Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95336.t1 | BBG98627.1 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 3.50E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95336.t1 | P10978 | 30.5 | 501 | 267 | 11 | 7 | 442 | 5 | 489 | 1.8e-52 | 208.4 |
| MS.gene95336.t1 | P10978 | 35.6 | 216 | 110 | 5 | 264 | 459 | 935 | 1141 | 1.0e-23 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95336.t1 | A0A4Y1R3K4 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 2.6e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058292 | MS.gene95336 | 0.803102 | 4.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95336.t1 | MTR_2g039140 | 40.217 | 184 | 77 | 2 | 1 | 183 | 120 | 271 | 4.39e-32 | 124 |
| MS.gene95336.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 1.19e-18 | 80.5 |
| MS.gene95336.t1 | MTR_1g027280 | 32.667 | 150 | 95 | 2 | 225 | 368 | 103 | 252 | 1.51e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95336.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 5.30e-30 | 113 |
Find 108 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAATTGAACTTAAT+TGG | 0.076810 | 1.3:+18023285 | None:intergenic |
| AATTCTTGAAGAATTCTTTA+TGG | 0.165694 | 1.3:+18022775 | None:intergenic |
| CCGTCTGAGGTGATTGTTCT+TGG | 0.171668 | 1.3:+18021653 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 1.3:+18023545 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 1.3:+18022912 | None:intergenic |
| TGACGCATTGATATGTTCTT+TGG | 0.284379 | 1.3:-18022853 | MS.gene95336:CDS |
| CAACGACGTGCTAACCGTTT+TGG | 0.291938 | 1.3:+18021696 | None:intergenic |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 1.3:-18021604 | MS.gene95336:CDS |
| ATTCTTGAAGAATTCTTTAT+GGG | 0.356648 | 1.3:+18022776 | None:intergenic |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 1.3:+18021601 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 1.3:+18022913 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 1.3:-18023631 | MS.gene95336:CDS |
| AATCTCTTGTGCCATAGATT+AGG | 0.388549 | 1.3:+18022441 | None:intergenic |
| GATACCAATTGAACTTAATT+GGG | 0.389115 | 1.3:+18023286 | None:intergenic |
| CAAATGAAAATCCTAATCTA+TGG | 0.391111 | 1.3:-18022452 | MS.gene95336:CDS |
| GTAAACTTTACCAAGGTTAC+CGG | 0.407938 | 1.3:+18022746 | None:intergenic |
| ACAACCCAATTAAGTTCAAT+TGG | 0.412295 | 1.3:-18023290 | MS.gene95336:CDS |
| ACAGTAGCACTCCAACTATC+TGG | 0.413891 | 1.3:+18023218 | None:intergenic |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 1.3:-18022721 | MS.gene95336:CDS |
| TGCTGAAGCATATGGAATCT+TGG | 0.418789 | 1.3:+18021609 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.424640 | 1.3:-18023229 | MS.gene95336:CDS |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 1.3:+18021550 | None:intergenic |
| CTCTGGTCTCTTACTCTAGC+AGG | 0.428476 | 1.3:+18021476 | None:intergenic |
| TTAAGTTGAATGGGTCTGTA+TGG | 0.429127 | 1.3:-18022674 | MS.gene95336:CDS |
| ATTTGACGATGTTCGTGATC+TGG | 0.433721 | 1.3:-18023156 | MS.gene95336:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 1.3:-18022715 | MS.gene95336:CDS |
| TGTAGCCTTCGTCAGCCAAC+TGG | 0.439978 | 1.3:+18022595 | None:intergenic |
| CGTCTGAGGTGATTGTTCTT+GGG | 0.440972 | 1.3:+18021654 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 1.3:-18023122 | MS.gene95336:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 1.3:-18022882 | MS.gene95336:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 1.3:-18022684 | MS.gene95336:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 1.3:-18022832 | MS.gene95336:CDS |
| CAGTCTTCCACGGTGATGAT+TGG | 0.449152 | 1.3:-18022569 | MS.gene95336:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 1.3:-18023638 | MS.gene95336:CDS |
| CACAGCTGTGAGTGGCTCCT+CGG | 0.454182 | 1.3:-18023195 | MS.gene95336:CDS |
| AATCTATGGCACAAGAGATT+AGG | 0.468903 | 1.3:-18022438 | MS.gene95336:CDS |
| ACAGCTGTGAGTGGCTCCTC+GGG | 0.470989 | 1.3:-18023194 | MS.gene95336:CDS |
| TTAGGCCATATGAGTGAAAA+GGG | 0.472747 | 1.3:-18022420 | MS.gene95336:CDS |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 1.3:+18023392 | None:intergenic |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 1.3:-18022683 | MS.gene95336:CDS |
| TTGTTGTAACTGCAATCAAA+TGG | 0.485950 | 1.3:+18022472 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 1.3:+18022724 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 1.3:-18022741 | MS.gene95336:CDS |
