Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95218.t1 | KEH15888.1 | 78.5 | 279 | 25 | 1 | 1 | 244 | 18 | 296 | 9.20E-121 | 443 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95218.t1 | A0A072TG10 | 78.5 | 279 | 25 | 1 | 1 | 244 | 18 | 296 | 6.6e-121 | 443.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056167 | MS.gene95218 | 0.80944 | 1.89E-50 | -1.69E-46 |
| MS.gene060036 | MS.gene95218 | 0.823659 | 1.23E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95218.t1 | MTR_0462s0020 | 78.495 | 279 | 25 | 1 | 1 | 244 | 18 | 296 | 7.23e-161 | 447 |
| MS.gene95218.t1 | MTR_4g048180 | 64.730 | 241 | 58 | 2 | 1 | 241 | 58 | 271 | 2.46e-111 | 321 |
| MS.gene95218.t1 | MTR_2g092960 | 43.841 | 276 | 117 | 3 | 1 | 239 | 941 | 1215 | 1.74e-76 | 251 |
| MS.gene95218.t1 | MTR_8g017000 | 42.029 | 276 | 120 | 3 | 1 | 239 | 413 | 685 | 2.45e-70 | 228 |
| MS.gene95218.t1 | MTR_2g037270 | 41.071 | 280 | 125 | 3 | 1 | 243 | 413 | 689 | 1.02e-69 | 226 |
| MS.gene95218.t1 | MTR_3g011560 | 39.643 | 280 | 116 | 4 | 1 | 243 | 413 | 676 | 8.60e-64 | 211 |
| MS.gene95218.t1 | MTR_2g023630 | 33.032 | 221 | 112 | 3 | 23 | 242 | 134 | 319 | 7.17e-34 | 124 |
| MS.gene95218.t1 | MTR_5g077900 | 28.440 | 218 | 114 | 4 | 61 | 239 | 8 | 222 | 1.03e-24 | 98.2 |
| MS.gene95218.t1 | MTR_3g052060 | 89.130 | 46 | 5 | 0 | 199 | 244 | 1 | 46 | 3.41e-24 | 92.4 |
| MS.gene95218.t1 | MTR_7g046380 | 29.358 | 218 | 108 | 5 | 52 | 226 | 177 | 391 | 1.85e-23 | 97.8 |
| MS.gene95218.t1 | MTR_0002s1270 | 28.440 | 218 | 114 | 4 | 61 | 239 | 182 | 396 | 2.04e-23 | 97.8 |
| MS.gene95218.t1 | MTR_4g050295 | 42.857 | 91 | 48 | 2 | 1 | 90 | 151 | 238 | 4.21e-15 | 73.2 |
| MS.gene95218.t1 | MTR_6g006270 | 59.574 | 47 | 19 | 0 | 1 | 47 | 133 | 179 | 1.48e-11 | 62.4 |
| MS.gene95218.t1 | MTR_5g092250 | 37.179 | 78 | 49 | 0 | 82 | 159 | 46 | 123 | 2.31e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCACGATTCTACGAATA+TGG | 0.197476 | 3.2:-13799945 | MS.gene95218:CDS |
| ACGTTGTGCAAGTTTGATTT+TGG | 0.222744 | 3.2:-13798939 | MS.gene95218:CDS |
| CCTCCCAACAAGAGATATTA+TGG | 0.232167 | 3.2:-13799995 | MS.gene95218:CDS |
| CATAATTGAATGGTTGTCTT+TGG | 0.282703 | 3.2:+13799182 | None:intergenic |
| TCTGCGTCTAGTTTCTAATA+AGG | 0.282863 | 3.2:-13800952 | MS.gene95218:intron |
| TATTATTGTAGTGCTATAGA+AGG | 0.310711 | 3.2:-13799341 | MS.gene95218:intron |
| CATTACCGACTCATGGGATA+TGG | 0.375060 | 3.2:-13799110 | MS.gene95218:intron |
| TGTCACCTCATCTGTGGGCA+TGG | 0.403135 | 3.2:+13801022 | None:intergenic |
| CCCTCAACACTTTCATTCAA+TGG | 0.409637 | 3.2:-13800986 | MS.gene95218:CDS |
| GTCACCTCATCTGTGGGCAT+GGG | 0.412439 | 3.2:+13801023 | None:intergenic |
