Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96306.t1 | KEH41313.1 | 97.6 | 127 | 3 | 0 | 2 | 128 | 11 | 137 | 6.20E-66 | 260 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96306.t1 | Q84WU2 | 65.3 | 124 | 38 | 4 | 8 | 128 | 14 | 135 | 5.0e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96306.t1 | A0A072VIQ6 | 97.6 | 127 | 3 | 0 | 2 | 128 | 11 | 137 | 4.5e-66 | 260.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056050 | MS.gene96306 | 0.814932 | 1.20E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96306.t1 | MTR_1g041240 | 97.638 | 127 | 3 | 0 | 2 | 128 | 11 | 137 | 1.31e-83 | 265 |
| MS.gene96306.t1 | MTR_1g041240 | 96.875 | 128 | 3 | 1 | 2 | 128 | 11 | 138 | 6.41e-82 | 260 |
| MS.gene96306.t1 | MTR_1g041240 | 96.063 | 127 | 4 | 1 | 3 | 128 | 10 | 136 | 1.05e-80 | 257 |
| MS.gene96306.t1 | MTR_3g079840 | 59.677 | 124 | 47 | 2 | 8 | 128 | 14 | 137 | 6.12e-46 | 159 |
| MS.gene96306.t1 | MTR_3g079840 | 59.677 | 124 | 47 | 2 | 8 | 128 | 13 | 136 | 6.36e-46 | 159 |
| MS.gene96306.t1 | MTR_5g086700 | 56.391 | 133 | 53 | 2 | 1 | 128 | 9 | 141 | 5.18e-44 | 153 |
| MS.gene96306.t1 | MTR_5g086700 | 56.391 | 133 | 53 | 2 | 1 | 128 | 9 | 141 | 5.39e-44 | 153 |
| MS.gene96306.t1 | MTR_5g091450 | 57.843 | 102 | 37 | 3 | 29 | 128 | 17 | 114 | 9.98e-33 | 121 |
| MS.gene96306.t1 | MTR_5g091180 | 48.148 | 108 | 49 | 3 | 23 | 128 | 25 | 127 | 2.37e-27 | 106 |
| MS.gene96306.t1 | MTR_5g091550 | 49.412 | 85 | 42 | 1 | 45 | 128 | 15 | 99 | 1.58e-23 | 94.7 |
| MS.gene96306.t1 | MTR_5g091550 | 49.412 | 85 | 42 | 1 | 45 | 128 | 15 | 99 | 4.02e-23 | 94.0 |
| MS.gene96306.t1 | MTR_1g044450 | 43.902 | 82 | 42 | 3 | 48 | 125 | 64 | 145 | 2.38e-17 | 77.4 |
| MS.gene96306.t1 | MTR_1g073790 | 42.683 | 82 | 43 | 3 | 48 | 125 | 61 | 142 | 8.87e-17 | 75.9 |
| MS.gene96306.t1 | MTR_1g073800 | 41.463 | 82 | 44 | 3 | 48 | 125 | 48 | 129 | 2.01e-16 | 74.7 |
| MS.gene96306.t1 | MTR_1g042160 | 39.535 | 86 | 49 | 2 | 49 | 131 | 13 | 98 | 3.35e-16 | 73.6 |
| MS.gene96306.t1 | MTR_8g011730 | 39.535 | 86 | 48 | 2 | 47 | 128 | 12 | 97 | 1.59e-13 | 66.2 |
| MS.gene96306.t1 | MTR_7g107160 | 35.632 | 87 | 46 | 1 | 50 | 126 | 131 | 217 | 5.38e-13 | 65.1 |
| MS.gene96306.t1 | MTR_7g107200 | 36.905 | 84 | 49 | 2 | 49 | 128 | 13 | 96 | 2.85e-12 | 62.8 |
| MS.gene96306.t1 | MTR_3g106700 | 37.113 | 97 | 49 | 3 | 44 | 128 | 401 | 497 | 3.86e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96306.t1 | AT5G06600 | 68.000 | 125 | 34 | 4 | 8 | 128 | 14 | 136 | 1.02e-51 | 176 |
| MS.gene96306.t1 | AT5G06600 | 68.000 | 125 | 34 | 4 | 8 | 128 | 14 | 136 | 1.08e-51 | 176 |
| MS.gene96306.t1 | AT5G06600 | 68.000 | 125 | 34 | 4 | 8 | 128 | 13 | 135 | 1.18e-51 | 175 |
| MS.gene96306.t1 | AT3G11910 | 63.710 | 124 | 40 | 3 | 8 | 128 | 13 | 134 | 1.40e-48 | 167 |