| ATTAGGCCATATGAGTGAAA+AGG | 0.493480 | 1.3:-18022421 | MS.gene95336:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 1.3:-18022714 | MS.gene95336:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 1.3:-18022833 | MS.gene95336:CDS |
| AATTATATCCCCGGTAACCT+TGG | 0.501940 | 1.3:-18022756 | MS.gene95336:CDS |
| TGAGGCGGTTGTTTACGCTT+CGG | 0.506448 | 1.3:-18023364 | MS.gene95336:CDS |
| GATGATTGGAAGATTTCAAA+AGG | 0.514140 | 1.3:-18022555 | MS.gene95336:CDS |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 1.3:-18022819 | MS.gene95336:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 1.3:-18021710 | MS.gene95336:CDS |
| GAGGTGATTGTTCTTGGGAT+AGG | 0.529200 | 1.3:+18021659 | None:intergenic |
| TATGAGTGAAAAGGGGATGA+AGG | 0.531430 | 1.3:-18022412 | MS.gene95336:intron |
| TTCGTCAGCCAACTGGCCTA+CGG | 0.532309 | 1.3:+18022602 | None:intergenic |
| CTTAATCTCCGTAGGCCAGT+TGG | 0.533019 | 1.3:-18022610 | MS.gene95336:CDS |
| CTTTGTATGCAATACTGAAG+AGG | 0.534584 | 1.3:+18023088 | None:intergenic |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 1.3:-18023552 | MS.gene95336:CDS |
| TGCGTCACCTCCTCCTGAGG+TGG | 0.540756 | 1.3:+18022869 | None:intergenic |
| TAAACTTTACCAAGGTTACC+GGG | 0.543499 | 1.3:+18022747 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 1.3:-18023123 | MS.gene95336:CDS |
| GGTACTCTTTACAAGACAGC+TGG | 0.550162 | 1.3:-18022501 | MS.gene95336:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 1.3:-18023382 | MS.gene95336:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 1.3:-18022708 | MS.gene95336:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 1.3:-18021551 | MS.gene95336:CDS |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 1.3:-18021550 | MS.gene95336:CDS |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 1.3:-18023438 | MS.gene95336:CDS |
| TAGCACTCCAACTATCTGGT+AGG | 0.558134 | 1.3:+18023222 | None:intergenic |
| TAAGTTGAATGGGTCTGTAT+GGG | 0.558149 | 1.3:-18022673 | MS.gene95336:CDS |
| TTTACGCTTCGGATGACAGA+AGG | 0.562705 | 1.3:-18023353 | MS.gene95336:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 1.3:-18023650 | MS.gene95336:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 1.3:-18022876 | MS.gene95336:CDS |
| GTCTGTACGAGGCCAGACAT+TGG | 0.576943 | 1.3:-18021562 | MS.gene95336:CDS |
| TGCTAACAACTCCCACTGCA+TGG | 0.579223 | 1.3:+18021539 | None:intergenic |
| TTCTTCAAGAATTATATCCC+CGG | 0.581954 | 1.3:-18022765 | MS.gene95336:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.586306 | 1.3:-18022844 | MS.gene95336:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 1.3:-18023342 | MS.gene95336:CDS |
| GCTACTGTCACAGCTGTGAG+TGG | 0.594785 | 1.3:-18023203 | MS.gene95336:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 1.3:-18023133 | MS.gene95336:CDS |
| AGCACTCCAACTATCTGGTA+GGG | 0.597976 | 1.3:+18023223 | None:intergenic |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 1.3:-18023379 | MS.gene95336:CDS |
| CCAAGAACAATCACCTCAGA+CGG | 0.601832 | 1.3:-18021653 | MS.gene95336:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 1.3:-18023515 | MS.gene95336:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.603643 | 1.3:-18021584 | MS.gene95336:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 1.3:-18022879 | MS.gene95336:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 1.3:-18023541 | MS.gene95336:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 1.3:-18023645 | MS.gene95336:CDS |
| GGCTACACAACAGTCTTCCA+CGG | 0.609498 | 1.3:-18022579 | MS.gene95336:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 1.3:+18023516 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 1.3:-18023672 | MS.gene95336:CDS |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 1.3:+18022739 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 1.3:-18023677 | None:intergenic |
| ATTCACCCAACTCTCTCCGT+CGG | 0.618585 | 1.3:+18023117 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 1.3:+18023436 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 1.3:-18022904 | MS.gene95336:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 1.3:-18023449 | MS.gene95336:CDS |
| CAATGCGTCACCTCCTCCTG+AGG | 0.628987 | 1.3:+18022866 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.629176 | 1.3:-18023270 | MS.gene95336:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.642335 | 1.3:-18021650 | MS.gene95336:CDS |
