94963.t1 AT4G15290 40.458 131 65 3 22 151 221 339 5.59e-25 101
MS.gene94963.t1 AT2G32530 38.028 142 80 4 1 141 195 329 7.45e-25 101
MS.gene94963.t1 AT2G33100 40.769 130 64 3 38 155 444 572 3.67e-24 99.4
MS.gene94963.t1 AT2G33100 40.769 130 64 3 38 155 444 572 3.67e-24 99.4
MS.gene94963.t1 AT2G32540 37.415 147 74 4 1 141 195 329 1.49e-23 97.8
MS.gene94963.t1 AT2G32610 36.735 147 75 4 1 141 196 330 1.21e-22 95.1

Find 45 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCCCACCTTGGTATATT+TGG 0.175535 3.1:-44773412 MS.gene94963:CDS
CTTTGAAGTTATGTTGAAAT+TGG 0.202850 3.1:+44773373 None:intergenic
CAAACAATTCTCAATCTCTA+AGG 0.258363 3.1:-44772771 MS.gene94963:CDS
TGCCTTTGTGCAGGCTCCTC+AGG 0.278611 3.1:-44772704 MS.gene94963:CDS
GGATGCACTTTGCTTCTTCA+TGG 0.325256 3.1:-44772749 MS.gene94963:CDS
TTTGAAGTTATGTTGAAATT+GGG 0.331599 3.1:+44773374 None:intergenic
CTTCTTCATGGATGAAGAAA+AGG 0.332640 3.1:-44772737 MS.gene94963:CDS
AAAGAGTACCAATGAATTCA+TGG 0.349547 3.1:+44773344 None:intergenic
TTAGGTGGGCCCATGTATAT+TGG 0.356630 3.1:-44772448 MS.gene94963:intron
CTACTCGACTTTCCATATCT+TGG 0.397111 3.1:+44773716 None:intergenic
CTTCGGTACTTTACCCAACT+TGG 0.400012 3.1:+44773684 None:intergenic
ATAGAGAATGTACCAAGATA+TGG 0.403522 3.1:-44773728 None:intergenic
GTGATCTATACAAGATTGAT+TGG 0.409206 3.1:-44772378 MS.gene94963:CDS
ATAGATACTGCTTCATAGAA+AGG 0.419423 3.1:-44773463 MS.gene94963:intron
TGATTTGAGTATGCCTCCTT+CGG 0.425383 3.1:+44773667 None:intergenic
TTTCAACATAACTTCAAAGC+TGG 0.441371 3.1:-44773369 MS.gene94963:CDS
ATCTCTACTGTGAAAGCAAC+CGG 0.449204 3.1:+44772423 None:intergenic
AACAAACCCATCTTCATCTC+TGG 0.467241 3.1:+44773434 None:intergenic
GCCTTTGTGCAGGCTCCTCA+GGG 0.487427 3.1:-44772703 MS.gene94963:CDS
GTAGAAAATGCATCCAAGTT+GGG 0.487538 3.1:-44773697 MS.gene94963:CDS
AGCTGGAGCCATGAATTCAT+TGG 0.491316 3.1:-44773352 MS.gene94963:intron
GGGCCCATGTATATTGGAAC+CGG 0.500078 3.1:-44772442 MS.gene94963:CDS
ACATGAAATTGCCTTTGTGC+AGG 0.505115 3.1:-44772713 MS.gene94963:CDS
TTGAAGTTATGTTGAAATTG+GGG 0.520777 3.1:+44773375 None:intergenic
TTCTTCATGGATGAAGAAAA+GGG 0.528326 3.1:-44772736 MS.gene94963:CDS
AGTAGAAAATGCATCCAAGT+TGG 0.534174 3.1:-44773698 MS.gene94963:CDS
TGTCATCAATGATTAGCAAT+GGG 0.542769 3.1:-44772828 MS.gene94963:CDS
ATTAACATATTTACCTCATG+AGG 0.548024 3.1:+44772631 None:intergenic
AAACAATTCTCAATCTCTAA+GGG 0.548566 3.1:-44772770 MS.gene94963:CDS
GCAACCGGTTCCAATATACA+TGG 0.550511 3.1:+44772438 None:intergenic
GACAATGCCAGAGATGAAGA+TGG 0.557521 3.1:-44773441 MS.gene94963:CDS
GTGTCATCAATGATTAGCAA+TGG 0.569343 3.1:-44772829 MS.gene94963:CDS