| MS.gene96306.t1 | AT3G11910 | 63.710 | 124 | 40 | 3 | 8 | 128 | 13 | 134 | 1.40e-48 | 167 |
| MS.gene96306.t1 | AT3G11910 | 63.710 | 124 | 40 | 3 | 8 | 128 | 14 | 135 | 1.40e-48 | 167 |
| MS.gene96306.t1 | AT3G11910 | 63.710 | 124 | 40 | 3 | 8 | 128 | 14 | 135 | 1.40e-48 | 167 |
| MS.gene96306.t1 | AT3G58250 | 53.012 | 83 | 36 | 2 | 49 | 128 | 10 | 92 | 9.54e-25 | 96.7 |
| MS.gene96306.t1 | AT3G58370 | 54.217 | 83 | 36 | 2 | 49 | 129 | 9 | 91 | 1.23e-23 | 93.6 |
| MS.gene96306.t1 | AT3G58270 | 48.718 | 78 | 39 | 1 | 49 | 125 | 8 | 85 | 4.78e-20 | 84.3 |
| MS.gene96306.t1 | AT3G58270 | 48.718 | 78 | 39 | 1 | 49 | 125 | 8 | 85 | 4.78e-20 | 84.3 |
| MS.gene96306.t1 | AT3G58270 | 48.718 | 78 | 39 | 1 | 49 | 125 | 8 | 85 | 4.78e-20 | 84.3 |
| MS.gene96306.t1 | AT3G58360 | 50.000 | 78 | 38 | 1 | 49 | 125 | 8 | 85 | 9.63e-20 | 82.8 |
| MS.gene96306.t1 | AT3G58410 | 46.667 | 75 | 39 | 1 | 49 | 122 | 8 | 82 | 2.16e-19 | 82.4 |
| MS.gene96306.t1 | AT3G58410 | 48.611 | 72 | 36 | 1 | 49 | 119 | 29 | 100 | 3.55e-19 | 81.6 |
| MS.gene96306.t1 | AT2G05410 | 47.561 | 82 | 40 | 2 | 50 | 128 | 9 | 90 | 8.68e-19 | 80.5 |
| MS.gene96306.t1 | AT3G58210 | 45.783 | 83 | 42 | 2 | 48 | 127 | 7 | 89 | 1.11e-18 | 80.5 |
| MS.gene96306.t1 | AT3G58340 | 41.975 | 81 | 46 | 1 | 49 | 128 | 8 | 88 | 2.39e-18 | 79.3 |
| MS.gene96306.t1 | AT3G58340 | 41.975 | 81 | 46 | 1 | 49 | 128 | 8 | 88 | 2.46e-18 | 79.3 |
| MS.gene96306.t1 | AT3G58350 | 47.561 | 82 | 41 | 2 | 49 | 128 | 8 | 89 | 2.21e-17 | 76.6 |
| MS.gene96306.t1 | AT3G58350 | 47.561 | 82 | 41 | 2 | 49 | 128 | 8 | 89 | 2.21e-17 | 76.6 |
| MS.gene96306.t1 | AT3G44800 | 45.679 | 81 | 42 | 2 | 49 | 127 | 5 | 85 | 7.10e-17 | 75.5 |
| MS.gene96306.t1 | AT2G05420 | 44.048 | 84 | 38 | 2 | 51 | 125 | 11 | 94 | 7.16e-17 | 75.1 |
| MS.gene96306.t1 | AT1G31390 | 42.045 | 88 | 47 | 2 | 42 | 125 | 1 | 88 | 1.19e-16 | 74.3 |
| MS.gene96306.t1 | AT1G04300 | 43.902 | 82 | 42 | 3 | 48 | 125 | 68 | 149 | 1.64e-16 | 75.1 |
| MS.gene96306.t1 | AT3G44790 | 45.122 | 82 | 39 | 3 | 49 | 128 | 5 | 82 | 2.28e-16 | 73.9 |
| MS.gene96306.t1 | AT3G27040 | 47.297 | 74 | 37 | 2 | 49 | 120 | 9 | 82 | 5.21e-16 | 72.4 |
| MS.gene96306.t1 | AT2G01790 | 44.872 | 78 | 39 | 2 | 52 | 125 | 11 | 88 | 7.53e-16 | 72.0 |
| MS.gene96306.t1 | AT5G43560 | 44.000 | 75 | 40 | 2 | 47 | 119 | 68 | 142 | 1.86e-15 | 72.4 |
| MS.gene96306.t1 | AT5G43560 | 44.000 | 75 | 40 | 2 | 47 | 119 | 68 | 142 | 1.86e-15 | 72.4 |
| MS.gene96306.t1 | AT3G58200 | 35.955 | 89 | 55 | 2 | 42 | 128 | 1 | 89 | 2.65e-15 | 71.2 |
| MS.gene96306.t1 | AT3G58260 | 44.444 | 81 | 40 | 3 | 50 | 125 | 9 | 89 | 4.12e-15 | 70.5 |
| MS.gene96306.t1 | AT3G58290 | 36.000 | 100 | 51 | 3 | 41 | 128 | 3 | 101 | 4.25e-15 | 70.1 |