| CATTGAAAAGTTGATGTTAA+GGG | 0.416482 | 3.2:-13800073 | MS.gene95218:CDS |
| GTCATTTCATCATCACTAAA+CGG | 0.421712 | 3.2:+13798974 | None:intergenic |
| GCATTGAAAAGTTGATGTTA+AGG | 0.433322 | 3.2:-13800074 | MS.gene95218:CDS |
| AACTCCATAATATCTCTTGT+TGG | 0.458167 | 3.2:+13799991 | None:intergenic |
| GTTAAGCTCGAACATCTTTG+CGG | 0.461378 | 3.2:+13799681 | None:intergenic |
| ACTCCATAATATCTCTTGTT+GGG | 0.480185 | 3.2:+13799992 | None:intergenic |
| GAACGCCTCTGTACTCAGTT+GGG | 0.503135 | 3.2:-13799784 | MS.gene95218:CDS |
| ACCTTTGTCACCTCATCTGT+GGG | 0.504424 | 3.2:+13801017 | None:intergenic |
| ATTATTGTAGTGCTATAGAA+GGG | 0.515001 | 3.2:-13799340 | MS.gene95218:intron |
| TCATTCAAATCGAACTTCAC+AGG | 0.517008 | 3.2:+13800033 | None:intergenic |
| AAGATGATCTTCCATCCAAA+AGG | 0.520107 | 3.2:-13800116 | MS.gene95218:CDS |
| CCTCACGATTCTACGAATAT+GGG | 0.520232 | 3.2:-13799944 | MS.gene95218:CDS |
| GGAACGCCTCTGTACTCAGT+TGG | 0.520392 | 3.2:-13799785 | MS.gene95218:CDS |
| CAGCTGGCATTACCGACTCA+TGG | 0.524513 | 3.2:-13799117 | MS.gene95218:CDS |
| CCATTGAATGAAAGTGTTGA+GGG | 0.526005 | 3.2:+13800986 | None:intergenic |
| ATGCTGAACATTGTATCAGC+TGG | 0.529032 | 3.2:-13799133 | MS.gene95218:CDS |
| AACCTTTGTCACCTCATCTG+TGG | 0.529223 | 3.2:+13801016 | None:intergenic |
| CAAGTTAAGTGGTGTCAGAA+AGG | 0.536922 | 3.2:-13799312 | MS.gene95218:CDS |
| GAAGGGTATAACAAGTTAAG+TGG | 0.537359 | 3.2:-13799323 | MS.gene95218:CDS |
| ACTTTGGGAATCTCCCATGT+TGG | 0.537717 | 3.2:+13799281 | None:intergenic |
| AGCTGGCATTACCGACTCAT+GGG | 0.542371 | 3.2:-13799116 | MS.gene95218:CDS |
| TAGCCACACTCATAATTGAA+TGG | 0.544947 | 3.2:+13799172 | None:intergenic |
| TTGGGAAATAGTGATGTGTA+TGG | 0.552873 | 3.2:-13799766 | MS.gene95218:CDS |
| ACAGATGAGGTGACAAAGGT+TGG | 0.570661 | 3.2:-13801014 | MS.gene95218:CDS |
| GAAAGGCGAGAAAGCCAACA+TGG | 0.572276 | 3.2:-13799295 | MS.gene95218:CDS |
| GCCATTGAATGAAAGTGTTG+AGG | 0.582439 | 3.2:+13800985 | None:intergenic |
| AGTCCCCATGCCCACAGATG+AGG | 0.605255 | 3.2:-13801027 | None:intergenic |
| GCCCACAGATGAGGTGACAA+AGG | 0.615741 | 3.2:-13801018 | MS.gene95218:CDS |
| CAACCATTCAATTATGAGTG+TGG | 0.617184 | 3.2:-13799175 | MS.gene95218:CDS |
| CACGATTCTACGAATATGGG+TGG | 0.637016 | 3.2:-13799941 | MS.gene95218:CDS |
| CCATAATATCTCTTGTTGGG+AGG | 0.640804 | 3.2:+13799995 | None:intergenic |
| AAAGGCGAGAAAGCCAACAT+GGG | 0.664376 | 3.2:-13799294 | MS.gene95218:CDS |
| CCCATATTCGTAGAATCGTG+AGG | 0.675861 | 3.2:+13799944 | None:intergenic |
| ACACACCATATCCCATGAGT+CGG | 0.680653 | 3.2:+13799105 | None:intergenic |
| TATTTCCCAACTGAGTACAG+AGG | 0.744494 | 3.2:+13799779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTAACTTACTT+TGG | + | chr3.2:13800677-13800696 | None:intergenic | 10.0% |
