Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96279.t1 | XP_003610508.1 | 84.1 | 308 | 36 | 4 | 1 | 298 | 1 | 305 | 4.30E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96279.t1 | G7JKH8 | 84.1 | 308 | 36 | 4 | 1 | 298 | 1 | 305 | 3.1e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057622 | MS.gene96279 | 0.809909 | 1.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96279.t1 | MTR_4g132970 | 86.688 | 308 | 28 | 4 | 1 | 298 | 1 | 305 | 2.25e-180 | 499 |
| MS.gene96279.t1 | MTR_4g132963 | 82.373 | 295 | 40 | 6 | 5 | 298 | 1 | 284 | 1.06e-171 | 476 |
| MS.gene96279.t1 | MTR_4g132940 | 82.373 | 295 | 40 | 6 | 5 | 298 | 1 | 284 | 1.06e-171 | 476 |
| MS.gene96279.t1 | MTR_2g025520 | 56.250 | 320 | 104 | 11 | 9 | 298 | 4 | 317 | 1.20e-110 | 323 |
| MS.gene96279.t1 | MTR_8g012240 | 37.238 | 239 | 130 | 7 | 34 | 258 | 34 | 266 | 7.08e-40 | 141 |
| MS.gene96279.t1 | MTR_1g041155 | 34.348 | 230 | 122 | 6 | 48 | 259 | 64 | 282 | 1.00e-35 | 132 |
| MS.gene96279.t1 | MTR_7g053310 | 34.335 | 233 | 130 | 7 | 48 | 272 | 43 | 260 | 1.42e-33 | 124 |
| MS.gene96279.t1 | MTR_1g070970 | 41.606 | 137 | 80 | 0 | 128 | 264 | 166 | 302 | 2.86e-33 | 125 |
| MS.gene96279.t1 | MTR_1g076500 | 41.667 | 132 | 71 | 1 | 124 | 249 | 163 | 294 | 1.00e-32 | 124 |
| MS.gene96279.t1 | MTR_5g008720 | 32.843 | 204 | 113 | 5 | 86 | 270 | 45 | 243 | 3.15e-32 | 120 |
| MS.gene96279.t1 | MTR_2g013780 | 35.465 | 172 | 90 | 2 | 106 | 256 | 104 | 275 | 5.45e-32 | 121 |
| MS.gene96279.t1 | MTR_7g095960 | 43.200 | 125 | 71 | 0 | 131 | 255 | 161 | 285 | 1.09e-31 | 121 |
| MS.gene96279.t1 | MTR_8g093440 | 33.149 | 181 | 112 | 2 | 92 | 265 | 46 | 224 | 2.39e-31 | 118 |
| MS.gene96279.t1 | MTR_8g093440 | 36.424 | 151 | 88 | 2 | 122 | 265 | 13 | 162 | 5.46e-31 | 115 |
| MS.gene96279.t1 | MTR_7g083080 | 34.146 | 246 | 141 | 9 | 26 | 256 | 23 | 262 | 6.49e-31 | 118 |
| MS.gene96279.t1 | MTR_4g088770 | 33.721 | 172 | 104 | 3 | 106 | 269 | 123 | 292 | 2.38e-30 | 117 |
| MS.gene96279.t1 | MTR_4g088760 | 36.129 | 155 | 90 | 3 | 122 | 269 | 193 | 345 | 3.60e-30 | 117 |
| MS.gene96279.t1 | MTR_4g078310 | 32.584 | 178 | 103 | 4 | 86 | 247 | 67 | 243 | 7.24e-29 | 112 |