| MS.gene96306.t1 | AT3G58290 | 36.000 | 100 | 51 | 3 | 41 | 128 | 3 | 101 | 8.88e-15 | 69.3 |
| MS.gene96306.t1 | AT1G04300 | 42.222 | 90 | 40 | 5 | 48 | 125 | 68 | 157 | 9.46e-15 | 70.1 |
| MS.gene96306.t1 | AT3G58220 | 39.759 | 83 | 44 | 4 | 46 | 124 | 7 | 87 | 2.34e-14 | 68.6 |
| MS.gene96306.t1 | AT1G31400 | 43.210 | 81 | 42 | 2 | 49 | 125 | 8 | 88 | 2.96e-14 | 67.8 |
| MS.gene96306.t1 | AT3G58220 | 39.744 | 78 | 43 | 3 | 46 | 119 | 7 | 84 | 3.10e-14 | 68.2 |
| MS.gene96306.t1 | AT3G58220 | 39.744 | 78 | 43 | 3 | 46 | 119 | 7 | 84 | 3.29e-14 | 67.4 |
| MS.gene96306.t1 | AT3G58220 | 39.759 | 83 | 44 | 4 | 46 | 124 | 7 | 87 | 3.49e-14 | 68.2 |
| MS.gene96306.t1 | AT3G58440 | 45.070 | 71 | 37 | 2 | 49 | 118 | 10 | 79 | 6.26e-14 | 67.8 |
| MS.gene96306.t1 | AT5G52330 | 39.024 | 82 | 46 | 3 | 48 | 125 | 19 | 100 | 6.62e-14 | 67.4 |
| MS.gene96306.t1 | AT5G52330 | 39.024 | 82 | 46 | 3 | 48 | 125 | 19 | 100 | 6.62e-14 | 67.4 |
| MS.gene96306.t1 | AT5G52330 | 39.024 | 82 | 46 | 3 | 48 | 125 | 19 | 100 | 6.62e-14 | 67.4 |
| MS.gene96306.t1 | AT4G09780 | 36.559 | 93 | 56 | 2 | 40 | 129 | 205 | 297 | 9.13e-14 | 67.4 |
| MS.gene96306.t1 | AT3G58220 | 39.080 | 87 | 49 | 3 | 46 | 128 | 7 | 93 | 1.56e-13 | 66.6 |
| MS.gene96306.t1 | AT4G09780 | 37.500 | 88 | 52 | 2 | 40 | 124 | 205 | 292 | 4.75e-13 | 65.1 |
| MS.gene96306.t1 | AT1G04300 | 43.284 | 67 | 35 | 2 | 62 | 125 | 64 | 130 | 1.56e-12 | 63.9 |
| MS.gene96306.t1 | AT3G58380 | 37.500 | 80 | 48 | 2 | 49 | 126 | 8 | 87 | 1.84e-12 | 63.2 |
| MS.gene96306.t1 | AT3G58400 | 48.077 | 52 | 26 | 1 | 69 | 119 | 24 | 75 | 6.30e-12 | 61.6 |
| MS.gene96306.t1 | AT2G42480 | 37.500 | 72 | 43 | 1 | 50 | 119 | 8 | 79 | 1.20e-11 | 61.2 |
| MS.gene96306.t1 | AT2G25330 | 26.496 | 117 | 76 | 5 | 21 | 128 | 16 | 131 | 4.89e-11 | 59.7 |
Find 28 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTATTGGTGGCTATAAA+TGG | 0.267592 | 5.1:-38429147 | MS.gene96306:intron |
| TCTGATGCTGTTGTTGTTGA+AGG | 0.347454 | 5.1:-38429774 | MS.gene96306:CDS |
| CAGCTTAACTGTGGTCAATC+AGG | 0.357604 | 5.1:-38428905 | MS.gene96306:CDS |
| GATGCAGGTTCGATGCCTTA+TGG | 0.373749 | 5.1:-38428949 | MS.gene96306:CDS |
| ACAACAACAGCATCAGAGTT+AGG | 0.423777 | 5.1:+38429780 | None:intergenic |
| ACATCGGAATAATGTTTCTT+CGG | 0.432526 | 5.1:+38429172 | None:intergenic |
| GCAGTTGAAGATCCGCCAAT+TGG | 0.442781 | 5.1:-38429232 | MS.gene96306:CDS |
| TATATAGATGTTACAGATGC+AGG | 0.456399 | 5.1:-38428964 | MS.gene96306:CDS |
| TGTTCAGCATTGTTCCCCTT+CGG | 0.468250 | 5.1:+38428997 | None:intergenic |
| AGTAAATATTCCGTCAGAAA+AGG | 0.469439 | 5.1:-38428877 | MS.gene96306:CDS |
| GTCCATGTGAATCTCCCAAT+TGG | 0.481266 | 5.1:+38429217 | None:intergenic |
| CAGTTGAAGATCCGCCAATT+GGG | 0.486788 | 5.1:-38429231 | MS.gene96306:CDS |