| !!! | TATAATTTTTAACTTACTTT+GGG | + | chr3.2:13800676-13800695 | None:intergenic | 10.0% |
| !!! | TATTTTATCTTAAATTGTTT+AGG | - | chr3.2:13799782-13799801 | MS.gene95218:CDS | 10.0% |
| !! | AAGTTACTAATTCAATATTA+TGG | - | chr3.2:13799721-13799740 | MS.gene95218:CDS | 15.0% |
| !! | ACAAAAAAAAAAAAGTTACA+CGG | + | chr3.2:13799044-13799063 | None:intergenic | 15.0% |
| !!! | AAAAAAGATTTGTTAACTTT+AGG | + | chr3.2:13800377-13800396 | None:intergenic | 15.0% |
| !!! | AAAAAGATTTGTTAACTTTA+GGG | + | chr3.2:13800376-13800395 | None:intergenic | 15.0% |
| !!! | GAATTGTTTTCTAATATTTT+AGG | - | chr3.2:13800126-13800145 | MS.gene95218:CDS | 15.0% |
| !!! | GTTTCTTAATGTTTTTTTAA+AGG | - | chr3.2:13800880-13800899 | MS.gene95218:intron | 15.0% |
| !!! | TTTCTAATATTTTAGGTATA+TGG | - | chr3.2:13800133-13800152 | MS.gene95218:CDS | 15.0% |
| ! | AAAAAAAAGTTACACGGAAA+AGG | + | chr3.2:13799038-13799057 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAAATGATAG+AGG | - | chr3.2:13799086-13799105 | MS.gene95218:intron | 25.0% |
| ! | AGTTGTAATTGGTAAATACT+AGG | - | chr3.2:13799250-13799269 | MS.gene95218:intron | 25.0% |
| ! | ATTATTGTAGTGCTATAGAA+GGG | - | chr3.2:13800599-13800618 | MS.gene95218:intron | 25.0% |
| ! | ATTTCTGTGGTATATAAATG+TGG | - | chr3.2:13799151-13799170 | MS.gene95218:CDS | 25.0% |
| ! | CTTGTTTATTTAAGCAAAGA+TGG | - | chr3.2:13799649-13799668 | MS.gene95218:CDS | 25.0% |
| ! | GTAAATACTAGGTGATAAAA+GGG | - | chr3.2:13799261-13799280 | MS.gene95218:intron | 25.0% |
| ! | TAAATACTAGGTGATAAAAG+GGG | - | chr3.2:13799262-13799281 | MS.gene95218:intron | 25.0% |
| ! | TATTATTGTAGTGCTATAGA+AGG | - | chr3.2:13800598-13800617 | MS.gene95218:intron | 25.0% |
| ! | TCATCGAATTTCACATAAAA+TGG | + | chr3.2:13799609-13799628 | None:intergenic | 25.0% |
| ! | TGAAAAAATACAAACCCATA+AGG | + | chr3.2:13799581-13799600 | None:intergenic | 25.0% |
| ! | TTATTTAAGCAAAGATGGTT+AGG | - | chr3.2:13799654-13799673 | MS.gene95218:CDS | 25.0% |
| !! | ATTTGCACAAGATTTTTATC+TGG | + | chr3.2:13800488-13800507 | None:intergenic | 25.0% |
| !!! | AAAACGACATTTTGTTTTTC+TGG | + | chr3.2:13800443-13800462 | None:intergenic | 25.0% |
| !!! | CATTGAAAAGTTGATGTTAA+GGG | - | chr3.2:13799866-13799885 | MS.gene95218:intron | 25.0% |
| !!! | CTTCTTTTTTTCCAGATTTT+TGG | - | chr3.2:13800932-13800951 | MS.gene95218:intron | 25.0% |
| !!! | TCAAATACACTTACTTTTTC+AGG | + | chr3.2:13800307-13800326 | None:intergenic | 25.0% |
| !!! | TTTTGGGTTTTTCATGTATA+GGG | - | chr3.2:13799488-13799507 | MS.gene95218:intron | 25.0% |
| AACTCCATAATATCTCTTGT+TGG | + | chr3.2:13799951-13799970 | None:intergenic | 30.0% | |