| ATAGCTCGCGGTAGAAAGAG+TGG | 0.649534 | 1.3:-18022522 | MS.gene95336:CDS |
| GTAGGCCAGTTGGCTGACGA+AGG | 0.651906 | 1.3:-18022600 | MS.gene95336:CDS |
| CAAAACGGTTAGCACGTCGT+TGG | 0.663704 | 1.3:-18021695 | MS.gene95336:CDS |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 1.3:-18022916 | MS.gene95336:CDS |
| AAATCTTCCAATCATCACCG+TGG | 0.678539 | 1.3:+18022562 | None:intergenic |
| TAGGCCATATGAGTGAAAAG+GGG | 0.691407 | 1.3:-18022419 | MS.gene95336:CDS |
| AAACTTTACCAAGGTTACCG+GGG | 0.698437 | 1.3:+18022748 | None:intergenic |
| TGTACGCAATGGTCTGTACG+AGG | 0.702527 | 1.3:-18021573 | MS.gene95336:CDS |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 1.3:+18023433 | None:intergenic |
| GGTGCAATGACGATAGCTCG+CGG | 0.741901 | 1.3:-18022534 | MS.gene95336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTGAAGAATTCTTTA+TGG | + | chr1.3:18022385-18022404 | None:intergenic | 20.0% |
| !! | ATTCTTGAAGAATTCTTTAT+GGG | + | chr1.3:18022384-18022403 | None:intergenic | 20.0% |
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr1.3:18022474-18022493 | MS.gene95336:CDS | 20.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr1.3:18022818-18022837 | MS.gene95336:CDS | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr1.3:18021775-18021794 | MS.gene95336:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr1.3:18022705-18022724 | MS.gene95336:CDS | 25.0% |
| ! | GATACCAATTGAACTTAATT+GGG | + | chr1.3:18021874-18021893 | None:intergenic | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr1.3:18022473-18022492 | MS.gene95336:CDS | 25.0% |
| ACAACCCAATTAAGTTCAAT+TGG | - | chr1.3:18021867-18021886 | MS.gene95336:intron | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr1.3:18021778-18021797 | MS.gene95336:intron | 30.0% | |
| CGATACCAATTGAACTTAAT+TGG | + | chr1.3:18021875-18021894 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr1.3:18022602-18022621 | MS.gene95336:CDS | 30.0% | |
| GTATTGCATACAAAGTAAAG+AGG | - | chr1.3:18022077-18022096 | MS.gene95336:intron | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr1.3:18021507-18021526 | MS.gene95336:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr1.3:18022436-18022455 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr1.3:18022436-18022455 | MS.gene95336:CDS | 30.0% | |
| TTCTTCAAGAATTATATCCC+CGG | - | chr1.3:18022392-18022411 | MS.gene95336:intron | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr1.3:18022688-18022707 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr1.3:18023433-18023452 | MS.gene95336:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr1.3:18021768-18021787 | None:intergenic | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr1.3:18023432-18023451 | MS.gene95336:CDS | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr1.3:18021605-18021624 | MS.gene95336:CDS | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr1.3:18022118-18022137 | MS.gene95336:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr1.3:18022416-18022435 | MS.gene95336:CDS | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr1.3:18022780-18022799 | MS.gene95336:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr1.3:18022719-18022738 | MS.gene95336:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr1.3:18022719-18022738 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr1.3:18021512-18021531 | MS.gene95336:CDS | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr1.3:18022539-18022558 | MS.gene95336:CDS | 35.0% | |
| ACTCAAAATCTATCGAGTGT+TGG | - | chr1.3:18022180-18022199 | MS.gene95336:intron | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr1.3:18022101-18022120 | MS.gene95336:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr1.3:18022851-18022870 | MS.gene95336:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr1.3:18023038-18023057 | MS.gene95336:intron | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr1.3:18023373-18023392 | MS.gene95336:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr1.3:18023201-18023220 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr1.3:18022761-18022780 | MS.gene95336:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr1.3:18022736-18022755 | MS.gene95336:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr1.3:18023553-18023572 | MS.gene95336:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr1.3:18022794-18022813 | None:intergenic | 35.0% | |