| GCATTACCTTCCATAGGTTG+AGG | 0.497016 | 5.1:+38429750 | None:intergenic |
| TGTTGAAGGTCCTCAACCTA+TGG | 0.497121 | 5.1:-38429760 | MS.gene96306:CDS |
| CAGGTTCGATGCCTTATGGT+TGG | 0.516574 | 5.1:-38428945 | MS.gene96306:CDS |
| GCAAATCTAGTCCAACCATA+AGG | 0.541036 | 5.1:+38428934 | None:intergenic |
| CACATTGCATTACCTTCCAT+AGG | 0.574604 | 5.1:+38429744 | None:intergenic |
| CGCCAATTGGGAGATTCACA+TGG | 0.581165 | 5.1:-38429219 | MS.gene96306:CDS |
| GCGGATACTGATCTTTCCGA+AGG | 0.601985 | 5.1:-38429013 | MS.gene96306:CDS |
| CACAAGTACAGTGGATGCTG+TGG | 0.605419 | 5.1:-38429254 | MS.gene96306:CDS |
| CGGATACTGATCTTTCCGAA+GGG | 0.607412 | 5.1:-38429012 | MS.gene96306:CDS |
| CATGTGAATCTCCCAATTGG+CGG | 0.608755 | 5.1:+38429220 | None:intergenic |
| GAAGGTCCTCAACCTATGGA+AGG | 0.631259 | 5.1:-38429756 | MS.gene96306:intron |
| TGCACAGTTCAGCTTAACTG+TGG | 0.636127 | 5.1:-38428914 | MS.gene96306:CDS |
| GTAGCAACAGAATCTTGAAG+TGG | 0.641625 | 5.1:-38429820 | MS.gene96306:intron |
| AGCAGAAAACACAAGTACAG+TGG | 0.653432 | 5.1:-38429263 | MS.gene96306:CDS |
| GCCACCAATAGTGAAAACAT+CGG | 0.685681 | 5.1:+38429156 | None:intergenic |
| GGATACTGATCTTTCCGAAG+GGG | 0.700894 | 5.1:-38429011 | MS.gene96306:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAATAAAATTAAA+AGG | + | chr5.1:38429073-38429092 | None:intergenic | 0.0% |
| !! | AATAATTAAAAAGACTAATT+TGG | - | chr5.1:38429018-38429037 | MS.gene96306:intron | 10.0% |
| !! | TAAATATTGAATATTATACA+TGG | + | chr5.1:38430956-38430975 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | - | chr5.1:38429510-38429529 | MS.gene96306:intron | 10.0% |
| !!! | ATAAGTAAATTTTTTTTTGT+AGG | - | chr5.1:38429571-38429590 | MS.gene96306:intron | 10.0% |
| !!! | TAAGTAAATTTTTTTTTGTA+GGG | - | chr5.1:38429572-38429591 | MS.gene96306:intron | 10.0% |
| !!! | TTATTTTCTATTTTTTTGAA+AGG | - | chr5.1:38428962-38428981 | MS.gene96306:CDS | 10.0% |
| !! | AAATAATTTGGTCAAATATA+TGG | + | chr5.1:38429712-38429731 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr5.1:38429261-38429280 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr5.1:38429601-38429620 | MS.gene96306:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr5.1:38429620-38429601 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | + | chr5.1:38429380-38429399 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | - | chr5.1:38429539-38429558 | MS.gene96306:intron | 15.0% |
| !!! | AGTGTCAATTTAATTTTTTT+AGG | - | chr5.1:38430686-38430705 | MS.gene96306:intron | 15.0% |
| !!! | ATATTTGACCAAATTATTTT+TGG | - | chr5.1:38429713-38429732 | MS.gene96306:intron | 15.0% |
| !!! | ATTTTTTGCGATATTTTTTT+CGG | + | chr5.1:38429345-38429364 | None:intergenic | 15.0% |
| !!! | CATTTTTACCAAAAATAATT+TGG | + | chr5.1:38429724-38429743 | None:intergenic | 15.0% |