TGGGTTTGTTATGCCCACCT+TGG 0.587789 3.1:-44773421 MS.gene94963:CDS
CGAGCCAAATATACCAAGGT+GGG 0.599351 3.1:+44773408 None:intergenic
ACAATGCCAGAGATGAAGAT+GGG 0.604837 3.1:-44773440 MS.gene94963:CDS
CACAGTAGAGATGCACTATG+TGG 0.607148 3.1:-44772412 MS.gene94963:CDS
CAAGTTGGGTAAAGTACCGA+AGG 0.626161 3.1:-44773683 MS.gene94963:CDS
GTACTTGAAGAATTGTGTCA+TGG 0.641937 3.1:+44773602 None:intergenic
CTCACGAGCCAAATATACCA+AGG 0.657691 3.1:+44773404 None:intergenic
GTTGGGTAAAGTACCGAAGG+AGG 0.662441 3.1:-44773680 MS.gene94963:CDS
CAACCGGTTCCAATATACAT+GGG 0.683720 3.1:+44772439 None:intergenic
ACGAGCCAAATATACCAAGG+TGG 0.686997 3.1:+44773407 None:intergenic
GTGATATTGGCAATGCCCTG+AGG 0.690995 3.1:+44772688 None:intergenic
GCCCTGAGGAGCCTGCACAA+AGG 0.697500 3.1:+44772702 None:intergenic
GGAGGCATACTCAAATCACA+AGG 0.701115 3.1:-44773662 MS.gene94963:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATTAAAAAAAA+TGG - chr3.1:44773512-44773531 MS.gene94963:intron 0.0%
!!! ATTAATTTTTTTTCTTTTGA+AGG - chr3.1:44772901-44772920 MS.gene94963:intron 10.0%
!! AAATTCATATGATAATTAAG+TGG - chr3.1:44772589-44772608 MS.gene94963:intron 15.0%
!! AAATTCAATCAGAAAAGAAA+AGG + chr3.1:44772520-44772539 None:intergenic 20.0%
!! ATCACAAAAAATGACATATA+TGG - chr3.1:44773422-44773441 MS.gene94963:CDS 20.0%
!! ATGCATTCAAAAATTAAACT+TGG + chr3.1:44772862-44772881 None:intergenic 20.0%
!! TATGTGTATGTATTAATTGT+TGG - chr3.1:44772928-44772947 MS.gene94963:intron 20.0%
!! TGTAATTATGTATTAATCGT+TGG - chr3.1:44773222-44773241 MS.gene94963:intron 20.0%
!!! AAAAGATATTTTAATACGTG+AGG + chr3.1:44772543-44772562 None:intergenic 20.0%
!!! TATGTCATTTTTTGTGATAT+TGG + chr3.1:44773420-44773439 None:intergenic 20.0%
!!! TCGTGGATTTTAATTTAATT+AGG - chr3.1:44772835-44772854 MS.gene94963:CDS 20.0%
!!! TTTGAAGTTATGTTGAAATT+GGG + chr3.1:44772721-44772740 None:intergenic 20.0%
!!! TTTTTTTATCAAGAATTCAC+TGG - chr3.1:44772779-44772798 MS.gene94963:CDS 20.0%
! AAACAATTCTCAATCTCTAA+GGG - chr3.1:44773322-44773341 MS.gene94963:intron 25.0%
! ACAAAAAATGACATATATGG+TGG - chr3.1:44773425-44773444 MS.gene94963:CDS 25.0%
! ATTAACATATTTACCTCATG+AGG + chr3.1:44773464-44773483 None:intergenic 25.0%
! TAAAATCCACGATCAAATAT+AGG + chr3.1:44772827-44772846 None:intergenic 25.0%
! TAAACTTTGAACACATATGT+AGG - chr3.1:44773598-44773617 MS.gene94963:intron 25.0%
! TTGAAGTTATGTTGAAATTG+GGG + chr3.1:44772720-44772739 None:intergenic 25.0%
!!! CTTTGAAGTTATGTTGAAAT+TGG + chr3.1:44772722-44772741 None:intergenic 25.0%
ATAGATACTGCTTCATAGAA+AGG - chr3.1:44772629-44772648 MS.gene94963:intron 30.0%