| CAGAAGAAGTGAAGAGAATA+TGG | - | chr1.3:18023066-18023085 | MS.gene95336:intron | 35.0% | |
| CTTTGTATGCAATACTGAAG+AGG | + | chr1.3:18022072-18022091 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr1.3:18022443-18022462 | MS.gene95336:CDS | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr1.3:18022219-18022238 | MS.gene95336:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr1.3:18023322-18023341 | MS.gene95336:CDS | 35.0% | |
| GTAAACTTTACCAAGGTTAC+CGG | + | chr1.3:18022414-18022433 | None:intergenic | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr1.3:18023315-18023334 | MS.gene95336:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+GGG | + | chr1.3:18022413-18022432 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr1.3:18022442-18022461 | MS.gene95336:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr1.3:18022737-18022756 | MS.gene95336:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr1.3:18022421-18022440 | None:intergenic | 35.0% | |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr1.3:18022153-18022172 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr1.3:18022533-18022552 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr1.3:18022534-18022553 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr1.3:18022484-18022503 | MS.gene95336:CDS | 35.0% |
| ! | TGACGCATTGATATGTTCTT+TGG | - | chr1.3:18022304-18022323 | MS.gene95336:intron | 35.0% |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr1.3:18023253-18023272 | MS.gene95336:CDS | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr1.3:18022483-18022502 | MS.gene95336:CDS | 35.0% |
| AAACTTTACCAAGGTTACCG+GGG | + | chr1.3:18022412-18022431 | None:intergenic | 40.0% | |
| AAATCTTCCAATCATCACCG+TGG | + | chr1.3:18022598-18022617 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr1.3:18023133-18023152 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr1.3:18021616-18021635 | MS.gene95336:CDS | 40.0% | |
| AATTATATCCCCGGTAACCT+TGG | - | chr1.3:18022401-18022420 | MS.gene95336:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr1.3:18022095-18022114 | MS.gene95336:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr1.3:18023094-18023113 | MS.gene95336:CDS | 40.0% | |
| ATTTGACGATGTTCGTGATC+TGG | - | chr1.3:18022001-18022020 | MS.gene95336:intron | 40.0% | |
| CTGAGAACTACGATGATTTC+TGG | + | chr1.3:18022159-18022178 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr1.3:18023559-18023578 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr1.3:18023197-18023216 | None:intergenic | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr1.3:18023525-18023544 | MS.gene95336:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr1.3:18022991-18023010 | MS.gene95336:intron | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr1.3:18023343-18023362 | MS.gene95336:CDS | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr1.3:18023150-18023169 | MS.gene95336:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr1.3:18022738-18022757 | MS.gene95336:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr1.3:18022745-18022764 | MS.gene95336:CDS | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr1.3:18023327-18023346 | MS.gene95336:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr1.3:18023029-18023048 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr1.3:18023551-18023570 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr1.3:18023573-18023592 | MS.gene95336:CDS | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+AGG | - | chr1.3:18022197-18022216 | MS.gene95336:intron | 40.0% | |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr1.3:18022538-18022557 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr1.3:18023052-18023071 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr1.3:18022313-18022332 | MS.gene95336:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr1.3:18022745-18022764 | None:intergenic | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr1.3:18021887-18021906 | MS.gene95336:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr1.3:18021982-18022001 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr1.3:18021615-18021634 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr1.3:18022188-18022207 | MS.gene95336:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr1.3:18021597-18021616 | None:intergenic | 40.0% |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr1.3:18021727-18021746 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr1.3:18022868-18022887 | MS.gene95336:CDS | 45.0% | |