| !!! | GTGTCAATTTAATTTTTTTA+GGG | - | chr5.1:38430687-38430706 | MS.gene96306:intron | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | - | chr5.1:38429538-38429557 | MS.gene96306:intron | 15.0% |
| !! | GTGTGTACTAATTTAATATA+GGG | - | chr5.1:38429115-38429134 | MS.gene96306:intron | 20.0% |
| !! | TGTGTGTACTAATTTAATAT+AGG | - | chr5.1:38429114-38429133 | MS.gene96306:intron | 20.0% |
| !!! | ATTCTTTTGAATTCTTGTTA+TGG | - | chr5.1:38430534-38430553 | MS.gene96306:intron | 20.0% |
| !!! | GAATTTTTGTGATTTTTTTG+TGG | - | chr5.1:38430195-38430214 | MS.gene96306:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr5.1:38429291-38429310 | MS.gene96306:intron | 20.0% |
| !!! | TATAGGGTTAATTATGTTTT+TGG | - | chr5.1:38429131-38429150 | MS.gene96306:intron | 20.0% |
| !!! | TTTCTTTTGAATTCATGTTA+TGG | - | chr5.1:38430408-38430427 | MS.gene96306:intron | 20.0% |
| !!! | TTTTGTTATTGGAAATGTTA+GGG | - | chr5.1:38430431-38430450 | MS.gene96306:intron | 20.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr5.1:38429250-38429269 | None:intergenic | 25.0% |
| ! | AATATTTATGCGTATCATAG+GGG | - | chr5.1:38430968-38430987 | MS.gene96306:intron | 25.0% |
| ! | ATGGATGGTCATATATTAAA+GGG | + | chr5.1:38429675-38429694 | None:intergenic | 25.0% |
| ! | CAATATTTATGCGTATCATA+GGG | - | chr5.1:38430967-38430986 | MS.gene96306:intron | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | - | chr5.1:38429315-38429334 | MS.gene96306:intron | 25.0% |
| ! | TATGGATGGTCATATATTAA+AGG | + | chr5.1:38429676-38429695 | None:intergenic | 25.0% |
| ! | TCAATATTTATGCGTATCAT+AGG | - | chr5.1:38430966-38430985 | MS.gene96306:intron | 25.0% |
| !! | ATTTTTGTCCTTTTCGTATT+TGG | - | chr5.1:38430752-38430771 | MS.gene96306:intron | 25.0% |
| !! | TATGGATTTACTTCTAGTTA+TGG | + | chr5.1:38429694-38429713 | None:intergenic | 25.0% |
| !!! | AAGTGCAGAAATTTTTTGTA+GGG | + | chr5.1:38429218-38429237 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATTGGAAATGTT+AGG | - | chr5.1:38430430-38430449 | MS.gene96306:intron | 25.0% |
| !!! | TAAGTGCAGAAATTTTTTGT+AGG | + | chr5.1:38429219-38429238 | None:intergenic | 25.0% |
| !!! | TCATGTTATGGTTTTGTTAT+TGG | - | chr5.1:38430420-38430439 | MS.gene96306:intron | 25.0% |
| !!! | TCTTGTTATGGTTTTGTTAT+TGG | - | chr5.1:38430546-38430565 | MS.gene96306:intron | 25.0% |
| !!! | TTATATTGATTTAAACGTGC+AGG | - | chr5.1:38431013-38431032 | MS.gene96306:intron | 25.0% |
| !!! | TTGTTTGATGATGATTACTA+GGG | - | chr5.1:38430154-38430173 | MS.gene96306:intron | 25.0% |
| !!! | TTTGTTATTGGAAATGTTAG+GGG | - | chr5.1:38430432-38430451 | MS.gene96306:intron | 25.0% |
| !!! | TTTGTTTGATGATGATTACT+AGG | - | chr5.1:38430153-38430172 | MS.gene96306:intron | 25.0% |
| !!! | TTTTTGGAGAAGAAGTTTAT+TGG | - | chr5.1:38430335-38430354 | MS.gene96306:intron | 25.0% |