| MS.gene96279.t1 | MTR_2g013880 | 28.017 | 232 | 138 | 4 | 47 | 253 | 45 | 272 | 8.39e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96279.t1 | AT1G62420 | 44.337 | 309 | 127 | 13 | 1 | 296 | 1 | 277 | 1.96e-62 | 199 |
| MS.gene96279.t1 | AT1G12030 | 46.715 | 274 | 121 | 10 | 34 | 297 | 29 | 287 | 1.29e-61 | 197 |
| MS.gene96279.t1 | AT3G07350 | 32.867 | 286 | 171 | 7 | 22 | 288 | 14 | 297 | 1.40e-40 | 143 |
| MS.gene96279.t1 | AT4G14620 | 33.188 | 229 | 135 | 4 | 35 | 257 | 54 | 270 | 1.41e-39 | 141 |
| MS.gene96279.t1 | AT3G25240 | 38.919 | 185 | 94 | 3 | 102 | 267 | 85 | 269 | 4.28e-36 | 131 |
| MS.gene96279.t1 | AT2G38820 | 43.750 | 112 | 63 | 0 | 142 | 253 | 171 | 282 | 9.30e-35 | 128 |
| MS.gene96279.t1 | AT4G32480 | 33.171 | 205 | 112 | 5 | 69 | 255 | 50 | 247 | 1.53e-33 | 124 |
| MS.gene96279.t1 | AT3G22970 | 31.915 | 235 | 142 | 5 | 32 | 255 | 66 | 293 | 3.14e-32 | 122 |
| MS.gene96279.t1 | AT3G22970 | 40.476 | 126 | 75 | 0 | 130 | 255 | 57 | 182 | 6.08e-32 | 119 |
| MS.gene96279.t1 | AT3G54550 | 43.590 | 117 | 62 | 1 | 142 | 254 | 156 | 272 | 5.21e-31 | 117 |
| MS.gene96279.t1 | AT2G20670 | 37.600 | 125 | 72 | 2 | 142 | 260 | 130 | 254 | 2.27e-25 | 102 |
| MS.gene96279.t1 | AT2G39650 | 33.103 | 145 | 91 | 1 | 120 | 258 | 38 | 182 | 6.30e-25 | 100 |
| MS.gene96279.t1 | AT2G39650 | 33.103 | 145 | 91 | 1 | 120 | 258 | 100 | 244 | 1.08e-24 | 100 |
| MS.gene96279.t1 | AT1G77145 | 39.130 | 138 | 66 | 3 | 134 | 253 | 79 | 216 | 6.19e-23 | 95.5 |
| MS.gene96279.t1 | AT1G77160 | 34.337 | 166 | 91 | 3 | 106 | 253 | 1 | 166 | 3.02e-21 | 89.7 |
| MS.gene96279.t1 | AT1G77160 | 34.337 | 166 | 91 | 3 | 106 | 253 | 56 | 221 | 5.43e-21 | 90.5 |
| MS.gene96279.t1 | AT1G77145 | 39.423 | 104 | 53 | 1 | 160 | 253 | 56 | 159 | 1.03e-17 | 80.1 |
Find 63 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATCTCAGGGATAATTT+TGG | 0.188513 | 8.4:+1403660 | MS.gene96279:CDS |
| AAATCATCAGTTAAACTTTC+AGG | 0.239669 | 8.4:-1402693 | None:intergenic |
| GATAATGTGCAGTGCTATTA+AGG | 0.247598 | 8.4:+1403491 | MS.gene96279:CDS |
| GGAACAATGTTTGAAATTAT+AGG | 0.274698 | 8.4:+1402567 | None:intergenic |
| CATAATCATGTCACGCTTGC+GGG | 0.278629 | 8.4:+1402968 | MS.gene96279:CDS |
| CATTAGTTGTTCTCTTATAC+TGG | 0.297305 | 8.4:-1403587 | None:intergenic |
| AAAGAAGTGTATTGATTTGT+AGG | 0.304916 | 8.4:-1403408 | None:intergenic |
