AlfalfaGEDB | MS.gene95253

M. sativa cultivar XinJiangDaYe / MS.gene95253

KEGG: K10875
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26 PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95253.t1	XP_024628422.1	75.7	894	159	8	397	1251	19	893	0.00E+00	1285.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95253.t1	Q9SIW2	51.1	880	360	12	417	1251	34	888	1.7e-243	844.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95253.t1	A0A396GNG9	75.7	894	159	8	397	1251	19	893	0.0e+00	1285.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene95253.t1	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056172	MS.gene95253	0.855353	6.68E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene057838	MS.gene95253	PPI
MS.gene70078	MS.gene95253	PPI
MS.gene95253	MS.gene70072	PPI
MS.gene95253	MS.gene70077	PPI
MS.gene95253	MS.gene057833	PPI
MS.gene95253	MS.gene057841	PPI
MS.gene95253	MS.gene49850	PPI
MS.gene95253	MS.gene037502	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95253.t1	MTR_8g037345	78.436	895	131	11	397	1250	19	892	0.0	1399
MS.gene95253.t1	MTR_2g437480	74.745	784	177	7	482	1251	266	1042	0.0	1193
MS.gene95253.t1	MTR_2g437480	55.556	135	59	1	397	530	13	147	3.00e-36	149
MS.gene95253.t1	MTR_7g450790	31.634	667	368	18	611	1210	744	1389	5.44e-87	311
MS.gene95253.t1	MTR_1g081750	32.754	690	372	23	596	1210	399	1071	4.36e-85	301
MS.gene95253.t1	MTR_7g029525	32.967	637	337	18	640	1210	662	1274	8.94e-85	303
MS.gene95253.t1	MTR_7g026650	31.457	693	389	19	597	1210	423	1108	1.45e-83	298
MS.gene95253.t1	MTR_3g071860	31.322	696	386	20	595	1210	539	1222	2.81e-83	298
MS.gene95253.t1	MTR_7g450820	32.193	643	341	20	640	1210	567	1186	5.58e-83	297
MS.gene95253.t1	MTR_5g083300	30.567	723	394	22	575	1210	595	1296	1.41e-81	293

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95253.t1	AT2G16390	53.082	876	349	15	417	1251	34	888	0.0	911
MS.gene95253.t1	AT2G16390	53.082	876	349	15	417	1251	37	891	0.0	910
MS.gene95253.t1	AT2G21450	52.006	698	300	7	576	1251	137	821	0.0	737
MS.gene95253.t1	AT2G21450	52.006	698	300	7	576	1251	39	723	0.0	737
MS.gene95253.t1	AT2G21450	52.006	698	300	7	576	1251	130	814	0.0	737
MS.gene95253.t1	AT1G05490	30.472	699	386	19	592	1210	675	1353	7.97e-85	304
MS.gene95253.t1	AT3G24340	30.822	730	388	21	549	1216	394	1068	9.69e-84	298
MS.gene95253.t1	AT3G42670	30.352	682	390	20	605	1210	538	1210	1.10e-74	272
MS.gene95253.t1	AT3G42670	30.352	682	390	20	605	1210	538	1210	1.10e-74	272
MS.gene95253.t1	AT3G42670	30.352	682	390	20	605	1210	538	1210	1.10e-74	272