| AACTACTACCAAATACGAAA+AGG | + | chr5.1:38430763-38430782 | None:intergenic | 30.0% | |
| AAGGACAAAAATCAAACTAG+CGG | + | chr5.1:38430744-38430763 | None:intergenic | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr5.1:38429616-38429635 | MS.gene96306:intron | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | + | chr5.1:38429635-38429616 | None:intergenic | 30.0% | |
| ACATCGGAATAATGTTTCTT+CGG | + | chr5.1:38430879-38430898 | None:intergenic | 30.0% | |
| AGTAAATATTCCGTCAGAAA+AGG | - | chr5.1:38431171-38431190 | MS.gene96306:intron | 30.0% | |
| ATGTGAATAATAAGCGAAGA+AGG | + | chr5.1:38429865-38429884 | None:intergenic | 30.0% | |
| TATATAGATGTTACAGATGC+AGG | - | chr5.1:38431084-38431103 | MS.gene96306:intron | 30.0% | |
| TGTGAATAATAAGCGAAGAA+GGG | + | chr5.1:38429864-38429883 | None:intergenic | 30.0% | |
| ! | AGAAGAATAACCTTTTCTGA+CGG | + | chr5.1:38431184-38431203 | None:intergenic | 30.0% |
| ! | CAAGTTTAGAACACTATGAA+CGG | + | chr5.1:38429476-38429495 | None:intergenic | 30.0% |
| ! | GATTTACTTCTAGTTATGGA+TGG | + | chr5.1:38429690-38429709 | None:intergenic | 30.0% |
| ! | TACAAGGTTGCAATTTTGTA+GGG | - | chr5.1:38429632-38429651 | MS.gene96306:intron | 30.0% |
| ! | TATTCCGATGTTTTCACTAT+TGG | - | chr5.1:38430888-38430907 | MS.gene96306:intron | 30.0% |
| ! | TTACAAGGTTGCAATTTTGT+AGG | - | chr5.1:38429631-38429650 | MS.gene96306:intron | 30.0% |
| ! | TTACTAGGGTTTAAGATATC+TGG | - | chr5.1:38430168-38430187 | MS.gene96306:intron | 30.0% |
| !! | GGTGTCAACTTAATTTGTAA+CGG | - | chr5.1:38430475-38430494 | MS.gene96306:intron | 30.0% |
| !!! | GCAATGTGATGGTTATTTTT+TGG | - | chr5.1:38430319-38430338 | MS.gene96306:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | chr5.1:38429342-38429361 | None:intergenic | 30.0% |
| ATGCGGAAATCGAAATCTTT+CGG | + | chr5.1:38430076-38430095 | None:intergenic | 35.0% | |
| ATTGCAAGAACAACGAAATG+CGG | + | chr5.1:38430093-38430112 | None:intergenic | 35.0% | |
| GATTTCAGTGAATGAATGTG+TGG | - | chr5.1:38430655-38430674 | MS.gene96306:intron | 35.0% | |
| GGGAATTTGGTCTAAACATT+GGG | + | chr5.1:38429774-38429793 | None:intergenic | 35.0% | |
| GTGAATAATAAGCGAAGAAG+GGG | + | chr5.1:38429863-38429882 | None:intergenic | 35.0% | |
| ! | GGACTATTGACAATTTTTCG+AGG | - | chr5.1:38430850-38430869 | MS.gene96306:intron | 35.0% |
| ! | TCACTATTGGTGGCTATAAA+TGG | - | chr5.1:38430901-38430920 | MS.gene96306:intron | 35.0% |
| !! | TATTGATTTAAACGTGCAGG+CGG | - | chr5.1:38431016-38431035 | MS.gene96306:intron | 35.0% |
| !!! | TGTTTTTGGTCCCTACAAAA+TGG | - | chr5.1:38429145-38429164 | MS.gene96306:intron | 35.0% |
| AAAAGGATACTGCGGGAATT+TGG | + | chr5.1:38429787-38429806 | None:intergenic | 40.0% | |
| ACAACAACAGCATCAGAGTT+AGG | + | chr5.1:38430271-38430290 | None:intergenic | 40.0% | |