| AGAAAGTCCATTGGATTTGA+TGG | 0.339951 | 8.4:+1403621 | MS.gene96279:CDS |
| CATTGTTGAAACATCCCTTA+TGG | 0.343346 | 8.4:+1403365 | MS.gene96279:CDS |
| CCTGAGATTGTATGCTTTCA+AGG | 0.359331 | 8.4:-1403649 | None:intergenic |
| AATTCTGTGAGAGCAGTATT+AGG | 0.375491 | 8.4:+1402747 | MS.gene96279:CDS |
| GAGTACATTGATGTGAATTA+TGG | 0.404322 | 8.4:+1403330 | MS.gene96279:CDS |
| CCTTGAAAGCATACAATCTC+AGG | 0.405320 | 8.4:+1403649 | MS.gene96279:CDS |
| CGTTAAATGCAGCAGTCAAC+TGG | 0.410653 | 8.4:-1403707 | None:intergenic |
| AATTATAGGAAGTGTTATTC+CGG | 0.414157 | 8.4:+1402581 | MS.gene96279:CDS |
| AGATCTTGTGAAATCGTTCA+TGG | 0.414693 | 8.4:+1402719 | MS.gene96279:CDS |
| GTAAAGTTGAAGAGCTGAAA+AGG | 0.427347 | 8.4:+1403460 | MS.gene96279:CDS |
| CTATTTCGAATTCTGCCATA+AGG | 0.447867 | 8.4:-1403380 | None:intergenic |
| GGTGGTGATAAGTCTTCGTC+TGG | 0.459599 | 8.4:+1402936 | MS.gene96279:CDS |
| AAAGCAGTGGAAGCGAGCAC+TGG | 0.461367 | 8.4:+1402670 | MS.gene96279:CDS |
| ACTTTACCAACAAATACTAA+AGG | 0.462980 | 8.4:-1403444 | None:intergenic |
| CTTTACCAACAAATACTAAA+GGG | 0.468349 | 8.4:-1403443 | None:intergenic |
| GAAAGAGAAGATTAGAAGAG+AGG | 0.483731 | 8.4:+1402890 | MS.gene96279:CDS |
| ATGTAGCTATTTCTTCTCCA+TGG | 0.487255 | 8.4:-1403546 | None:intergenic |
| TATTTCGAATTCTGCCATAA+GGG | 0.487390 | 8.4:-1403379 | None:intergenic |
| AGTAAAATTGATGTTAGAGT+TGG | 0.492479 | 8.4:+1403684 | MS.gene96279:CDS |
| GTATGATTATGAGGAGAAGA+AGG | 0.513246 | 8.4:+1402821 | MS.gene96279:CDS |
| TAAAGTTGAAGAGCTGAAAA+GGG | 0.521956 | 8.4:+1403461 | MS.gene96279:CDS |
| GCATAATCATGTCACGCTTG+CGG | 0.531893 | 8.4:+1402967 | MS.gene96279:CDS |
| GAACTTGCCATTCAAGTCGT+TGG | 0.532138 | 8.4:+1402915 | MS.gene96279:CDS |
| AGAAATAGAAAATTCCCATC+GGG | 0.533461 | 8.4:+1403300 | MS.gene96279:CDS |
| ATCACCACCAACGACTTGAA+TGG | 0.535962 | 8.4:-1402922 | None:intergenic |
| AGTAACGAGGCGGCGGCTCG+TGG | 0.543433 | 8.4:+1402636 | MS.gene96279:CDS |
| CAGGGCTTTGCAAATCTAAG+TGG | 0.555631 | 8.4:+1403274 | MS.gene96279:intron |
| CTGAGATTGTATGCTTTCAA+GGG | 0.558296 | 8.4:-1403648 | None:intergenic |
| TACATTGATGTGAATTATGG+TGG | 0.560910 | 8.4:+1403333 | MS.gene96279:CDS |
| TAAGGACTCTATGAAAACAA+TGG | 0.564737 | 8.4:+1403509 | MS.gene96279:CDS |
| GTTGCAACAAGAAAGTCCAT+TGG | 0.572572 | 8.4:+1403612 | MS.gene96279:CDS |