CAAACAATTCTCAATCTCTA+AGG - chr3.1:44773321-44773340 MS.gene94963:intron 30.0%
GTGATCTATACAAGATTGAT+TGG - chr3.1:44773714-44773733 MS.gene94963:CDS 30.0%
GTTCAAAGTTTAGAAACAGT+TGG + chr3.1:44773590-44773609 None:intergenic 30.0%
TGTCATCAATGATTAGCAAT+GGG - chr3.1:44773264-44773283 MS.gene94963:intron 30.0%
TTCTTCATGGATGAAGAAAA+GGG - chr3.1:44773356-44773375 MS.gene94963:CDS 30.0%
TTTCAACATAACTTCAAAGC+TGG - chr3.1:44772723-44772742 MS.gene94963:CDS 30.0%
! ATCACAAGGAATTTTCTCAA+TGG - chr3.1:44772444-44772463 MS.gene94963:CDS 30.0%
! TCACAAGGAATTTTCTCAAT+GGG - chr3.1:44772445-44772464 MS.gene94963:CDS 30.0%
! TTATTTTCGTATACCTCATG+AGG - chr3.1:44773448-44773467 MS.gene94963:CDS 30.0%
!! AAAGAGTACCAATGAATTCA+TGG + chr3.1:44772751-44772770 None:intergenic 30.0%
!!! AGAATTTTTCAAGACACATG+TGG - chr3.1:44773019-44773038 MS.gene94963:intron 30.0%
AAGCGTGTCATATCAATGTA+AGG - chr3.1:44772965-44772984 MS.gene94963:intron 35.0%
ACTAAGCCTATATTTGATCG+TGG - chr3.1:44772818-44772837 MS.gene94963:CDS 35.0%
ACTTTGAACACATATGTAGG+TGG - chr3.1:44773601-44773620 MS.gene94963:intron 35.0%
AGTAGAAAATGCATCCAAGT+TGG - chr3.1:44772394-44772413 MS.gene94963:CDS 35.0%
CTTCTTCATGGATGAAGAAA+AGG - chr3.1:44773355-44773374 MS.gene94963:CDS 35.0%
GGCAAATAGTACATTGTGAT+TGG - chr3.1:44773106-44773125 MS.gene94963:intron 35.0%
GTACTATTTGCCACAATTCA+AGG + chr3.1:44773098-44773117 None:intergenic 35.0%
GTACTTGAAGAATTGTGTCA+TGG + chr3.1:44772493-44772512 None:intergenic 35.0%
GTAGAAAATGCATCCAAGTT+GGG - chr3.1:44772395-44772414 MS.gene94963:CDS 35.0%
GTGTCATCAATGATTAGCAA+TGG - chr3.1:44773263-44773282 MS.gene94963:intron 35.0%
TGGTGTAAGTAAGCTACTAT+TGG + chr3.1:44773570-44773589 None:intergenic 35.0%
! CACAAGGAATTTTCTCAATG+GGG - chr3.1:44772446-44772465 MS.gene94963:CDS 35.0%
! CATATGTAGGTGGATTTACA+TGG - chr3.1:44773611-44773630 MS.gene94963:CDS 35.0%
!! TTACATGGCTTTGATGGATT+AGG - chr3.1:44773626-44773645 MS.gene94963:CDS 35.0%
AACAAACCCATCTTCATCTC+TGG + chr3.1:44772661-44772680 None:intergenic 40.0%
ACAATGCCAGAGATGAAGAT+GGG - chr3.1:44772652-44772671 MS.gene94963:CDS 40.0%
ACATGAAATTGCCTTTGTGC+AGG - chr3.1:44773379-44773398 MS.gene94963:CDS 40.0%
ATCTCTACTGTGAAAGCAAC+CGG + chr3.1:44773672-44773691 None:intergenic 40.0%
ATGACACGCTTATCTGCATT+GGG + chr3.1:44772956-44772975 None:intergenic 40.0%
CTACTCGACTTTCCATATCT+TGG + chr3.1:44772379-44772398 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG + chr3.1:44773095-44773114 None:intergenic 40.0%
TATGACACGCTTATCTGCAT+TGG + chr3.1:44772957-44772976 None:intergenic 40.0%