| ACGCGATTGATTACCTCTAA+CGG | + | chr5.1:38430015-38430034 | None:intergenic | 40.0% | |
| AGCAGAAAACACAAGTACAG+TGG | - | chr5.1:38430785-38430804 | MS.gene96306:intron | 40.0% | |
| AGCATCAGTTGCGTTTACTA+CGG | + | chr5.1:38429810-38429829 | None:intergenic | 40.0% | |
| AGTTGCGTTTACTACGGAAA+AGG | + | chr5.1:38429804-38429823 | None:intergenic | 40.0% | |
| CACATTGCATTACCTTCCAT+AGG | + | chr5.1:38430307-38430326 | None:intergenic | 40.0% | |
| CGGGAATTTGGTCTAAACAT+TGG | + | chr5.1:38429775-38429794 | None:intergenic | 40.0% | |
| GCAAATCTAGTCCAACCATA+AGG | + | chr5.1:38431117-38431136 | None:intergenic | 40.0% | |
| GCCACCAATAGTGAAAACAT+CGG | + | chr5.1:38430895-38430914 | None:intergenic | 40.0% | |
| GTAGCAACAGAATCTTGAAG+TGG | - | chr5.1:38430228-38430247 | MS.gene96306:intron | 40.0% | |
| TACTACGGAAAAGGATACTG+CGG | + | chr5.1:38429795-38429814 | None:intergenic | 40.0% | |
| TGGAAGGTAATGCAATGTGA+TGG | - | chr5.1:38430308-38430327 | MS.gene96306:intron | 40.0% | |
| ! | TCCGATGTTTTCACTATTGG+TGG | - | chr5.1:38430891-38430910 | MS.gene96306:intron | 40.0% |
| ! | TCTGATGCTGTTGTTGTTGA+AGG | - | chr5.1:38430274-38430293 | MS.gene96306:intron | 40.0% |
| !! | TACAAGGTCGCCATTTTGTA+GGG | + | chr5.1:38429158-38429177 | None:intergenic | 40.0% |
| !! | TTACAAGGTCGCCATTTTGT+AGG | + | chr5.1:38429159-38429178 | None:intergenic | 40.0% |
| ACTACGGAAAAGGATACTGC+GGG | + | chr5.1:38429794-38429813 | None:intergenic | 45.0% | |
| ATAAGCGAAGAAGGGGAAGA+TGG | + | chr5.1:38429856-38429875 | None:intergenic | 45.0% | |
| ATGAAGCGAGCGAAGAAACT+GGG | + | chr5.1:38429957-38429976 | None:intergenic | 45.0% | |
| CAGCTTAACTGTGGTCAATC+AGG | - | chr5.1:38431143-38431162 | MS.gene96306:intron | 45.0% | |
| CAGTTGAAGATCCGCCAATT+GGG | - | chr5.1:38430817-38430836 | MS.gene96306:intron | 45.0% | |
| CATGTGAATCTCCCAATTGG+CGG | + | chr5.1:38430831-38430850 | None:intergenic | 45.0% | |
| CGATTGATTACCTCTAACGG+AGG | + | chr5.1:38430012-38430031 | None:intergenic | 45.0% | |
| CGGATACTGATCTTTCCGAA+GGG | - | chr5.1:38431036-38431055 | MS.gene96306:intron | 45.0% | |
| GATGAATGTGCGCAACGAAA+TGG | - | chr5.1:38430454-38430473 | MS.gene96306:intron | 45.0% | |
| GCATTACCTTCCATAGGTTG+AGG | + | chr5.1:38430301-38430320 | None:intergenic | 45.0% | |
| GGATACTGATCTTTCCGAAG+GGG | - | chr5.1:38431037-38431056 | MS.gene96306:intron | 45.0% | |
| GGGGTTTGCGAATGATGAAA+GGG | + | chr5.1:38429937-38429956 | None:intergenic | 45.0% | |
| GTCCATGTGAATCTCCCAAT+TGG | + | chr5.1:38430834-38430853 | None:intergenic | 45.0% | |
| TAAGCGAAGAAGGGGAAGAT+GGG | + | chr5.1:38429855-38429874 | None:intergenic | 45.0% | |
| TGCACAGTTCAGCTTAACTG+TGG | - | chr5.1:38431134-38431153 | MS.gene96306:intron | 45.0% | |
| TGGATTAACAGCGTCAGAAG+TGG | + | chr5.1:38430936-38430955 | None:intergenic | 45.0% | |