| AAGAAATAGAAAATTCCCAT+CGG | 0.581281 | 8.4:+1403299 | MS.gene96279:CDS |
| GGGTCTTCCATCAAATCCAA+TGG | 0.585157 | 8.4:-1403628 | None:intergenic |
| TTTACCTTCTCAATCCTCAC+CGG | 0.585662 | 8.4:-1402600 | None:intergenic |
| GTAACGAGGCGGCGGCTCGT+GGG | 0.587184 | 8.4:+1402637 | MS.gene96279:CDS |
| TGGATATGCATGTACCTCCA+TGG | 0.588780 | 8.4:+1403529 | MS.gene96279:CDS |
| ATAGCTACATGCAAGCTAAG+TGG | 0.590588 | 8.4:+1403559 | MS.gene96279:CDS |
| ACGAGGCGGCGGCTCGTGGG+AGG | 0.594621 | 8.4:+1402640 | MS.gene96279:CDS |
| ATGTCACGCTTGCGGGAGAG+AGG | 0.595841 | 8.4:+1402975 | MS.gene96279:CDS |
| GGTGAGGATTGAGAAGGTAA+AGG | 0.595964 | 8.4:+1402602 | MS.gene96279:CDS |
| CTTGCCATTCAAGTCGTTGG+TGG | 0.598897 | 8.4:+1402918 | MS.gene96279:CDS |
| GTTTGAGAGTAACGAGGCGG+CGG | 0.599979 | 8.4:+1402629 | MS.gene96279:CDS |
| AAGAGCTGAAAAGGGTTGTG+AGG | 0.601387 | 8.4:+1403469 | MS.gene96279:CDS |
| ATGTACTCATAGTCACCCGA+TGG | 0.622531 | 8.4:-1403315 | None:intergenic |
| AGGGCTTTGCAAATCTAAGT+GGG | 0.632011 | 8.4:+1403275 | MS.gene96279:intron |
| TAGGAAGTGTTATTCCGGTG+AGG | 0.632868 | 8.4:+1402586 | MS.gene96279:CDS |
| GTATAAGAGAACAACTAATG+AGG | 0.635389 | 8.4:+1403590 | MS.gene96279:CDS |
| CTTGAAAGCATACAATCTCA+GGG | 0.641796 | 8.4:+1403650 | MS.gene96279:CDS |
| GGGAGGCTATGTGAAAGCAG+TGG | 0.667259 | 8.4:+1402657 | MS.gene96279:CDS |
| TATTCCGGTGAGGATTGAGA+AGG | 0.668046 | 8.4:+1402596 | MS.gene96279:CDS |
| TGTACTCATAGTCACCCGAT+GGG | 0.668108 | 8.4:-1403314 | None:intergenic |
| TAGCTATTTCTTCTCCATGG+AGG | 0.674555 | 8.4:-1403543 | None:intergenic |
| AGTATTAGGAAATGAAGATG+CGG | 0.688266 | 8.4:+1402761 | MS.gene96279:CDS |
| GAGGATTGAGAAGGTAAAGG+CGG | 0.701460 | 8.4:+1402605 | MS.gene96279:CDS |
| GGCGTTTGAGAGTAACGAGG+CGG | 0.709363 | 8.4:+1402626 | MS.gene96279:CDS |
| GGCGGCGTTTGAGAGTAACG+AGG | 0.791545 | 8.4:+1402623 | MS.gene96279:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTATTAATTTAGTTT+TGG | + | chr8.4:1403090-1403109 | MS.gene96279:intron | 10.0% |
| !!! | GTATTAATTTAGTTTTGGTT+TGG | + | chr8.4:1403095-1403114 | MS.gene96279:intron | 20.0% |
| ! | AAATCATCAGTTAAACTTTC+AGG | - | chr8.4:1402696-1402715 | None:intergenic | 25.0% |
| ! | AAGAAATAGAAAATTCCCAT+CGG | + | chr8.4:1403299-1403318 | MS.gene96279:CDS | 25.0% |