| ACAGTAGCACTCCAACTATC+TGG | + | chr1.3:18021942-18021961 | None:intergenic | 45.0% | |
| AGCACTCCAACTATCTGGTA+GGG | + | chr1.3:18021937-18021956 | None:intergenic | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr1.3:18021644-18021663 | None:intergenic | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr1.3:18023504-18023523 | MS.gene95336:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr1.3:18021642-18021661 | MS.gene95336:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr1.3:18023154-18023173 | MS.gene95336:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr1.3:18022253-18022272 | MS.gene95336:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr1.3:18023501-18023520 | None:intergenic | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr1.3:18022656-18022675 | MS.gene95336:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr1.3:18023074-18023093 | MS.gene95336:intron | 45.0% | |
| TAGCACTCCAACTATCTGGT+AGG | + | chr1.3:18021938-18021957 | None:intergenic | 45.0% | |
| TCGAACCTTTCGTCAAACCA+CGG | + | chr1.3:18022898-18022917 | None:intergenic | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr1.3:18022247-18022266 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr1.3:18022449-18022468 | MS.gene95336:CDS | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr1.3:18021928-18021947 | MS.gene95336:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr1.3:18022248-18022267 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr1.3:18022024-18022043 | MS.gene95336:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr1.3:18022114-18022133 | None:intergenic | 45.0% | |
| TTTACGCTTCGGATGACAGA+AGG | - | chr1.3:18021804-18021823 | MS.gene95336:intron | 45.0% | |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr1.3:18023506-18023525 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr1.3:18023520-18023539 | None:intergenic | 45.0% |
| AAACCACGGCTCTCCTTCTT+TGG | + | chr1.3:18022884-18022903 | None:intergenic | 50.0% | |
| AACCACGGCTCTCCTTCTTT+GGG | + | chr1.3:18022883-18022902 | None:intergenic | 50.0% | |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr1.3:18021519-18021538 | MS.gene95336:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr1.3:18023183-18023202 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr1.3:18023507-18023526 | MS.gene95336:CDS | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr1.3:18022635-18022654 | MS.gene95336:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr1.3:18023113-18023132 | MS.gene95336:CDS | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr1.3:18022043-18022062 | None:intergenic | 50.0% | |
| CAAAACGGTTAGCACGTCGT+TGG | - | chr1.3:18023462-18023481 | MS.gene95336:CDS | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr1.3:18023447-18023466 | MS.gene95336:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr1.3:18022588-18022607 | MS.gene95336:CDS | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr1.3:18022547-18022566 | MS.gene95336:CDS | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr1.3:18022338-18022357 | MS.gene95336:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr1.3:18023013-18023032 | MS.gene95336:intron | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr1.3:18021708-18021727 | MS.gene95336:CDS | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr1.3:18022241-18022260 | MS.gene95336:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr1.3:18022325-18022344 | MS.gene95336:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr1.3:18022578-18022597 | MS.gene95336:CDS | 50.0% | |
| GGTTTGACGAAAGGTTCGAC+CGG | - | chr1.3:18022899-18022918 | MS.gene95336:CDS | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr1.3:18022107-18022126 | MS.gene95336:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr1.3:18022927-18022946 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr1.3:18023119-18023138 | MS.gene95336:CDS | 50.0% | |