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Find 243 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGAATAGGTGCTGC+AGG	0.547225	8.4:-60598561	None:intergenic
AAAGAAATCTTTGTGATTTC+AGG	0.158671	8.4:+60601671	MS.gene95253:CDS
AAAGAAGTCAATGATGATAA+TGG	0.370422	8.4:+60596749	MS.gene95253:CDS
AAAGATGGATGAATTTATAA+AGG	0.390193	8.4:+60601490	MS.gene95253:CDS
AAAGGACTTAGATGTCGGAG+AGG	0.697802	8.4:+60601508	MS.gene95253:CDS
AAAGTTCTTCACTATTACAG+AGG	0.579573	8.4:+60601266	MS.gene95253:CDS
AACATCCAAGATGATGACAC+GGG	0.663891	8.4:-60601813	None:intergenic
AACTGGCGGTGTTAAAACAG+TGG	0.693932	8.4:+60600799	MS.gene95253:CDS
AAGAAATGAGAATACTGAGA+TGG	0.600386	8.4:+60600968	MS.gene95253:CDS
AAGAGGCTTAGAGATGATAA+TGG	0.473457	8.4:+60596782	MS.gene95253:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTCTTCACTATTACAG+AGG	+	chr8.4:60601266-60601285	MS.gene95253:CDS	30.0%
AACCCGAAAAATGCAAATAT+TGG	+	chr8.4:60598350-60598369	MS.gene95253:CDS	30.0%
AAGAAATGAGAATACTGAGA+TGG	+	chr8.4:60600968-60600987	MS.gene95253:CDS	30.0%
AAGATGTAGGATTCATCATA+AGG	-	chr8.4:60597105-60597124	None:intergenic	30.0%
AAGATGTAGGATTCATCATA+GGG	-	chr8.4:60597105-60597124	None:intergenic	30.0%
AAGTTCAAAAAGTCTTCTGT+AGG	+	chr8.4:60601392-60601411	MS.gene95253:CDS	30.0%
ACAAGAGGAAGAAGATAATA+AGG	+	chr8.4:60599074-60599093	MS.gene95253:CDS	30.0%
ACCCGAAAAATGCAAATATT+GGG	+	chr8.4:60598351-60598370	MS.gene95253:CDS	30.0%
ACGTAAAAGCTGTGTATAAA+AGG	+	chr8.4:60602095-60602114	MS.gene95253:CDS	30.0%
ACTGTTTGTATCCTAAGAAA+AGG	-	chr8.4:60600842-60600861	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	60596716	60602209	60596716	ID=MS.gene95253
chr8.4	mRNA	60596716	60602209	60596716	ID=MS.gene95253.t1;Parent=MS.gene95253
chr8.4	exon	60596716	60597816	60596716	ID=MS.gene95253.t1.exon1;Parent=MS.gene95253.t1
chr8.4	CDS	60596716	60597816	60596716	ID=cds.MS.gene95253.t1;Parent=MS.gene95253.t1
chr8.4	exon	60597927	60598011	60597927	ID=MS.gene95253.t1.exon2;Parent=MS.gene95253.t1
chr8.4	CDS	60597927	60598011	60597927	ID=cds.MS.gene95253.t1;Parent=MS.gene95253.t1
chr8.4	exon	60598178	60598662	60598178	ID=MS.gene95253.t1.exon3;Parent=MS.gene95253.t1
chr8.4	CDS	60598178	60598662	60598178	ID=cds.MS.gene95253.t1;Parent=MS.gene95253.t1
chr8.4	exon	60598967	60599164	60598967	ID=MS.gene95253.t1.exon4;Parent=MS.gene95253.t1
chr8.4	CDS	60598967	60599164	60598967	ID=cds.MS.gene95253.t1;Parent=MS.gene95253.t1
chr8.4	exon	60599826	60599975	60599826	ID=MS.gene95253.t1.exon5;Parent=MS.gene95253.t1
chr8.4	CDS	60599826	60599975	60599826	ID=cds.MS.gene95253.t1;Parent=MS.gene95253.t1
chr8.4	exon	60600384	60602116	60600384	ID=MS.gene95253.t1.exon6;Parent=MS.gene95253.t1
chr8.4	CDS	60600384	60602116	60600384	ID=cds.MS.gene95253.t1;Parent=MS.gene95253.t1
chr8.4	exon	60602206	60602209	60602206	ID=MS.gene95253.t1.exon7;Parent=MS.gene95253.t1
chr8.4	CDS	60602206	60602209	60602206	ID=cds.MS.gene95253.t1;Parent=MS.gene95253.t1