| ! | ACTTAATTCATTCAAATGTG+AGG | + | chr8.4:1403037-1403056 | MS.gene96279:intron | 25.0% |
| ! | ACTTTACCAACAAATACTAA+AGG | - | chr8.4:1403447-1403466 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATGTTAGAGT+TGG | + | chr8.4:1403684-1403703 | MS.gene96279:CDS | 25.0% |
| ! | CTTTACCAACAAATACTAAA+GGG | - | chr8.4:1403446-1403465 | None:intergenic | 25.0% |
| !! | GATATACTGAAAGAGATTTT+CGG | + | chr8.4:1402843-1402862 | MS.gene96279:CDS | 25.0% |
| !!! | AAAGAAGTGTATTGATTTGT+AGG | - | chr8.4:1403411-1403430 | None:intergenic | 25.0% |
| !!! | AATTATAGGAAGTGTTATTC+CGG | + | chr8.4:1402581-1402600 | MS.gene96279:CDS | 25.0% |
| !!! | AATTTAGTTTTGGTTTGGTT+TGG | + | chr8.4:1403100-1403119 | MS.gene96279:intron | 25.0% |
| AGAAATAGAAAATTCCCATC+GGG | + | chr8.4:1403300-1403319 | MS.gene96279:CDS | 30.0% | |
| AGTATTAGGAAATGAAGATG+CGG | + | chr8.4:1402761-1402780 | MS.gene96279:CDS | 30.0% | |
| CATTAGTTGTTCTCTTATAC+TGG | - | chr8.4:1403590-1403609 | None:intergenic | 30.0% | |
| GAGTACATTGATGTGAATTA+TGG | + | chr8.4:1403330-1403349 | MS.gene96279:CDS | 30.0% | |
| GTATAAGAGAACAACTAATG+AGG | + | chr8.4:1403590-1403609 | MS.gene96279:CDS | 30.0% | |
| TAAAGTTGAAGAGCTGAAAA+GGG | + | chr8.4:1403461-1403480 | MS.gene96279:CDS | 30.0% | |
| TAAGGACTCTATGAAAACAA+TGG | + | chr8.4:1403509-1403528 | MS.gene96279:CDS | 30.0% | |
| TACATTGATGTGAATTATGG+TGG | + | chr8.4:1403333-1403352 | MS.gene96279:CDS | 30.0% | |
| TATTTCGAATTCTGCCATAA+GGG | - | chr8.4:1403382-1403401 | None:intergenic | 30.0% | |
| ! | ACAATCTCAGGGATAATTTT+GGG | + | chr8.4:1403661-1403680 | MS.gene96279:CDS | 30.0% |
| ! | GTTTTCCCTTTAGTATTTGT+TGG | + | chr8.4:1403438-1403457 | MS.gene96279:CDS | 30.0% |
| ! | TACAATCTCAGGGATAATTT+TGG | + | chr8.4:1403660-1403679 | MS.gene96279:CDS | 30.0% |
| !! | TTTTGAGTGGTATGATTATG+AGG | + | chr8.4:1402812-1402831 | MS.gene96279:CDS | 30.0% |
| AATTCTGTGAGAGCAGTATT+AGG | + | chr8.4:1402747-1402766 | MS.gene96279:CDS | 35.0% | |
| AGAAAGTCCATTGGATTTGA+TGG | + | chr8.4:1403621-1403640 | MS.gene96279:CDS | 35.0% | |
| AGATCTTGTGAAATCGTTCA+TGG | + | chr8.4:1402719-1402738 | MS.gene96279:CDS | 35.0% | |
| CATTGTTGAAACATCCCTTA+TGG | + | chr8.4:1403365-1403384 | MS.gene96279:CDS | 35.0% | |
| CTATTTCGAATTCTGCCATA+AGG | - | chr8.4:1403383-1403402 | None:intergenic | 35.0% | |