TATGCCCACCTTGGTATATT+TGG - chr3.1:44772680-44772699 MS.gene94963:CDS 40.0%
TGATTTGAGTATGCCTCCTT+CGG + chr3.1:44772428-44772447 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr3.1:44773072-44773091 None:intergenic 40.0%
TTGGTCCTCAATGCAGATAA+GGG - chr3.1:44773241-44773260 MS.gene94963:intron 40.0%
! CAACCGGTTCCAATATACAT+GGG + chr3.1:44773656-44773675 None:intergenic 40.0%
!! ATGGCTTTGATGGATTAGGT+GGG - chr3.1:44773630-44773649 MS.gene94963:CDS 40.0%
!! GTGGATTTACATGGCTTTGA+TGG - chr3.1:44773620-44773639 MS.gene94963:CDS 40.0%
ACGAGCCAAATATACCAAGG+TGG + chr3.1:44772688-44772707 None:intergenic 45.0%
AGCTGGAGCCATGAATTCAT+TGG - chr3.1:44772740-44772759 MS.gene94963:CDS 45.0%
CACAGTAGAGATGCACTATG+TGG - chr3.1:44773680-44773699 MS.gene94963:CDS 45.0%
CGAGCCAAATATACCAAGGT+GGG + chr3.1:44772687-44772706 None:intergenic 45.0%
CTCACGAGCCAAATATACCA+AGG + chr3.1:44772691-44772710 None:intergenic 45.0%
CTTCGGTACTTTACCCAACT+TGG + chr3.1:44772411-44772430 None:intergenic 45.0%
GACAATGCCAGAGATGAAGA+TGG - chr3.1:44772651-44772670 MS.gene94963:CDS 45.0%
GGATGCACTTTGCTTCTTCA+TGG - chr3.1:44773343-44773362 MS.gene94963:intron 45.0%
GTTGGTCCTCAATGCAGATA+AGG - chr3.1:44773240-44773259 MS.gene94963:intron 45.0%
TGACACCCTTATCTGCATTG+AGG + chr3.1:44773249-44773268 None:intergenic 45.0%
TGACACGCTTATCTGCATTG+GGG + chr3.1:44772955-44772974 None:intergenic 45.0%
TTAGGTGGGCCCATGTATAT+TGG - chr3.1:44773644-44773663 MS.gene94963:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr3.1:44773078-44773097 None:intergenic 45.0%
! GCAACCGGTTCCAATATACA+TGG + chr3.1:44773657-44773676 None:intergenic 45.0%
! GGAGGCATACTCAAATCACA+AGG - chr3.1:44772430-44772449 MS.gene94963:CDS 45.0%
!! CAAGTTGGGTAAAGTACCGA+AGG - chr3.1:44772409-44772428 MS.gene94963:CDS 45.0%
!! CATGGCTTTGATGGATTAGG+TGG - chr3.1:44773629-44773648 MS.gene94963:CDS 45.0%
AGCCACACCTCCTTGAATTG+TGG - chr3.1:44773085-44773104 MS.gene94963:intron 50.0%
GGGCCCATGTATATTGGAAC+CGG - chr3.1:44773650-44773669 MS.gene94963:CDS 50.0%
GTGATATTGGCAATGCCCTG+AGG + chr3.1:44773407-44773426 None:intergenic 50.0%
TGCCACAATTCAAGGAGGTG+TGG + chr3.1:44773090-44773109 None:intergenic 50.0%
!! GTTGGGTAAAGTACCGAAGG+AGG - chr3.1:44772412-44772431 MS.gene94963:CDS 50.0%
!! TGGGTTTGTTATGCCCACCT+TGG - chr3.1:44772671-44772690 MS.gene94963:CDS 50.0%
GCCTTTGTGCAGGCTCCTCA+GGG - chr3.1:44773389-44773408 MS.gene94963:CDS 60.0%
TGCCTTTGTGCAGGCTCCTC+AGG - chr3.1:44773388-44773407 MS.gene94963:CDS 60.0%