| AATAGCTTGATTAATACGCA+TGG | - | chr3.2:13799221-13799240 | MS.gene95218:intron | 30.0% | |
| ACTCCATAATATCTCTTGTT+GGG | + | chr3.2:13799950-13799969 | None:intergenic | 30.0% | |
| CAATAATAAGCAATTGCCAA+TGG | + | chr3.2:13800418-13800437 | None:intergenic | 30.0% | |
| CATAATTGAATGGTTGTCTT+TGG | + | chr3.2:13800760-13800779 | None:intergenic | 30.0% | |
| GGTAAATACTAGGTGATAAA+AGG | - | chr3.2:13799260-13799279 | MS.gene95218:intron | 30.0% | |
| GTCATTTCATCATCACTAAA+CGG | + | chr3.2:13800968-13800987 | None:intergenic | 30.0% | |
| TACATGAAAAACCCAAAACT+AGG | + | chr3.2:13799486-13799505 | None:intergenic | 30.0% | |
| TGGTATATAAATGTGGTCTA+TGG | - | chr3.2:13799158-13799177 | MS.gene95218:CDS | 30.0% | |
| ! | GTTTTGTCTATGAATTTCTG+TGG | - | chr3.2:13799138-13799157 | MS.gene95218:CDS | 30.0% |
| ! | TAACATCAACTTTTCAATGC+AGG | + | chr3.2:13799865-13799884 | None:intergenic | 30.0% |
| ! | TTTTCAATGCAGGATTTTTC+AGG | + | chr3.2:13799855-13799874 | None:intergenic | 30.0% |
| ! | TTTTCCGTGTGAATGAAAAA+TGG | + | chr3.2:13800209-13800228 | None:intergenic | 30.0% |
| !! | GCATTGAAAAGTTGATGTTA+AGG | - | chr3.2:13799865-13799884 | MS.gene95218:intron | 30.0% |
| !! | TGATCCATTTTTCATTCACA+CGG | - | chr3.2:13800202-13800221 | MS.gene95218:intron | 30.0% |
| !! | TTGTTTTTCTGTTTCGGTTT+AGG | - | chr3.2:13799447-13799466 | MS.gene95218:intron | 30.0% |
| !!! | CAGGTTTTGTTTTTCTGTTT+CGG | - | chr3.2:13799441-13799460 | MS.gene95218:intron | 30.0% |
| !!! | CGTCTCATATTCTGTTTTTT+TGG | - | chr3.2:13799400-13799419 | MS.gene95218:intron | 30.0% |
| !!! | GCATATTCTGCTTGTTTTTT+TGG | - | chr3.2:13799375-13799394 | MS.gene95218:intron | 30.0% |
| !!! | GTTTTGGGTTTTTCATGTAT+AGG | - | chr3.2:13799487-13799506 | MS.gene95218:intron | 30.0% |
| !!! | TACACTTACTTTTTCAGGTA+AGG | + | chr3.2:13800302-13800321 | None:intergenic | 30.0% |
| AAGATGATCTTCCATCCAAA+AGG | - | chr3.2:13799823-13799842 | MS.gene95218:intron | 35.0% | |
| CAACCATTCAATTATGAGTG+TGG | - | chr3.2:13800764-13800783 | MS.gene95218:intron | 35.0% | |
| CATGGTTCATGAGTTGTAAT+TGG | - | chr3.2:13799239-13799258 | MS.gene95218:intron | 35.0% | |
| TAGCCACACTCATAATTGAA+TGG | + | chr3.2:13800770-13800789 | None:intergenic | 35.0% | |
| TCATTCAAATCGAACTTCAC+AGG | + | chr3.2:13799909-13799928 | None:intergenic | 35.0% | |
| TTGGGAAATAGTGATGTGTA+TGG | - | chr3.2:13800173-13800192 | MS.gene95218:intron | 35.0% | |
| TTTCTGTTTCGGTTTAGGAA+GGG | - | chr3.2:13799452-13799471 | MS.gene95218:intron | 35.0% | |
| ! | ACATACAGAGGCATAACTAA+GGG | + | chr3.2:13800040-13800059 | None:intergenic | 35.0% |
| ! | GAAGGGTATAACAAGTTAAG+TGG | - | chr3.2:13800616-13800635 | MS.gene95218:intron | 35.0% |