| TGAGGCGGTTGTTTACGCTT+CGG | - | chr1.3:18021793-18021812 | MS.gene95336:intron | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr1.3:18023621-18023640 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr1.3:18022324-18022343 | MS.gene95336:intron | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr1.3:18023584-18023603 | MS.gene95336:CDS | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr1.3:18022967-18022986 | MS.gene95336:intron | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr1.3:18022278-18022297 | MS.gene95336:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr1.3:18023120-18023139 | None:intergenic | 50.0% |
| ! | CAACGACGTGCTAACCGTTT+TGG | + | chr1.3:18023464-18023483 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr1.3:18023507-18023526 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr1.3:18022275-18022294 | MS.gene95336:intron | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr1.3:18021719-18021738 | MS.gene95336:CDS | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr1.3:18021526-18021545 | MS.gene95336:CDS | 50.0% |
| ACCACGGCTCTCCTTCTTTG+GGG | + | chr1.3:18022882-18022901 | None:intergenic | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr1.3:18022034-18022053 | MS.gene95336:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr1.3:18021724-18021743 | None:intergenic | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr1.3:18023607-18023626 | MS.gene95336:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr1.3:18022939-18022958 | MS.gene95336:intron | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr1.3:18022942-18022961 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr1.3:18022942-18022961 | MS.gene95336:intron | 55.0% | |
| GAGAGCCGTGGTTTGACGAA+AGG | - | chr1.3:18022890-18022909 | MS.gene95336:CDS | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr1.3:18022035-18022054 | MS.gene95336:intron | 55.0% | |
| GCTACTGTCACAGCTGTGAG+TGG | - | chr1.3:18021954-18021973 | MS.gene95336:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr1.3:18022921-18022940 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr1.3:18022623-18022642 | MS.gene95336:CDS | 55.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr1.3:18023595-18023614 | MS.gene95336:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr1.3:18022565-18022584 | None:intergenic | 55.0% | |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr1.3:18021815-18021834 | MS.gene95336:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr1.3:18022558-18022577 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr1.3:18022950-18022969 | None:intergenic | 60.0% | |
| ACAGCTGTGAGTGGCTCCTC+GGG | - | chr1.3:18021963-18021982 | MS.gene95336:intron | 60.0% | |
| ACCCCAAAGAAGGAGAGCCG+TGG | - | chr1.3:18022878-18022897 | MS.gene95336:CDS | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr1.3:18022974-18022993 | None:intergenic | 60.0% | |
| CAATGCGTCACCTCCTCCTG+AGG | + | chr1.3:18022294-18022313 | None:intergenic | 60.0% | |
| CACAGCTGTGAGTGGCTCCT+CGG | - | chr1.3:18021962-18021981 | MS.gene95336:intron | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr1.3:18023610-18023629 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr1.3:18022945-18022964 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr1.3:18023606-18023625 | MS.gene95336:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr1.3:18022557-18022576 | MS.gene95336:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr1.3:18022281-18022300 | MS.gene95336:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr1.3:18022970-18022989 | MS.gene95336:intron | 60.0% | |
| TGCGTCACCTCCTCCTGAGG+TGG | + | chr1.3:18022291-18022310 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18021486 | 18023693 | 18021486 | ID=MS.gene95336 |
| chr1.3 | mRNA | 18021486 | 18023693 | 18021486 | ID=MS.gene95336.t1;Parent=MS.gene95336 |
| chr1.3 | exon | 18023089 | 18023693 | 18023089 | ID=MS.gene95336.t1.exon1;Parent=MS.gene95336.t1 |
| chr1.3 | CDS | 18023089 | 18023693 | 18023089 | ID=cds.MS.gene95336.t1;Parent=MS.gene95336.t1 |
| chr1.3 | exon | 18022413 | 18022938 | 18022413 | ID=MS.gene95336.t1.exon2;Parent=MS.gene95336.t1 |
| chr1.3 | CDS | 18022413 | 18022938 | 18022413 | ID=cds.MS.gene95336.t1;Parent=MS.gene95336.t1 |
| chr1.3 | exon | 18021486 | 18021773 | 18021486 | ID=MS.gene95336.t1.exon3;Parent=MS.gene95336.t1 |
| chr1.3 | CDS | 18021486 | 18021773 | 18021486 | ID=cds.MS.gene95336.t1;Parent=MS.gene95336.t1 |
| Gene Sequence |
| Protein sequence |