GCCCTGAGGAGCCTGCACAA+AGG + chr3.1:44773393-44773412 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 44772368 44773746 44772368 ID=MS.gene94963
chr3.1 mRNA 44772368 44773746 44772368 ID=MS.gene94963.t1;Parent=MS.gene94963
chr3.1 exon 44773606 44773746 44773606 ID=MS.gene94963.t1.exon1;Parent=MS.gene94963.t1
chr3.1 CDS 44773606 44773746 44773606 ID=cds.MS.gene94963.t1;Parent=MS.gene94963.t1
chr3.1 exon 44773353 44773481 44773353 ID=MS.gene94963.t1.exon2;Parent=MS.gene94963.t1
chr3.1 CDS 44773353 44773481 44773353 ID=cds.MS.gene94963.t1;Parent=MS.gene94963.t1
chr3.1 exon 44772645 44772857 44772645 ID=MS.gene94963.t1.exon3;Parent=MS.gene94963.t1
chr3.1 CDS 44772645 44772857 44772645 ID=cds.MS.gene94963.t1;Parent=MS.gene94963.t1
chr3.1 exon 44772368 44772466 44772368 ID=MS.gene94963.t1.exon4;Parent=MS.gene94963.t1
chr3.1 CDS 44772368 44772466 44772368 ID=cds.MS.gene94963.t1;Parent=MS.gene94963.t1
Gene Sequence

>MS.gene94963

AGAATGTACCAAGATATGGAAAGTCGAGTAGAAAATGCATCCAAGTTGGGTAAAGTACCGAAGGAGGCATACTCAAATCACAAGGAATTTTCTCAATGGGGTTCATATTCATCAAGACGTGACCATGACACAATTCTTCAAGTACGTATCCTTTTCTTTTCTGATTGAATTTCCTCACGTATTAAAATATCTTTTCTGATTGTCGTTCATAGTATACTAATAAATTCATATGATAATTAAGTGGTTTGTATTAATTTGTTTATAGATACTGCTTCATAGAAAGGACAATGCCAGAGATGAAGATGGGTTTGTTATGCCCACCTTGGTATATTTGGCTCGTGAGAAAAGACCCCAATTTCAACATAACTTCAAAGCTGGAGCCATGAATTCATTGGTACTCTTTTTTCTTTTTTTTTTTATCAAGAATTCACTGGTACTCTATATTTATATACTAAGCCTATATTTGATCGTGGATTTTAATTTAATTAGGACCAAGTTTAATTTTTGAATGCATGTTTATTTAGTATATATGTATTAATTTTTTTTCTTTTGAAGGAAAGTATGTGTATGTATTAATTGTTGGTCCCCAATGCAGATAAGCGTGTCATATCAATGTAAGGAAAATGCTATTTATCTAGAAAAATAGCATCAAGAATTTTTCAAGACACATGTGGCAAGTTTTAATTGCATGATTTATTTGTCCACTTCCTATTTTTCAGCCACACCTCCTTGAATTGTGGCAAATAGTACATTGTGATTGGTTGCTCTTTATTCTTGAAGAATTCTTGATGTTTTTTTTCTAGATATATAGCATTGCTCATCAATGTAATTAGTTGTTTGTTGTTCAAAAAAAATGTAATTATGTATTAATCGTTGGTCCTCAATGCAGATAAGGGTGTCATCAATGATTAGCAATGGGAAAATAATTCTCAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTTTGCTTCTTCATGGATGAAGAAAAGGGACATGAAATTGCCTTTGTGCAGGCTCCTCAGGGCATTGCCAATATCACAAAAAATGACATATATGGTGGTTATTTTCGTATACCTCATGAGGTAAATATGTTAATAAAATTGAAGTTTATACAGTAAATATGTTAAAAAAAAATTAAAAAAAATGGCACTACGCTATATAGTAGCTTGCTGATTGACTCCAATAGTAGCTTACTTACACCAACTGTTTCTAAACTTTGAACACATATGTAGGTGGATTTACATGGCTTTGATGGATTAGGTGGGCCCATGTATATTGGAACCGGTTGCTTTCACAGTAGAGATGCACTATGTGGAAGAAAGTATAGTGATCTATACAAGATTGATTGGAAGAATGTAA
Protein sequence

>MS.gene94963.t1

RMYQDMESRVENASKLGKVPKEAYSNHKEFSQWGSYSSRRDHDTILQILLHRKDNARDEDGFVMPTLVYLAREKRPQFQHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSLRDALCFFMDEEKGHEIAFVQAPQGIANITKNDIYGGYFRIPHEVGPCILEPVAFTVEMHYVEESIVIYTRLIGRM