| ! | TCTGCGTCTAGTTTCTAATA+AGG | - | chr3.2:13798987-13799006 | MS.gene95218:CDS | 35.0% |
| ! | TTTTCTGTTTCGGTTTAGGA+AGG | - | chr3.2:13799451-13799470 | MS.gene95218:intron | 35.0% |
| !! | ACGTTGTGCAAGTTTGATTT+TGG | - | chr3.2:13801000-13801019 | MS.gene95218:CDS | 35.0% |
| !! | CCATTGAATGAAAGTGTTGA+GGG | + | chr3.2:13798956-13798975 | None:intergenic | 35.0% |
| !! | CTACTTTAAAGCACATACAG+AGG | + | chr3.2:13800052-13800071 | None:intergenic | 35.0% |
| !! | TTTTGTCTTCTTAGGTACTG+CGG | - | chr3.2:13799187-13799206 | MS.gene95218:CDS | 35.0% |
| !!! | TTCTGTTTTTTTGGATCTGC+TGG | - | chr3.2:13799409-13799428 | MS.gene95218:intron | 35.0% |
| !!! | TTTTTCAGGTTCTGACCTTT+TGG | + | chr3.2:13799841-13799860 | None:intergenic | 35.0% |
| ACTAGGTGATAAAAGGGGAA+GGG | - | chr3.2:13799267-13799286 | MS.gene95218:intron | 40.0% | |
| AGTTAGTGTGTGGTGATCTA+GGG | - | chr3.2:13799322-13799341 | MS.gene95218:CDS | 40.0% | |
| ATAAATGTGGTCTATGGCTG+TGG | - | chr3.2:13799164-13799183 | MS.gene95218:CDS | 40.0% | |
| ATGCTGAACATTGTATCAGC+TGG | - | chr3.2:13800806-13800825 | MS.gene95218:intron | 40.0% | |
| CCATAATATCTCTTGTTGGG+AGG | + | chr3.2:13799947-13799966 | None:intergenic | 40.0% | |
| CCCTCAACACTTTCATTCAA+TGG | - | chr3.2:13798953-13798972 | MS.gene95218:CDS | 40.0% | |
| CCTCACGATTCTACGAATAT+GGG | - | chr3.2:13799995-13800014 | MS.gene95218:CDS | 40.0% | |
| CCTCCCAACAAGAGATATTA+TGG | - | chr3.2:13799944-13799963 | MS.gene95218:CDS | 40.0% | |
| CGGTACAATTGTATTGTCAC+TGG | - | chr3.2:13799353-13799372 | MS.gene95218:intron | 40.0% | |
| GAGAATGCATAGTTAGTGTG+TGG | - | chr3.2:13799312-13799331 | MS.gene95218:CDS | 40.0% | |
| GAGTTTCGTCTCCAAAAATC+TGG | + | chr3.2:13800946-13800965 | None:intergenic | 40.0% | |
| GTTAAGCTCGAACATCTTTG+CGG | + | chr3.2:13800261-13800280 | None:intergenic | 40.0% | |
| TACTAGGTGATAAAAGGGGA+AGG | - | chr3.2:13799266-13799285 | MS.gene95218:intron | 40.0% | |
| TAGTTAGTGTGTGGTGATCT+AGG | - | chr3.2:13799321-13799340 | MS.gene95218:CDS | 40.0% | |
| TATTTCCCAACTGAGTACAG+AGG | + | chr3.2:13800163-13800182 | None:intergenic | 40.0% | |
| ! | ACTAGACGCAGAAGTCTTTT+TGG | + | chr3.2:13798979-13798998 | None:intergenic | 40.0% |
| ! | CAAGTTAAGTGGTGTCAGAA+AGG | - | chr3.2:13800627-13800646 | MS.gene95218:intron | 40.0% |
| ! | CACATACAGAGGCATAACTA+AGG | + | chr3.2:13800041-13800060 | None:intergenic | 40.0% |
| ! | TTTTCCTATGTTCGATGGGT+TGG | - | chr3.2:13800459-13800478 | MS.gene95218:intron | 40.0% |
| !! | GCCATTGAATGAAAGTGTTG+AGG | + | chr3.2:13798957-13798976 | None:intergenic | 40.0% |
| !! | GTCGTTTTCCTATGTTCGAT+GGG | - | chr3.2:13800455-13800474 | MS.gene95218:intron | 40.0% |