| CTGAGATTGTATGCTTTCAA+GGG | - | chr8.4:1403651-1403670 | None:intergenic | 35.0% | |
| GAAAGAGAAGATTAGAAGAG+AGG | + | chr8.4:1402890-1402909 | MS.gene96279:CDS | 35.0% | |
| GTAAAGTTGAAGAGCTGAAA+AGG | + | chr8.4:1403460-1403479 | MS.gene96279:CDS | 35.0% | |
| GTATGATTATGAGGAGAAGA+AGG | + | chr8.4:1402821-1402840 | MS.gene96279:CDS | 35.0% | |
| ! | ATGATGATCGTGATTTTGAG+TGG | + | chr8.4:1402799-1402818 | MS.gene96279:CDS | 35.0% |
| ! | CTTGAAAGCATACAATCTCA+GGG | + | chr8.4:1403650-1403669 | MS.gene96279:CDS | 35.0% |
| ! | GATAATGTGCAGTGCTATTA+AGG | + | chr8.4:1403491-1403510 | MS.gene96279:CDS | 35.0% |
| !! | ATGTAGCTATTTCTTCTCCA+TGG | - | chr8.4:1403549-1403568 | None:intergenic | 35.0% |
| AGGGCTTTGCAAATCTAAGT+GGG | + | chr8.4:1403275-1403294 | MS.gene96279:intron | 40.0% | |
| ATAGCTACATGCAAGCTAAG+TGG | + | chr8.4:1403559-1403578 | MS.gene96279:CDS | 40.0% | |
| CCTGAGATTGTATGCTTTCA+AGG | - | chr8.4:1403652-1403671 | None:intergenic | 40.0% | |
| GTTGCAACAAGAAAGTCCAT+TGG | + | chr8.4:1403612-1403631 | MS.gene96279:CDS | 40.0% | |
| TTTACCTTCTCAATCCTCAC+CGG | - | chr8.4:1402603-1402622 | None:intergenic | 40.0% | |
| ! | CCTTGAAAGCATACAATCTC+AGG | + | chr8.4:1403649-1403668 | MS.gene96279:CDS | 40.0% |
| !! | TAGCTATTTCTTCTCCATGG+AGG | - | chr8.4:1403546-1403565 | None:intergenic | 40.0% |
| !! | TGCTGTACTTTTTGTGTCCA+GGG | + | chr8.4:1403256-1403275 | MS.gene96279:intron | 40.0% |
| !! | TTGCTGTACTTTTTGTGTCC+AGG | + | chr8.4:1403255-1403274 | MS.gene96279:intron | 40.0% |
| AAGAGCTGAAAAGGGTTGTG+AGG | + | chr8.4:1403469-1403488 | MS.gene96279:CDS | 45.0% | |
| ATCACCACCAACGACTTGAA+TGG | - | chr8.4:1402925-1402944 | None:intergenic | 45.0% | |
| ATGTACTCATAGTCACCCGA+TGG | - | chr8.4:1403318-1403337 | None:intergenic | 45.0% | |
| CACTTAGATTTGCAAAGCCC+TGG | - | chr8.4:1403276-1403295 | None:intergenic | 45.0% | |
| CAGGGCTTTGCAAATCTAAG+TGG | + | chr8.4:1403274-1403293 | MS.gene96279:intron | 45.0% | |
| CATAATCATGTCACGCTTGC+GGG | + | chr8.4:1402968-1402987 | MS.gene96279:CDS | 45.0% | |
| CGTTAAATGCAGCAGTCAAC+TGG | - | chr8.4:1403710-1403729 | None:intergenic | 45.0% | |
| GAACTTGCCATTCAAGTCGT+TGG | + | chr8.4:1402915-1402934 | MS.gene96279:CDS | 45.0% | |
| GAGGATTGAGAAGGTAAAGG+CGG | + | chr8.4:1402605-1402624 | MS.gene96279:CDS | 45.0% | |