| TGGGGTTTGCGAATGATGAA+AGG | + | chr5.1:38429938-38429957 | None:intergenic | 45.0% | |
| TGTTCAGCATTGTTCCCCTT+CGG | + | chr5.1:38431054-38431073 | None:intergenic | 45.0% | |
| TGTTGAAGGTCCTCAACCTA+TGG | - | chr5.1:38430288-38430307 | MS.gene96306:intron | 45.0% | |
| !! | AAGAAGGGGAAGATGGGTTT+TGG | + | chr5.1:38429849-38429868 | None:intergenic | 45.0% |
| !!! | GGGAAGATGGGTTTTGGTTT+GGG | + | chr5.1:38429843-38429862 | None:intergenic | 45.0% |
| CACAAGTACAGTGGATGCTG+TGG | - | chr5.1:38430794-38430813 | MS.gene96306:intron | 50.0% | |
| CAGGTTCGATGCCTTATGGT+TGG | - | chr5.1:38431103-38431122 | MS.gene96306:intron | 50.0% | |
| CGCCAATTGGGAGATTCACA+TGG | - | chr5.1:38430829-38430848 | MS.gene96306:intron | 50.0% | |
| GAAGGTCCTCAACCTATGGA+AGG | - | chr5.1:38430292-38430311 | MS.gene96306:intron | 50.0% | |
| GATGAAGCGAGCGAAGAAAC+TGG | + | chr5.1:38429958-38429977 | None:intergenic | 50.0% | |
| GATGCAGGTTCGATGCCTTA+TGG | - | chr5.1:38431099-38431118 | MS.gene96306:intron | 50.0% | |
| GATTACCTCTAACGGAGGAG+TGG | + | chr5.1:38430007-38430026 | None:intergenic | 50.0% | |
| GCAGTTGAAGATCCGCCAAT+TGG | - | chr5.1:38430816-38430835 | MS.gene96306:intron | 50.0% | |
| GCGGATACTGATCTTTCCGA+AGG | - | chr5.1:38431035-38431054 | MS.gene96306:intron | 50.0% | |
| TGAAGCGAGCGAAGAAACTG+GGG | + | chr5.1:38429956-38429975 | None:intergenic | 50.0% | |
| ! | AGGAGTGGTGGTGATAGTCA+TGG | + | chr5.1:38429992-38430011 | None:intergenic | 50.0% |
| !!! | GGGGAAGATGGGTTTTGGTT+TGG | + | chr5.1:38429844-38429863 | None:intergenic | 50.0% |
| TACCTCTAACGGAGGAGTGG+TGG | + | chr5.1:38430004-38430023 | None:intergenic | 55.0% | |
| CACCACCACTCCTCCGTTAG+AGG | - | chr5.1:38429999-38430018 | MS.gene96306:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 38428849 | 38431221 | 38428849 | ID=MS.gene96306 |
| chr5.1 | mRNA | 38428849 | 38431221 | 38428849 | ID=MS.gene96306.t1;Parent=MS.gene96306 |
| chr5.1 | exon | 38431219 | 38431221 | 38431219 | ID=MS.gene96306.t1.exon1;Parent=MS.gene96306.t1 |
| chr5.1 | CDS | 38431219 | 38431221 | 38431219 | ID=cds.MS.gene96306.t1;Parent=MS.gene96306.t1 |
| chr5.1 | exon | 38429757 | 38429838 | 38429757 | ID=MS.gene96306.t1.exon2;Parent=MS.gene96306.t1 |
| chr5.1 | CDS | 38429757 | 38429838 | 38429757 | ID=cds.MS.gene96306.t1;Parent=MS.gene96306.t1 |
| chr5.1 | exon | 38429148 | 38429289 | 38429148 | ID=MS.gene96306.t1.exon3;Parent=MS.gene96306.t1 |
| chr5.1 | CDS | 38429148 | 38429289 | 38429148 | ID=cds.MS.gene96306.t1;Parent=MS.gene96306.t1 |
| chr5.1 | exon | 38428849 | 38429035 | 38428849 | ID=MS.gene96306.t1.exon4;Parent=MS.gene96306.t1 |
| chr5.1 | CDS | 38428849 | 38429035 | 38428849 | ID=cds.MS.gene96306.t1;Parent=MS.gene96306.t1 |
| Gene Sequence |
| Protein sequence |