| !! | TTTTTATGGCAGTGGCCTTA+TGG | - | chr3.2:13799563-13799582 | MS.gene95218:intron | 40.0% |
| !!! | TGTCGTTTTCCTATGTTCGA+TGG | - | chr3.2:13800454-13800473 | MS.gene95218:intron | 40.0% |
| !!! | TTTTATGGCAGTGGCCTTAT+GGG | - | chr3.2:13799564-13799583 | MS.gene95218:intron | 40.0% |
| AAAAAACCAGCAGGCACACA+AGG | + | chr3.2:13799548-13799567 | None:intergenic | 45.0% | |
| AAAGGCGAGAAAGCCAACAT+GGG | - | chr3.2:13800645-13800664 | MS.gene95218:intron | 45.0% | |
| AACCTTTGTCACCTCATCTG+TGG | + | chr3.2:13798926-13798945 | None:intergenic | 45.0% | |
| ACACACCATATCCCATGAGT+CGG | + | chr3.2:13800837-13800856 | None:intergenic | 45.0% | |
| ACAGATGAGGTGACAAAGGT+TGG | - | chr3.2:13798925-13798944 | MS.gene95218:CDS | 45.0% | |
| ACCTTTGTCACCTCATCTGT+GGG | + | chr3.2:13798925-13798944 | None:intergenic | 45.0% | |
| ACGGAAAAGGAGAAGTTCGA+GGG | + | chr3.2:13799025-13799044 | None:intergenic | 45.0% | |
| ATTGCCAATGGCGACTACAT+TGG | + | chr3.2:13800406-13800425 | None:intergenic | 45.0% | |
| CACGATTCTACGAATATGGG+TGG | - | chr3.2:13799998-13800017 | MS.gene95218:CDS | 45.0% | |
| CACTGCCATAAAAAACCAGC+AGG | + | chr3.2:13799557-13799576 | None:intergenic | 45.0% | |
| CCCATATTCGTAGAATCGTG+AGG | + | chr3.2:13799998-13800017 | None:intergenic | 45.0% | |
| CTTTCCAATGTAGTCGCCAT+TGG | - | chr3.2:13800399-13800418 | MS.gene95218:intron | 45.0% | |
| GCCTCACGATTCTACGAATA+TGG | - | chr3.2:13799994-13800013 | MS.gene95218:CDS | 45.0% | |
| ! | ACTTTGGGAATCTCCCATGT+TGG | + | chr3.2:13800661-13800680 | None:intergenic | 45.0% |
| ! | ATAAAAGGGGAAGGGTATGC+TGG | - | chr3.2:13799275-13799294 | MS.gene95218:intron | 45.0% |
| !! | CATTACCGACTCATGGGATA+TGG | - | chr3.2:13800829-13800848 | MS.gene95218:intron | 45.0% |
| !! | TCAGGTTCTGACCTTTTGGA+TGG | + | chr3.2:13799837-13799856 | None:intergenic | 45.0% |
| !!! | CTGCTGGTTTTTTATGGCAG+TGG | - | chr3.2:13799555-13799574 | MS.gene95218:intron | 45.0% |
| !!! | GGCTGTGGTTTTGTCTTCTT+AGG | - | chr3.2:13799179-13799198 | MS.gene95218:CDS | 45.0% |
| !!! | GTGTGCCTGCTGGTTTTTTA+TGG | - | chr3.2:13799549-13799568 | MS.gene95218:intron | 45.0% |
| AGCAAAACACGGCTACAGGA+AGG | + | chr3.2:13799515-13799534 | None:intergenic | 50.0% | |
| CACGGAAAAGGAGAAGTTCG+AGG | + | chr3.2:13799026-13799045 | None:intergenic | 50.0% | |
| GAAAGGCGAGAAAGCCAACA+TGG | - | chr3.2:13800644-13800663 | MS.gene95218:intron | 50.0% | |
| GAACGCCTCTGTACTCAGTT+GGG | - | chr3.2:13800155-13800174 | MS.gene95218:intron | 50.0% | |
| GCCAAAGCAGGAGCAAAACA+CGG | + | chr3.2:13799526-13799545 | None:intergenic | 50.0% | |
| GCTTCCAACCCATCGAACAT+AGG | + | chr3.2:13800466-13800485 | None:intergenic | 50.0% | |
| GGTGATCTAGGGATGTGATG+CGG | - | chr3.2:13799333-13799352 | MS.gene95218:CDS | 50.0% | |