| GCATAATCATGTCACGCTTG+CGG | + | chr8.4:1402967-1402986 | MS.gene96279:CDS | 45.0% | |
| GGGTCTTCCATCAAATCCAA+TGG | - | chr8.4:1403631-1403650 | None:intergenic | 45.0% | |
| GGTGAGGATTGAGAAGGTAA+AGG | + | chr8.4:1402602-1402621 | MS.gene96279:CDS | 45.0% | |
| TATTCCGGTGAGGATTGAGA+AGG | + | chr8.4:1402596-1402615 | MS.gene96279:CDS | 45.0% | |
| TGGATATGCATGTACCTCCA+TGG | + | chr8.4:1403529-1403548 | MS.gene96279:CDS | 45.0% | |
| TGTACTCATAGTCACCCGAT+GGG | - | chr8.4:1403317-1403336 | None:intergenic | 45.0% | |
| !! | TAGGAAGTGTTATTCCGGTG+AGG | + | chr8.4:1402586-1402605 | MS.gene96279:CDS | 45.0% |
| CTTGCCATTCAAGTCGTTGG+TGG | + | chr8.4:1402918-1402937 | MS.gene96279:CDS | 50.0% | |
| GGTGGTGATAAGTCTTCGTC+TGG | + | chr8.4:1402936-1402955 | MS.gene96279:CDS | 50.0% | |
| AAAGCAGTGGAAGCGAGCAC+TGG | + | chr8.4:1402670-1402689 | MS.gene96279:CDS | 55.0% | |
| GGCGTTTGAGAGTAACGAGG+CGG | + | chr8.4:1402626-1402645 | MS.gene96279:CDS | 55.0% | |
| GGGAGGCTATGTGAAAGCAG+TGG | + | chr8.4:1402657-1402676 | MS.gene96279:CDS | 55.0% | |
| GTTTGAGAGTAACGAGGCGG+CGG | + | chr8.4:1402629-1402648 | MS.gene96279:CDS | 55.0% | |
| !! | CGGGAGAGAGGTTTTGATGC+TGG | + | chr8.4:1402987-1403006 | MS.gene96279:CDS | 55.0% |
| ATGTCACGCTTGCGGGAGAG+AGG | + | chr8.4:1402975-1402994 | MS.gene96279:CDS | 60.0% | |
| GGCGGCGTTTGAGAGTAACG+AGG | + | chr8.4:1402623-1402642 | MS.gene96279:CDS | 60.0% | |
| AGTAACGAGGCGGCGGCTCG+TGG | + | chr8.4:1402636-1402655 | MS.gene96279:CDS | 70.0% | |
| GTAACGAGGCGGCGGCTCGT+GGG | + | chr8.4:1402637-1402656 | MS.gene96279:CDS | 70.0% | |
| ! | ACGAGGCGGCGGCTCGTGGG+AGG | + | chr8.4:1402640-1402659 | MS.gene96279:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1402573 | 1403737 | 1402573 | ID=MS.gene96279 |
| chr8.4 | mRNA | 1402573 | 1403737 | 1402573 | ID=MS.gene96279.t1;Parent=MS.gene96279 |
| chr8.4 | exon | 1402573 | 1403008 | 1402573 | ID=MS.gene96279.t1.exon1;Parent=MS.gene96279.t1 |
| chr8.4 | CDS | 1402573 | 1403008 | 1402573 | ID=cds.MS.gene96279.t1;Parent=MS.gene96279.t1 |
| chr8.4 | exon | 1403277 | 1403737 | 1403277 | ID=MS.gene96279.t1.exon2;Parent=MS.gene96279.t1 |
| chr8.4 | CDS | 1403277 | 1403737 | 1403277 | ID=cds.MS.gene96279.t1;Parent=MS.gene96279.t1 |
| Gene Sequence |
| Protein sequence |