Gene Sequence

>MS.gene95253

ATGAGTGATAGAAGGAAGCCTTTTATTGGAGGAAAAGAAGTCAATGATGATAATGGAAGTAGAACAAAGAGGCTTAGAGATGATAATGGCATTCCAAACCCATTGATTGGAAGCGAGAGCAATGAAGTAGAAGTCCTTTATGATAGAAGGACAAAAACTGTGAAATATAGCCCCATGATGAATCCTACATCTTCTTACACTCATGCAGATGCTATGAAATATAGCCCGATGATGAATCCTACATCTTCTTACACTCATGCAGATGATGTGAAATATAGCCCGATGATGAATCCTACATCTTCTTACACTCATGCAGATGCTCTGAAATATAGCCCTATGATGAATCATACATCTTCTTACACTCATGCAGTTGATGTGAAATATAGCCCTATGATGAATCCTACATCTTCTTACACTCATTCAGATGTTGTGAAATATAGCCCTATGATGAATCATACATCTTCTTACACTCATGCAGTTGATGTGAAATATAGCTCTATGATGAATCCTACATCTTCTTACACTCATTCAGATGCTGTGAAATATAGCCCTATGATGAATCCTACATCTTCTTACACTCATTCAGATGCTGTGAAATATAGCCTTATGATGAATCCTACATCTTCTTACACTCATGCAGATGATGTGAAATATAGCCCTATGATGAATCCTACATCTTACACTCATGCAGATGTTGTGAAATATAGCCCTATGATGAATCATACATCTTCTTACACTCATGCAGTTGATGTGAAATATAGCCCTATGATGAATCCTACATCTTACACTCATGCAGATGCTGCGAAATATAACCCTATGATGAATCCTGCATCTTCTTACACTCATGCAGATGTTTCGAAGACACAAACTGTGAAATATAGCCCTATGATGAATCCTGCATCTTCTTACACTCATGCAGATGCTGTGAAATATAGCCCTATGATGAATCCTACATCTTCTTTCACTCATGCAGAAACTGTGAAATATAGCCCTATGATGAATCCTACATCTTCTTACACTCATGCAGATGCTGTGAAATATAGCCCTATGATGAATCCTACATCTTCTTACACTCATGTAGATGTTTCGAAAACCTTTACGGTAAATAAAACCTTTACGGTAAATATGTTCCTCAATTATCCTTTTAAAATTTAAATTTATCTTAATTCTTACACTAATAGCTTTCATTTCTCTTTGTTGTTGTCTGCTAGAATTCTGTTGTAAAGAAGGAAGAGGAAATTCGTAATCTCATAACATCTGGTCAAGCTAAAGAATGGGGCTCCGATATGCGTCTGGGTAGCGTCCTTTTAAATTTATATATGCCTTCAGAATATTTTCTCATGTTATTTTACTTGTATTATGCATGCTGCTTAGGATGCATGCAAGATGCACTCGTTGAAGCACAAAATACCTTAATAAATTTCTGTGTTATGTAAATTTTAATTCATTCTATTTATTGCAGAAATTTCATCTGAGGAAGGATGTAAAGAACTTAAATTATCAAGTGATAGCTTGCCATATTCGGCAAATGCTTATGTTGTAGATTACAAAAATCCGCATGCAATCACAGATGTTATAAACCATGTAGAGAATGGACAATATGGTAGTGTGACAAAGGATATTGATGCCCTTATAACCCGAAAAATGCAAATATTGGGCCCTTACTTTGCTCAACATCCGAGTCTTATTAATAAATACTTGAAAGGGGTGACAGATCATGAAGAAACTCACCCTTTGGAAAATATAACAGTTACTGGTATGTCACATCAAAATGTCAAAAATTTTGATTTTGACAGAAGGCATATTCAGAAGGATGTTGCGGCACCAAAAAGAGAAAAGAATGTTCCTGCAGCACCTATTCCTGTTTTTCATCAATTTGTATTGCTGAAACCTATTTTTCATAGAGTTTTATTGCCGAAACGGGAGACTCCTGCAATAAAAATGATTGTAAGCTTTGCCCTGCGTTTCTTTATGGAACATATAATTTTTAAGCACATTGAATCATGTGTGTTTTTTATGCACATTCTCGCAATGATTACCGGAAAATGACTATTTTTGTTGTTGTTGTTGGTGTTGTTGTTGTTTTCCTAACATTCTTTCCTATTCTCTGTGCAACAATTATTTACAGGGCTATCAAGATGCTCCTAATTATGCTTACCCTGGAGAAAGTTCAGGTCTGAATCCTAAAATAAGTCTGCCTCCTACATATAGCACTAGGAAAGATAAAGGTGTATATGTTGGTTTACATGAGGAAGAAGATAATCATGTTGCTGCTGAAGATAACAGTGTTTATGGTCGTGTACAAGAGGAAGAGGATAACAAGGTTGATGCTGAAGATACATGTGTTTATACCGGTGTACAAGAGGAAGAAGATAATAAGGTTGATGTTGAAGATGACGGGCTAGAAGATATGTGGAGGGAGATGTCAATGGCAATAGAAACTTCTAAAGTATGGTTACATTATTTTGATTTCACTTTTCAGTTATAACAATCATCTATGTCAAGTAGATTCCCCCCTTTCACGTTTGGGTCAATTATTCATAATATTTCATTTCAGAAATGCTATTTGGACCCACAATGTTAACAACAATACGGGACACCAACATTTGTTGTCACTGTGCAGGTGACATGTACTGTTGTCAATATAGTGCGTCCAAATAGCATTCTTGTATTTTATTTGCATTACTTCCTTATGATTTATGACACTGTTTTATTTCCTTCTTTGATTGAGTTGTTACTAATTAACATGAATATCTATTGATTTATAAAGAAGACTAATTAACTTTGTTTATGCTCATTGAAAAAGGTCTGTCCATTTCTATCAACTGTATTTATGTATGTATATGTTGTGATCATACAGTAGTTAATGTTATGCTGGTTGTTCGCATGTTACTTGTAAAGCTTCTGTGAAATTTTGTTCTCTCCTCATGAAAATAACTTGTATGCATATCTTGAATTAGGAATTTAACTGCATTTGCATGTGCTTTTCTTTGCTTTTTTAATAATCTTCTCTATCATATTGATCGTTTTTGTTTAAACTTTGACTTTACTCTTTATAGTATCTCTCAAAGTTCTCTTGGATTAATTTAGTTTGATTGTTGTCCTACTAGGATGTTTCTGCAGATCCTCCACCTGAAGATGAGGAAGAAGATCCTGACTGTGATCATTCTTTCATTCTAAAAGACGATCTTGGATATGTTTGTCGTGTTTGTGGGGTTATTGACAAAGGAATCGAAACCATATTTGAGTTTCAATACAAGGTTAGACACTTGTCTCTGCAAGAATGCTTTTTTGGTCATAAAACTTGTAAGAACGTCGCAAATGCATGAGTTGAGTTTTAAAGTATCTGTCTTAAAATTAGATGCATAGGTTGAATGTTTCAACAAAGGCATAATAATATGAAGAGTGAAACAGTTAGAACTTAGAGATTTGATGTGCTACACCCTCCGTTGTGGGAAAATCAGGAACCTCTTACCAAACCAAAATAATATAATAGCACATCAGGACATATTATGGCATGGGTTCAATTGATTTGAAAAACAGTGCCTTCATATTTCTCATTATAAATGTTCTGGACTAACATTTAAGATTACTTGTAGTTGGGGCTAGAAAATGTGTAAAACTGATTTATAGTTATAGTTATTTATTACCGTATTATTTTGTTGAAGGTTAAAAGGAGCACCAGGACTTGTATGTCCGATTCATCGAAAGCCAAAGAAAAAGTGGATGCGTTTGGAGTGAAGATTGCTGAAGAAGATTTCTTGGTAACTGACATATCAGCCCATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAACTTTCTCGCCAGAAACTTGGCGGGGGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCGGGATCCGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTGATGCCCGACCTCTTGTGGTGCTTCCGAAGGGAATATTGTCAACTTGGAAAAAGGAGTTTCAAACATGGCAAGTGGAAGATATACCGCTCTATGACCTATACACTGTGAGGGCTGACAGTAGACCTCAGCAACTGGCGGTGTTAAAACAGTGGATGGATAACAAAAGTATCCTTTTCTTAGGATACAAACAGTTGGCTAACATTGTGTGTGATAAAAGTAATAACAATGCAACAATATCTTGCCAAGAGATATTGCTTAAGGTTCCCTCGCTTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACTGAGATGGTACAGTCCCTTGCCAAAATACAAACACCAAGGAAAGTTGTATTGTCTGGAACTCTTTATCAAAATCATGTTAGGGAGGTCTTCAATGTTCTAAATCTTGTTCGGCCAAAGTTCTTGAATATGGAGGCGTCTAAGCCTATTGTTCGGCGCATTCAGAGCAGGATCCATATGCCTGGTGTGAAACGCTTTGATGAATTGGTTGAGAATATATTACAGAAGGATCCAGATTTTAAAAGGAAAGTGGCTGTAATTCATGATTTGCGTGAGATGACCAGCAAAGTTCTTCACTATTACAGAGGAGATTTTCTTGATGAGCTTCCTGGCCTGGTAGATTTCACTGTGTTGCTGAAACTTACTCCGAGACAGAAGCACGAACTTAAGATAGTGAAGATGACACATATAAAGTTCAAAAAGTCTTCTGTAGGCAGTGCAGTGTATATGCACCCAAATTTGAAGCCCATTGCAGAAAATAATGATGAAAAATCCACATATGATCATATAAAGATGGATGAATTTATAAAGGACTTAGATGTCGGAGAGGGAGTTAAATCGAAATTCTTTCGCAATATGCTGAACCTATGTGAATCAGCTGGGGAGAAACTTCTGGTGTTCAGTCAATACCTATTGACTTTGAAATATTTGGAAAGGTTAGCCATGAAGTGGAAGGGTTGGAGTCTCGGAAAAGAAATCTTTGTGATTTCAGGAGAATCATCCGCTGAACAAAGAGAGTTTTCCATGGAGAAGTTTAACAATTCACCCGAGGCAAAAGTATTGTTTGGCTCAATCAGAGCATGTAGTGAGGGGATATCATTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATCTCAACCCATCTGTTACTCGTCAAGCTATTGGCCGTGCTTTTCGGCCAGGCCAGAAAAAGAAAGTCTTTGTGTATCGACTGATAGCGGCTGATTCTCCAGAAGAGGAAGATCACCGTACTTGTTTCAAGAAGGAATTAATCTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGAACGTGCATTTCAAGTGGAAACACTAGATGTGAAAGAATGCGGCGATCTGTTTCTCGAGAGCCCATTGTTAGGGGAAGACGTAAAAGCTGTGTATAAAAGGTTAGACCACTTTTACTTACCTTTTTGCATATCACACGAAAGTATGGCATTTATTTTGTCCTAATTCTTGTTTTATTTGTATTTTTCAGGTAA