| TCGGTTTAGGAAGGGTCTGT+TGG | - | chr3.2:13799460-13799479 | MS.gene95218:intron | 50.0% | |
| ! | GATCTGCTGGTTGTTTGTGC+AGG | - | chr3.2:13799422-13799441 | MS.gene95218:intron | 50.0% |
| ! | GGTATGCTGGCTGTTCTAAG+AGG | - | chr3.2:13799288-13799307 | MS.gene95218:CDS | 50.0% |
| !! | AGCTGGCATTACCGACTCAT+GGG | - | chr3.2:13800823-13800842 | MS.gene95218:intron | 50.0% |
| !! | AGGGTCTGTTGGCCTAGTTT+TGG | - | chr3.2:13799471-13799490 | MS.gene95218:intron | 50.0% |
| !! | GGGTCTGTTGGCCTAGTTTT+GGG | - | chr3.2:13799472-13799491 | MS.gene95218:intron | 50.0% |
| CAGGAGCAAAACACGGCTAC+AGG | + | chr3.2:13799519-13799538 | None:intergenic | 55.0% | |
| GCCCACAGATGAGGTGACAA+AGG | - | chr3.2:13798921-13798940 | MS.gene95218:CDS | 55.0% | |
| GGAACGCCTCTGTACTCAGT+TGG | - | chr3.2:13800154-13800173 | MS.gene95218:intron | 55.0% | |
| ! | GCCGTGTTTTGCTCCTGCTT+TGG | - | chr3.2:13799522-13799541 | MS.gene95218:intron | 55.0% |
| !! | CAGCTGGCATTACCGACTCA+TGG | - | chr3.2:13800822-13800841 | MS.gene95218:intron | 55.0% |
| CAGGCACACAAGGCCAAAGC+AGG | + | chr3.2:13799538-13799557 | None:intergenic | 60.0% | |
| !! | CTTTGGCCTTGTGTGCCTGC+TGG | - | chr3.2:13799539-13799558 | MS.gene95218:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 13798919 | 13801042 | 13798919 | ID=MS.gene95218 |
| chr3.2 | mRNA | 13798919 | 13801042 | 13798919 | ID=MS.gene95218.t1;Parent=MS.gene95218 |
| chr3.2 | exon | 13800953 | 13801042 | 13800953 | ID=MS.gene95218.t1.exon1;Parent=MS.gene95218.t1 |
| chr3.2 | CDS | 13800953 | 13801042 | 13800953 | ID=cds.MS.gene95218.t1;Parent=MS.gene95218.t1 |
| chr3.2 | exon | 13799940 | 13800157 | 13799940 | ID=MS.gene95218.t1.exon2;Parent=MS.gene95218.t1 |
| chr3.2 | CDS | 13799940 | 13800157 | 13799940 | ID=cds.MS.gene95218.t1;Parent=MS.gene95218.t1 |
| chr3.2 | exon | 13799649 | 13799813 | 13799649 | ID=MS.gene95218.t1.exon3;Parent=MS.gene95218.t1 |
| chr3.2 | CDS | 13799649 | 13799813 | 13799649 | ID=cds.MS.gene95218.t1;Parent=MS.gene95218.t1 |
| chr3.2 | exon | 13799283 | 13799352 | 13799283 | ID=MS.gene95218.t1.exon4;Parent=MS.gene95218.t1 |
| chr3.2 | CDS | 13799283 | 13799352 | 13799283 | ID=cds.MS.gene95218.t1;Parent=MS.gene95218.t1 |
| chr3.2 | exon | 13799111 | 13799206 | 13799111 | ID=MS.gene95218.t1.exon5;Parent=MS.gene95218.t1 |
| chr3.2 | CDS | 13799111 | 13799206 | 13799111 | ID=cds.MS.gene95218.t1;Parent=MS.gene95218.t1 |
| chr3.2 | exon | 13798919 | 13799014 | 13798919 | ID=MS.gene95218.t1.exon6;Parent=MS.gene95218.t1 |
| chr3.2 | CDS | 13798919 | 13799014 | 13798919 | ID=cds.MS.gene95218.t1;Parent=MS.gene95218.t1 |
| Gene Sequence |
| Protein sequence |