Protein sequence

>MS.gene95253.t1

MSDRRKPFIGGKEVNDDNGSRTKRLRDDNGIPNPLIGSESNEVEVLYDRRTKTVKYSPMMNPTSSYTHADAMKYSPMMNPTSSYTHADDVKYSPMMNPTSSYTHADALKYSPMMNHTSSYTHAVDVKYSPMMNPTSSYTHSDVVKYSPMMNHTSSYTHAVDVKYSSMMNPTSSYTHSDAVKYSPMMNPTSSYTHSDAVKYSLMMNPTSSYTHADDVKYSPMMNPTSYTHADVVKYSPMMNHTSSYTHAVDVKYSPMMNPTSYTHADAAKYNPMMNPASSYTHADVSKTQTVKYSPMMNPASSYTHADAVKYSPMMNPTSSFTHAETVKYSPMMNPTSSYTHADAVKYSPMMNPTSSYTHVDVSKTFTNSVVKKEEEIRNLITSGQAKEWGSDMRLEISSEEGCKELKLSSDSLPYSANAYVVDYKNPHAITDVINHVENGQYGSVTKDIDALITRKMQILGPYFAQHPSLINKYLKGVTDHEETHPLENITVTGMSHQNVKNFDFDRRHIQKDVAAPKREKNVPAAPIPVFHQFVLLKPIFHRVLLPKRETPAIKMIEEDNHVAAEDNSVYGRVQEEEDNKVDAEDTCVYTGVQEEEDNKVDVEDDGLEDMWREMSMAIETSKDVSADPPPEDEEEDPDCDHSFILKDDLGYVCRVCGVIDKGIETIFEFQYKVKRSTRTCMSDSSKAKEKVDAFGVKIAEEDFLVTDISAHPRHANQMKPHQVEGFNFLARNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPDARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVRADSRPQQLAVLKQWMDNKSILFLGYKQLANIVCDKSNNNATISCQEILLKVPSLLILDEGHTPRNENTEMVQSLAKIQTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLNMEASKPIVRRIQSRIHMPGVKRFDELVENILQKDPDFKRKVAVIHDLREMTSKVLHYYRGDFLDELPGLVDFTVLLKLTPRQKHELKIVKMTHIKFKKSSVGSAVYMHPNLKPIAENNDEKSTYDHIKMDEFIKDLDVGEGVKSKFFRNMLNLCESAGEKLLVFSQYLLTLKYLERLAMKWKGWSLGKEIFVISGESSAEQREFSMEKFNNSPEAKVLFGSIRACSEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHRTCFKKELISKMWFEWNEYCGERAFQVETLDVKECGDLFLESPLLGEDVKAVYKR